Multiple sequence alignment - TraesCS7D01G526600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G526600 chr7D 100.000 6685 0 0 1 6685 621974496 621967812 0.000000e+00 12345.0
1 TraesCS7D01G526600 chr7D 95.174 2383 107 8 1346 3726 565356557 565358933 0.000000e+00 3757.0
2 TraesCS7D01G526600 chr7D 94.078 2381 134 5 1346 3725 436488435 436490809 0.000000e+00 3609.0
3 TraesCS7D01G526600 chr7D 94.041 2383 136 6 1346 3725 634183037 634180658 0.000000e+00 3609.0
4 TraesCS7D01G526600 chr7D 87.952 1577 162 15 4011 5569 621863663 621862097 0.000000e+00 1834.0
5 TraesCS7D01G526600 chr7D 95.808 811 31 3 5784 6593 550857109 550856301 0.000000e+00 1306.0
6 TraesCS7D01G526600 chr7D 97.521 121 3 0 5666 5786 550857265 550857145 2.440000e-49 207.0
7 TraesCS7D01G526600 chr7D 98.990 99 0 1 6588 6685 621963111 621963013 6.890000e-40 176.0
8 TraesCS7D01G526600 chr7D 91.919 99 8 0 698 796 621973689 621973591 9.040000e-29 139.0
9 TraesCS7D01G526600 chr7D 91.919 99 8 0 808 906 621973799 621973701 9.040000e-29 139.0
10 TraesCS7D01G526600 chr7D 85.965 57 3 5 1 54 3867663 3867609 1.000000e-03 56.5
11 TraesCS7D01G526600 chrUn 94.664 2380 124 3 1346 3724 100308061 100310438 0.000000e+00 3688.0
12 TraesCS7D01G526600 chr4D 94.503 2383 123 7 1346 3725 461472635 461475012 0.000000e+00 3668.0
13 TraesCS7D01G526600 chr4D 95.438 811 34 3 5784 6593 353924866 353925674 0.000000e+00 1290.0
14 TraesCS7D01G526600 chr4D 96.694 121 4 0 5666 5786 353924710 353924830 1.140000e-47 202.0
15 TraesCS7D01G526600 chr1D 94.498 2381 127 4 1346 3724 246703923 246701545 0.000000e+00 3668.0
16 TraesCS7D01G526600 chr1D 96.301 811 28 2 5784 6593 460886540 460885731 0.000000e+00 1330.0
17 TraesCS7D01G526600 chr1D 99.174 121 1 0 5666 5786 460886696 460886576 1.130000e-52 219.0
18 TraesCS7D01G526600 chr5D 94.270 2391 134 3 1346 3734 527725203 527722814 0.000000e+00 3653.0
19 TraesCS7D01G526600 chr5D 94.098 2389 123 12 1346 3729 136449212 136446837 0.000000e+00 3615.0
20 TraesCS7D01G526600 chr3D 93.721 2389 139 10 1346 3730 8295055 8292674 0.000000e+00 3570.0
21 TraesCS7D01G526600 chr7A 90.886 1953 160 11 3726 5669 717408467 717406524 0.000000e+00 2604.0
22 TraesCS7D01G526600 chr7A 94.821 811 41 1 5784 6593 59436240 59435430 0.000000e+00 1264.0
23 TraesCS7D01G526600 chr7A 86.264 779 85 15 4642 5412 717365892 717365128 0.000000e+00 826.0
24 TraesCS7D01G526600 chr7A 89.983 579 55 3 4011 4587 717366473 717365896 0.000000e+00 745.0
25 TraesCS7D01G526600 chr7A 94.292 473 18 2 872 1335 717408924 717408452 0.000000e+00 715.0
26 TraesCS7D01G526600 chr7A 85.283 530 64 10 485 1005 717173886 717173362 9.870000e-148 534.0
27 TraesCS7D01G526600 chr7A 92.097 329 26 0 3726 4054 717173002 717172674 1.310000e-126 464.0
28 TraesCS7D01G526600 chr7A 87.366 372 38 4 973 1335 717173358 717172987 1.040000e-112 418.0
29 TraesCS7D01G526600 chr7A 85.619 299 35 6 506 796 717174011 717173713 2.340000e-79 307.0
30 TraesCS7D01G526600 chr7A 88.426 216 23 2 526 739 717409144 717408929 6.650000e-65 259.0
31 TraesCS7D01G526600 chr7A 97.521 121 3 0 5666 5786 59436396 59436276 2.440000e-49 207.0
32 TraesCS7D01G526600 chr7A 89.216 102 11 0 808 909 717173671 717173570 1.960000e-25 128.0
33 TraesCS7D01G526600 chr7A 90.698 86 8 0 5584 5669 717335119 717335034 1.520000e-21 115.0
34 TraesCS7D01G526600 chr7B 92.425 1241 90 2 3746 4985 717982948 717984185 0.000000e+00 1768.0
35 TraesCS7D01G526600 chr7B 90.207 1205 98 11 151 1336 717981741 717982944 0.000000e+00 1554.0
36 TraesCS7D01G526600 chr7B 90.174 1089 99 6 3741 4825 717872922 717874006 0.000000e+00 1411.0
37 TraesCS7D01G526600 chr7B 95.314 811 37 1 5784 6593 498184188 498183378 0.000000e+00 1286.0
38 TraesCS7D01G526600 chr7B 86.409 802 99 6 4868 5669 717874005 717874796 0.000000e+00 869.0
39 TraesCS7D01G526600 chr7B 90.000 650 43 5 695 1335 717872288 717872924 0.000000e+00 821.0
40 TraesCS7D01G526600 chr7B 89.524 315 33 0 5354 5668 717984691 717985005 3.760000e-107 399.0
41 TraesCS7D01G526600 chr7B 90.625 288 11 4 119 406 717871971 717872242 1.060000e-97 368.0
42 TraesCS7D01G526600 chr7B 97.521 121 3 0 5666 5786 498184344 498184224 2.440000e-49 207.0
43 TraesCS7D01G526600 chr7B 93.204 103 7 0 808 910 717872291 717872393 1.160000e-32 152.0
44 TraesCS7D01G526600 chr2D 93.441 930 42 12 5666 6593 11019600 11020512 0.000000e+00 1362.0
45 TraesCS7D01G526600 chr3A 95.684 811 33 2 5784 6593 463111734 463112543 0.000000e+00 1303.0
46 TraesCS7D01G526600 chr3A 99.174 121 1 0 5666 5786 463111578 463111698 1.130000e-52 219.0
47 TraesCS7D01G526600 chr5B 95.068 811 39 1 5784 6593 209293213 209294023 0.000000e+00 1275.0
48 TraesCS7D01G526600 chr5B 99.174 121 1 0 5666 5786 17769152 17769032 1.130000e-52 219.0
49 TraesCS7D01G526600 chr5B 97.521 121 3 0 5666 5786 119119013 119119133 2.440000e-49 207.0
50 TraesCS7D01G526600 chr5B 92.857 42 1 2 7 46 172620831 172620872 7.240000e-05 60.2
51 TraesCS7D01G526600 chr6B 94.698 811 41 2 5784 6593 396372637 396373446 0.000000e+00 1258.0
52 TraesCS7D01G526600 chr6A 86.134 238 30 3 4360 4595 95927118 95927354 3.090000e-63 254.0
53 TraesCS7D01G526600 chr2A 86.250 240 26 6 4360 4595 91555982 91556218 3.090000e-63 254.0
54 TraesCS7D01G526600 chr2A 97.500 120 3 0 5666 5785 475808712 475808593 8.790000e-49 206.0
55 TraesCS7D01G526600 chr4A 94.595 37 1 1 1 37 362078278 362078313 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G526600 chr7D 621967812 621974496 6684 True 4207.666667 12345 94.612667 1 6685 3 chr7D.!!$R6 6684
1 TraesCS7D01G526600 chr7D 565356557 565358933 2376 False 3757.000000 3757 95.174000 1346 3726 1 chr7D.!!$F2 2380
2 TraesCS7D01G526600 chr7D 436488435 436490809 2374 False 3609.000000 3609 94.078000 1346 3725 1 chr7D.!!$F1 2379
3 TraesCS7D01G526600 chr7D 634180658 634183037 2379 True 3609.000000 3609 94.041000 1346 3725 1 chr7D.!!$R4 2379
4 TraesCS7D01G526600 chr7D 621862097 621863663 1566 True 1834.000000 1834 87.952000 4011 5569 1 chr7D.!!$R2 1558
5 TraesCS7D01G526600 chr7D 550856301 550857265 964 True 756.500000 1306 96.664500 5666 6593 2 chr7D.!!$R5 927
6 TraesCS7D01G526600 chrUn 100308061 100310438 2377 False 3688.000000 3688 94.664000 1346 3724 1 chrUn.!!$F1 2378
7 TraesCS7D01G526600 chr4D 461472635 461475012 2377 False 3668.000000 3668 94.503000 1346 3725 1 chr4D.!!$F1 2379
8 TraesCS7D01G526600 chr4D 353924710 353925674 964 False 746.000000 1290 96.066000 5666 6593 2 chr4D.!!$F2 927
9 TraesCS7D01G526600 chr1D 246701545 246703923 2378 True 3668.000000 3668 94.498000 1346 3724 1 chr1D.!!$R1 2378
10 TraesCS7D01G526600 chr1D 460885731 460886696 965 True 774.500000 1330 97.737500 5666 6593 2 chr1D.!!$R2 927
11 TraesCS7D01G526600 chr5D 527722814 527725203 2389 True 3653.000000 3653 94.270000 1346 3734 1 chr5D.!!$R2 2388
12 TraesCS7D01G526600 chr5D 136446837 136449212 2375 True 3615.000000 3615 94.098000 1346 3729 1 chr5D.!!$R1 2383
13 TraesCS7D01G526600 chr3D 8292674 8295055 2381 True 3570.000000 3570 93.721000 1346 3730 1 chr3D.!!$R1 2384
14 TraesCS7D01G526600 chr7A 717406524 717409144 2620 True 1192.666667 2604 91.201333 526 5669 3 chr7A.!!$R5 5143
15 TraesCS7D01G526600 chr7A 717365128 717366473 1345 True 785.500000 826 88.123500 4011 5412 2 chr7A.!!$R4 1401
16 TraesCS7D01G526600 chr7A 59435430 59436396 966 True 735.500000 1264 96.171000 5666 6593 2 chr7A.!!$R2 927
17 TraesCS7D01G526600 chr7A 717172674 717174011 1337 True 370.200000 534 87.916200 485 4054 5 chr7A.!!$R3 3569
18 TraesCS7D01G526600 chr7B 717981741 717985005 3264 False 1240.333333 1768 90.718667 151 5668 3 chr7B.!!$F2 5517
19 TraesCS7D01G526600 chr7B 498183378 498184344 966 True 746.500000 1286 96.417500 5666 6593 2 chr7B.!!$R1 927
20 TraesCS7D01G526600 chr7B 717871971 717874796 2825 False 724.200000 1411 90.082400 119 5669 5 chr7B.!!$F1 5550
21 TraesCS7D01G526600 chr2D 11019600 11020512 912 False 1362.000000 1362 93.441000 5666 6593 1 chr2D.!!$F1 927
22 TraesCS7D01G526600 chr3A 463111578 463112543 965 False 761.000000 1303 97.429000 5666 6593 2 chr3A.!!$F1 927
23 TraesCS7D01G526600 chr5B 209293213 209294023 810 False 1275.000000 1275 95.068000 5784 6593 1 chr5B.!!$F3 809
24 TraesCS7D01G526600 chr6B 396372637 396373446 809 False 1258.000000 1258 94.698000 5784 6593 1 chr6B.!!$F1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.105224 TCGACAAGCCCAGAAAACGA 59.895 50.0 0.00 0.00 0.00 3.85 F
627 780 0.178767 TTGTAGCTGCATCGGCTGAT 59.821 50.0 4.98 0.90 46.45 2.90 F
634 787 0.452987 TGCATCGGCTGATTTTCTGC 59.547 50.0 4.93 8.26 41.91 4.26 F
668 823 0.467290 ACCATGGACACCACACAACC 60.467 55.0 21.47 0.00 35.80 3.77 F
2225 2433 0.106268 TGAGTTGCTGGAAGGCCAAA 60.106 50.0 5.01 0.00 45.41 3.28 F
3686 3901 0.450184 GTTGGCCGTATGCATCGTTT 59.550 50.0 0.19 0.00 43.89 3.60 F
5179 5516 0.108138 GCGAGTGAAGGCATGGTACT 60.108 55.0 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1530 0.459585 GACATCGCCTCAACGCCTTA 60.460 55.000 0.00 0.0 0.00 2.69 R
1855 2063 0.984230 CACCTGACCAGCCTCCTTAA 59.016 55.000 0.00 0.0 0.00 1.85 R
2225 2433 1.345741 CGGCCTCCATATGACATGAGT 59.654 52.381 3.65 0.0 0.00 3.41 R
2415 2623 1.758592 CCCCTTGGTCTTTCGGTCA 59.241 57.895 0.00 0.0 0.00 4.02 R
3741 3956 0.107410 TGGCAAACTGGTGACGTTCT 60.107 50.000 0.00 0.0 0.00 3.01 R
5550 5929 0.040794 ACCAGAGTACGTAGGGCCTT 59.959 55.000 13.45 0.0 0.00 4.35 R
6054 6472 0.613260 CGACCTTGGGATGTCTCCAA 59.387 55.000 0.00 0.0 44.08 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.125753 CTGAGGGCACAGCTCGAC 60.126 66.667 0.00 0.00 32.17 4.20
26 27 2.917227 TGAGGGCACAGCTCGACA 60.917 61.111 0.00 0.00 32.17 4.35
27 28 2.343758 GAGGGCACAGCTCGACAA 59.656 61.111 0.00 0.00 32.17 3.18
28 29 1.739562 GAGGGCACAGCTCGACAAG 60.740 63.158 0.00 0.00 32.17 3.16
36 37 4.379174 GCTCGACAAGCCCAGAAA 57.621 55.556 0.00 0.00 45.92 2.52
37 38 2.629002 GCTCGACAAGCCCAGAAAA 58.371 52.632 0.00 0.00 45.92 2.29
38 39 0.238553 GCTCGACAAGCCCAGAAAAC 59.761 55.000 0.00 0.00 45.92 2.43
39 40 0.512952 CTCGACAAGCCCAGAAAACG 59.487 55.000 0.00 0.00 0.00 3.60
40 41 0.105224 TCGACAAGCCCAGAAAACGA 59.895 50.000 0.00 0.00 0.00 3.85
41 42 0.941542 CGACAAGCCCAGAAAACGAA 59.058 50.000 0.00 0.00 0.00 3.85
42 43 1.332375 CGACAAGCCCAGAAAACGAAA 59.668 47.619 0.00 0.00 0.00 3.46
43 44 2.223386 CGACAAGCCCAGAAAACGAAAA 60.223 45.455 0.00 0.00 0.00 2.29
44 45 3.732471 CGACAAGCCCAGAAAACGAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
45 46 3.780902 ACAAGCCCAGAAAACGAAAAAG 58.219 40.909 0.00 0.00 0.00 2.27
46 47 2.509052 AGCCCAGAAAACGAAAAAGC 57.491 45.000 0.00 0.00 0.00 3.51
47 48 1.754226 AGCCCAGAAAACGAAAAAGCA 59.246 42.857 0.00 0.00 0.00 3.91
48 49 1.858458 GCCCAGAAAACGAAAAAGCAC 59.142 47.619 0.00 0.00 0.00 4.40
49 50 2.737039 GCCCAGAAAACGAAAAAGCACA 60.737 45.455 0.00 0.00 0.00 4.57
50 51 2.857748 CCCAGAAAACGAAAAAGCACAC 59.142 45.455 0.00 0.00 0.00 3.82
51 52 3.506810 CCAGAAAACGAAAAAGCACACA 58.493 40.909 0.00 0.00 0.00 3.72
52 53 3.303229 CCAGAAAACGAAAAAGCACACAC 59.697 43.478 0.00 0.00 0.00 3.82
53 54 3.917380 CAGAAAACGAAAAAGCACACACA 59.083 39.130 0.00 0.00 0.00 3.72
54 55 4.384247 CAGAAAACGAAAAAGCACACACAA 59.616 37.500 0.00 0.00 0.00 3.33
55 56 4.985409 AGAAAACGAAAAAGCACACACAAA 59.015 33.333 0.00 0.00 0.00 2.83
56 57 5.637387 AGAAAACGAAAAAGCACACACAAAT 59.363 32.000 0.00 0.00 0.00 2.32
57 58 6.809196 AGAAAACGAAAAAGCACACACAAATA 59.191 30.769 0.00 0.00 0.00 1.40
58 59 6.567769 AAACGAAAAAGCACACACAAATAG 57.432 33.333 0.00 0.00 0.00 1.73
59 60 4.041723 ACGAAAAAGCACACACAAATAGC 58.958 39.130 0.00 0.00 0.00 2.97
60 61 3.117832 CGAAAAAGCACACACAAATAGCG 59.882 43.478 0.00 0.00 0.00 4.26
61 62 2.050477 AAAGCACACACAAATAGCGC 57.950 45.000 0.00 0.00 0.00 5.92
62 63 0.240945 AAGCACACACAAATAGCGCC 59.759 50.000 2.29 0.00 0.00 6.53
63 64 0.606401 AGCACACACAAATAGCGCCT 60.606 50.000 2.29 0.00 0.00 5.52
64 65 0.179189 GCACACACAAATAGCGCCTC 60.179 55.000 2.29 0.00 0.00 4.70
65 66 1.155889 CACACACAAATAGCGCCTCA 58.844 50.000 2.29 0.00 0.00 3.86
66 67 1.535028 CACACACAAATAGCGCCTCAA 59.465 47.619 2.29 0.00 0.00 3.02
67 68 1.806542 ACACACAAATAGCGCCTCAAG 59.193 47.619 2.29 0.00 0.00 3.02
68 69 1.806542 CACACAAATAGCGCCTCAAGT 59.193 47.619 2.29 0.00 0.00 3.16
69 70 3.000041 CACACAAATAGCGCCTCAAGTA 59.000 45.455 2.29 0.00 0.00 2.24
70 71 3.062639 CACACAAATAGCGCCTCAAGTAG 59.937 47.826 2.29 0.00 0.00 2.57
71 72 2.030946 CACAAATAGCGCCTCAAGTAGC 59.969 50.000 2.29 0.00 0.00 3.58
72 73 2.279741 CAAATAGCGCCTCAAGTAGCA 58.720 47.619 2.29 0.00 0.00 3.49
73 74 2.231215 AATAGCGCCTCAAGTAGCAG 57.769 50.000 2.29 0.00 0.00 4.24
74 75 0.390860 ATAGCGCCTCAAGTAGCAGG 59.609 55.000 2.29 0.00 0.00 4.85
80 81 2.706339 CCTCAAGTAGCAGGCTCAAT 57.294 50.000 0.00 0.00 0.00 2.57
81 82 3.827008 CCTCAAGTAGCAGGCTCAATA 57.173 47.619 0.00 0.00 0.00 1.90
82 83 4.142609 CCTCAAGTAGCAGGCTCAATAA 57.857 45.455 0.00 0.00 0.00 1.40
83 84 3.873952 CCTCAAGTAGCAGGCTCAATAAC 59.126 47.826 0.00 0.00 0.00 1.89
84 85 3.521560 TCAAGTAGCAGGCTCAATAACG 58.478 45.455 0.00 0.00 0.00 3.18
85 86 3.194755 TCAAGTAGCAGGCTCAATAACGA 59.805 43.478 0.00 0.00 0.00 3.85
86 87 3.444703 AGTAGCAGGCTCAATAACGAG 57.555 47.619 0.00 0.00 36.02 4.18
114 115 2.265739 CCGCCAGAGCTGCAAGTA 59.734 61.111 1.02 0.00 36.60 2.24
115 116 1.375908 CCGCCAGAGCTGCAAGTAA 60.376 57.895 1.02 0.00 36.60 2.24
116 117 1.639298 CCGCCAGAGCTGCAAGTAAC 61.639 60.000 1.02 0.00 36.60 2.50
117 118 1.639298 CGCCAGAGCTGCAAGTAACC 61.639 60.000 1.02 0.00 36.60 2.85
122 123 3.369892 CCAGAGCTGCAAGTAACCACTAT 60.370 47.826 1.02 0.00 33.48 2.12
214 215 8.260550 CGCTCTAATTTCGTGATAACTAAGAAC 58.739 37.037 0.00 0.00 0.00 3.01
346 348 7.123247 AGGAGAAACAACATTTGAATAGATGGG 59.877 37.037 0.00 0.00 0.00 4.00
406 409 6.941857 ACAAAATAATAAAATCGTTGGCCCT 58.058 32.000 0.00 0.00 0.00 5.19
424 427 0.816825 CTGTGGCTCCCCATCAATCG 60.817 60.000 0.00 0.00 44.51 3.34
427 430 0.623194 TGGCTCCCCATCAATCGAAA 59.377 50.000 0.00 0.00 35.79 3.46
434 437 5.684030 GCTCCCCATCAATCGAAACTAAGTA 60.684 44.000 0.00 0.00 0.00 2.24
440 443 9.360093 CCCATCAATCGAAACTAAGTATCTATC 57.640 37.037 0.00 0.00 0.00 2.08
480 487 6.294787 GGTCATTCCGATCAGAGCTCTAATTA 60.295 42.308 17.75 2.68 0.00 1.40
550 563 3.128242 GCTGTGCAATTTACTCTGCTCAT 59.872 43.478 0.00 0.00 40.22 2.90
566 579 2.805099 GCTCATCCAGGAAAATAGAGCG 59.195 50.000 12.55 0.00 37.81 5.03
621 774 4.478843 AATAGCAATTGTAGCTGCATCG 57.521 40.909 4.98 0.00 43.33 3.84
627 780 0.178767 TTGTAGCTGCATCGGCTGAT 59.821 50.000 4.98 0.90 46.45 2.90
631 784 0.737219 AGCTGCATCGGCTGATTTTC 59.263 50.000 4.93 0.00 45.19 2.29
632 785 0.737219 GCTGCATCGGCTGATTTTCT 59.263 50.000 4.93 0.00 41.06 2.52
633 786 1.533338 GCTGCATCGGCTGATTTTCTG 60.533 52.381 4.93 0.00 41.06 3.02
634 787 0.452987 TGCATCGGCTGATTTTCTGC 59.547 50.000 4.93 8.26 41.91 4.26
635 788 0.452987 GCATCGGCTGATTTTCTGCA 59.547 50.000 4.93 0.00 42.21 4.41
636 789 1.796617 GCATCGGCTGATTTTCTGCAC 60.797 52.381 4.93 0.00 42.21 4.57
637 790 1.741706 CATCGGCTGATTTTCTGCACT 59.258 47.619 4.93 0.00 42.21 4.40
638 791 2.760634 TCGGCTGATTTTCTGCACTA 57.239 45.000 8.35 0.00 42.21 2.74
668 823 0.467290 ACCATGGACACCACACAACC 60.467 55.000 21.47 0.00 35.80 3.77
712 869 4.214971 CCAGGAAAAGAGATCACACACAAG 59.785 45.833 0.00 0.00 0.00 3.16
798 955 2.366916 AGAAGAGATAAGACCATGGGCG 59.633 50.000 18.09 0.00 0.00 6.13
799 956 1.051812 AGAGATAAGACCATGGGCGG 58.948 55.000 18.09 0.00 0.00 6.13
812 969 2.200092 GGCGGGAGGAGGAGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
953 1110 7.174946 TGCTATGTTAAACCAGAAAAAGAGAGG 59.825 37.037 0.00 0.00 0.00 3.69
963 1122 4.681942 CAGAAAAAGAGAGGACACGTACAG 59.318 45.833 0.00 0.00 0.00 2.74
1089 1295 3.769739 TTGAGAGTACACCAAGCACAT 57.230 42.857 0.00 0.00 0.00 3.21
1246 1453 3.421919 TTCACATTGAGGACTGCATCA 57.578 42.857 0.00 0.00 32.19 3.07
1283 1490 6.373005 TGAATCTGGTGAGGATTCTAACAA 57.627 37.500 14.65 0.00 45.29 2.83
1312 1519 6.546772 AGATGTTGGATTTGTTGGCAAAATTT 59.453 30.769 0.00 0.00 46.23 1.82
1323 1530 6.815089 TGTTGGCAAAATTTCTCAGTACATT 58.185 32.000 0.00 0.00 0.00 2.71
1326 1533 8.915654 GTTGGCAAAATTTCTCAGTACATTAAG 58.084 33.333 0.00 0.00 0.00 1.85
1343 1550 3.554692 GGCGTTGAGGCGATGTCG 61.555 66.667 0.00 0.00 43.27 4.35
1344 1551 3.554692 GCGTTGAGGCGATGTCGG 61.555 66.667 4.44 0.00 40.23 4.79
1639 1846 6.990546 AGAAAGCGTACGATAAAGTCAAATC 58.009 36.000 21.65 1.28 0.00 2.17
1640 1847 6.588756 AGAAAGCGTACGATAAAGTCAAATCA 59.411 34.615 21.65 0.00 0.00 2.57
1683 1890 7.925483 CCTTGTGTATGAAAGGTTTTGATGAAA 59.075 33.333 0.00 0.00 38.53 2.69
1684 1891 9.480053 CTTGTGTATGAAAGGTTTTGATGAAAT 57.520 29.630 0.00 0.00 0.00 2.17
1729 1936 1.134175 CACGCAAAAAGGGAGTGTTGT 59.866 47.619 0.00 0.00 32.38 3.32
1854 2062 2.936202 TGGCAATTCTGATAGGAAGGC 58.064 47.619 0.00 0.00 0.00 4.35
1855 2063 2.511218 TGGCAATTCTGATAGGAAGGCT 59.489 45.455 0.00 0.00 33.19 4.58
1968 2176 2.037901 TGGAGCATGACTTGGCAAAAA 58.962 42.857 0.00 0.00 0.00 1.94
2001 2209 7.880160 ATGAAGCTGGTGTTATGCTTATTTA 57.120 32.000 0.00 0.00 45.56 1.40
2221 2429 1.268079 GAAACTGAGTTGCTGGAAGGC 59.732 52.381 0.00 0.00 0.00 4.35
2225 2433 0.106268 TGAGTTGCTGGAAGGCCAAA 60.106 50.000 5.01 0.00 45.41 3.28
2237 2445 4.210331 GGAAGGCCAAACTCATGTCATAT 58.790 43.478 5.01 0.00 0.00 1.78
2264 2472 6.591935 AGGCCGATTAATTCTGATAAACTCA 58.408 36.000 0.00 0.00 0.00 3.41
2329 2537 4.167307 AGTCCCAGTTGGAGTTAGGAAAAA 59.833 41.667 0.00 0.00 44.99 1.94
2415 2623 4.102524 TCGCCAAGTGGGATATTATCTGTT 59.897 41.667 0.00 0.00 40.01 3.16
2479 2687 5.248020 AGGTCAAGAACAGATGTCTTCTCAT 59.752 40.000 0.00 0.00 29.93 2.90
2489 2697 4.713814 AGATGTCTTCTCATCAAGTGGCTA 59.286 41.667 8.93 0.00 44.46 3.93
2491 2699 6.552725 AGATGTCTTCTCATCAAGTGGCTATA 59.447 38.462 8.93 0.00 44.46 1.31
2535 2743 2.587194 CTTGGGCGCAGATCCTCG 60.587 66.667 10.83 0.00 0.00 4.63
2573 2781 2.623416 CTCCAAAACTTTGTCCCAGGTC 59.377 50.000 1.76 0.00 36.45 3.85
2600 2808 0.670854 GGCCGACTGACTCACCTTTC 60.671 60.000 0.00 0.00 0.00 2.62
2629 2837 8.650143 AAAGGGCTTATGAGAGTCAAATTAAA 57.350 30.769 0.00 0.00 0.00 1.52
2687 2897 1.066605 GCTAGTACGCGATTCTGGGAA 59.933 52.381 15.93 0.00 0.00 3.97
2771 2981 1.531149 ACGACGTGATGCTTTCTTTGG 59.469 47.619 0.00 0.00 0.00 3.28
2808 3018 8.927411 CAATCCATTCCCCTTAATATTCAGTTT 58.073 33.333 0.00 0.00 0.00 2.66
2872 3082 5.959583 TCTAGTGAGTAGACTGATGGAGA 57.040 43.478 0.00 0.00 32.36 3.71
2992 3202 7.676683 AGCTCTATTCCTAGTTCCAAACATA 57.323 36.000 0.00 0.00 0.00 2.29
3186 3396 0.611714 AAGTTCTATGGCGGACGGTT 59.388 50.000 0.00 0.00 0.00 4.44
3239 3449 4.323417 TCTGTCAGCACGTTATTTGGAAT 58.677 39.130 0.00 0.00 0.00 3.01
3312 3522 2.315176 TGTGCTTTATTGTGGGCAGTT 58.685 42.857 0.00 0.00 35.29 3.16
3644 3858 7.267128 TCGTTTGAGACTTTAAGACCTTGTTA 58.733 34.615 0.00 0.00 0.00 2.41
3686 3901 0.450184 GTTGGCCGTATGCATCGTTT 59.550 50.000 0.19 0.00 43.89 3.60
3777 3992 2.961741 TGCCAAACAAATCCAACAGCTA 59.038 40.909 0.00 0.00 0.00 3.32
3790 4005 2.749621 CAACAGCTAAAGACATGGGTCC 59.250 50.000 0.00 0.00 45.48 4.46
3840 4055 1.303561 GCTTGATGAGTGTGCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
3853 4068 2.170607 TGTGCCCCAAGTTCTAGCTATC 59.829 50.000 0.00 0.00 0.00 2.08
3856 4071 3.641906 TGCCCCAAGTTCTAGCTATCTAC 59.358 47.826 0.00 0.00 0.00 2.59
3975 4190 3.013921 GGAGGAATTTGCATCCGTACAA 58.986 45.455 0.00 0.00 42.03 2.41
4017 4232 1.143970 TTGGGTTTGGGGGTCTAGGG 61.144 60.000 0.00 0.00 0.00 3.53
4059 4278 3.928754 AGTATACCATGAGCTTGGAGGA 58.071 45.455 11.52 0.00 39.25 3.71
4080 4299 5.047802 AGGACAATATGACTGCAAGGTTTTG 60.048 40.000 0.00 0.00 39.30 2.44
4160 4380 1.586154 GAGATGCCACAACCAACCCG 61.586 60.000 0.00 0.00 0.00 5.28
4186 4406 0.857935 CGAGGCGCAAGATCTCATTC 59.142 55.000 10.83 0.00 38.50 2.67
4459 4689 5.302360 ACGAGGTAGCAAAGTAATCACAAA 58.698 37.500 0.00 0.00 0.00 2.83
4587 4817 6.534436 CAGTAGAGTTGGACAGATTGATCTTG 59.466 42.308 0.00 0.00 34.22 3.02
4595 4825 5.416639 TGGACAGATTGATCTTGAACCATTG 59.583 40.000 0.00 0.00 34.22 2.82
4706 4939 6.114187 ACTAGATCAGTGACACAATGGAAA 57.886 37.500 8.59 0.00 35.62 3.13
4768 5001 2.307098 CAACTTTGGAGGGGATGAGACT 59.693 50.000 0.00 0.00 0.00 3.24
4803 5036 6.825721 CCTTAGCTACAACAATCTTCCTCATT 59.174 38.462 0.00 0.00 0.00 2.57
4931 5164 1.406180 CATGGCGAGGATGCAAATGAA 59.594 47.619 0.00 0.00 34.28 2.57
4938 5171 3.198068 GAGGATGCAAATGAAGTCGCTA 58.802 45.455 0.00 0.00 0.00 4.26
4965 5198 6.385033 AGTTGCTTTAATGAGCTTGTCAATC 58.615 36.000 1.10 0.00 43.11 2.67
4969 5202 5.953047 GCTTTAATGAGCTTGTCAATCGGAC 60.953 44.000 0.00 0.00 41.95 4.79
4987 5324 3.279434 GGACCATGATCCAACCTACAAC 58.721 50.000 0.00 0.00 38.77 3.32
5004 5341 6.055588 CCTACAACTATTGGGTACAATGGAG 58.944 44.000 10.18 5.53 45.34 3.86
5116 5453 4.120331 GGGCATGACCGCAGCAAC 62.120 66.667 0.00 0.00 40.62 4.17
5117 5454 3.364441 GGCATGACCGCAGCAACA 61.364 61.111 0.00 0.00 0.00 3.33
5118 5455 2.703798 GGCATGACCGCAGCAACAT 61.704 57.895 0.00 0.00 0.00 2.71
5120 5457 1.925415 GCATGACCGCAGCAACATGA 61.925 55.000 20.46 0.00 41.45 3.07
5125 5462 1.443194 CCGCAGCAACATGAAGCAC 60.443 57.895 14.61 6.91 0.00 4.40
5164 5501 3.459232 TCAGTTGGATTATGGAGCGAG 57.541 47.619 0.00 0.00 0.00 5.03
5173 5510 1.123077 TATGGAGCGAGTGAAGGCAT 58.877 50.000 0.00 0.00 0.00 4.40
5174 5511 0.463295 ATGGAGCGAGTGAAGGCATG 60.463 55.000 0.00 0.00 0.00 4.06
5179 5516 0.108138 GCGAGTGAAGGCATGGTACT 60.108 55.000 0.00 0.00 0.00 2.73
5180 5517 1.645034 CGAGTGAAGGCATGGTACTG 58.355 55.000 0.00 0.00 0.00 2.74
5230 5567 3.885297 TCTCTTGCTCTTTTTGGGAAGTG 59.115 43.478 0.00 0.00 33.62 3.16
5233 5570 1.039856 GCTCTTTTTGGGAAGTGCCA 58.960 50.000 0.00 0.00 39.17 4.92
5274 5611 1.064825 ACTCAAGTCCATCCGGGTTT 58.935 50.000 0.00 0.00 38.11 3.27
5322 5659 7.721088 CACATGGGTGATAGGATTGACCTCC 62.721 52.000 0.00 0.00 46.50 4.30
5408 5778 1.285078 ACCCTTATTCTGCCAACCCTC 59.715 52.381 0.00 0.00 0.00 4.30
5441 5811 6.268387 ACCTGAAACATTTGGAGACATTGAAT 59.732 34.615 0.00 0.00 42.32 2.57
5486 5865 7.214381 CCATGCCATCTGATATTGTTGATTTT 58.786 34.615 0.00 0.00 0.00 1.82
5496 5875 6.591062 TGATATTGTTGATTTTCCTTGCTTGC 59.409 34.615 0.00 0.00 0.00 4.01
5549 5928 5.185249 GCTACCTGATGGAATTCGTAGGATA 59.815 44.000 17.47 8.91 37.04 2.59
5550 5929 6.295123 GCTACCTGATGGAATTCGTAGGATAA 60.295 42.308 17.47 6.58 37.04 1.75
5633 6013 6.263168 CAGGTCTTGGTGAACTTACAAATCTT 59.737 38.462 0.00 0.00 40.40 2.40
5636 6016 7.660208 GGTCTTGGTGAACTTACAAATCTTAGA 59.340 37.037 0.00 0.00 0.00 2.10
5655 6035 7.934457 TCTTAGATATCTTGATTTTTGCTGCC 58.066 34.615 11.25 0.00 0.00 4.85
5659 6039 3.322211 TCTTGATTTTTGCTGCCATGG 57.678 42.857 7.63 7.63 0.00 3.66
5818 6236 4.894114 ACTCCATTAGCGTTACAGTATCCT 59.106 41.667 0.00 0.00 0.00 3.24
5875 6293 0.461870 TTGCGTCTGTGTTGCAGTCT 60.462 50.000 0.00 0.00 45.23 3.24
5932 6350 0.178068 GTCCACGCTGGGATACATGT 59.822 55.000 2.69 2.69 39.62 3.21
6040 6458 9.828852 GTTTTCACGGTTAAATCAATGTATACA 57.171 29.630 8.27 8.27 0.00 2.29
6114 6533 4.929819 AGGTGCCGTTGAAATAAAAGTT 57.070 36.364 0.00 0.00 0.00 2.66
6297 6716 4.846779 TGTTGCTTTTAACATCACTCCC 57.153 40.909 0.00 0.00 35.75 4.30
6373 6792 2.148768 CAGCTGCACAAATCAGAGTCA 58.851 47.619 0.00 0.00 33.54 3.41
6421 6840 4.963276 TGGAATTGTCGGAATGATGTTC 57.037 40.909 0.00 0.00 0.00 3.18
6589 7008 6.127168 GGATACATACAACCGATATGGATGGA 60.127 42.308 10.65 4.08 44.51 3.41
6593 7012 2.104792 ACAACCGATATGGATGGAGGTG 59.895 50.000 6.47 0.00 44.51 4.00
6594 7013 2.103153 ACCGATATGGATGGAGGTGT 57.897 50.000 0.00 0.00 42.00 4.16
6595 7014 2.408565 ACCGATATGGATGGAGGTGTT 58.591 47.619 0.00 0.00 42.00 3.32
6596 7015 3.583228 ACCGATATGGATGGAGGTGTTA 58.417 45.455 0.00 0.00 42.00 2.41
6597 7016 3.578716 ACCGATATGGATGGAGGTGTTAG 59.421 47.826 0.00 0.00 42.00 2.34
6598 7017 3.832490 CCGATATGGATGGAGGTGTTAGA 59.168 47.826 0.00 0.00 42.00 2.10
6599 7018 4.283467 CCGATATGGATGGAGGTGTTAGAA 59.717 45.833 0.00 0.00 42.00 2.10
6600 7019 5.046304 CCGATATGGATGGAGGTGTTAGAAT 60.046 44.000 0.00 0.00 42.00 2.40
6601 7020 6.154534 CCGATATGGATGGAGGTGTTAGAATA 59.845 42.308 0.00 0.00 42.00 1.75
6602 7021 7.036220 CGATATGGATGGAGGTGTTAGAATAC 58.964 42.308 0.00 0.00 0.00 1.89
6603 7022 5.568620 ATGGATGGAGGTGTTAGAATACC 57.431 43.478 0.13 0.13 40.16 2.73
6604 7023 3.386726 TGGATGGAGGTGTTAGAATACCG 59.613 47.826 2.90 0.00 44.05 4.02
6605 7024 3.387050 GGATGGAGGTGTTAGAATACCGT 59.613 47.826 2.90 0.00 44.05 4.83
6606 7025 4.141779 GGATGGAGGTGTTAGAATACCGTT 60.142 45.833 2.90 0.00 44.05 4.44
6607 7026 4.460948 TGGAGGTGTTAGAATACCGTTC 57.539 45.455 2.90 0.00 44.05 3.95
6608 7027 3.833650 TGGAGGTGTTAGAATACCGTTCA 59.166 43.478 2.90 1.26 44.05 3.18
6609 7028 4.283978 TGGAGGTGTTAGAATACCGTTCAA 59.716 41.667 2.90 0.00 44.05 2.69
6610 7029 5.221682 TGGAGGTGTTAGAATACCGTTCAAA 60.222 40.000 2.90 0.00 44.05 2.69
6611 7030 5.878669 GGAGGTGTTAGAATACCGTTCAAAT 59.121 40.000 2.90 0.00 44.05 2.32
6612 7031 6.036844 GGAGGTGTTAGAATACCGTTCAAATC 59.963 42.308 2.90 0.00 44.05 2.17
6613 7032 6.708285 AGGTGTTAGAATACCGTTCAAATCT 58.292 36.000 2.90 0.00 44.05 2.40
6614 7033 7.166167 AGGTGTTAGAATACCGTTCAAATCTT 58.834 34.615 2.90 0.00 44.05 2.40
6615 7034 7.333672 AGGTGTTAGAATACCGTTCAAATCTTC 59.666 37.037 2.90 0.00 44.05 2.87
6616 7035 7.333672 GGTGTTAGAATACCGTTCAAATCTTCT 59.666 37.037 0.00 0.00 30.35 2.85
6617 7036 8.169268 GTGTTAGAATACCGTTCAAATCTTCTG 58.831 37.037 0.00 0.00 0.00 3.02
6618 7037 7.876068 TGTTAGAATACCGTTCAAATCTTCTGT 59.124 33.333 0.00 0.00 0.00 3.41
6619 7038 9.362539 GTTAGAATACCGTTCAAATCTTCTGTA 57.637 33.333 0.00 0.00 0.00 2.74
6620 7039 9.932207 TTAGAATACCGTTCAAATCTTCTGTAA 57.068 29.630 0.00 0.00 0.00 2.41
6622 7041 9.099454 AGAATACCGTTCAAATCTTCTGTAATC 57.901 33.333 0.00 0.00 0.00 1.75
6623 7042 9.099454 GAATACCGTTCAAATCTTCTGTAATCT 57.901 33.333 0.00 0.00 0.00 2.40
6626 7045 8.842358 ACCGTTCAAATCTTCTGTAATCTAAA 57.158 30.769 0.00 0.00 0.00 1.85
6627 7046 8.718734 ACCGTTCAAATCTTCTGTAATCTAAAC 58.281 33.333 0.00 0.00 0.00 2.01
6628 7047 8.175716 CCGTTCAAATCTTCTGTAATCTAAACC 58.824 37.037 0.00 0.00 0.00 3.27
6629 7048 8.936864 CGTTCAAATCTTCTGTAATCTAAACCT 58.063 33.333 0.00 0.00 0.00 3.50
6632 7051 9.877178 TCAAATCTTCTGTAATCTAAACCTCTC 57.123 33.333 0.00 0.00 0.00 3.20
6633 7052 9.883142 CAAATCTTCTGTAATCTAAACCTCTCT 57.117 33.333 0.00 0.00 0.00 3.10
6635 7054 9.487442 AATCTTCTGTAATCTAAACCTCTCTCT 57.513 33.333 0.00 0.00 0.00 3.10
6640 7059 9.787435 TCTGTAATCTAAACCTCTCTCTATCTC 57.213 37.037 0.00 0.00 0.00 2.75
6641 7060 9.793259 CTGTAATCTAAACCTCTCTCTATCTCT 57.207 37.037 0.00 0.00 0.00 3.10
6645 7064 9.936329 AATCTAAACCTCTCTCTATCTCTTCTT 57.064 33.333 0.00 0.00 0.00 2.52
6646 7065 8.974060 TCTAAACCTCTCTCTATCTCTTCTTC 57.026 38.462 0.00 0.00 0.00 2.87
6647 7066 8.778059 TCTAAACCTCTCTCTATCTCTTCTTCT 58.222 37.037 0.00 0.00 0.00 2.85
6648 7067 7.881775 AAACCTCTCTCTATCTCTTCTTCTC 57.118 40.000 0.00 0.00 0.00 2.87
6649 7068 6.831664 ACCTCTCTCTATCTCTTCTTCTCT 57.168 41.667 0.00 0.00 0.00 3.10
6650 7069 6.831976 ACCTCTCTCTATCTCTTCTTCTCTC 58.168 44.000 0.00 0.00 0.00 3.20
6651 7070 5.928839 CCTCTCTCTATCTCTTCTTCTCTCG 59.071 48.000 0.00 0.00 0.00 4.04
6652 7071 5.853936 TCTCTCTATCTCTTCTTCTCTCGG 58.146 45.833 0.00 0.00 0.00 4.63
6653 7072 5.365605 TCTCTCTATCTCTTCTTCTCTCGGT 59.634 44.000 0.00 0.00 0.00 4.69
6654 7073 5.996644 TCTCTATCTCTTCTTCTCTCGGTT 58.003 41.667 0.00 0.00 0.00 4.44
6655 7074 6.053005 TCTCTATCTCTTCTTCTCTCGGTTC 58.947 44.000 0.00 0.00 0.00 3.62
6656 7075 5.127491 TCTATCTCTTCTTCTCTCGGTTCC 58.873 45.833 0.00 0.00 0.00 3.62
6657 7076 3.443145 TCTCTTCTTCTCTCGGTTCCT 57.557 47.619 0.00 0.00 0.00 3.36
6658 7077 4.571369 TCTCTTCTTCTCTCGGTTCCTA 57.429 45.455 0.00 0.00 0.00 2.94
6659 7078 5.118729 TCTCTTCTTCTCTCGGTTCCTAT 57.881 43.478 0.00 0.00 0.00 2.57
6660 7079 5.511363 TCTCTTCTTCTCTCGGTTCCTATT 58.489 41.667 0.00 0.00 0.00 1.73
6661 7080 5.591067 TCTCTTCTTCTCTCGGTTCCTATTC 59.409 44.000 0.00 0.00 0.00 1.75
6662 7081 5.511363 TCTTCTTCTCTCGGTTCCTATTCT 58.489 41.667 0.00 0.00 0.00 2.40
6663 7082 5.358442 TCTTCTTCTCTCGGTTCCTATTCTG 59.642 44.000 0.00 0.00 0.00 3.02
6664 7083 4.856509 TCTTCTCTCGGTTCCTATTCTGA 58.143 43.478 0.00 0.00 0.00 3.27
6665 7084 4.641094 TCTTCTCTCGGTTCCTATTCTGAC 59.359 45.833 0.00 0.00 0.00 3.51
6666 7085 4.237976 TCTCTCGGTTCCTATTCTGACT 57.762 45.455 0.00 0.00 0.00 3.41
6667 7086 4.200874 TCTCTCGGTTCCTATTCTGACTC 58.799 47.826 0.00 0.00 0.00 3.36
6668 7087 4.080243 TCTCTCGGTTCCTATTCTGACTCT 60.080 45.833 0.00 0.00 0.00 3.24
6669 7088 4.601084 TCTCGGTTCCTATTCTGACTCTT 58.399 43.478 0.00 0.00 0.00 2.85
6670 7089 5.017490 TCTCGGTTCCTATTCTGACTCTTT 58.983 41.667 0.00 0.00 0.00 2.52
6671 7090 6.185511 TCTCGGTTCCTATTCTGACTCTTTA 58.814 40.000 0.00 0.00 0.00 1.85
6672 7091 6.834451 TCTCGGTTCCTATTCTGACTCTTTAT 59.166 38.462 0.00 0.00 0.00 1.40
6673 7092 6.806751 TCGGTTCCTATTCTGACTCTTTATG 58.193 40.000 0.00 0.00 0.00 1.90
6674 7093 6.380274 TCGGTTCCTATTCTGACTCTTTATGT 59.620 38.462 0.00 0.00 0.00 2.29
6675 7094 7.558807 TCGGTTCCTATTCTGACTCTTTATGTA 59.441 37.037 0.00 0.00 0.00 2.29
6676 7095 8.361139 CGGTTCCTATTCTGACTCTTTATGTAT 58.639 37.037 0.00 0.00 0.00 2.29
6677 7096 9.699703 GGTTCCTATTCTGACTCTTTATGTATC 57.300 37.037 0.00 0.00 0.00 2.24
6678 7097 9.400638 GTTCCTATTCTGACTCTTTATGTATCG 57.599 37.037 0.00 0.00 0.00 2.92
6679 7098 8.919777 TCCTATTCTGACTCTTTATGTATCGA 57.080 34.615 0.00 0.00 0.00 3.59
6680 7099 9.521841 TCCTATTCTGACTCTTTATGTATCGAT 57.478 33.333 2.16 2.16 0.00 3.59
6681 7100 9.566530 CCTATTCTGACTCTTTATGTATCGATG 57.433 37.037 8.54 0.00 0.00 3.84
6684 7103 7.809546 TCTGACTCTTTATGTATCGATGAGT 57.190 36.000 8.54 10.00 36.22 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.125753 GTCGAGCTGTGCCCTCAG 60.126 66.667 0.00 0.00 38.35 3.35
9 10 2.440385 CTTGTCGAGCTGTGCCCTCA 62.440 60.000 0.00 0.00 0.00 3.86
10 11 1.739562 CTTGTCGAGCTGTGCCCTC 60.740 63.158 0.00 0.00 0.00 4.30
11 12 2.345244 CTTGTCGAGCTGTGCCCT 59.655 61.111 0.00 0.00 0.00 5.19
20 21 0.512952 CGTTTTCTGGGCTTGTCGAG 59.487 55.000 0.00 0.00 0.00 4.04
21 22 0.105224 TCGTTTTCTGGGCTTGTCGA 59.895 50.000 0.00 0.00 0.00 4.20
22 23 0.941542 TTCGTTTTCTGGGCTTGTCG 59.058 50.000 0.00 0.00 0.00 4.35
23 24 3.430333 TTTTCGTTTTCTGGGCTTGTC 57.570 42.857 0.00 0.00 0.00 3.18
24 25 3.780902 CTTTTTCGTTTTCTGGGCTTGT 58.219 40.909 0.00 0.00 0.00 3.16
25 26 2.539688 GCTTTTTCGTTTTCTGGGCTTG 59.460 45.455 0.00 0.00 0.00 4.01
26 27 2.167487 TGCTTTTTCGTTTTCTGGGCTT 59.833 40.909 0.00 0.00 0.00 4.35
27 28 1.754226 TGCTTTTTCGTTTTCTGGGCT 59.246 42.857 0.00 0.00 0.00 5.19
28 29 1.858458 GTGCTTTTTCGTTTTCTGGGC 59.142 47.619 0.00 0.00 0.00 5.36
29 30 2.857748 GTGTGCTTTTTCGTTTTCTGGG 59.142 45.455 0.00 0.00 0.00 4.45
30 31 3.303229 GTGTGTGCTTTTTCGTTTTCTGG 59.697 43.478 0.00 0.00 0.00 3.86
31 32 3.917380 TGTGTGTGCTTTTTCGTTTTCTG 59.083 39.130 0.00 0.00 0.00 3.02
32 33 4.167554 TGTGTGTGCTTTTTCGTTTTCT 57.832 36.364 0.00 0.00 0.00 2.52
33 34 4.894798 TTGTGTGTGCTTTTTCGTTTTC 57.105 36.364 0.00 0.00 0.00 2.29
34 35 5.854431 ATTTGTGTGTGCTTTTTCGTTTT 57.146 30.435 0.00 0.00 0.00 2.43
35 36 5.005299 GCTATTTGTGTGTGCTTTTTCGTTT 59.995 36.000 0.00 0.00 0.00 3.60
36 37 4.502645 GCTATTTGTGTGTGCTTTTTCGTT 59.497 37.500 0.00 0.00 0.00 3.85
37 38 4.041723 GCTATTTGTGTGTGCTTTTTCGT 58.958 39.130 0.00 0.00 0.00 3.85
38 39 3.117832 CGCTATTTGTGTGTGCTTTTTCG 59.882 43.478 0.00 0.00 0.00 3.46
39 40 3.121362 GCGCTATTTGTGTGTGCTTTTTC 60.121 43.478 0.00 0.00 34.76 2.29
40 41 2.794350 GCGCTATTTGTGTGTGCTTTTT 59.206 40.909 0.00 0.00 34.76 1.94
41 42 2.393764 GCGCTATTTGTGTGTGCTTTT 58.606 42.857 0.00 0.00 34.76 2.27
42 43 1.335872 GGCGCTATTTGTGTGTGCTTT 60.336 47.619 7.64 0.00 37.37 3.51
43 44 0.240945 GGCGCTATTTGTGTGTGCTT 59.759 50.000 7.64 0.00 37.37 3.91
44 45 0.606401 AGGCGCTATTTGTGTGTGCT 60.606 50.000 7.64 0.00 37.37 4.40
45 46 0.179189 GAGGCGCTATTTGTGTGTGC 60.179 55.000 7.64 0.00 36.59 4.57
46 47 1.155889 TGAGGCGCTATTTGTGTGTG 58.844 50.000 7.64 0.00 0.00 3.82
47 48 1.806542 CTTGAGGCGCTATTTGTGTGT 59.193 47.619 7.64 0.00 0.00 3.72
48 49 1.806542 ACTTGAGGCGCTATTTGTGTG 59.193 47.619 7.64 0.00 0.00 3.82
49 50 2.185004 ACTTGAGGCGCTATTTGTGT 57.815 45.000 7.64 0.00 0.00 3.72
50 51 2.030946 GCTACTTGAGGCGCTATTTGTG 59.969 50.000 7.64 0.00 0.00 3.33
51 52 2.280628 GCTACTTGAGGCGCTATTTGT 58.719 47.619 7.64 4.22 0.00 2.83
52 53 2.279741 TGCTACTTGAGGCGCTATTTG 58.720 47.619 7.64 0.00 0.00 2.32
53 54 2.555199 CTGCTACTTGAGGCGCTATTT 58.445 47.619 7.64 0.00 0.00 1.40
54 55 1.202580 CCTGCTACTTGAGGCGCTATT 60.203 52.381 7.64 0.00 0.00 1.73
55 56 0.390860 CCTGCTACTTGAGGCGCTAT 59.609 55.000 7.64 0.00 0.00 2.97
56 57 1.816537 CCTGCTACTTGAGGCGCTA 59.183 57.895 7.64 0.00 0.00 4.26
57 58 2.581354 CCTGCTACTTGAGGCGCT 59.419 61.111 7.64 0.00 0.00 5.92
58 59 3.198489 GCCTGCTACTTGAGGCGC 61.198 66.667 0.00 0.00 45.25 6.53
61 62 2.706339 ATTGAGCCTGCTACTTGAGG 57.294 50.000 0.00 0.00 0.00 3.86
62 63 3.553511 CGTTATTGAGCCTGCTACTTGAG 59.446 47.826 0.00 0.00 0.00 3.02
63 64 3.194755 TCGTTATTGAGCCTGCTACTTGA 59.805 43.478 0.00 0.00 0.00 3.02
64 65 3.521560 TCGTTATTGAGCCTGCTACTTG 58.478 45.455 0.00 0.00 0.00 3.16
65 66 3.786635 CTCGTTATTGAGCCTGCTACTT 58.213 45.455 0.00 0.00 0.00 2.24
66 67 3.444703 CTCGTTATTGAGCCTGCTACT 57.555 47.619 0.00 0.00 0.00 2.57
75 76 2.474526 CCGCAACAAGCTCGTTATTGAG 60.475 50.000 0.00 0.00 42.61 3.02
76 77 1.463056 CCGCAACAAGCTCGTTATTGA 59.537 47.619 0.00 0.00 42.61 2.57
77 78 1.882198 CCGCAACAAGCTCGTTATTG 58.118 50.000 0.00 0.00 42.61 1.90
78 79 0.168128 GCCGCAACAAGCTCGTTATT 59.832 50.000 0.00 0.00 42.61 1.40
79 80 1.644786 GGCCGCAACAAGCTCGTTAT 61.645 55.000 0.00 0.00 42.61 1.89
80 81 2.322081 GGCCGCAACAAGCTCGTTA 61.322 57.895 0.00 0.00 42.61 3.18
81 82 3.660111 GGCCGCAACAAGCTCGTT 61.660 61.111 0.00 0.00 42.61 3.85
97 98 1.375908 TTACTTGCAGCTCTGGCGG 60.376 57.895 0.00 0.00 44.37 6.13
98 99 1.639298 GGTTACTTGCAGCTCTGGCG 61.639 60.000 0.00 0.00 44.37 5.69
99 100 0.606401 TGGTTACTTGCAGCTCTGGC 60.606 55.000 0.00 0.00 39.06 4.85
100 101 1.160137 GTGGTTACTTGCAGCTCTGG 58.840 55.000 0.00 0.00 0.00 3.86
101 102 2.175878 AGTGGTTACTTGCAGCTCTG 57.824 50.000 0.00 0.00 31.66 3.35
102 103 5.878406 ATATAGTGGTTACTTGCAGCTCT 57.122 39.130 0.00 0.00 38.36 4.09
103 104 6.927294 AAATATAGTGGTTACTTGCAGCTC 57.073 37.500 0.00 0.00 38.36 4.09
104 105 7.112779 AGAAAATATAGTGGTTACTTGCAGCT 58.887 34.615 0.00 0.00 38.36 4.24
105 106 7.321745 AGAAAATATAGTGGTTACTTGCAGC 57.678 36.000 0.00 0.00 38.36 5.25
216 217 9.044150 CCATTTTTATGTTCTGTCATTTGTGTT 57.956 29.630 0.00 0.00 0.00 3.32
268 270 6.647334 TTCTGTCATTTTGCCTATTGTCAA 57.353 33.333 0.00 0.00 0.00 3.18
278 280 8.057742 CACTGTTGTTTATTTCTGTCATTTTGC 58.942 33.333 0.00 0.00 0.00 3.68
346 348 5.174943 GCATTTTTGGTAGTACAAGTGCAAC 59.825 40.000 11.89 0.00 36.23 4.17
406 409 1.224315 CGATTGATGGGGAGCCACA 59.776 57.895 0.00 0.00 0.00 4.17
413 416 6.525629 AGATACTTAGTTTCGATTGATGGGG 58.474 40.000 0.00 0.00 0.00 4.96
419 422 9.413048 GAAGGGATAGATACTTAGTTTCGATTG 57.587 37.037 0.00 0.00 0.00 2.67
424 427 7.521871 TCGGAAGGGATAGATACTTAGTTTC 57.478 40.000 0.00 0.00 0.00 2.78
427 430 7.011382 ACAATCGGAAGGGATAGATACTTAGT 58.989 38.462 0.00 0.00 0.00 2.24
434 437 3.580458 CCAGACAATCGGAAGGGATAGAT 59.420 47.826 0.00 0.00 0.00 1.98
440 443 0.613260 TGACCAGACAATCGGAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
480 487 9.058174 TCTCATTTTGTGCATGAAATTCAAAAT 57.942 25.926 13.25 13.25 44.19 1.82
491 498 7.595130 CCATCATCTTATCTCATTTTGTGCATG 59.405 37.037 0.00 0.00 0.00 4.06
502 509 4.716287 TGTGGTGTCCATCATCTTATCTCA 59.284 41.667 0.00 0.00 35.28 3.27
550 563 1.739035 CGTGCGCTCTATTTTCCTGGA 60.739 52.381 9.73 0.00 0.00 3.86
591 744 6.867816 CAGCTACAATTGCTATTTGTTTTCCA 59.132 34.615 5.05 0.00 38.92 3.53
605 758 1.019673 AGCCGATGCAGCTACAATTG 58.980 50.000 3.24 3.24 39.29 2.32
621 774 4.697352 TCTCTTTAGTGCAGAAAATCAGCC 59.303 41.667 0.00 0.00 0.00 4.85
627 780 7.450074 TGGTCTTATCTCTTTAGTGCAGAAAA 58.550 34.615 0.00 0.00 0.00 2.29
631 784 5.757320 CCATGGTCTTATCTCTTTAGTGCAG 59.243 44.000 2.57 0.00 0.00 4.41
632 785 5.425217 TCCATGGTCTTATCTCTTTAGTGCA 59.575 40.000 12.58 0.00 0.00 4.57
633 786 5.755861 GTCCATGGTCTTATCTCTTTAGTGC 59.244 44.000 12.58 0.00 0.00 4.40
634 787 6.758886 GTGTCCATGGTCTTATCTCTTTAGTG 59.241 42.308 12.58 0.00 0.00 2.74
635 788 6.127026 GGTGTCCATGGTCTTATCTCTTTAGT 60.127 42.308 12.58 0.00 0.00 2.24
636 789 6.127054 TGGTGTCCATGGTCTTATCTCTTTAG 60.127 42.308 12.58 0.00 0.00 1.85
637 790 5.724370 TGGTGTCCATGGTCTTATCTCTTTA 59.276 40.000 12.58 0.00 0.00 1.85
638 791 4.536090 TGGTGTCCATGGTCTTATCTCTTT 59.464 41.667 12.58 0.00 0.00 2.52
668 823 4.278170 TGGTTGAACAGAGTAAAATGCAGG 59.722 41.667 0.00 0.00 0.00 4.85
712 869 8.220755 TGTTTTCCTATTATATGTGGTTGAGC 57.779 34.615 0.00 0.00 0.00 4.26
798 955 1.342474 TGTGTGATCTCTCCTCCTCCC 60.342 57.143 0.00 0.00 0.00 4.30
799 956 1.754226 GTGTGTGATCTCTCCTCCTCC 59.246 57.143 0.00 0.00 0.00 4.30
812 969 0.463654 GTGGCAGAGGTTGTGTGTGA 60.464 55.000 0.00 0.00 0.00 3.58
885 1042 7.734865 TGGTGTCCATGGTATTATCTCTTCTAT 59.265 37.037 12.58 0.00 0.00 1.98
898 1055 0.613260 GCTCTGTGGTGTCCATGGTA 59.387 55.000 12.58 0.00 35.28 3.25
953 1110 1.884579 TCCCTCAGTTCTGTACGTGTC 59.115 52.381 0.00 0.00 0.00 3.67
963 1122 2.816672 CCTTGCTCTTTTCCCTCAGTTC 59.183 50.000 0.00 0.00 0.00 3.01
1089 1295 1.675310 CACCTCCCGCTGCATTTCA 60.675 57.895 0.00 0.00 0.00 2.69
1147 1354 3.196469 TCCATGTTCTCGAGCTTCTTGAT 59.804 43.478 7.81 0.00 0.00 2.57
1215 1422 3.303329 CCTCAATGTGAAACGCCATATCG 60.303 47.826 0.00 0.00 42.39 2.92
1283 1490 3.259123 GCCAACAAATCCAACATCTCCTT 59.741 43.478 0.00 0.00 0.00 3.36
1312 1519 4.381612 CCTCAACGCCTTAATGTACTGAGA 60.382 45.833 0.00 0.00 32.58 3.27
1323 1530 0.459585 GACATCGCCTCAACGCCTTA 60.460 55.000 0.00 0.00 0.00 2.69
1326 1533 3.554692 CGACATCGCCTCAACGCC 61.555 66.667 0.00 0.00 0.00 5.68
1336 1543 3.822594 TTGTTCCAAAATCCGACATCG 57.177 42.857 0.00 0.00 39.44 3.84
1337 1544 6.526674 GTGTTATTGTTCCAAAATCCGACATC 59.473 38.462 0.00 0.00 0.00 3.06
1338 1545 6.208599 AGTGTTATTGTTCCAAAATCCGACAT 59.791 34.615 0.00 0.00 0.00 3.06
1339 1546 5.533154 AGTGTTATTGTTCCAAAATCCGACA 59.467 36.000 0.00 0.00 0.00 4.35
1340 1547 5.856455 CAGTGTTATTGTTCCAAAATCCGAC 59.144 40.000 0.00 0.00 0.00 4.79
1341 1548 5.563867 GCAGTGTTATTGTTCCAAAATCCGA 60.564 40.000 0.00 0.00 0.00 4.55
1342 1549 4.621034 GCAGTGTTATTGTTCCAAAATCCG 59.379 41.667 0.00 0.00 0.00 4.18
1343 1550 5.783111 AGCAGTGTTATTGTTCCAAAATCC 58.217 37.500 0.00 0.00 0.00 3.01
1344 1551 6.366061 GGAAGCAGTGTTATTGTTCCAAAATC 59.634 38.462 0.00 0.00 34.72 2.17
1683 1890 2.073252 TCTACCTGATGTCGCCAGAT 57.927 50.000 0.00 0.00 33.65 2.90
1684 1891 1.847328 TTCTACCTGATGTCGCCAGA 58.153 50.000 0.00 0.00 33.65 3.86
1729 1936 9.309516 GACCTATGTCGTCATTCACTTTAATTA 57.690 33.333 0.00 0.00 35.70 1.40
1854 2062 1.065854 CACCTGACCAGCCTCCTTAAG 60.066 57.143 0.00 0.00 0.00 1.85
1855 2063 0.984230 CACCTGACCAGCCTCCTTAA 59.016 55.000 0.00 0.00 0.00 1.85
1968 2176 4.207891 ACACCAGCTTCATATTTCTCGT 57.792 40.909 0.00 0.00 0.00 4.18
2001 2209 6.413783 AATCTTTAACCCGGTCAATTGTTT 57.586 33.333 5.13 0.00 0.00 2.83
2069 2277 4.568072 TTGCCTATAAGCCTCTTGTTCA 57.432 40.909 0.00 0.00 0.00 3.18
2221 2429 3.567164 GCCTCCATATGACATGAGTTTGG 59.433 47.826 3.65 0.00 0.00 3.28
2225 2433 1.345741 CGGCCTCCATATGACATGAGT 59.654 52.381 3.65 0.00 0.00 3.41
2237 2445 5.560722 TTATCAGAATTAATCGGCCTCCA 57.439 39.130 0.00 0.00 0.00 3.86
2264 2472 6.491714 AACATAGGCATACTCATGAGAACT 57.508 37.500 29.27 18.59 33.67 3.01
2272 2480 6.299805 ACAAGAGAAACATAGGCATACTCA 57.700 37.500 0.00 0.00 0.00 3.41
2329 2537 5.068234 TCGTGATCGATAAAAGTCCAGTT 57.932 39.130 0.00 0.00 41.35 3.16
2415 2623 1.758592 CCCCTTGGTCTTTCGGTCA 59.241 57.895 0.00 0.00 0.00 4.02
2479 2687 5.597182 ACCGATAACTTCTATAGCCACTTGA 59.403 40.000 0.00 0.00 0.00 3.02
2489 2697 5.366460 TCAGTCTCGACCGATAACTTCTAT 58.634 41.667 5.29 0.00 0.00 1.98
2491 2699 3.607741 TCAGTCTCGACCGATAACTTCT 58.392 45.455 5.29 0.00 0.00 2.85
2535 2743 4.737855 TGGAGTGAAGATACTTGCTACC 57.262 45.455 0.00 0.00 0.00 3.18
2573 2781 4.056125 TCAGTCGGCCTCGCTGTG 62.056 66.667 14.77 0.00 39.60 3.66
2600 2808 3.198635 TGACTCTCATAAGCCCTTTCCAG 59.801 47.826 0.00 0.00 0.00 3.86
2687 2897 2.303175 GTCTCTCCGAGCCAAGTATCT 58.697 52.381 0.00 0.00 0.00 1.98
2771 2981 3.626217 GGGAATGGATTGAAGTACCGTTC 59.374 47.826 0.00 0.00 44.29 3.95
2808 3018 2.203308 CCGGCTAGCGTCCTCCTA 60.203 66.667 9.00 0.00 0.00 2.94
3058 3268 4.599047 TTGCCAAATTGTCCTTGGTTAG 57.401 40.909 3.70 0.00 44.46 2.34
3186 3396 9.066892 GGAGGAGTAATATTAAATGCAATGTGA 57.933 33.333 0.00 0.00 0.00 3.58
3239 3449 2.429610 GACTCTATCCCGTTAAGCCACA 59.570 50.000 0.00 0.00 0.00 4.17
3262 3472 2.598907 CGCGAATGTGTCTCGTTGTTTT 60.599 45.455 0.00 0.00 38.57 2.43
3312 3522 4.344679 ACCAAATCATTTCTGCAGTTCCAA 59.655 37.500 14.67 3.33 0.00 3.53
3686 3901 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
3726 3941 4.988540 TGACGTTCTCTGAACACCTTAATG 59.011 41.667 10.46 0.00 0.00 1.90
3727 3942 4.989168 GTGACGTTCTCTGAACACCTTAAT 59.011 41.667 10.46 0.00 0.00 1.40
3729 3944 3.243636 GGTGACGTTCTCTGAACACCTTA 60.244 47.826 10.59 0.00 42.73 2.69
3730 3945 2.483188 GGTGACGTTCTCTGAACACCTT 60.483 50.000 10.59 0.00 42.73 3.50
3731 3946 1.068741 GGTGACGTTCTCTGAACACCT 59.931 52.381 10.59 0.00 42.73 4.00
3732 3947 1.202486 TGGTGACGTTCTCTGAACACC 60.202 52.381 10.87 10.87 45.16 4.16
3733 3948 2.128035 CTGGTGACGTTCTCTGAACAC 58.872 52.381 10.46 0.00 0.00 3.32
3734 3949 1.754803 ACTGGTGACGTTCTCTGAACA 59.245 47.619 10.46 0.00 0.00 3.18
3735 3950 2.510768 ACTGGTGACGTTCTCTGAAC 57.489 50.000 0.00 0.77 0.00 3.18
3736 3951 3.194861 CAAACTGGTGACGTTCTCTGAA 58.805 45.455 0.00 0.00 0.00 3.02
3737 3952 2.821546 CAAACTGGTGACGTTCTCTGA 58.178 47.619 0.00 0.00 0.00 3.27
3738 3953 1.261619 GCAAACTGGTGACGTTCTCTG 59.738 52.381 0.00 0.00 0.00 3.35
3739 3954 1.583054 GCAAACTGGTGACGTTCTCT 58.417 50.000 0.00 0.00 0.00 3.10
3740 3955 0.586802 GGCAAACTGGTGACGTTCTC 59.413 55.000 0.00 0.00 0.00 2.87
3741 3956 0.107410 TGGCAAACTGGTGACGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
3742 3957 0.736053 TTGGCAAACTGGTGACGTTC 59.264 50.000 0.00 0.00 0.00 3.95
3743 3958 1.135228 GTTTGGCAAACTGGTGACGTT 60.135 47.619 30.54 0.00 38.35 3.99
3777 3992 1.420138 ACGTCTTGGACCCATGTCTTT 59.580 47.619 0.00 0.00 41.47 2.52
3790 4005 4.635925 ACGCTCACTCACGTCTTG 57.364 55.556 0.00 0.00 38.28 3.02
3853 4068 2.231529 CACCCGAGGATCTACAGGTAG 58.768 57.143 0.00 0.00 34.56 3.18
3856 4071 1.742768 GCACCCGAGGATCTACAGG 59.257 63.158 0.00 0.00 0.00 4.00
3969 4184 3.255149 ACACCACTCTAAGAGGTTGTACG 59.745 47.826 1.92 0.00 37.06 3.67
3975 4190 5.334421 ACAATAGACACCACTCTAAGAGGT 58.666 41.667 0.36 0.36 39.87 3.85
4059 4278 4.588528 ACCAAAACCTTGCAGTCATATTGT 59.411 37.500 0.00 0.00 0.00 2.71
4080 4299 4.222124 AGGTCTTTGTGATATGGACACC 57.778 45.455 0.00 0.00 37.45 4.16
4141 4361 1.586154 CGGGTTGGTTGTGGCATCTC 61.586 60.000 0.00 0.00 0.00 2.75
4160 4380 0.179134 ATCTTGCGCCTCGTCAGTAC 60.179 55.000 4.18 0.00 0.00 2.73
4233 4455 5.879763 ACTATGCATACAATAGGGATTGCA 58.120 37.500 1.16 0.00 45.52 4.08
4414 4644 5.163513 GTTGGTTATCTGGAAATGCACAAG 58.836 41.667 0.00 0.00 0.00 3.16
4459 4689 3.508012 AGCTACTGTCTCAATTCTCGTGT 59.492 43.478 0.00 0.00 0.00 4.49
4587 4817 5.880054 TTCGAAATCTCTTCCAATGGTTC 57.120 39.130 0.00 0.00 0.00 3.62
4646 4876 6.299604 CAAAAGACTAGCAATACTGACAACG 58.700 40.000 0.00 0.00 0.00 4.10
4706 4939 3.885297 AGCTTAAAGAACTGCACACATGT 59.115 39.130 0.00 0.00 0.00 3.21
4865 5098 2.355756 CACCCATTGCCTTACAAGATCG 59.644 50.000 0.00 0.00 42.87 3.69
4931 5164 5.479306 TCATTAAAGCAACTTCTAGCGACT 58.521 37.500 0.00 0.00 35.48 4.18
4938 5171 5.532406 TGACAAGCTCATTAAAGCAACTTCT 59.468 36.000 2.15 0.00 45.00 2.85
4965 5198 1.484653 TGTAGGTTGGATCATGGTCCG 59.515 52.381 20.17 0.00 41.35 4.79
4969 5202 5.532406 CCAATAGTTGTAGGTTGGATCATGG 59.468 44.000 0.00 0.00 42.88 3.66
4987 5324 4.408921 TGACCTCTCCATTGTACCCAATAG 59.591 45.833 0.00 0.00 39.28 1.73
5004 5341 8.492673 TCATGAACTTTACATGTTATGACCTC 57.507 34.615 2.30 0.00 43.56 3.85
5164 5501 0.322456 TGCCAGTACCATGCCTTCAC 60.322 55.000 0.00 0.00 0.00 3.18
5173 5510 1.073125 TGCTTAAGCTTGCCAGTACCA 59.927 47.619 26.90 0.23 42.66 3.25
5174 5511 1.821216 TGCTTAAGCTTGCCAGTACC 58.179 50.000 26.90 0.00 42.66 3.34
5230 5567 7.320443 TCATACATAGACAACTTGAAATGGC 57.680 36.000 0.00 0.00 0.00 4.40
5233 5570 9.725019 TGAGTTCATACATAGACAACTTGAAAT 57.275 29.630 0.00 0.00 0.00 2.17
5274 5611 3.509575 GCACCCTGACAATCCACATTAAA 59.490 43.478 0.00 0.00 0.00 1.52
5322 5659 9.573133 GAGTTGAAATAATTTACAGATTGGTGG 57.427 33.333 0.00 0.00 0.00 4.61
5408 5778 3.306919 CCAAATGTTTCAGGTCCCCAATG 60.307 47.826 0.00 0.00 0.00 2.82
5441 5811 5.554437 TGGCAGTAATATCCGTATCCAAA 57.446 39.130 0.00 0.00 0.00 3.28
5496 5875 4.040829 TCCCATAGGAACATGTAGATGCAG 59.959 45.833 0.00 0.00 40.08 4.41
5549 5928 1.192428 CCAGAGTACGTAGGGCCTTT 58.808 55.000 13.45 0.00 0.00 3.11
5550 5929 0.040794 ACCAGAGTACGTAGGGCCTT 59.959 55.000 13.45 0.00 0.00 4.35
5633 6013 7.255695 CCATGGCAGCAAAAATCAAGATATCTA 60.256 37.037 5.46 0.00 0.00 1.98
5636 6016 5.129815 ACCATGGCAGCAAAAATCAAGATAT 59.870 36.000 13.04 0.00 0.00 1.63
5655 6035 7.125755 CGTATAAGTATTTGTTCAGCACCATG 58.874 38.462 0.00 0.00 0.00 3.66
5659 6039 6.345920 AGCGTATAAGTATTTGTTCAGCAC 57.654 37.500 0.00 0.00 0.00 4.40
5818 6236 6.072452 TCCGTTGTGCAATGTGATATAAAACA 60.072 34.615 0.00 0.00 0.00 2.83
6040 6458 9.525826 GGGATGTCTCCAATATTGATTAAATCT 57.474 33.333 17.23 0.00 44.08 2.40
6054 6472 0.613260 CGACCTTGGGATGTCTCCAA 59.387 55.000 0.00 0.00 44.08 3.53
6114 6533 6.591834 CACCTTTGTGAACAAACCACATAAAA 59.408 34.615 4.52 0.00 45.76 1.52
6351 6770 3.244181 TGACTCTGATTTGTGCAGCTGTA 60.244 43.478 16.64 8.31 33.45 2.74
6589 7008 6.708285 AGATTTGAACGGTATTCTAACACCT 58.292 36.000 0.00 0.00 32.29 4.00
6593 7012 8.252964 ACAGAAGATTTGAACGGTATTCTAAC 57.747 34.615 0.00 0.00 0.00 2.34
6594 7013 9.932207 TTACAGAAGATTTGAACGGTATTCTAA 57.068 29.630 0.00 0.00 0.00 2.10
6596 7015 9.099454 GATTACAGAAGATTTGAACGGTATTCT 57.901 33.333 0.00 0.00 0.00 2.40
6597 7016 9.099454 AGATTACAGAAGATTTGAACGGTATTC 57.901 33.333 0.00 0.00 0.00 1.75
6600 7019 9.932207 TTTAGATTACAGAAGATTTGAACGGTA 57.068 29.630 0.00 0.00 0.00 4.02
6601 7020 8.718734 GTTTAGATTACAGAAGATTTGAACGGT 58.281 33.333 0.00 0.00 0.00 4.83
6602 7021 8.175716 GGTTTAGATTACAGAAGATTTGAACGG 58.824 37.037 0.00 0.00 0.00 4.44
6603 7022 8.936864 AGGTTTAGATTACAGAAGATTTGAACG 58.063 33.333 0.00 0.00 0.00 3.95
6606 7025 9.877178 GAGAGGTTTAGATTACAGAAGATTTGA 57.123 33.333 0.00 0.00 0.00 2.69
6607 7026 9.883142 AGAGAGGTTTAGATTACAGAAGATTTG 57.117 33.333 0.00 0.00 0.00 2.32
6609 7028 9.487442 AGAGAGAGGTTTAGATTACAGAAGATT 57.513 33.333 0.00 0.00 0.00 2.40
6614 7033 9.787435 GAGATAGAGAGAGGTTTAGATTACAGA 57.213 37.037 0.00 0.00 0.00 3.41
6615 7034 9.793259 AGAGATAGAGAGAGGTTTAGATTACAG 57.207 37.037 0.00 0.00 0.00 2.74
6619 7038 9.936329 AAGAAGAGATAGAGAGAGGTTTAGATT 57.064 33.333 0.00 0.00 0.00 2.40
6620 7039 9.574516 GAAGAAGAGATAGAGAGAGGTTTAGAT 57.425 37.037 0.00 0.00 0.00 1.98
6621 7040 8.778059 AGAAGAAGAGATAGAGAGAGGTTTAGA 58.222 37.037 0.00 0.00 0.00 2.10
6622 7041 8.980481 AGAAGAAGAGATAGAGAGAGGTTTAG 57.020 38.462 0.00 0.00 0.00 1.85
6623 7042 8.778059 AGAGAAGAAGAGATAGAGAGAGGTTTA 58.222 37.037 0.00 0.00 0.00 2.01
6624 7043 7.643123 AGAGAAGAAGAGATAGAGAGAGGTTT 58.357 38.462 0.00 0.00 0.00 3.27
6625 7044 7.213178 AGAGAAGAAGAGATAGAGAGAGGTT 57.787 40.000 0.00 0.00 0.00 3.50
6626 7045 6.463049 CGAGAGAAGAAGAGATAGAGAGAGGT 60.463 46.154 0.00 0.00 0.00 3.85
6627 7046 5.928839 CGAGAGAAGAAGAGATAGAGAGAGG 59.071 48.000 0.00 0.00 0.00 3.69
6628 7047 5.928839 CCGAGAGAAGAAGAGATAGAGAGAG 59.071 48.000 0.00 0.00 0.00 3.20
6629 7048 5.365605 ACCGAGAGAAGAAGAGATAGAGAGA 59.634 44.000 0.00 0.00 0.00 3.10
6630 7049 5.611374 ACCGAGAGAAGAAGAGATAGAGAG 58.389 45.833 0.00 0.00 0.00 3.20
6631 7050 5.623956 ACCGAGAGAAGAAGAGATAGAGA 57.376 43.478 0.00 0.00 0.00 3.10
6632 7051 5.238650 GGAACCGAGAGAAGAAGAGATAGAG 59.761 48.000 0.00 0.00 0.00 2.43
6633 7052 5.104277 AGGAACCGAGAGAAGAAGAGATAGA 60.104 44.000 0.00 0.00 0.00 1.98
6634 7053 5.130350 AGGAACCGAGAGAAGAAGAGATAG 58.870 45.833 0.00 0.00 0.00 2.08
6635 7054 5.118729 AGGAACCGAGAGAAGAAGAGATA 57.881 43.478 0.00 0.00 0.00 1.98
6636 7055 3.976015 AGGAACCGAGAGAAGAAGAGAT 58.024 45.455 0.00 0.00 0.00 2.75
6637 7056 3.443145 AGGAACCGAGAGAAGAAGAGA 57.557 47.619 0.00 0.00 0.00 3.10
6638 7057 5.592688 AGAATAGGAACCGAGAGAAGAAGAG 59.407 44.000 0.00 0.00 0.00 2.85
6639 7058 5.358442 CAGAATAGGAACCGAGAGAAGAAGA 59.642 44.000 0.00 0.00 0.00 2.87
6640 7059 5.358442 TCAGAATAGGAACCGAGAGAAGAAG 59.642 44.000 0.00 0.00 0.00 2.85
6641 7060 5.125739 GTCAGAATAGGAACCGAGAGAAGAA 59.874 44.000 0.00 0.00 0.00 2.52
6642 7061 4.641094 GTCAGAATAGGAACCGAGAGAAGA 59.359 45.833 0.00 0.00 0.00 2.87
6643 7062 4.642885 AGTCAGAATAGGAACCGAGAGAAG 59.357 45.833 0.00 0.00 0.00 2.85
6644 7063 4.601084 AGTCAGAATAGGAACCGAGAGAA 58.399 43.478 0.00 0.00 0.00 2.87
6645 7064 4.080243 AGAGTCAGAATAGGAACCGAGAGA 60.080 45.833 0.00 0.00 0.00 3.10
6646 7065 4.204012 AGAGTCAGAATAGGAACCGAGAG 58.796 47.826 0.00 0.00 0.00 3.20
6647 7066 4.237976 AGAGTCAGAATAGGAACCGAGA 57.762 45.455 0.00 0.00 0.00 4.04
6648 7067 4.993029 AAGAGTCAGAATAGGAACCGAG 57.007 45.455 0.00 0.00 0.00 4.63
6649 7068 6.380274 ACATAAAGAGTCAGAATAGGAACCGA 59.620 38.462 0.00 0.00 0.00 4.69
6650 7069 6.574350 ACATAAAGAGTCAGAATAGGAACCG 58.426 40.000 0.00 0.00 0.00 4.44
6651 7070 9.699703 GATACATAAAGAGTCAGAATAGGAACC 57.300 37.037 0.00 0.00 0.00 3.62
6652 7071 9.400638 CGATACATAAAGAGTCAGAATAGGAAC 57.599 37.037 0.00 0.00 0.00 3.62
6653 7072 9.350951 TCGATACATAAAGAGTCAGAATAGGAA 57.649 33.333 0.00 0.00 0.00 3.36
6654 7073 8.919777 TCGATACATAAAGAGTCAGAATAGGA 57.080 34.615 0.00 0.00 0.00 2.94
6655 7074 9.566530 CATCGATACATAAAGAGTCAGAATAGG 57.433 37.037 0.00 0.00 0.00 2.57
6658 7077 8.855110 ACTCATCGATACATAAAGAGTCAGAAT 58.145 33.333 0.00 0.00 29.60 2.40
6659 7078 8.226819 ACTCATCGATACATAAAGAGTCAGAA 57.773 34.615 0.00 0.00 29.60 3.02
6660 7079 7.809546 ACTCATCGATACATAAAGAGTCAGA 57.190 36.000 0.00 0.00 29.60 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.