Multiple sequence alignment - TraesCS7D01G525300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G525300 chr7D 100.000 2615 0 0 1 2615 621158761 621161375 0.000000e+00 4830.0
1 TraesCS7D01G525300 chr7D 88.434 2222 177 35 356 2534 621203452 621205636 0.000000e+00 2606.0
2 TraesCS7D01G525300 chr7D 96.587 586 18 2 1188 1772 621212699 621213283 0.000000e+00 970.0
3 TraesCS7D01G525300 chr7D 93.814 291 18 0 2004 2294 621213279 621213569 3.090000e-119 438.0
4 TraesCS7D01G525300 chr7D 87.248 149 18 1 1 148 621202956 621203104 4.480000e-38 169.0
5 TraesCS7D01G525300 chr7D 98.387 62 1 0 138 199 621158847 621158908 2.750000e-20 110.0
6 TraesCS7D01G525300 chr7D 98.387 62 1 0 87 148 621158898 621158959 2.750000e-20 110.0
7 TraesCS7D01G525300 chr7D 100.000 41 0 0 1 41 621212661 621212701 2.790000e-10 76.8
8 TraesCS7D01G525300 chr7A 95.518 1071 29 3 1225 2294 715781411 715780359 0.000000e+00 1694.0
9 TraesCS7D01G525300 chr7A 89.263 1099 89 15 412 1491 715925503 715924415 0.000000e+00 1349.0
10 TraesCS7D01G525300 chr7A 85.351 1140 116 24 139 1236 715785362 715784232 0.000000e+00 1133.0
11 TraesCS7D01G525300 chr7A 89.865 148 14 1 1 148 715787554 715787408 3.440000e-44 189.0
12 TraesCS7D01G525300 chr7A 87.742 155 12 4 1 148 715925753 715925599 9.620000e-40 174.0
13 TraesCS7D01G525300 chr2B 80.838 1456 223 35 258 1677 669191526 669192961 0.000000e+00 1092.0
14 TraesCS7D01G525300 chr2A 80.191 1464 233 33 258 1680 700672854 700671407 0.000000e+00 1044.0
15 TraesCS7D01G525300 chr2A 90.541 148 14 0 1 148 375771142 375771289 2.050000e-46 196.0
16 TraesCS7D01G525300 chr2D 78.309 1715 293 46 1 1680 560865738 560864068 0.000000e+00 1033.0
17 TraesCS7D01G525300 chr7B 81.135 1357 173 45 139 1458 717226285 717224975 0.000000e+00 1011.0
18 TraesCS7D01G525300 chr7B 80.914 1357 176 45 139 1458 717150813 717149503 0.000000e+00 994.0
19 TraesCS7D01G525300 chr7B 95.000 320 14 2 1454 1772 717149248 717148930 3.890000e-138 501.0
20 TraesCS7D01G525300 chr7B 95.000 320 14 2 1454 1772 717224720 717224402 3.890000e-138 501.0
21 TraesCS7D01G525300 chr7B 92.177 294 22 1 2007 2300 717148931 717148639 5.210000e-112 414.0
22 TraesCS7D01G525300 chr7B 92.177 294 22 1 2007 2300 717224403 717224111 5.210000e-112 414.0
23 TraesCS7D01G525300 chr7B 90.541 148 14 0 1 148 543914130 543913983 2.050000e-46 196.0
24 TraesCS7D01G525300 chr7B 89.189 148 16 0 1 148 717226372 717226225 4.440000e-43 185.0
25 TraesCS7D01G525300 chr7B 88.514 148 17 0 1 148 717150900 717150753 2.070000e-41 180.0
26 TraesCS7D01G525300 chr3D 92.617 149 10 1 1 148 12941436 12941584 2.040000e-51 213.0
27 TraesCS7D01G525300 chr5D 82.883 222 26 6 141 350 541266543 541266764 3.440000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G525300 chr7D 621158761 621161375 2614 False 1683.333333 4830 98.924667 1 2615 3 chr7D.!!$F1 2614
1 TraesCS7D01G525300 chr7D 621202956 621205636 2680 False 1387.500000 2606 87.841000 1 2534 2 chr7D.!!$F2 2533
2 TraesCS7D01G525300 chr7D 621212661 621213569 908 False 494.933333 970 96.800333 1 2294 3 chr7D.!!$F3 2293
3 TraesCS7D01G525300 chr7A 715780359 715787554 7195 True 1005.333333 1694 90.244667 1 2294 3 chr7A.!!$R1 2293
4 TraesCS7D01G525300 chr7A 715924415 715925753 1338 True 761.500000 1349 88.502500 1 1491 2 chr7A.!!$R2 1490
5 TraesCS7D01G525300 chr2B 669191526 669192961 1435 False 1092.000000 1092 80.838000 258 1677 1 chr2B.!!$F1 1419
6 TraesCS7D01G525300 chr2A 700671407 700672854 1447 True 1044.000000 1044 80.191000 258 1680 1 chr2A.!!$R1 1422
7 TraesCS7D01G525300 chr2D 560864068 560865738 1670 True 1033.000000 1033 78.309000 1 1680 1 chr2D.!!$R1 1679
8 TraesCS7D01G525300 chr7B 717224111 717226372 2261 True 527.750000 1011 89.375250 1 2300 4 chr7B.!!$R3 2299
9 TraesCS7D01G525300 chr7B 717148639 717150900 2261 True 522.250000 994 89.151250 1 2300 4 chr7B.!!$R2 2299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 3128 0.095417 GTGAGTGATTCGAAAGCCGC 59.905 55.0 0.0 1.42 38.37 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 8019 1.067142 AGCATTGCCACTGAATTGCTG 60.067 47.619 4.7 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.749310 CCTCGAGCTGCGCCAGTT 62.749 66.667 6.99 0.00 40.61 3.16
108 110 2.403987 CGCTACTCCCTCGTCGTG 59.596 66.667 0.00 0.00 0.00 4.35
159 2216 1.351012 CCGCTACTACCTCGTCGTG 59.649 63.158 0.00 0.00 0.00 4.35
174 2231 2.509336 GTGGACACCCTCGCGATG 60.509 66.667 10.36 8.16 0.00 3.84
269 2359 3.003173 CACGCCCCTCCTCTTCCA 61.003 66.667 0.00 0.00 0.00 3.53
281 2371 4.778143 CTTCCACTTCCCGGCGGG 62.778 72.222 38.92 38.92 46.11 6.13
340 2430 3.787001 GGGTCTCCGGCCTCCAAG 61.787 72.222 0.00 0.00 0.00 3.61
488 2751 2.261671 GGGCATCAGTCGTGTCGT 59.738 61.111 0.00 0.00 0.00 4.34
494 2757 0.803117 ATCAGTCGTGTCGTCGTGAT 59.197 50.000 0.00 0.00 0.00 3.06
500 2763 1.372997 GTGTCGTCGTGATGGCAGT 60.373 57.895 0.00 0.00 31.86 4.40
545 2808 1.630148 GTCACCATCGTAGACTGCAC 58.370 55.000 0.00 0.00 42.51 4.57
649 2918 4.595538 ACGCCTTGTTCGCCGACA 62.596 61.111 0.00 0.00 0.00 4.35
739 3046 5.500234 TGGATTCTTCAGAAGTTACCATGG 58.500 41.667 11.19 11.19 37.48 3.66
742 3049 7.127186 TGGATTCTTCAGAAGTTACCATGGATA 59.873 37.037 21.47 4.21 37.48 2.59
802 3113 4.153117 GCACTTTATCAGGTGTTCAGTGAG 59.847 45.833 0.00 0.00 33.44 3.51
805 3116 5.070446 ACTTTATCAGGTGTTCAGTGAGTGA 59.930 40.000 0.00 0.00 0.00 3.41
817 3128 0.095417 GTGAGTGATTCGAAAGCCGC 59.905 55.000 0.00 1.42 38.37 6.53
818 3129 0.320334 TGAGTGATTCGAAAGCCGCA 60.320 50.000 0.00 0.00 38.37 5.69
894 3205 3.479489 TGCATTTCTCAGCTGAACTTCA 58.521 40.909 18.85 8.23 0.00 3.02
927 3239 4.100529 CGATGTTTGAAATCATGGACTGC 58.899 43.478 0.00 0.00 0.00 4.40
988 3308 2.789208 CTTAATGCAACCTCACATGCG 58.211 47.619 0.00 0.00 45.47 4.73
1005 3326 2.919043 GGATCGGCCAAGATGGGT 59.081 61.111 2.24 0.00 38.19 4.51
1011 3333 1.076549 GGCCAAGATGGGTGGTGAA 59.923 57.895 0.00 0.00 38.19 3.18
1261 6424 8.833493 CATCATAATGCTTCTAAAGTGATCACA 58.167 33.333 27.02 6.41 0.00 3.58
1450 6620 7.563188 TGAGGAAGACTAGCTCTCTTCATAAAT 59.437 37.037 24.97 12.09 43.79 1.40
1541 6970 1.136147 CAGAAGCTGTGGCGAATGC 59.864 57.895 0.00 0.00 44.37 3.56
1567 6996 5.140747 AGTAATTCTCAGTGTGTCTGACC 57.859 43.478 5.17 0.00 46.77 4.02
1780 7210 6.678878 CAAGCTAATAATGATGCAGCTCATT 58.321 36.000 17.30 17.30 45.44 2.57
1858 7288 8.474025 AGGATAATAGATCTATTGTAGTGCTGC 58.526 37.037 30.14 14.28 36.52 5.25
2148 7596 7.488150 TCTCTATGCTGTTTTGTATAGTCAACG 59.512 37.037 0.00 0.00 35.24 4.10
2168 7616 5.376854 ACGATTGAGATTCCCTGTTTTTG 57.623 39.130 0.00 0.00 0.00 2.44
2210 7658 2.325583 TTGTTTCGTGAGCAACCTCT 57.674 45.000 0.00 0.00 36.37 3.69
2233 7681 8.169977 TCTTTGCTCTTTCAGATATTGTTTGT 57.830 30.769 0.00 0.00 0.00 2.83
2294 7742 7.372451 TGTAGGTATGAACTATTTGTTGCAC 57.628 36.000 0.00 0.00 39.30 4.57
2308 7756 6.981762 TTTGTTGCACATTCATTTTGTCTT 57.018 29.167 0.00 0.00 0.00 3.01
2369 7817 2.216046 TGTTTCAGCTGAACTGCTCTG 58.784 47.619 28.46 0.00 46.76 3.35
2378 7826 1.070758 TGAACTGCTCTGAGGGACAAC 59.929 52.381 6.83 0.00 0.00 3.32
2380 7828 1.428869 ACTGCTCTGAGGGACAACTT 58.571 50.000 6.83 0.00 0.00 2.66
2381 7829 2.609747 ACTGCTCTGAGGGACAACTTA 58.390 47.619 6.83 0.00 0.00 2.24
2428 7876 8.440059 GGTGTTAAACATAATTTTTAAGCTGCC 58.560 33.333 0.00 0.00 30.80 4.85
2444 7892 3.131755 AGCTGCCAGATTATTCCAAAAGC 59.868 43.478 0.00 0.00 0.00 3.51
2445 7893 3.119029 GCTGCCAGATTATTCCAAAAGCA 60.119 43.478 0.00 0.00 0.00 3.91
2536 7984 8.525290 AGTTTTCCCTGTATCAAATCAATAGG 57.475 34.615 0.00 0.00 0.00 2.57
2537 7985 6.959639 TTTCCCTGTATCAAATCAATAGGC 57.040 37.500 0.00 0.00 0.00 3.93
2538 7986 5.912149 TCCCTGTATCAAATCAATAGGCT 57.088 39.130 0.00 0.00 0.00 4.58
2539 7987 5.869579 TCCCTGTATCAAATCAATAGGCTC 58.130 41.667 0.00 0.00 0.00 4.70
2540 7988 5.608437 TCCCTGTATCAAATCAATAGGCTCT 59.392 40.000 0.00 0.00 0.00 4.09
2541 7989 5.936956 CCCTGTATCAAATCAATAGGCTCTC 59.063 44.000 0.00 0.00 0.00 3.20
2542 7990 6.464892 CCCTGTATCAAATCAATAGGCTCTCA 60.465 42.308 0.00 0.00 0.00 3.27
2543 7991 6.649973 CCTGTATCAAATCAATAGGCTCTCAG 59.350 42.308 0.00 0.00 0.00 3.35
2544 7992 7.129457 TGTATCAAATCAATAGGCTCTCAGT 57.871 36.000 0.00 0.00 0.00 3.41
2545 7993 6.988580 TGTATCAAATCAATAGGCTCTCAGTG 59.011 38.462 0.00 0.00 0.00 3.66
2546 7994 5.682234 TCAAATCAATAGGCTCTCAGTGA 57.318 39.130 0.00 0.00 0.00 3.41
2547 7995 6.053632 TCAAATCAATAGGCTCTCAGTGAA 57.946 37.500 0.00 0.00 0.00 3.18
2548 7996 6.656902 TCAAATCAATAGGCTCTCAGTGAAT 58.343 36.000 0.00 0.00 0.00 2.57
2549 7997 7.114754 TCAAATCAATAGGCTCTCAGTGAATT 58.885 34.615 0.00 0.00 0.00 2.17
2550 7998 7.613022 TCAAATCAATAGGCTCTCAGTGAATTT 59.387 33.333 0.00 0.00 0.00 1.82
2551 7999 7.951347 AATCAATAGGCTCTCAGTGAATTTT 57.049 32.000 0.00 0.00 0.00 1.82
2552 8000 7.951347 ATCAATAGGCTCTCAGTGAATTTTT 57.049 32.000 0.00 0.00 0.00 1.94
2580 8028 5.422666 CAGTTTGTCTGTACAGCAATTCA 57.577 39.130 23.92 12.92 39.17 2.57
2581 8029 5.446709 CAGTTTGTCTGTACAGCAATTCAG 58.553 41.667 23.92 16.26 39.17 3.02
2582 8030 5.008019 CAGTTTGTCTGTACAGCAATTCAGT 59.992 40.000 23.92 14.44 39.17 3.41
2583 8031 5.008019 AGTTTGTCTGTACAGCAATTCAGTG 59.992 40.000 23.92 0.48 36.83 3.66
2584 8032 3.402110 TGTCTGTACAGCAATTCAGTGG 58.598 45.455 18.45 0.00 0.00 4.00
2585 8033 2.160417 GTCTGTACAGCAATTCAGTGGC 59.840 50.000 18.45 0.00 0.00 5.01
2586 8034 2.153645 CTGTACAGCAATTCAGTGGCA 58.846 47.619 10.54 0.00 0.00 4.92
2587 8035 2.553602 CTGTACAGCAATTCAGTGGCAA 59.446 45.455 10.54 0.00 0.00 4.52
2588 8036 3.156293 TGTACAGCAATTCAGTGGCAAT 58.844 40.909 0.00 0.00 0.00 3.56
2589 8037 2.736144 ACAGCAATTCAGTGGCAATG 57.264 45.000 8.96 8.96 0.00 2.82
2590 8038 1.337447 ACAGCAATTCAGTGGCAATGC 60.337 47.619 10.58 0.00 0.00 3.56
2591 8039 1.067142 CAGCAATTCAGTGGCAATGCT 60.067 47.619 10.58 6.69 0.00 3.79
2592 8040 1.203994 AGCAATTCAGTGGCAATGCTC 59.796 47.619 10.58 0.00 0.00 4.26
2593 8041 1.738030 GCAATTCAGTGGCAATGCTCC 60.738 52.381 10.58 0.00 0.00 4.70
2594 8042 1.546923 CAATTCAGTGGCAATGCTCCA 59.453 47.619 10.58 0.00 0.00 3.86
2595 8043 2.154567 ATTCAGTGGCAATGCTCCAT 57.845 45.000 10.58 0.00 35.81 3.41
2596 8044 2.804986 TTCAGTGGCAATGCTCCATA 57.195 45.000 10.58 0.00 35.81 2.74
2597 8045 2.804986 TCAGTGGCAATGCTCCATAA 57.195 45.000 10.58 0.00 35.81 1.90
2598 8046 3.084536 TCAGTGGCAATGCTCCATAAA 57.915 42.857 10.58 0.00 35.81 1.40
2599 8047 3.634504 TCAGTGGCAATGCTCCATAAAT 58.365 40.909 10.58 0.00 35.81 1.40
2600 8048 4.790937 TCAGTGGCAATGCTCCATAAATA 58.209 39.130 10.58 0.00 35.81 1.40
2601 8049 5.199723 TCAGTGGCAATGCTCCATAAATAA 58.800 37.500 10.58 0.00 35.81 1.40
2602 8050 5.067674 TCAGTGGCAATGCTCCATAAATAAC 59.932 40.000 10.58 0.00 35.81 1.89
2603 8051 4.342092 AGTGGCAATGCTCCATAAATAACC 59.658 41.667 4.82 0.00 35.81 2.85
2604 8052 3.640967 TGGCAATGCTCCATAAATAACCC 59.359 43.478 4.82 0.00 0.00 4.11
2605 8053 3.897505 GGCAATGCTCCATAAATAACCCT 59.102 43.478 4.82 0.00 0.00 4.34
2606 8054 4.344968 GGCAATGCTCCATAAATAACCCTT 59.655 41.667 4.82 0.00 0.00 3.95
2607 8055 5.163311 GGCAATGCTCCATAAATAACCCTTT 60.163 40.000 4.82 0.00 0.00 3.11
2608 8056 6.348498 GCAATGCTCCATAAATAACCCTTTT 58.652 36.000 0.00 0.00 0.00 2.27
2609 8057 6.258507 GCAATGCTCCATAAATAACCCTTTTG 59.741 38.462 0.00 0.00 0.00 2.44
2610 8058 7.330262 CAATGCTCCATAAATAACCCTTTTGT 58.670 34.615 0.00 0.00 0.00 2.83
2611 8059 6.279513 TGCTCCATAAATAACCCTTTTGTG 57.720 37.500 0.00 0.00 0.00 3.33
2612 8060 5.777732 TGCTCCATAAATAACCCTTTTGTGT 59.222 36.000 0.00 0.00 0.00 3.72
2613 8061 6.071616 TGCTCCATAAATAACCCTTTTGTGTC 60.072 38.462 0.00 0.00 0.00 3.67
2614 8062 6.071616 GCTCCATAAATAACCCTTTTGTGTCA 60.072 38.462 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 2206 3.300765 GGGTGTCCACGACGAGGT 61.301 66.667 11.21 0.00 34.95 3.85
375 2623 2.851801 ACGGAGTGGAGGAGGACA 59.148 61.111 0.00 0.00 42.51 4.02
405 2653 1.457643 CATCCTCGCCAGGTCCCTA 60.458 63.158 0.00 0.00 41.28 3.53
488 2751 1.221566 CCCATCACTGCCATCACGA 59.778 57.895 0.00 0.00 0.00 4.35
494 2757 2.934932 TGAGCCCCATCACTGCCA 60.935 61.111 0.00 0.00 0.00 4.92
545 2808 4.181010 CCACCCCGATGAGGCAGG 62.181 72.222 0.00 0.00 39.21 4.85
611 2874 1.300481 GCCGGGCAGATAGAAGAAAC 58.700 55.000 15.62 0.00 0.00 2.78
612 2875 0.179084 CGCCGGGCAGATAGAAGAAA 60.179 55.000 20.71 0.00 0.00 2.52
774 3084 1.806542 ACACCTGATAAAGTGCAAGCG 59.193 47.619 0.00 0.00 37.51 4.68
775 3085 3.253188 TGAACACCTGATAAAGTGCAAGC 59.747 43.478 0.00 0.00 37.51 4.01
802 3113 1.913403 CAAATGCGGCTTTCGAATCAC 59.087 47.619 0.00 0.00 35.75 3.06
805 3116 3.034569 GCAAATGCGGCTTTCGAAT 57.965 47.368 0.00 0.00 39.19 3.34
817 3128 3.492313 GGTAGCGAGTTTTGAGCAAATG 58.508 45.455 0.00 0.00 0.00 2.32
818 3129 2.488153 GGGTAGCGAGTTTTGAGCAAAT 59.512 45.455 0.00 0.00 0.00 2.32
894 3205 7.199766 TGATTTCAAACATCGCAAACTAAACT 58.800 30.769 0.00 0.00 0.00 2.66
927 3239 5.649782 AGATGGCATTCAAGGTTAACAAG 57.350 39.130 8.10 0.00 0.00 3.16
988 3308 1.526917 CACCCATCTTGGCCGATCC 60.527 63.158 0.00 0.00 35.79 3.36
1005 3326 2.559698 TGCTCCGAAAGAATTCACCA 57.440 45.000 8.44 0.00 35.15 4.17
1011 3333 3.616956 TCTGTCATGCTCCGAAAGAAT 57.383 42.857 0.00 0.00 0.00 2.40
1100 3422 3.181467 CCTCTCCAGATTAGAACAGCCTG 60.181 52.174 0.00 0.00 0.00 4.85
1101 3423 3.037549 CCTCTCCAGATTAGAACAGCCT 58.962 50.000 0.00 0.00 0.00 4.58
1187 3518 4.350368 TGCACTAAAATGACAGACTGGA 57.650 40.909 7.51 0.00 0.00 3.86
1188 3519 5.181811 TCAATGCACTAAAATGACAGACTGG 59.818 40.000 7.51 0.00 0.00 4.00
1450 6620 5.514136 CCAAACTGGGAGTAATCAGTACCAA 60.514 44.000 0.00 0.00 42.67 3.67
1802 7232 7.120579 CAGCAGTAGTCCCTGTAGAATATAGAG 59.879 44.444 0.00 0.00 30.48 2.43
2148 7596 7.605449 TCAATCAAAAACAGGGAATCTCAATC 58.395 34.615 0.00 0.00 0.00 2.67
2184 7632 2.627945 TGCTCACGAAACAAACTCAGT 58.372 42.857 0.00 0.00 0.00 3.41
2323 7771 9.950496 AAATCACAAGACAGATAGTTCACTTAT 57.050 29.630 0.00 0.00 0.00 1.73
2325 7773 7.716998 ACAAATCACAAGACAGATAGTTCACTT 59.283 33.333 0.00 0.00 0.00 3.16
2326 7774 7.220030 ACAAATCACAAGACAGATAGTTCACT 58.780 34.615 0.00 0.00 0.00 3.41
2336 7784 4.974275 CAGCTGAAACAAATCACAAGACAG 59.026 41.667 8.42 0.00 0.00 3.51
2369 7817 7.769044 TGACTTAAAGCATATAAGTTGTCCCTC 59.231 37.037 9.33 0.00 42.18 4.30
2378 7826 8.730680 ACCACAACTTGACTTAAAGCATATAAG 58.269 33.333 0.00 0.00 36.62 1.73
2380 7828 7.663905 ACACCACAACTTGACTTAAAGCATATA 59.336 33.333 0.00 0.00 0.00 0.86
2381 7829 6.490040 ACACCACAACTTGACTTAAAGCATAT 59.510 34.615 0.00 0.00 0.00 1.78
2428 7876 7.298507 CAATGGTTGCTTTTGGAATAATCTG 57.701 36.000 0.00 0.00 31.02 2.90
2444 7892 5.895636 TCAGTAATACAAGGCAATGGTTG 57.104 39.130 0.00 0.00 0.00 3.77
2445 7893 7.480760 AAATCAGTAATACAAGGCAATGGTT 57.519 32.000 0.00 0.00 0.00 3.67
2559 8007 5.008019 CACTGAATTGCTGTACAGACAAACT 59.992 40.000 27.08 18.22 34.35 2.66
2560 8008 5.207768 CACTGAATTGCTGTACAGACAAAC 58.792 41.667 27.08 22.26 34.35 2.93
2561 8009 4.275689 CCACTGAATTGCTGTACAGACAAA 59.724 41.667 27.08 16.30 34.35 2.83
2562 8010 3.814842 CCACTGAATTGCTGTACAGACAA 59.185 43.478 27.08 25.72 34.35 3.18
2563 8011 3.402110 CCACTGAATTGCTGTACAGACA 58.598 45.455 27.08 19.50 34.88 3.41
2564 8012 2.160417 GCCACTGAATTGCTGTACAGAC 59.840 50.000 27.08 17.20 34.88 3.51
2565 8013 2.224499 TGCCACTGAATTGCTGTACAGA 60.224 45.455 27.08 6.91 34.88 3.41
2566 8014 2.153645 TGCCACTGAATTGCTGTACAG 58.846 47.619 18.93 18.93 36.58 2.74
2567 8015 2.268762 TGCCACTGAATTGCTGTACA 57.731 45.000 0.00 0.00 0.00 2.90
2568 8016 3.504863 CATTGCCACTGAATTGCTGTAC 58.495 45.455 0.00 0.00 0.00 2.90
2569 8017 2.094597 GCATTGCCACTGAATTGCTGTA 60.095 45.455 0.00 0.00 0.00 2.74
2570 8018 1.337447 GCATTGCCACTGAATTGCTGT 60.337 47.619 0.00 0.00 0.00 4.40
2571 8019 1.067142 AGCATTGCCACTGAATTGCTG 60.067 47.619 4.70 0.00 0.00 4.41
2572 8020 1.203994 GAGCATTGCCACTGAATTGCT 59.796 47.619 4.70 0.00 0.00 3.91
2573 8021 1.636988 GAGCATTGCCACTGAATTGC 58.363 50.000 4.70 0.00 0.00 3.56
2574 8022 1.546923 TGGAGCATTGCCACTGAATTG 59.453 47.619 4.70 0.00 0.00 2.32
2575 8023 1.927487 TGGAGCATTGCCACTGAATT 58.073 45.000 4.70 0.00 0.00 2.17
2576 8024 2.154567 ATGGAGCATTGCCACTGAAT 57.845 45.000 4.70 0.00 38.44 2.57
2577 8025 2.804986 TATGGAGCATTGCCACTGAA 57.195 45.000 4.70 0.00 38.44 3.02
2578 8026 2.804986 TTATGGAGCATTGCCACTGA 57.195 45.000 4.70 0.00 38.44 3.41
2579 8027 5.284079 GTTATTTATGGAGCATTGCCACTG 58.716 41.667 4.70 0.00 38.44 3.66
2580 8028 4.342092 GGTTATTTATGGAGCATTGCCACT 59.658 41.667 4.70 0.00 38.44 4.00
2581 8029 4.501400 GGGTTATTTATGGAGCATTGCCAC 60.501 45.833 4.70 0.00 38.44 5.01
2582 8030 3.640967 GGGTTATTTATGGAGCATTGCCA 59.359 43.478 4.70 0.00 40.24 4.92
2583 8031 3.897505 AGGGTTATTTATGGAGCATTGCC 59.102 43.478 4.70 0.00 0.00 4.52
2584 8032 5.535753 AAGGGTTATTTATGGAGCATTGC 57.464 39.130 0.00 0.00 0.00 3.56
2585 8033 7.278424 CACAAAAGGGTTATTTATGGAGCATTG 59.722 37.037 0.00 0.00 0.00 2.82
2586 8034 7.038373 ACACAAAAGGGTTATTTATGGAGCATT 60.038 33.333 0.00 0.00 0.00 3.56
2587 8035 6.440328 ACACAAAAGGGTTATTTATGGAGCAT 59.560 34.615 0.00 0.00 0.00 3.79
2588 8036 5.777732 ACACAAAAGGGTTATTTATGGAGCA 59.222 36.000 0.00 0.00 0.00 4.26
2589 8037 6.071616 TGACACAAAAGGGTTATTTATGGAGC 60.072 38.462 0.00 0.00 0.00 4.70
2590 8038 7.461182 TGACACAAAAGGGTTATTTATGGAG 57.539 36.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.