Multiple sequence alignment - TraesCS7D01G525000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G525000 chr7D 100.000 4350 0 0 1 4350 620987294 620982945 0.000000e+00 8034.0
1 TraesCS7D01G525000 chr7D 79.388 752 129 21 1719 2454 622002920 622003661 1.400000e-139 507.0
2 TraesCS7D01G525000 chr7D 81.764 499 83 8 1720 2214 621661251 621661745 1.130000e-110 411.0
3 TraesCS7D01G525000 chr7D 83.154 279 45 2 1249 1526 622002428 622002705 2.010000e-63 254.0
4 TraesCS7D01G525000 chr7D 97.222 72 2 0 2661 2732 620984563 620984492 5.910000e-24 122.0
5 TraesCS7D01G525000 chr7D 97.222 72 2 0 2732 2803 620984634 620984563 5.910000e-24 122.0
6 TraesCS7D01G525000 chr7B 91.151 1503 104 13 1004 2487 719083788 719082296 0.000000e+00 2012.0
7 TraesCS7D01G525000 chr7B 90.847 732 34 10 3643 4350 719081286 719080564 0.000000e+00 950.0
8 TraesCS7D01G525000 chr7B 91.388 627 23 10 2958 3579 719082295 719081695 0.000000e+00 830.0
9 TraesCS7D01G525000 chr7B 79.760 751 129 19 1719 2454 719721262 719722004 1.390000e-144 523.0
10 TraesCS7D01G525000 chr7B 78.062 743 123 27 1728 2460 717749796 717749084 2.400000e-117 433.0
11 TraesCS7D01G525000 chr7B 81.124 498 88 6 1720 2214 718338823 718338329 1.130000e-105 394.0
12 TraesCS7D01G525000 chr7B 82.979 282 46 2 1246 1526 719720805 719721085 2.010000e-63 254.0
13 TraesCS7D01G525000 chr7B 82.014 278 27 14 570 840 719084165 719083904 9.470000e-52 215.0
14 TraesCS7D01G525000 chr7B 84.120 233 17 4 1 224 719084463 719084242 1.590000e-49 207.0
15 TraesCS7D01G525000 chr7A 87.177 1084 111 15 1652 2722 716246874 716247942 0.000000e+00 1206.0
16 TraesCS7D01G525000 chr7A 85.727 1121 90 30 543 1610 716245784 716246887 0.000000e+00 1120.0
17 TraesCS7D01G525000 chr7A 85.261 536 58 15 3045 3572 716248018 716248540 2.300000e-147 532.0
18 TraesCS7D01G525000 chr7A 78.832 822 149 21 1719 2526 717745159 717745969 8.280000e-147 531.0
19 TraesCS7D01G525000 chr7A 79.743 701 113 23 1719 2402 716403741 716404429 8.460000e-132 481.0
20 TraesCS7D01G525000 chr7A 83.929 280 43 2 1248 1526 717744704 717744982 2.580000e-67 267.0
21 TraesCS7D01G525000 chr7A 89.362 141 15 0 1 141 716227940 716228080 1.240000e-40 178.0
22 TraesCS7D01G525000 chr7A 82.126 207 18 9 13 219 716245585 716245772 4.500000e-35 159.0
23 TraesCS7D01G525000 chr7A 80.000 180 28 5 1720 1892 717833366 717833544 4.570000e-25 126.0
24 TraesCS7D01G525000 chrUn 77.668 1827 288 66 990 2739 93058445 93056662 0.000000e+00 1003.0
25 TraesCS7D01G525000 chrUn 77.584 1838 294 67 972 2732 310844023 310845819 0.000000e+00 1003.0
26 TraesCS7D01G525000 chr3B 89.037 301 23 5 233 533 16059472 16059182 8.890000e-97 364.0
27 TraesCS7D01G525000 chr3B 88.000 300 26 7 233 532 113928639 113928350 3.220000e-91 346.0
28 TraesCS7D01G525000 chr4A 88.889 297 25 7 233 529 636560787 636560499 4.140000e-95 359.0
29 TraesCS7D01G525000 chr4A 75.359 487 92 22 1719 2202 531326516 531326977 4.410000e-50 209.0
30 TraesCS7D01G525000 chr6D 88.889 297 23 7 233 529 361286945 361286659 1.490000e-94 357.0
31 TraesCS7D01G525000 chr5B 88.963 299 19 10 233 529 611739114 611738828 1.490000e-94 357.0
32 TraesCS7D01G525000 chr4B 88.889 297 23 6 233 529 667853059 667852773 1.490000e-94 357.0
33 TraesCS7D01G525000 chr4B 75.153 491 94 24 1719 2205 95108840 95108374 5.700000e-49 206.0
34 TraesCS7D01G525000 chr5A 88.411 302 25 6 228 529 546793772 546794063 5.350000e-94 355.0
35 TraesCS7D01G525000 chr4D 88.333 300 25 7 230 529 83549012 83549301 6.920000e-93 351.0
36 TraesCS7D01G525000 chr4D 80.556 216 36 3 1719 1934 64605523 64605314 1.250000e-35 161.0
37 TraesCS7D01G525000 chr2D 88.255 298 24 8 233 529 312524412 312524125 3.220000e-91 346.0
38 TraesCS7D01G525000 chr2B 94.595 37 1 1 4155 4191 394390767 394390802 6.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G525000 chr7D 620982945 620987294 4349 True 2759.333333 8034 98.14800 1 4350 3 chr7D.!!$R1 4349
1 TraesCS7D01G525000 chr7D 622002428 622003661 1233 False 380.500000 507 81.27100 1249 2454 2 chr7D.!!$F2 1205
2 TraesCS7D01G525000 chr7B 719080564 719084463 3899 True 842.800000 2012 87.90400 1 4350 5 chr7B.!!$R3 4349
3 TraesCS7D01G525000 chr7B 717749084 717749796 712 True 433.000000 433 78.06200 1728 2460 1 chr7B.!!$R1 732
4 TraesCS7D01G525000 chr7B 719720805 719722004 1199 False 388.500000 523 81.36950 1246 2454 2 chr7B.!!$F1 1208
5 TraesCS7D01G525000 chr7A 716245585 716248540 2955 False 754.250000 1206 85.07275 13 3572 4 chr7A.!!$F4 3559
6 TraesCS7D01G525000 chr7A 716403741 716404429 688 False 481.000000 481 79.74300 1719 2402 1 chr7A.!!$F2 683
7 TraesCS7D01G525000 chr7A 717744704 717745969 1265 False 399.000000 531 81.38050 1248 2526 2 chr7A.!!$F5 1278
8 TraesCS7D01G525000 chrUn 93056662 93058445 1783 True 1003.000000 1003 77.66800 990 2739 1 chrUn.!!$R1 1749
9 TraesCS7D01G525000 chrUn 310844023 310845819 1796 False 1003.000000 1003 77.58400 972 2732 1 chrUn.!!$F1 1760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 354 0.036388 TAAGCGGGCTCTTGGTGAAG 60.036 55.0 0.00 0.0 0.00 3.02 F
366 376 0.243907 TCAGCTCTAACACGTGCTCC 59.756 55.0 17.22 0.0 31.96 4.70 F
367 377 0.244994 CAGCTCTAACACGTGCTCCT 59.755 55.0 17.22 0.0 31.96 3.69 F
372 382 0.530744 CTAACACGTGCTCCTAGGCA 59.469 55.0 17.22 0.0 40.15 4.75 F
693 747 0.625849 ATCTTCACCACATGGACCCC 59.374 55.0 4.53 0.0 38.94 4.95 F
1284 1386 0.668535 CGGACGATGGCAGAGTGATA 59.331 55.0 2.27 0.0 0.00 2.15 F
1638 1764 0.783850 AAGGCAACCCCCAATGTAGT 59.216 50.0 0.00 0.0 37.17 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1492 0.040067 GTTTCGCTGCAGAACCCAAG 60.040 55.000 20.43 0.0 0.00 3.61 R
1712 1871 2.094762 AGCGTGTGTCCCAACTAATC 57.905 50.000 0.00 0.0 0.00 1.75 R
2329 2542 2.611292 GAGGCTTTCATGATCCAACGAG 59.389 50.000 0.00 0.0 0.00 4.18 R
2557 2775 6.042437 AGTGATCAAGCTTCCCAAAAGAAAAT 59.958 34.615 0.00 0.0 0.00 1.82 R
2721 2939 2.652941 GCATTTTCGGATGCCAGAAA 57.347 45.000 7.74 0.0 45.16 2.52 R
3290 3525 0.453390 GTAGTTGTAGACGGACGGGG 59.547 60.000 0.00 0.0 0.00 5.73 R
3765 4346 0.834687 TGGTAGAAACGTGAGGCCCT 60.835 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.942976 TGCTAGTTGCCACTTAAGTATTACT 58.057 36.000 8.04 11.40 42.00 2.24
81 82 8.421784 CACTTAAGTATTACTCCTATGGCTTGA 58.578 37.037 8.04 0.00 0.00 3.02
82 83 8.643324 ACTTAAGTATTACTCCTATGGCTTGAG 58.357 37.037 6.26 0.00 0.00 3.02
83 84 5.476091 AGTATTACTCCTATGGCTTGAGC 57.524 43.478 0.00 0.00 41.14 4.26
84 85 2.890808 TTACTCCTATGGCTTGAGCG 57.109 50.000 0.00 0.00 43.26 5.03
85 86 1.776662 TACTCCTATGGCTTGAGCGT 58.223 50.000 0.00 0.00 43.26 5.07
86 87 0.176680 ACTCCTATGGCTTGAGCGTG 59.823 55.000 0.00 0.00 43.26 5.34
87 88 0.531532 CTCCTATGGCTTGAGCGTGG 60.532 60.000 0.00 0.00 43.26 4.94
88 89 2.182842 CCTATGGCTTGAGCGTGGC 61.183 63.158 0.00 0.00 43.26 5.01
89 90 2.124736 TATGGCTTGAGCGTGGCC 60.125 61.111 0.00 0.00 45.45 5.36
116 117 4.088496 GCGTGTTTGCTGCTAACTTAATTG 59.912 41.667 23.31 10.63 0.00 2.32
220 230 1.037030 CCATATGCGGCCCACAACTT 61.037 55.000 0.00 0.00 0.00 2.66
226 236 3.047877 GGCCCACAACTTCGGTCG 61.048 66.667 0.00 0.00 0.00 4.79
230 240 0.108329 CCCACAACTTCGGTCGCTAT 60.108 55.000 0.00 0.00 0.00 2.97
231 241 1.278238 CCACAACTTCGGTCGCTATC 58.722 55.000 0.00 0.00 0.00 2.08
233 243 1.920574 CACAACTTCGGTCGCTATCAG 59.079 52.381 0.00 0.00 0.00 2.90
235 245 2.159366 ACAACTTCGGTCGCTATCAGAG 60.159 50.000 0.00 0.00 0.00 3.35
252 262 6.674694 ATCAGAGCAAGTACAATAAAGCTG 57.325 37.500 0.00 0.00 31.61 4.24
253 263 5.793817 TCAGAGCAAGTACAATAAAGCTGA 58.206 37.500 0.00 0.00 31.61 4.26
254 264 5.871524 TCAGAGCAAGTACAATAAAGCTGAG 59.128 40.000 0.00 0.00 31.61 3.35
255 265 5.641209 CAGAGCAAGTACAATAAAGCTGAGT 59.359 40.000 0.00 0.00 31.61 3.41
256 266 5.872070 AGAGCAAGTACAATAAAGCTGAGTC 59.128 40.000 0.00 0.00 31.61 3.36
257 267 5.551233 AGCAAGTACAATAAAGCTGAGTCA 58.449 37.500 0.00 0.00 0.00 3.41
258 268 5.641209 AGCAAGTACAATAAAGCTGAGTCAG 59.359 40.000 16.21 16.21 34.12 3.51
271 281 4.662468 CTGAGTCAGCTGGCTATAAGAA 57.338 45.455 23.29 2.05 0.00 2.52
272 282 5.016051 CTGAGTCAGCTGGCTATAAGAAA 57.984 43.478 23.29 0.23 0.00 2.52
273 283 5.609423 CTGAGTCAGCTGGCTATAAGAAAT 58.391 41.667 23.29 0.00 0.00 2.17
274 284 6.731292 TGAGTCAGCTGGCTATAAGAAATA 57.269 37.500 23.29 0.00 0.00 1.40
275 285 7.124573 TGAGTCAGCTGGCTATAAGAAATAA 57.875 36.000 23.29 0.00 0.00 1.40
276 286 7.564793 TGAGTCAGCTGGCTATAAGAAATAAA 58.435 34.615 23.29 0.00 0.00 1.40
277 287 7.495934 TGAGTCAGCTGGCTATAAGAAATAAAC 59.504 37.037 23.29 4.23 0.00 2.01
278 288 7.569240 AGTCAGCTGGCTATAAGAAATAAACT 58.431 34.615 21.80 3.19 0.00 2.66
279 289 8.705594 AGTCAGCTGGCTATAAGAAATAAACTA 58.294 33.333 21.80 0.00 0.00 2.24
280 290 8.983724 GTCAGCTGGCTATAAGAAATAAACTAG 58.016 37.037 12.09 0.00 0.00 2.57
281 291 8.705594 TCAGCTGGCTATAAGAAATAAACTAGT 58.294 33.333 15.13 0.00 0.00 2.57
282 292 9.982651 CAGCTGGCTATAAGAAATAAACTAGTA 57.017 33.333 5.57 0.00 0.00 1.82
312 322 9.675464 TCTTACTTACTTGGAGAAAAGAAAACA 57.325 29.630 0.00 0.00 0.00 2.83
313 323 9.937175 CTTACTTACTTGGAGAAAAGAAAACAG 57.063 33.333 0.00 0.00 0.00 3.16
314 324 9.675464 TTACTTACTTGGAGAAAAGAAAACAGA 57.325 29.630 0.00 0.00 0.00 3.41
315 325 8.575649 ACTTACTTGGAGAAAAGAAAACAGAA 57.424 30.769 0.00 0.00 0.00 3.02
316 326 8.678199 ACTTACTTGGAGAAAAGAAAACAGAAG 58.322 33.333 0.00 0.00 0.00 2.85
317 327 8.801882 TTACTTGGAGAAAAGAAAACAGAAGA 57.198 30.769 0.00 0.00 0.00 2.87
318 328 7.326968 ACTTGGAGAAAAGAAAACAGAAGAG 57.673 36.000 0.00 0.00 0.00 2.85
319 329 7.112779 ACTTGGAGAAAAGAAAACAGAAGAGA 58.887 34.615 0.00 0.00 0.00 3.10
320 330 7.281999 ACTTGGAGAAAAGAAAACAGAAGAGAG 59.718 37.037 0.00 0.00 0.00 3.20
321 331 6.889198 TGGAGAAAAGAAAACAGAAGAGAGA 58.111 36.000 0.00 0.00 0.00 3.10
322 332 7.338710 TGGAGAAAAGAAAACAGAAGAGAGAA 58.661 34.615 0.00 0.00 0.00 2.87
323 333 7.497249 TGGAGAAAAGAAAACAGAAGAGAGAAG 59.503 37.037 0.00 0.00 0.00 2.85
324 334 7.713073 GGAGAAAAGAAAACAGAAGAGAGAAGA 59.287 37.037 0.00 0.00 0.00 2.87
325 335 9.271828 GAGAAAAGAAAACAGAAGAGAGAAGAT 57.728 33.333 0.00 0.00 0.00 2.40
329 339 8.546597 AAGAAAACAGAAGAGAGAAGATAAGC 57.453 34.615 0.00 0.00 0.00 3.09
330 340 6.811170 AGAAAACAGAAGAGAGAAGATAAGCG 59.189 38.462 0.00 0.00 0.00 4.68
331 341 4.647424 ACAGAAGAGAGAAGATAAGCGG 57.353 45.455 0.00 0.00 0.00 5.52
332 342 3.383185 ACAGAAGAGAGAAGATAAGCGGG 59.617 47.826 0.00 0.00 0.00 6.13
333 343 2.364002 AGAAGAGAGAAGATAAGCGGGC 59.636 50.000 0.00 0.00 0.00 6.13
334 344 2.080654 AGAGAGAAGATAAGCGGGCT 57.919 50.000 0.00 0.00 0.00 5.19
335 345 1.960689 AGAGAGAAGATAAGCGGGCTC 59.039 52.381 0.00 0.00 0.00 4.70
336 346 1.960689 GAGAGAAGATAAGCGGGCTCT 59.039 52.381 0.00 0.00 35.59 4.09
337 347 2.364002 GAGAGAAGATAAGCGGGCTCTT 59.636 50.000 0.00 0.00 33.26 2.85
338 348 2.102252 AGAGAAGATAAGCGGGCTCTTG 59.898 50.000 0.00 0.00 29.02 3.02
339 349 1.139853 AGAAGATAAGCGGGCTCTTGG 59.860 52.381 0.00 0.00 29.64 3.61
340 350 0.912486 AAGATAAGCGGGCTCTTGGT 59.088 50.000 0.00 0.00 0.00 3.67
341 351 0.179000 AGATAAGCGGGCTCTTGGTG 59.821 55.000 0.00 0.00 0.00 4.17
342 352 0.178068 GATAAGCGGGCTCTTGGTGA 59.822 55.000 0.00 0.00 0.00 4.02
343 353 0.618458 ATAAGCGGGCTCTTGGTGAA 59.382 50.000 0.00 0.00 0.00 3.18
344 354 0.036388 TAAGCGGGCTCTTGGTGAAG 60.036 55.000 0.00 0.00 0.00 3.02
345 355 1.768684 AAGCGGGCTCTTGGTGAAGA 61.769 55.000 0.00 0.00 36.72 2.87
363 373 1.341606 GAGTCAGCTCTAACACGTGC 58.658 55.000 17.22 0.00 38.66 5.34
364 374 0.962489 AGTCAGCTCTAACACGTGCT 59.038 50.000 17.22 5.96 34.37 4.40
365 375 1.068194 AGTCAGCTCTAACACGTGCTC 60.068 52.381 17.22 0.00 31.96 4.26
366 376 0.243907 TCAGCTCTAACACGTGCTCC 59.756 55.000 17.22 0.00 31.96 4.70
367 377 0.244994 CAGCTCTAACACGTGCTCCT 59.755 55.000 17.22 0.00 31.96 3.69
368 378 1.472878 CAGCTCTAACACGTGCTCCTA 59.527 52.381 17.22 1.26 31.96 2.94
369 379 1.746220 AGCTCTAACACGTGCTCCTAG 59.254 52.381 17.22 11.33 0.00 3.02
370 380 1.202313 GCTCTAACACGTGCTCCTAGG 60.202 57.143 17.22 0.82 0.00 3.02
371 381 0.815734 TCTAACACGTGCTCCTAGGC 59.184 55.000 17.22 0.00 0.00 3.93
372 382 0.530744 CTAACACGTGCTCCTAGGCA 59.469 55.000 17.22 0.00 40.15 4.75
379 389 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
380 390 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
381 391 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
382 392 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
383 393 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
384 394 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
385 395 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
386 396 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
387 397 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
388 398 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
389 399 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
390 400 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
391 401 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
392 402 4.518970 GGCACTTTGTGAGAATGAAAGGTA 59.481 41.667 1.52 0.00 35.23 3.08
393 403 5.183904 GGCACTTTGTGAGAATGAAAGGTAT 59.816 40.000 1.52 0.00 35.23 2.73
394 404 6.088824 GCACTTTGTGAGAATGAAAGGTATG 58.911 40.000 1.52 0.00 35.23 2.39
395 405 6.088824 CACTTTGTGAGAATGAAAGGTATGC 58.911 40.000 0.00 0.00 35.23 3.14
396 406 5.183904 ACTTTGTGAGAATGAAAGGTATGCC 59.816 40.000 0.00 0.00 0.00 4.40
397 407 4.299586 TGTGAGAATGAAAGGTATGCCA 57.700 40.909 1.54 0.00 37.19 4.92
398 408 4.858850 TGTGAGAATGAAAGGTATGCCAT 58.141 39.130 1.54 0.00 37.19 4.40
399 409 6.000246 TGTGAGAATGAAAGGTATGCCATA 58.000 37.500 1.54 0.00 37.19 2.74
400 410 6.604171 TGTGAGAATGAAAGGTATGCCATAT 58.396 36.000 1.54 0.00 37.19 1.78
401 411 7.744733 TGTGAGAATGAAAGGTATGCCATATA 58.255 34.615 1.54 0.00 37.19 0.86
402 412 8.217111 TGTGAGAATGAAAGGTATGCCATATAA 58.783 33.333 1.54 0.00 37.19 0.98
403 413 9.236006 GTGAGAATGAAAGGTATGCCATATAAT 57.764 33.333 1.54 0.00 37.19 1.28
467 477 8.967552 ATTGACTATAAAATCGACGGACTATC 57.032 34.615 0.00 0.00 0.00 2.08
468 478 7.500720 TGACTATAAAATCGACGGACTATCA 57.499 36.000 0.00 0.00 0.00 2.15
469 479 7.933396 TGACTATAAAATCGACGGACTATCAA 58.067 34.615 0.00 0.00 0.00 2.57
470 480 8.573885 TGACTATAAAATCGACGGACTATCAAT 58.426 33.333 0.00 0.00 0.00 2.57
471 481 8.744008 ACTATAAAATCGACGGACTATCAATG 57.256 34.615 0.00 0.00 0.00 2.82
472 482 8.573885 ACTATAAAATCGACGGACTATCAATGA 58.426 33.333 0.00 0.00 0.00 2.57
473 483 5.968387 AAAATCGACGGACTATCAATGAC 57.032 39.130 0.00 0.00 0.00 3.06
474 484 4.649088 AATCGACGGACTATCAATGACA 57.351 40.909 0.00 0.00 0.00 3.58
475 485 4.649088 ATCGACGGACTATCAATGACAA 57.351 40.909 0.00 0.00 0.00 3.18
476 486 4.649088 TCGACGGACTATCAATGACAAT 57.351 40.909 0.00 0.00 0.00 2.71
477 487 4.359706 TCGACGGACTATCAATGACAATG 58.640 43.478 0.00 0.00 0.00 2.82
478 488 4.097286 TCGACGGACTATCAATGACAATGA 59.903 41.667 0.00 0.00 0.00 2.57
479 489 4.207224 CGACGGACTATCAATGACAATGAC 59.793 45.833 0.00 0.00 0.00 3.06
480 490 5.084818 ACGGACTATCAATGACAATGACA 57.915 39.130 0.00 0.00 0.00 3.58
481 491 5.674525 ACGGACTATCAATGACAATGACAT 58.325 37.500 0.00 0.00 0.00 3.06
482 492 5.525012 ACGGACTATCAATGACAATGACATG 59.475 40.000 0.00 0.00 0.00 3.21
483 493 5.754890 CGGACTATCAATGACAATGACATGA 59.245 40.000 0.00 0.60 0.00 3.07
484 494 6.292542 CGGACTATCAATGACAATGACATGAC 60.293 42.308 0.00 0.00 0.00 3.06
485 495 6.539826 GGACTATCAATGACAATGACATGACA 59.460 38.462 0.00 0.00 0.00 3.58
486 496 7.066163 GGACTATCAATGACAATGACATGACAA 59.934 37.037 0.00 0.00 0.00 3.18
487 497 8.515695 ACTATCAATGACAATGACATGACAAT 57.484 30.769 0.00 0.00 0.00 2.71
488 498 9.617523 ACTATCAATGACAATGACATGACAATA 57.382 29.630 0.00 0.00 0.00 1.90
490 500 6.788243 TCAATGACAATGACATGACAATAGC 58.212 36.000 0.00 0.00 0.00 2.97
491 501 6.600427 TCAATGACAATGACATGACAATAGCT 59.400 34.615 0.00 0.00 0.00 3.32
492 502 7.121611 TCAATGACAATGACATGACAATAGCTT 59.878 33.333 0.00 0.00 0.00 3.74
493 503 8.400186 CAATGACAATGACATGACAATAGCTTA 58.600 33.333 0.00 0.00 0.00 3.09
494 504 8.687292 ATGACAATGACATGACAATAGCTTAT 57.313 30.769 0.00 0.00 0.00 1.73
495 505 9.783081 ATGACAATGACATGACAATAGCTTATA 57.217 29.630 0.00 0.00 0.00 0.98
496 506 9.264719 TGACAATGACATGACAATAGCTTATAG 57.735 33.333 0.00 0.00 0.00 1.31
497 507 8.092521 ACAATGACATGACAATAGCTTATAGC 57.907 34.615 0.00 0.00 42.84 2.97
498 508 7.173907 ACAATGACATGACAATAGCTTATAGCC 59.826 37.037 0.00 0.00 43.77 3.93
499 509 6.173427 TGACATGACAATAGCTTATAGCCA 57.827 37.500 0.00 0.00 43.77 4.75
500 510 6.772605 TGACATGACAATAGCTTATAGCCAT 58.227 36.000 0.00 0.00 43.77 4.40
501 511 6.875726 TGACATGACAATAGCTTATAGCCATC 59.124 38.462 0.00 0.00 43.77 3.51
502 512 6.772605 ACATGACAATAGCTTATAGCCATCA 58.227 36.000 0.00 0.00 43.77 3.07
503 513 6.877855 ACATGACAATAGCTTATAGCCATCAG 59.122 38.462 0.00 0.00 43.77 2.90
504 514 6.425210 TGACAATAGCTTATAGCCATCAGT 57.575 37.500 0.00 0.00 43.77 3.41
505 515 6.830912 TGACAATAGCTTATAGCCATCAGTT 58.169 36.000 0.00 0.00 43.77 3.16
506 516 7.282585 TGACAATAGCTTATAGCCATCAGTTT 58.717 34.615 0.00 0.00 43.77 2.66
507 517 7.227314 TGACAATAGCTTATAGCCATCAGTTTG 59.773 37.037 0.00 0.00 43.77 2.93
508 518 6.016777 ACAATAGCTTATAGCCATCAGTTTGC 60.017 38.462 0.00 0.00 43.77 3.68
509 519 3.217626 AGCTTATAGCCATCAGTTTGCC 58.782 45.455 0.00 0.00 43.77 4.52
510 520 2.951642 GCTTATAGCCATCAGTTTGCCA 59.048 45.455 0.00 0.00 34.48 4.92
511 521 3.571401 GCTTATAGCCATCAGTTTGCCAT 59.429 43.478 0.00 0.00 34.48 4.40
512 522 4.761739 GCTTATAGCCATCAGTTTGCCATA 59.238 41.667 0.00 0.00 34.48 2.74
513 523 5.335191 GCTTATAGCCATCAGTTTGCCATAC 60.335 44.000 0.00 0.00 34.48 2.39
514 524 2.814805 AGCCATCAGTTTGCCATACT 57.185 45.000 0.00 0.00 0.00 2.12
515 525 3.931907 AGCCATCAGTTTGCCATACTA 57.068 42.857 0.00 0.00 0.00 1.82
516 526 4.443978 AGCCATCAGTTTGCCATACTAT 57.556 40.909 0.00 0.00 0.00 2.12
517 527 4.796606 AGCCATCAGTTTGCCATACTATT 58.203 39.130 0.00 0.00 0.00 1.73
518 528 5.940617 AGCCATCAGTTTGCCATACTATTA 58.059 37.500 0.00 0.00 0.00 0.98
519 529 6.364701 AGCCATCAGTTTGCCATACTATTAA 58.635 36.000 0.00 0.00 0.00 1.40
520 530 6.263168 AGCCATCAGTTTGCCATACTATTAAC 59.737 38.462 0.00 0.00 0.00 2.01
521 531 6.515035 GCCATCAGTTTGCCATACTATTAACC 60.515 42.308 0.00 0.00 0.00 2.85
522 532 6.545666 CCATCAGTTTGCCATACTATTAACCA 59.454 38.462 0.00 0.00 0.00 3.67
523 533 7.231317 CCATCAGTTTGCCATACTATTAACCAT 59.769 37.037 0.00 0.00 0.00 3.55
524 534 7.566760 TCAGTTTGCCATACTATTAACCATG 57.433 36.000 0.00 0.00 0.00 3.66
525 535 6.039270 TCAGTTTGCCATACTATTAACCATGC 59.961 38.462 0.00 0.00 0.00 4.06
526 536 6.039717 CAGTTTGCCATACTATTAACCATGCT 59.960 38.462 0.00 0.00 0.00 3.79
527 537 6.263168 AGTTTGCCATACTATTAACCATGCTC 59.737 38.462 0.00 0.00 0.00 4.26
528 538 5.567037 TGCCATACTATTAACCATGCTCT 57.433 39.130 0.00 0.00 0.00 4.09
529 539 5.551233 TGCCATACTATTAACCATGCTCTC 58.449 41.667 0.00 0.00 0.00 3.20
530 540 5.071653 TGCCATACTATTAACCATGCTCTCA 59.928 40.000 0.00 0.00 0.00 3.27
531 541 5.641209 GCCATACTATTAACCATGCTCTCAG 59.359 44.000 0.00 0.00 0.00 3.35
532 542 6.742644 GCCATACTATTAACCATGCTCTCAGT 60.743 42.308 0.00 0.00 0.00 3.41
533 543 7.220030 CCATACTATTAACCATGCTCTCAGTT 58.780 38.462 0.00 0.00 0.00 3.16
534 544 7.716998 CCATACTATTAACCATGCTCTCAGTTT 59.283 37.037 0.00 0.00 0.00 2.66
535 545 8.768955 CATACTATTAACCATGCTCTCAGTTTC 58.231 37.037 0.00 0.00 0.00 2.78
536 546 6.711277 ACTATTAACCATGCTCTCAGTTTCA 58.289 36.000 0.00 0.00 0.00 2.69
537 547 7.168219 ACTATTAACCATGCTCTCAGTTTCAA 58.832 34.615 0.00 0.00 0.00 2.69
538 548 7.831193 ACTATTAACCATGCTCTCAGTTTCAAT 59.169 33.333 0.00 0.00 0.00 2.57
541 551 5.886960 ACCATGCTCTCAGTTTCAATAAC 57.113 39.130 0.00 0.00 0.00 1.89
547 557 4.156739 GCTCTCAGTTTCAATAACCCAAGG 59.843 45.833 0.00 0.00 0.00 3.61
553 563 2.530460 TCAATAACCCAAGGCTGCAT 57.470 45.000 0.50 0.00 0.00 3.96
558 568 2.757099 CCCAAGGCTGCATCCACC 60.757 66.667 9.69 0.00 0.00 4.61
572 614 2.421314 CACCAGTGGACACGAGCA 59.579 61.111 18.40 0.00 36.20 4.26
635 677 4.586841 TGGAATTAAATTATGGCGAAGGGG 59.413 41.667 0.00 0.00 0.00 4.79
636 678 4.830600 GGAATTAAATTATGGCGAAGGGGA 59.169 41.667 0.00 0.00 0.00 4.81
693 747 0.625849 ATCTTCACCACATGGACCCC 59.374 55.000 4.53 0.00 38.94 4.95
750 805 3.655777 TCAACATACCACCCTTCTTCCTT 59.344 43.478 0.00 0.00 0.00 3.36
780 839 4.940463 TGCTCCGTATAAATCTACACCAC 58.060 43.478 0.00 0.00 0.00 4.16
781 840 4.647853 TGCTCCGTATAAATCTACACCACT 59.352 41.667 0.00 0.00 0.00 4.00
783 842 5.009811 GCTCCGTATAAATCTACACCACTCT 59.990 44.000 0.00 0.00 0.00 3.24
786 845 4.982916 CGTATAAATCTACACCACTCTGCC 59.017 45.833 0.00 0.00 0.00 4.85
787 846 2.789409 AAATCTACACCACTCTGCCC 57.211 50.000 0.00 0.00 0.00 5.36
806 866 3.309296 CCCCTAGCTAAGATTCACCTCA 58.691 50.000 0.00 0.00 0.00 3.86
811 871 4.479786 AGCTAAGATTCACCTCACTTCC 57.520 45.455 0.00 0.00 0.00 3.46
820 880 2.060980 CCTCACTTCCCTCTCCCCG 61.061 68.421 0.00 0.00 0.00 5.73
821 881 2.038975 TCACTTCCCTCTCCCCGG 59.961 66.667 0.00 0.00 0.00 5.73
822 882 3.787001 CACTTCCCTCTCCCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
823 883 4.332543 ACTTCCCTCTCCCCGGCA 62.333 66.667 0.00 0.00 0.00 5.69
832 892 1.819632 CTCCCCGGCAAAGGATTCG 60.820 63.158 0.00 0.00 0.00 3.34
837 897 1.425428 CGGCAAAGGATTCGTCTGC 59.575 57.895 0.00 0.00 0.00 4.26
877 950 3.710722 CCCCTCAAGGTCAGCGCT 61.711 66.667 2.64 2.64 0.00 5.92
884 957 3.181506 CCTCAAGGTCAGCGCTTAATTTC 60.182 47.826 7.50 0.00 0.00 2.17
946 1028 5.104941 TGAAGTTTCACCTCTTCAGTCTTGA 60.105 40.000 3.91 0.00 43.02 3.02
952 1034 4.765339 TCACCTCTTCAGTCTTGAATACGA 59.235 41.667 0.00 0.00 42.19 3.43
955 1037 6.591834 CACCTCTTCAGTCTTGAATACGAAAT 59.408 38.462 0.00 0.00 42.19 2.17
958 1040 7.009999 CCTCTTCAGTCTTGAATACGAAATCAG 59.990 40.741 0.00 0.00 42.19 2.90
960 1042 8.088365 TCTTCAGTCTTGAATACGAAATCAGAA 58.912 33.333 0.00 0.00 42.19 3.02
961 1043 7.818493 TCAGTCTTGAATACGAAATCAGAAG 57.182 36.000 0.00 0.00 0.00 2.85
962 1044 7.378966 TCAGTCTTGAATACGAAATCAGAAGT 58.621 34.615 0.00 0.00 0.00 3.01
963 1045 8.520351 TCAGTCTTGAATACGAAATCAGAAGTA 58.480 33.333 0.00 0.00 0.00 2.24
964 1046 8.802856 CAGTCTTGAATACGAAATCAGAAGTAG 58.197 37.037 0.00 0.00 0.00 2.57
965 1047 8.524487 AGTCTTGAATACGAAATCAGAAGTAGT 58.476 33.333 0.00 0.00 0.00 2.73
966 1048 9.784680 GTCTTGAATACGAAATCAGAAGTAGTA 57.215 33.333 0.00 0.00 0.00 1.82
968 1050 9.239002 CTTGAATACGAAATCAGAAGTAGTAGG 57.761 37.037 0.00 0.00 0.00 3.18
969 1051 7.713750 TGAATACGAAATCAGAAGTAGTAGGG 58.286 38.462 0.00 0.00 0.00 3.53
970 1052 7.341256 TGAATACGAAATCAGAAGTAGTAGGGT 59.659 37.037 0.00 0.00 0.00 4.34
1179 1261 1.338200 GGCACACTCTACAAGGTCTGG 60.338 57.143 0.00 0.00 0.00 3.86
1190 1278 2.266279 CAAGGTCTGGTTTCTCCCCTA 58.734 52.381 0.00 0.00 34.77 3.53
1269 1371 2.438434 CAGGGGATTGTGCCGGAC 60.438 66.667 5.05 0.46 0.00 4.79
1284 1386 0.668535 CGGACGATGGCAGAGTGATA 59.331 55.000 2.27 0.00 0.00 2.15
1390 1492 3.742640 GCATGAGAACATAGTGGAGGTCC 60.743 52.174 0.00 0.00 35.09 4.46
1458 1560 3.972638 AGAGATACATCCAGGCAGACATT 59.027 43.478 0.00 0.00 0.00 2.71
1561 1678 6.183360 TGGATTTCTATCTCAGTCCTTAACGG 60.183 42.308 0.00 0.00 0.00 4.44
1564 1683 7.707624 TTTCTATCTCAGTCCTTAACGGTTA 57.292 36.000 0.00 0.00 0.00 2.85
1567 1686 5.934402 ATCTCAGTCCTTAACGGTTACAT 57.066 39.130 0.00 0.00 0.00 2.29
1568 1687 5.733620 TCTCAGTCCTTAACGGTTACATT 57.266 39.130 0.00 0.00 0.00 2.71
1569 1688 6.105397 TCTCAGTCCTTAACGGTTACATTT 57.895 37.500 0.00 0.00 0.00 2.32
1570 1689 6.161381 TCTCAGTCCTTAACGGTTACATTTC 58.839 40.000 0.00 0.00 0.00 2.17
1586 1709 7.116805 GGTTACATTTCTTTCAAATTGGAGCTG 59.883 37.037 0.00 0.00 0.00 4.24
1587 1710 6.409524 ACATTTCTTTCAAATTGGAGCTGA 57.590 33.333 0.00 0.00 0.00 4.26
1588 1711 6.819284 ACATTTCTTTCAAATTGGAGCTGAA 58.181 32.000 0.00 0.00 0.00 3.02
1627 1753 5.161358 GCTGTTTATAGTTTCAAGGCAACC 58.839 41.667 0.00 0.00 37.17 3.77
1638 1764 0.783850 AAGGCAACCCCCAATGTAGT 59.216 50.000 0.00 0.00 37.17 2.73
1645 1771 3.434940 ACCCCCAATGTAGTTTCTCAC 57.565 47.619 0.00 0.00 0.00 3.51
1654 1780 6.968904 CCAATGTAGTTTCTCACAATGTATGC 59.031 38.462 0.00 0.00 0.00 3.14
1712 1871 4.757149 CCCAAAGAGTCCACTAAACAAGAG 59.243 45.833 0.00 0.00 0.00 2.85
1949 2109 8.768019 TCATAGTAAGCTCATCATGAAATTTCG 58.232 33.333 13.34 0.46 0.00 3.46
1992 2155 6.055588 AGTTACATTGTATATGCCTTTCGCT 58.944 36.000 0.00 0.00 38.78 4.93
2329 2542 7.054124 TGGAGAACATAACATCCAAGTATTCC 58.946 38.462 0.00 0.00 38.86 3.01
2573 2791 6.866010 ATGTTCAATTTTCTTTTGGGAAGC 57.134 33.333 0.00 0.00 0.00 3.86
2585 2803 3.795688 TTGGGAAGCTTGATCACTTCT 57.204 42.857 19.77 5.63 41.64 2.85
2590 2808 5.221303 TGGGAAGCTTGATCACTTCTTTTTG 60.221 40.000 19.77 0.00 41.64 2.44
2609 2827 8.519526 TCTTTTTGTATGGTAACTAAATGCTGG 58.480 33.333 0.00 0.00 37.61 4.85
2615 2833 8.760735 TGTATGGTAACTAAATGCTGGTAACTA 58.239 33.333 0.00 0.00 35.02 2.24
2636 2854 6.441222 ACTACCACTTTCCTCATAGATGGTA 58.559 40.000 0.00 0.00 39.61 3.25
2647 2865 5.337089 CCTCATAGATGGTACCTATGCACAG 60.337 48.000 14.36 6.65 41.82 3.66
2685 2903 7.587629 CCGAAATTGCACTCATATTCATGTAT 58.412 34.615 0.00 0.00 33.57 2.29
2691 2909 7.605410 TGCACTCATATTCATGTATATGCAG 57.395 36.000 21.40 19.94 38.04 4.41
2693 2911 7.118680 TGCACTCATATTCATGTATATGCAGTG 59.881 37.037 30.13 30.13 41.72 3.66
2703 2921 9.476202 TTCATGTATATGCAGTGTGTTAGATAC 57.524 33.333 0.00 0.00 34.21 2.24
2704 2922 8.637986 TCATGTATATGCAGTGTGTTAGATACA 58.362 33.333 0.00 0.00 34.16 2.29
2705 2923 9.428097 CATGTATATGCAGTGTGTTAGATACAT 57.572 33.333 0.00 10.48 38.93 2.29
2707 2925 9.476202 TGTATATGCAGTGTGTTAGATACATTC 57.524 33.333 0.00 0.00 39.39 2.67
2708 2926 9.476202 GTATATGCAGTGTGTTAGATACATTCA 57.524 33.333 0.00 0.00 39.39 2.57
2712 2930 8.369218 TGCAGTGTGTTAGATACATTCATATG 57.631 34.615 0.00 0.00 39.39 1.78
2713 2931 7.986889 TGCAGTGTGTTAGATACATTCATATGT 59.013 33.333 1.90 0.00 46.49 2.29
2714 2932 8.830580 GCAGTGTGTTAGATACATTCATATGTT 58.169 33.333 1.90 0.00 42.29 2.71
2728 2946 9.369904 ACATTCATATGTTTTACATTTTCTGGC 57.630 29.630 1.90 0.00 42.29 4.85
2729 2947 9.368674 CATTCATATGTTTTACATTTTCTGGCA 57.631 29.630 1.90 0.00 39.88 4.92
2731 2949 9.585099 TTCATATGTTTTACATTTTCTGGCATC 57.415 29.630 1.90 0.00 39.88 3.91
2732 2950 8.196771 TCATATGTTTTACATTTTCTGGCATCC 58.803 33.333 1.90 0.00 39.88 3.51
2733 2951 4.804108 TGTTTTACATTTTCTGGCATCCG 58.196 39.130 0.00 0.00 0.00 4.18
2734 2952 4.520874 TGTTTTACATTTTCTGGCATCCGA 59.479 37.500 0.00 0.00 0.00 4.55
2735 2953 5.010112 TGTTTTACATTTTCTGGCATCCGAA 59.990 36.000 0.00 0.00 0.00 4.30
2736 2954 5.713792 TTTACATTTTCTGGCATCCGAAA 57.286 34.783 0.00 0.00 0.00 3.46
2737 2955 5.713792 TTACATTTTCTGGCATCCGAAAA 57.286 34.783 13.39 13.39 38.86 2.29
2738 2956 4.806640 ACATTTTCTGGCATCCGAAAAT 57.193 36.364 15.99 15.99 41.89 1.82
2740 2958 3.307782 CATTTTCTGGCATCCGAAAATGC 59.692 43.478 26.58 12.87 45.17 3.56
2751 2969 6.063640 CATCCGAAAATGCACTCATATTCA 57.936 37.500 0.00 0.00 31.46 2.57
2752 2970 6.675026 CATCCGAAAATGCACTCATATTCAT 58.325 36.000 0.00 0.00 31.46 2.57
2753 2971 6.063640 TCCGAAAATGCACTCATATTCATG 57.936 37.500 0.00 0.00 31.46 3.07
2754 2972 5.589855 TCCGAAAATGCACTCATATTCATGT 59.410 36.000 0.00 0.00 33.57 3.21
2755 2973 6.765512 TCCGAAAATGCACTCATATTCATGTA 59.234 34.615 0.00 0.00 33.57 2.29
2756 2974 7.445096 TCCGAAAATGCACTCATATTCATGTAT 59.555 33.333 0.00 0.00 33.57 2.29
2757 2975 8.720562 CCGAAAATGCACTCATATTCATGTATA 58.279 33.333 0.00 0.00 33.57 1.47
2760 2978 9.850628 AAAATGCACTCATATTCATGTATATGC 57.149 29.630 21.40 14.71 38.04 3.14
2761 2979 8.570068 AATGCACTCATATTCATGTATATGCA 57.430 30.769 21.40 18.61 39.02 3.96
2762 2980 7.605410 TGCACTCATATTCATGTATATGCAG 57.395 36.000 21.40 19.94 38.04 4.41
2805 3023 7.656707 ATGTTTTACATTTTCTGGCATCAAC 57.343 32.000 0.00 0.00 34.67 3.18
2808 3026 8.363390 TGTTTTACATTTTCTGGCATCAACATA 58.637 29.630 0.00 0.00 0.00 2.29
2810 3028 9.941325 TTTTACATTTTCTGGCATCAACATATT 57.059 25.926 0.00 0.00 0.00 1.28
2811 3029 9.585099 TTTACATTTTCTGGCATCAACATATTC 57.415 29.630 0.00 0.00 0.00 1.75
2812 3030 6.267817 ACATTTTCTGGCATCAACATATTCG 58.732 36.000 0.00 0.00 0.00 3.34
2813 3031 6.095300 ACATTTTCTGGCATCAACATATTCGA 59.905 34.615 0.00 0.00 0.00 3.71
2814 3032 6.698008 TTTTCTGGCATCAACATATTCGAT 57.302 33.333 0.00 0.00 0.00 3.59
2815 3033 6.698008 TTTCTGGCATCAACATATTCGATT 57.302 33.333 0.00 0.00 0.00 3.34
2818 3036 7.800155 TCTGGCATCAACATATTCGATTTTA 57.200 32.000 0.00 0.00 0.00 1.52
2819 3037 8.394971 TCTGGCATCAACATATTCGATTTTAT 57.605 30.769 0.00 0.00 0.00 1.40
2821 3039 9.121517 CTGGCATCAACATATTCGATTTTATTC 57.878 33.333 0.00 0.00 0.00 1.75
2864 3082 9.634163 CTGAATACAAAGTAGTACACATACACA 57.366 33.333 2.52 0.00 33.30 3.72
2865 3083 9.414295 TGAATACAAAGTAGTACACATACACAC 57.586 33.333 2.52 0.00 33.30 3.82
2866 3084 9.635520 GAATACAAAGTAGTACACATACACACT 57.364 33.333 2.52 0.00 32.87 3.55
2867 3085 9.991906 AATACAAAGTAGTACACATACACACTT 57.008 29.630 2.52 0.00 39.04 3.16
2868 3086 7.709269 ACAAAGTAGTACACATACACACTTG 57.291 36.000 2.52 0.00 38.16 3.16
2870 3088 7.982919 ACAAAGTAGTACACATACACACTTGAA 59.017 33.333 2.52 0.00 38.16 2.69
2871 3089 7.941795 AAGTAGTACACATACACACTTGAAC 57.058 36.000 2.52 0.00 37.41 3.18
2872 3090 7.046292 AGTAGTACACATACACACTTGAACA 57.954 36.000 2.52 0.00 33.30 3.18
2873 3091 7.667557 AGTAGTACACATACACACTTGAACAT 58.332 34.615 2.52 0.00 33.30 2.71
2874 3092 8.148351 AGTAGTACACATACACACTTGAACATT 58.852 33.333 2.52 0.00 33.30 2.71
2875 3093 7.801716 AGTACACATACACACTTGAACATTT 57.198 32.000 0.00 0.00 33.30 2.32
2876 3094 8.896320 AGTACACATACACACTTGAACATTTA 57.104 30.769 0.00 0.00 33.30 1.40
2877 3095 9.502091 AGTACACATACACACTTGAACATTTAT 57.498 29.630 0.00 0.00 33.30 1.40
2878 3096 9.755064 GTACACATACACACTTGAACATTTATC 57.245 33.333 0.00 0.00 0.00 1.75
2879 3097 8.389779 ACACATACACACTTGAACATTTATCA 57.610 30.769 0.00 0.00 0.00 2.15
2880 3098 8.845227 ACACATACACACTTGAACATTTATCAA 58.155 29.630 0.00 0.00 35.60 2.57
2891 3109 7.452880 TGAACATTTATCAAGAAAGGGAGTG 57.547 36.000 0.00 0.00 0.00 3.51
2892 3110 7.004086 TGAACATTTATCAAGAAAGGGAGTGT 58.996 34.615 0.00 0.00 0.00 3.55
2893 3111 8.160765 TGAACATTTATCAAGAAAGGGAGTGTA 58.839 33.333 0.00 0.00 0.00 2.90
2894 3112 9.178758 GAACATTTATCAAGAAAGGGAGTGTAT 57.821 33.333 0.00 0.00 0.00 2.29
2895 3113 8.511604 ACATTTATCAAGAAAGGGAGTGTATG 57.488 34.615 0.00 0.00 0.00 2.39
2896 3114 8.109634 ACATTTATCAAGAAAGGGAGTGTATGT 58.890 33.333 0.00 0.00 0.00 2.29
2897 3115 9.613428 CATTTATCAAGAAAGGGAGTGTATGTA 57.387 33.333 0.00 0.00 0.00 2.29
2901 3119 8.738645 ATCAAGAAAGGGAGTGTATGTATTTC 57.261 34.615 0.00 0.00 0.00 2.17
2902 3120 7.110155 TCAAGAAAGGGAGTGTATGTATTTCC 58.890 38.462 0.00 0.00 0.00 3.13
2903 3121 6.636454 AGAAAGGGAGTGTATGTATTTCCA 57.364 37.500 0.00 0.00 0.00 3.53
2904 3122 6.653989 AGAAAGGGAGTGTATGTATTTCCAG 58.346 40.000 0.00 0.00 0.00 3.86
2905 3123 6.215636 AGAAAGGGAGTGTATGTATTTCCAGT 59.784 38.462 0.00 0.00 0.00 4.00
2906 3124 6.388619 AAGGGAGTGTATGTATTTCCAGTT 57.611 37.500 0.00 0.00 0.00 3.16
2907 3125 6.388619 AGGGAGTGTATGTATTTCCAGTTT 57.611 37.500 0.00 0.00 0.00 2.66
2908 3126 6.180472 AGGGAGTGTATGTATTTCCAGTTTG 58.820 40.000 0.00 0.00 0.00 2.93
2909 3127 6.012858 AGGGAGTGTATGTATTTCCAGTTTGA 60.013 38.462 0.00 0.00 0.00 2.69
2910 3128 6.316390 GGGAGTGTATGTATTTCCAGTTTGAG 59.684 42.308 0.00 0.00 0.00 3.02
2911 3129 6.879458 GGAGTGTATGTATTTCCAGTTTGAGT 59.121 38.462 0.00 0.00 0.00 3.41
2912 3130 7.148407 GGAGTGTATGTATTTCCAGTTTGAGTG 60.148 40.741 0.00 0.00 0.00 3.51
2913 3131 7.224297 AGTGTATGTATTTCCAGTTTGAGTGT 58.776 34.615 0.00 0.00 0.00 3.55
2914 3132 7.173218 AGTGTATGTATTTCCAGTTTGAGTGTG 59.827 37.037 0.00 0.00 0.00 3.82
2915 3133 5.964958 ATGTATTTCCAGTTTGAGTGTGG 57.035 39.130 0.00 0.00 0.00 4.17
2916 3134 5.042463 TGTATTTCCAGTTTGAGTGTGGA 57.958 39.130 0.00 0.00 38.65 4.02
2917 3135 5.441500 TGTATTTCCAGTTTGAGTGTGGAA 58.558 37.500 0.00 0.00 46.42 3.53
2922 3140 5.241403 TCCAGTTTGAGTGTGGAATATGT 57.759 39.130 0.00 0.00 37.43 2.29
2923 3141 5.630121 TCCAGTTTGAGTGTGGAATATGTT 58.370 37.500 0.00 0.00 37.43 2.71
2924 3142 5.705441 TCCAGTTTGAGTGTGGAATATGTTC 59.295 40.000 0.00 0.00 37.43 3.18
2925 3143 5.707298 CCAGTTTGAGTGTGGAATATGTTCT 59.293 40.000 1.99 0.00 34.68 3.01
2926 3144 6.348786 CCAGTTTGAGTGTGGAATATGTTCTG 60.349 42.308 1.99 0.00 34.68 3.02
2927 3145 5.707298 AGTTTGAGTGTGGAATATGTTCTGG 59.293 40.000 1.99 0.00 34.68 3.86
2928 3146 5.497464 TTGAGTGTGGAATATGTTCTGGA 57.503 39.130 1.99 0.00 34.68 3.86
2929 3147 5.698741 TGAGTGTGGAATATGTTCTGGAT 57.301 39.130 1.99 0.00 34.68 3.41
2930 3148 5.430886 TGAGTGTGGAATATGTTCTGGATG 58.569 41.667 1.99 0.00 34.68 3.51
2931 3149 5.045651 TGAGTGTGGAATATGTTCTGGATGT 60.046 40.000 1.99 0.00 34.68 3.06
2932 3150 5.819991 AGTGTGGAATATGTTCTGGATGTT 58.180 37.500 1.99 0.00 34.68 2.71
2933 3151 6.957631 AGTGTGGAATATGTTCTGGATGTTA 58.042 36.000 1.99 0.00 34.68 2.41
2934 3152 7.402054 AGTGTGGAATATGTTCTGGATGTTAA 58.598 34.615 1.99 0.00 34.68 2.01
2935 3153 7.888021 AGTGTGGAATATGTTCTGGATGTTAAA 59.112 33.333 1.99 0.00 34.68 1.52
2936 3154 8.686334 GTGTGGAATATGTTCTGGATGTTAAAT 58.314 33.333 1.99 0.00 34.68 1.40
2937 3155 9.253832 TGTGGAATATGTTCTGGATGTTAAATT 57.746 29.630 1.99 0.00 34.68 1.82
2942 3160 8.947055 ATATGTTCTGGATGTTAAATTTTGCC 57.053 30.769 0.00 0.00 0.00 4.52
2943 3161 6.418057 TGTTCTGGATGTTAAATTTTGCCT 57.582 33.333 0.00 0.00 0.00 4.75
2944 3162 7.531857 TGTTCTGGATGTTAAATTTTGCCTA 57.468 32.000 0.00 0.00 0.00 3.93
2945 3163 8.133024 TGTTCTGGATGTTAAATTTTGCCTAT 57.867 30.769 0.00 0.00 0.00 2.57
2946 3164 8.592809 TGTTCTGGATGTTAAATTTTGCCTATT 58.407 29.630 0.00 0.00 0.00 1.73
3007 3225 8.638565 GTGAACAAATTTAATTTCATGTCCTCG 58.361 33.333 0.00 0.00 30.96 4.63
3021 3239 7.186021 TCATGTCCTCGAAGTTTAGAAAAAC 57.814 36.000 0.00 0.00 44.47 2.43
3022 3240 6.764085 TCATGTCCTCGAAGTTTAGAAAAACA 59.236 34.615 4.04 0.00 46.18 2.83
3023 3241 6.354039 TGTCCTCGAAGTTTAGAAAAACAC 57.646 37.500 4.04 0.00 46.18 3.32
3024 3242 5.875910 TGTCCTCGAAGTTTAGAAAAACACA 59.124 36.000 4.04 0.00 46.18 3.72
3157 3380 6.417930 GCACAATTTACTTTGTTTCCTCTCAC 59.582 38.462 0.00 0.00 37.73 3.51
3234 3469 5.057843 ACATCTGGATGAGCATATTTGGT 57.942 39.130 16.27 0.00 41.20 3.67
3290 3525 8.503458 TGCTATATATACGAACTTCTAGGTCC 57.497 38.462 0.00 0.00 0.00 4.46
3317 3552 4.217118 GTCCGTCTACAACTACCAAGAAGA 59.783 45.833 0.00 0.00 0.00 2.87
3383 3618 3.438087 CCTGTTATTGCTGGAAGACTGTG 59.562 47.826 0.00 0.00 34.07 3.66
3390 3625 4.623932 TGCTGGAAGACTGTGACTTTAT 57.376 40.909 0.00 0.00 34.07 1.40
3413 3648 6.367374 TTTTGGAAAGAAGACCCTTTGTTT 57.633 33.333 0.00 0.00 36.58 2.83
3504 3740 5.869888 ACTACTGTACTTTAGATGCAACAGC 59.130 40.000 10.12 0.00 38.27 4.40
3510 3746 5.113502 ACTTTAGATGCAACAGCAGTTTC 57.886 39.130 0.00 0.00 42.36 2.78
3512 3748 4.488126 TTAGATGCAACAGCAGTTTCAC 57.512 40.909 0.00 0.00 42.36 3.18
3568 3804 3.159472 TCTGTTTCTCAGGCATGCAAAT 58.841 40.909 21.36 1.15 43.76 2.32
3574 3810 5.465532 TTCTCAGGCATGCAAATTTGTTA 57.534 34.783 21.36 9.50 0.00 2.41
3579 3815 6.155827 TCAGGCATGCAAATTTGTTAACTAC 58.844 36.000 21.36 1.78 0.00 2.73
3580 3816 6.015519 TCAGGCATGCAAATTTGTTAACTACT 60.016 34.615 21.36 7.00 0.00 2.57
3581 3817 6.308766 CAGGCATGCAAATTTGTTAACTACTC 59.691 38.462 21.36 0.40 0.00 2.59
3582 3818 5.576774 GGCATGCAAATTTGTTAACTACTCC 59.423 40.000 21.36 5.55 0.00 3.85
3583 3819 5.576774 GCATGCAAATTTGTTAACTACTCCC 59.423 40.000 19.03 0.00 0.00 4.30
3584 3820 6.572314 GCATGCAAATTTGTTAACTACTCCCT 60.572 38.462 19.03 0.00 0.00 4.20
3585 3821 6.569179 TGCAAATTTGTTAACTACTCCCTC 57.431 37.500 19.03 0.00 0.00 4.30
3586 3822 6.303839 TGCAAATTTGTTAACTACTCCCTCT 58.696 36.000 19.03 0.00 0.00 3.69
3587 3823 7.455058 TGCAAATTTGTTAACTACTCCCTCTA 58.545 34.615 19.03 0.00 0.00 2.43
3595 4166 9.939802 TTGTTAACTACTCCCTCTAAAAGAATC 57.060 33.333 7.22 0.00 0.00 2.52
3625 4196 9.862149 TTTTTAGAAGACCCTCTGTAAAAGAAT 57.138 29.630 0.00 0.00 32.22 2.40
3626 4197 9.503399 TTTTAGAAGACCCTCTGTAAAAGAATC 57.497 33.333 0.00 0.00 33.37 2.52
3627 4198 6.943899 AGAAGACCCTCTGTAAAAGAATCT 57.056 37.500 0.00 0.00 33.37 2.40
3628 4199 9.543231 TTAGAAGACCCTCTGTAAAAGAATCTA 57.457 33.333 0.00 0.00 33.37 1.98
3629 4200 8.616799 AGAAGACCCTCTGTAAAAGAATCTAT 57.383 34.615 0.00 0.00 33.37 1.98
3630 4201 9.052365 AGAAGACCCTCTGTAAAAGAATCTATT 57.948 33.333 0.00 0.00 33.37 1.73
3631 4202 9.674068 GAAGACCCTCTGTAAAAGAATCTATTT 57.326 33.333 0.00 0.00 33.37 1.40
3632 4203 9.674068 AAGACCCTCTGTAAAAGAATCTATTTC 57.326 33.333 0.00 0.00 33.37 2.17
3634 4205 9.320352 GACCCTCTGTAAAAGAATCTATTTCTC 57.680 37.037 0.00 0.00 44.09 2.87
3641 4212 9.601217 TGTAAAAGAATCTATTTCTCTAGCACC 57.399 33.333 0.00 0.00 44.09 5.01
3706 4287 3.961414 TGGAAACCGGCCTGGGTC 61.961 66.667 16.44 12.64 35.58 4.46
3725 4306 4.156739 GGGTCACCAGAGCAGATTTTTAAG 59.843 45.833 0.00 0.00 43.97 1.85
3735 4316 3.427638 GCAGATTTTTAAGAGAACGGCCC 60.428 47.826 0.00 0.00 0.00 5.80
3756 4337 2.896745 GCCAAAAGCCCAATATCCAG 57.103 50.000 0.00 0.00 34.35 3.86
3765 4346 2.573462 GCCCAATATCCAGGCTGATCTA 59.427 50.000 17.94 4.61 43.62 1.98
3775 4356 1.365633 GCTGATCTAGGGCCTCACG 59.634 63.158 10.74 0.00 0.00 4.35
3784 4365 0.834687 AGGGCCTCACGTTTCTACCA 60.835 55.000 0.00 0.00 0.00 3.25
3794 4375 6.975772 CCTCACGTTTCTACCAAATTTCAAAA 59.024 34.615 0.00 0.00 0.00 2.44
3948 4548 3.846602 CTTTGCAAGCCCGGCACAC 62.847 63.158 13.15 0.00 41.75 3.82
3962 4563 2.513666 ACACGGTATGCCCATGCG 60.514 61.111 0.00 0.00 41.78 4.73
3988 4589 5.089970 AGCAACAGTTATGTGCAGATAGA 57.910 39.130 3.53 0.00 40.39 1.98
4037 4641 3.362831 GCGACACATGCAAAGAAAGAATG 59.637 43.478 0.00 0.00 0.00 2.67
4040 4644 5.860182 CGACACATGCAAAGAAAGAATGATT 59.140 36.000 0.00 0.00 0.00 2.57
4050 4654 9.719279 GCAAAGAAAGAATGATTAGAGATTCAG 57.281 33.333 0.00 0.00 31.98 3.02
4117 4721 2.964464 TGGTGATTTTTGCACAGGTCAT 59.036 40.909 0.00 0.00 37.99 3.06
4186 4790 8.137745 TGTATCCATTCTCTACATGCATGATA 57.862 34.615 32.75 18.63 0.00 2.15
4187 4791 8.765517 TGTATCCATTCTCTACATGCATGATAT 58.234 33.333 32.75 13.48 0.00 1.63
4188 4792 9.610705 GTATCCATTCTCTACATGCATGATATT 57.389 33.333 32.75 13.10 0.00 1.28
4234 4838 9.970395 TTAAAATAGTGTGTTTTCTCTCTCGTA 57.030 29.630 0.00 0.00 31.71 3.43
4235 4839 8.882415 AAAATAGTGTGTTTTCTCTCTCGTAA 57.118 30.769 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.494893 TCAACAAAGTAATATGTGGCTGTC 57.505 37.500 0.00 0.00 0.00 3.51
69 70 1.522092 CCACGCTCAAGCCATAGGA 59.478 57.895 0.00 0.00 37.91 2.94
82 83 3.766496 AAACACGCTTTGGCCACGC 62.766 57.895 3.88 11.01 34.44 5.34
83 84 1.943693 CAAACACGCTTTGGCCACG 60.944 57.895 3.88 9.23 34.44 4.94
84 85 2.237066 GCAAACACGCTTTGGCCAC 61.237 57.895 3.88 0.00 34.44 5.01
85 86 2.105930 GCAAACACGCTTTGGCCA 59.894 55.556 0.00 0.00 34.44 5.36
86 87 1.950630 CAGCAAACACGCTTTGGCC 60.951 57.895 0.00 0.00 41.38 5.36
87 88 2.588585 GCAGCAAACACGCTTTGGC 61.589 57.895 7.95 0.00 41.38 4.52
88 89 0.310543 TAGCAGCAAACACGCTTTGG 59.689 50.000 0.00 0.00 41.38 3.28
89 90 1.780860 GTTAGCAGCAAACACGCTTTG 59.219 47.619 0.00 2.48 41.38 2.77
90 91 1.676006 AGTTAGCAGCAAACACGCTTT 59.324 42.857 0.00 0.00 41.38 3.51
91 92 1.308998 AGTTAGCAGCAAACACGCTT 58.691 45.000 0.00 0.00 41.38 4.68
116 117 0.321564 TATCGCATGGGGCATAGTGC 60.322 55.000 10.21 0.00 45.17 4.40
215 225 2.455032 CTCTGATAGCGACCGAAGTTG 58.545 52.381 0.00 0.00 0.00 3.16
230 240 5.793817 TCAGCTTTATTGTACTTGCTCTGA 58.206 37.500 0.00 0.00 0.00 3.27
231 241 5.641209 ACTCAGCTTTATTGTACTTGCTCTG 59.359 40.000 0.00 0.00 0.00 3.35
233 243 5.639506 TGACTCAGCTTTATTGTACTTGCTC 59.360 40.000 0.00 0.00 0.00 4.26
235 245 5.862811 CTGACTCAGCTTTATTGTACTTGC 58.137 41.667 0.00 0.00 0.00 4.01
250 260 4.662468 TTCTTATAGCCAGCTGACTCAG 57.338 45.455 17.39 6.38 34.12 3.35
251 261 5.620738 ATTTCTTATAGCCAGCTGACTCA 57.379 39.130 17.39 0.00 0.00 3.41
252 262 7.713073 AGTTTATTTCTTATAGCCAGCTGACTC 59.287 37.037 17.39 3.75 0.00 3.36
253 263 7.569240 AGTTTATTTCTTATAGCCAGCTGACT 58.431 34.615 17.39 12.46 0.00 3.41
254 264 7.793927 AGTTTATTTCTTATAGCCAGCTGAC 57.206 36.000 17.39 2.52 0.00 3.51
255 265 8.705594 ACTAGTTTATTTCTTATAGCCAGCTGA 58.294 33.333 17.39 0.00 0.00 4.26
256 266 8.894768 ACTAGTTTATTTCTTATAGCCAGCTG 57.105 34.615 6.78 6.78 0.00 4.24
286 296 9.675464 TGTTTTCTTTTCTCCAAGTAAGTAAGA 57.325 29.630 0.00 0.00 0.00 2.10
287 297 9.937175 CTGTTTTCTTTTCTCCAAGTAAGTAAG 57.063 33.333 0.00 0.00 0.00 2.34
288 298 9.675464 TCTGTTTTCTTTTCTCCAAGTAAGTAA 57.325 29.630 0.00 0.00 0.00 2.24
289 299 9.675464 TTCTGTTTTCTTTTCTCCAAGTAAGTA 57.325 29.630 0.00 0.00 0.00 2.24
290 300 8.575649 TTCTGTTTTCTTTTCTCCAAGTAAGT 57.424 30.769 0.00 0.00 0.00 2.24
291 301 8.893727 TCTTCTGTTTTCTTTTCTCCAAGTAAG 58.106 33.333 0.00 0.00 0.00 2.34
292 302 8.801882 TCTTCTGTTTTCTTTTCTCCAAGTAA 57.198 30.769 0.00 0.00 0.00 2.24
293 303 8.265055 TCTCTTCTGTTTTCTTTTCTCCAAGTA 58.735 33.333 0.00 0.00 0.00 2.24
294 304 7.112779 TCTCTTCTGTTTTCTTTTCTCCAAGT 58.887 34.615 0.00 0.00 0.00 3.16
295 305 7.497249 TCTCTCTTCTGTTTTCTTTTCTCCAAG 59.503 37.037 0.00 0.00 0.00 3.61
296 306 7.338710 TCTCTCTTCTGTTTTCTTTTCTCCAA 58.661 34.615 0.00 0.00 0.00 3.53
297 307 6.889198 TCTCTCTTCTGTTTTCTTTTCTCCA 58.111 36.000 0.00 0.00 0.00 3.86
298 308 7.713073 TCTTCTCTCTTCTGTTTTCTTTTCTCC 59.287 37.037 0.00 0.00 0.00 3.71
299 309 8.655651 TCTTCTCTCTTCTGTTTTCTTTTCTC 57.344 34.615 0.00 0.00 0.00 2.87
303 313 8.998377 GCTTATCTTCTCTCTTCTGTTTTCTTT 58.002 33.333 0.00 0.00 0.00 2.52
304 314 7.330700 CGCTTATCTTCTCTCTTCTGTTTTCTT 59.669 37.037 0.00 0.00 0.00 2.52
305 315 6.811170 CGCTTATCTTCTCTCTTCTGTTTTCT 59.189 38.462 0.00 0.00 0.00 2.52
306 316 6.035542 CCGCTTATCTTCTCTCTTCTGTTTTC 59.964 42.308 0.00 0.00 0.00 2.29
307 317 5.872070 CCGCTTATCTTCTCTCTTCTGTTTT 59.128 40.000 0.00 0.00 0.00 2.43
308 318 5.415221 CCGCTTATCTTCTCTCTTCTGTTT 58.585 41.667 0.00 0.00 0.00 2.83
309 319 4.142049 CCCGCTTATCTTCTCTCTTCTGTT 60.142 45.833 0.00 0.00 0.00 3.16
310 320 3.383185 CCCGCTTATCTTCTCTCTTCTGT 59.617 47.826 0.00 0.00 0.00 3.41
311 321 3.798548 GCCCGCTTATCTTCTCTCTTCTG 60.799 52.174 0.00 0.00 0.00 3.02
312 322 2.364002 GCCCGCTTATCTTCTCTCTTCT 59.636 50.000 0.00 0.00 0.00 2.85
313 323 2.364002 AGCCCGCTTATCTTCTCTCTTC 59.636 50.000 0.00 0.00 0.00 2.87
314 324 2.364002 GAGCCCGCTTATCTTCTCTCTT 59.636 50.000 0.00 0.00 0.00 2.85
315 325 1.960689 GAGCCCGCTTATCTTCTCTCT 59.039 52.381 0.00 0.00 0.00 3.10
316 326 1.960689 AGAGCCCGCTTATCTTCTCTC 59.039 52.381 0.00 0.00 0.00 3.20
317 327 2.080654 AGAGCCCGCTTATCTTCTCT 57.919 50.000 0.00 0.00 0.00 3.10
318 328 2.478831 CAAGAGCCCGCTTATCTTCTC 58.521 52.381 0.00 0.00 30.99 2.87
319 329 1.139853 CCAAGAGCCCGCTTATCTTCT 59.860 52.381 0.00 0.00 30.99 2.85
320 330 1.134371 ACCAAGAGCCCGCTTATCTTC 60.134 52.381 0.00 0.00 30.99 2.87
321 331 0.912486 ACCAAGAGCCCGCTTATCTT 59.088 50.000 0.00 0.00 33.62 2.40
322 332 0.179000 CACCAAGAGCCCGCTTATCT 59.821 55.000 0.00 0.00 0.00 1.98
323 333 0.178068 TCACCAAGAGCCCGCTTATC 59.822 55.000 0.00 0.00 0.00 1.75
324 334 0.618458 TTCACCAAGAGCCCGCTTAT 59.382 50.000 0.00 0.00 0.00 1.73
325 335 0.036388 CTTCACCAAGAGCCCGCTTA 60.036 55.000 0.00 0.00 0.00 3.09
326 336 1.302832 CTTCACCAAGAGCCCGCTT 60.303 57.895 0.00 0.00 0.00 4.68
327 337 2.217038 TCTTCACCAAGAGCCCGCT 61.217 57.895 0.00 0.00 33.38 5.52
328 338 2.347490 TCTTCACCAAGAGCCCGC 59.653 61.111 0.00 0.00 33.38 6.13
344 354 1.068194 AGCACGTGTTAGAGCTGACTC 60.068 52.381 18.38 0.00 43.82 3.36
345 355 0.962489 AGCACGTGTTAGAGCTGACT 59.038 50.000 18.38 0.00 36.72 3.41
346 356 1.341606 GAGCACGTGTTAGAGCTGAC 58.658 55.000 18.38 0.00 38.14 3.51
347 357 0.243907 GGAGCACGTGTTAGAGCTGA 59.756 55.000 18.38 0.00 38.14 4.26
348 358 0.244994 AGGAGCACGTGTTAGAGCTG 59.755 55.000 18.38 0.00 38.14 4.24
349 359 1.746220 CTAGGAGCACGTGTTAGAGCT 59.254 52.381 18.38 6.45 40.61 4.09
350 360 1.202313 CCTAGGAGCACGTGTTAGAGC 60.202 57.143 18.38 0.54 0.00 4.09
351 361 1.202313 GCCTAGGAGCACGTGTTAGAG 60.202 57.143 18.38 8.83 0.00 2.43
352 362 0.815734 GCCTAGGAGCACGTGTTAGA 59.184 55.000 18.38 0.00 0.00 2.10
353 363 0.530744 TGCCTAGGAGCACGTGTTAG 59.469 55.000 18.38 13.08 38.00 2.34
354 364 2.661054 TGCCTAGGAGCACGTGTTA 58.339 52.632 18.38 4.44 38.00 2.41
355 365 3.466881 TGCCTAGGAGCACGTGTT 58.533 55.556 18.38 11.90 38.00 3.32
361 371 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
362 372 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
363 373 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
364 374 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
365 375 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
366 376 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
367 377 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
368 378 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
369 379 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
370 380 4.574599 ACCTTTCATTCTCACAAAGTGC 57.425 40.909 0.00 0.00 32.98 4.40
371 381 6.088824 GCATACCTTTCATTCTCACAAAGTG 58.911 40.000 0.00 0.00 34.45 3.16
372 382 5.183904 GGCATACCTTTCATTCTCACAAAGT 59.816 40.000 0.00 0.00 0.00 2.66
373 383 5.183713 TGGCATACCTTTCATTCTCACAAAG 59.816 40.000 0.00 0.00 36.63 2.77
374 384 5.076182 TGGCATACCTTTCATTCTCACAAA 58.924 37.500 0.00 0.00 36.63 2.83
375 385 4.661222 TGGCATACCTTTCATTCTCACAA 58.339 39.130 0.00 0.00 36.63 3.33
376 386 4.299586 TGGCATACCTTTCATTCTCACA 57.700 40.909 0.00 0.00 36.63 3.58
377 387 8.621532 TTATATGGCATACCTTTCATTCTCAC 57.378 34.615 9.83 0.00 36.63 3.51
442 452 8.573885 TGATAGTCCGTCGATTTTATAGTCAAT 58.426 33.333 0.00 0.00 0.00 2.57
443 453 7.933396 TGATAGTCCGTCGATTTTATAGTCAA 58.067 34.615 0.00 0.00 0.00 3.18
444 454 7.500720 TGATAGTCCGTCGATTTTATAGTCA 57.499 36.000 0.00 0.00 0.00 3.41
445 455 8.851416 CATTGATAGTCCGTCGATTTTATAGTC 58.149 37.037 0.00 0.00 0.00 2.59
446 456 8.573885 TCATTGATAGTCCGTCGATTTTATAGT 58.426 33.333 0.00 0.00 0.00 2.12
447 457 8.851416 GTCATTGATAGTCCGTCGATTTTATAG 58.149 37.037 0.00 0.00 0.00 1.31
448 458 8.354426 TGTCATTGATAGTCCGTCGATTTTATA 58.646 33.333 0.00 0.00 0.00 0.98
449 459 7.207383 TGTCATTGATAGTCCGTCGATTTTAT 58.793 34.615 0.00 0.00 0.00 1.40
450 460 6.566141 TGTCATTGATAGTCCGTCGATTTTA 58.434 36.000 0.00 0.00 0.00 1.52
451 461 5.416083 TGTCATTGATAGTCCGTCGATTTT 58.584 37.500 0.00 0.00 0.00 1.82
452 462 5.006153 TGTCATTGATAGTCCGTCGATTT 57.994 39.130 0.00 0.00 0.00 2.17
453 463 4.649088 TGTCATTGATAGTCCGTCGATT 57.351 40.909 0.00 0.00 0.00 3.34
454 464 4.649088 TTGTCATTGATAGTCCGTCGAT 57.351 40.909 0.00 0.00 0.00 3.59
455 465 4.097286 TCATTGTCATTGATAGTCCGTCGA 59.903 41.667 0.00 0.00 0.00 4.20
456 466 4.207224 GTCATTGTCATTGATAGTCCGTCG 59.793 45.833 0.98 0.00 0.00 5.12
457 467 5.109210 TGTCATTGTCATTGATAGTCCGTC 58.891 41.667 0.98 0.00 0.00 4.79
458 468 5.084818 TGTCATTGTCATTGATAGTCCGT 57.915 39.130 0.98 0.00 0.00 4.69
459 469 5.754890 TCATGTCATTGTCATTGATAGTCCG 59.245 40.000 0.98 0.00 0.00 4.79
460 470 6.539826 TGTCATGTCATTGTCATTGATAGTCC 59.460 38.462 0.98 0.00 0.00 3.85
461 471 7.543947 TGTCATGTCATTGTCATTGATAGTC 57.456 36.000 0.98 0.00 0.00 2.59
462 472 7.926674 TTGTCATGTCATTGTCATTGATAGT 57.073 32.000 0.98 0.00 0.00 2.12
464 474 8.562052 GCTATTGTCATGTCATTGTCATTGATA 58.438 33.333 0.98 0.00 0.00 2.15
465 475 7.284716 AGCTATTGTCATGTCATTGTCATTGAT 59.715 33.333 0.98 0.00 0.00 2.57
466 476 6.600427 AGCTATTGTCATGTCATTGTCATTGA 59.400 34.615 0.00 0.00 0.00 2.57
467 477 6.792326 AGCTATTGTCATGTCATTGTCATTG 58.208 36.000 0.00 0.00 0.00 2.82
468 478 7.400599 AAGCTATTGTCATGTCATTGTCATT 57.599 32.000 0.00 0.00 0.00 2.57
469 479 8.687292 ATAAGCTATTGTCATGTCATTGTCAT 57.313 30.769 0.00 0.00 0.00 3.06
470 480 9.264719 CTATAAGCTATTGTCATGTCATTGTCA 57.735 33.333 0.00 0.00 0.00 3.58
471 481 8.226448 GCTATAAGCTATTGTCATGTCATTGTC 58.774 37.037 0.00 0.00 38.45 3.18
472 482 7.173907 GGCTATAAGCTATTGTCATGTCATTGT 59.826 37.037 0.00 0.00 41.99 2.71
473 483 7.173735 TGGCTATAAGCTATTGTCATGTCATTG 59.826 37.037 0.00 0.00 41.99 2.82
474 484 7.226441 TGGCTATAAGCTATTGTCATGTCATT 58.774 34.615 0.00 0.00 41.99 2.57
475 485 6.772605 TGGCTATAAGCTATTGTCATGTCAT 58.227 36.000 0.00 0.00 41.99 3.06
476 486 6.173427 TGGCTATAAGCTATTGTCATGTCA 57.827 37.500 0.00 0.00 41.99 3.58
477 487 6.875726 TGATGGCTATAAGCTATTGTCATGTC 59.124 38.462 8.53 0.00 42.74 3.06
478 488 6.772605 TGATGGCTATAAGCTATTGTCATGT 58.227 36.000 8.53 0.00 42.74 3.21
479 489 6.877855 ACTGATGGCTATAAGCTATTGTCATG 59.122 38.462 8.53 0.00 42.74 3.07
480 490 7.013823 ACTGATGGCTATAAGCTATTGTCAT 57.986 36.000 0.00 0.00 42.74 3.06
481 491 6.425210 ACTGATGGCTATAAGCTATTGTCA 57.575 37.500 0.00 0.00 42.74 3.58
482 492 7.579726 CAAACTGATGGCTATAAGCTATTGTC 58.420 38.462 0.00 0.00 42.74 3.18
483 493 6.016777 GCAAACTGATGGCTATAAGCTATTGT 60.017 38.462 0.00 0.37 42.74 2.71
484 494 6.376978 GCAAACTGATGGCTATAAGCTATTG 58.623 40.000 0.00 0.00 42.74 1.90
485 495 5.474876 GGCAAACTGATGGCTATAAGCTATT 59.525 40.000 0.00 0.00 42.74 1.73
486 496 5.006386 GGCAAACTGATGGCTATAAGCTAT 58.994 41.667 0.00 0.00 45.48 2.97
487 497 4.141505 TGGCAAACTGATGGCTATAAGCTA 60.142 41.667 0.00 0.00 45.45 3.32
488 498 3.217626 GGCAAACTGATGGCTATAAGCT 58.782 45.455 0.00 0.00 41.99 3.74
489 499 2.951642 TGGCAAACTGATGGCTATAAGC 59.048 45.455 0.00 0.00 45.45 3.09
490 500 6.000219 AGTATGGCAAACTGATGGCTATAAG 59.000 40.000 0.00 0.00 45.45 1.73
491 501 5.940617 AGTATGGCAAACTGATGGCTATAA 58.059 37.500 0.00 0.00 45.45 0.98
492 502 5.567037 AGTATGGCAAACTGATGGCTATA 57.433 39.130 0.00 0.80 45.45 1.31
493 503 4.443978 AGTATGGCAAACTGATGGCTAT 57.556 40.909 0.00 1.66 45.45 2.97
494 504 3.931907 AGTATGGCAAACTGATGGCTA 57.068 42.857 0.00 0.00 45.45 3.93
495 505 2.814805 AGTATGGCAAACTGATGGCT 57.185 45.000 0.00 2.89 45.45 4.75
496 506 6.438763 GTTAATAGTATGGCAAACTGATGGC 58.561 40.000 0.00 5.19 45.44 4.40
497 507 6.545666 TGGTTAATAGTATGGCAAACTGATGG 59.454 38.462 0.00 0.00 0.00 3.51
498 508 7.566760 TGGTTAATAGTATGGCAAACTGATG 57.433 36.000 0.00 0.00 0.00 3.07
499 509 7.255590 GCATGGTTAATAGTATGGCAAACTGAT 60.256 37.037 0.00 0.00 0.00 2.90
500 510 6.039270 GCATGGTTAATAGTATGGCAAACTGA 59.961 38.462 0.00 0.00 0.00 3.41
501 511 6.039717 AGCATGGTTAATAGTATGGCAAACTG 59.960 38.462 0.00 0.00 0.00 3.16
502 512 6.129179 AGCATGGTTAATAGTATGGCAAACT 58.871 36.000 0.00 0.00 0.00 2.66
503 513 6.263168 AGAGCATGGTTAATAGTATGGCAAAC 59.737 38.462 0.00 0.00 0.00 2.93
504 514 6.364701 AGAGCATGGTTAATAGTATGGCAAA 58.635 36.000 0.00 0.00 0.00 3.68
505 515 5.940617 AGAGCATGGTTAATAGTATGGCAA 58.059 37.500 0.00 0.00 0.00 4.52
506 516 5.071653 TGAGAGCATGGTTAATAGTATGGCA 59.928 40.000 0.00 0.00 0.00 4.92
507 517 5.551233 TGAGAGCATGGTTAATAGTATGGC 58.449 41.667 0.00 0.00 0.00 4.40
508 518 6.763355 ACTGAGAGCATGGTTAATAGTATGG 58.237 40.000 0.00 0.00 0.00 2.74
509 519 8.668510 AAACTGAGAGCATGGTTAATAGTATG 57.331 34.615 0.00 0.00 0.00 2.39
510 520 8.486210 TGAAACTGAGAGCATGGTTAATAGTAT 58.514 33.333 0.00 0.00 0.00 2.12
511 521 7.847096 TGAAACTGAGAGCATGGTTAATAGTA 58.153 34.615 0.00 0.00 0.00 1.82
512 522 6.711277 TGAAACTGAGAGCATGGTTAATAGT 58.289 36.000 0.00 0.00 0.00 2.12
513 523 7.615582 TTGAAACTGAGAGCATGGTTAATAG 57.384 36.000 0.00 0.00 0.00 1.73
514 524 9.679661 TTATTGAAACTGAGAGCATGGTTAATA 57.320 29.630 0.00 0.00 0.00 0.98
515 525 8.462016 GTTATTGAAACTGAGAGCATGGTTAAT 58.538 33.333 0.00 0.00 0.00 1.40
516 526 7.094377 GGTTATTGAAACTGAGAGCATGGTTAA 60.094 37.037 0.00 0.00 0.00 2.01
517 527 6.374333 GGTTATTGAAACTGAGAGCATGGTTA 59.626 38.462 0.00 0.00 0.00 2.85
518 528 5.183904 GGTTATTGAAACTGAGAGCATGGTT 59.816 40.000 0.00 0.00 0.00 3.67
519 529 4.702131 GGTTATTGAAACTGAGAGCATGGT 59.298 41.667 0.00 0.00 0.00 3.55
520 530 4.096984 GGGTTATTGAAACTGAGAGCATGG 59.903 45.833 0.00 0.00 0.00 3.66
521 531 4.701651 TGGGTTATTGAAACTGAGAGCATG 59.298 41.667 0.00 0.00 0.00 4.06
522 532 4.922206 TGGGTTATTGAAACTGAGAGCAT 58.078 39.130 0.00 0.00 0.00 3.79
523 533 4.365514 TGGGTTATTGAAACTGAGAGCA 57.634 40.909 0.00 0.00 0.00 4.26
524 534 4.156739 CCTTGGGTTATTGAAACTGAGAGC 59.843 45.833 0.00 0.00 0.00 4.09
525 535 4.156739 GCCTTGGGTTATTGAAACTGAGAG 59.843 45.833 0.00 0.00 0.00 3.20
526 536 4.079253 GCCTTGGGTTATTGAAACTGAGA 58.921 43.478 0.00 0.00 0.00 3.27
527 537 4.082125 AGCCTTGGGTTATTGAAACTGAG 58.918 43.478 0.00 0.00 0.00 3.35
528 538 3.826157 CAGCCTTGGGTTATTGAAACTGA 59.174 43.478 0.00 0.00 0.00 3.41
529 539 3.614870 GCAGCCTTGGGTTATTGAAACTG 60.615 47.826 0.00 0.00 0.00 3.16
530 540 2.562738 GCAGCCTTGGGTTATTGAAACT 59.437 45.455 0.00 0.00 0.00 2.66
531 541 2.298729 TGCAGCCTTGGGTTATTGAAAC 59.701 45.455 0.00 0.00 0.00 2.78
532 542 2.603021 TGCAGCCTTGGGTTATTGAAA 58.397 42.857 0.00 0.00 0.00 2.69
533 543 2.300956 TGCAGCCTTGGGTTATTGAA 57.699 45.000 0.00 0.00 0.00 2.69
534 544 2.378038 GATGCAGCCTTGGGTTATTGA 58.622 47.619 0.00 0.00 0.00 2.57
535 545 1.410153 GGATGCAGCCTTGGGTTATTG 59.590 52.381 15.35 0.00 0.00 1.90
536 546 1.006998 TGGATGCAGCCTTGGGTTATT 59.993 47.619 23.69 0.00 0.00 1.40
537 547 0.630673 TGGATGCAGCCTTGGGTTAT 59.369 50.000 23.69 0.00 0.00 1.89
538 548 0.323360 GTGGATGCAGCCTTGGGTTA 60.323 55.000 23.69 0.00 0.00 2.85
541 551 2.757099 GGTGGATGCAGCCTTGGG 60.757 66.667 23.69 0.00 0.00 4.12
558 568 1.730902 CGTCTGCTCGTGTCCACTG 60.731 63.158 0.00 0.00 0.00 3.66
564 574 1.293963 TAGCGTACGTCTGCTCGTGT 61.294 55.000 17.90 0.00 43.93 4.49
565 575 0.856490 GTAGCGTACGTCTGCTCGTG 60.856 60.000 17.90 0.00 43.93 4.35
593 635 0.810031 ATCCACATGCTAACGCGTCC 60.810 55.000 14.44 4.72 39.65 4.79
635 677 0.109226 GCGTCTGTCACCACCTAGTC 60.109 60.000 0.00 0.00 0.00 2.59
636 678 1.863662 CGCGTCTGTCACCACCTAGT 61.864 60.000 0.00 0.00 0.00 2.57
678 732 2.905996 GCTGGGGTCCATGTGGTGA 61.906 63.158 0.00 0.00 36.34 4.02
693 747 1.216710 GAGGTTGAGTCCTCCGCTG 59.783 63.158 1.70 0.00 45.84 5.18
780 839 2.968574 TGAATCTTAGCTAGGGGCAGAG 59.031 50.000 2.65 0.00 44.79 3.35
781 840 2.700897 GTGAATCTTAGCTAGGGGCAGA 59.299 50.000 2.65 0.00 44.79 4.26
783 842 1.768870 GGTGAATCTTAGCTAGGGGCA 59.231 52.381 2.65 0.00 44.79 5.36
786 845 3.964031 AGTGAGGTGAATCTTAGCTAGGG 59.036 47.826 2.65 0.00 0.00 3.53
787 846 5.452636 GGAAGTGAGGTGAATCTTAGCTAGG 60.453 48.000 0.00 0.00 0.00 3.02
806 866 3.864983 TTGCCGGGGAGAGGGAAGT 62.865 63.158 2.18 0.00 34.10 3.01
811 871 1.926426 AATCCTTTGCCGGGGAGAGG 61.926 60.000 17.82 17.82 34.89 3.69
820 880 1.803289 GGCAGACGAATCCTTTGCC 59.197 57.895 0.00 0.00 46.39 4.52
821 881 0.449388 CAGGCAGACGAATCCTTTGC 59.551 55.000 0.00 0.00 0.00 3.68
822 882 0.449388 GCAGGCAGACGAATCCTTTG 59.551 55.000 0.00 0.00 0.00 2.77
823 883 0.036732 TGCAGGCAGACGAATCCTTT 59.963 50.000 0.00 0.00 0.00 3.11
832 892 2.360475 GGGTCCTTGCAGGCAGAC 60.360 66.667 5.39 5.39 34.61 3.51
837 897 3.003173 TCGAGGGGTCCTTGCAGG 61.003 66.667 0.00 0.00 35.08 4.85
884 957 8.725148 AGCACTCAAAATAGTTACAAGATTCAG 58.275 33.333 0.00 0.00 0.00 3.02
938 1015 7.588143 ACTTCTGATTTCGTATTCAAGACTG 57.412 36.000 0.00 0.00 0.00 3.51
946 1028 7.657023 ACCCTACTACTTCTGATTTCGTATT 57.343 36.000 0.00 0.00 0.00 1.89
952 1034 5.958987 AGTGCTACCCTACTACTTCTGATTT 59.041 40.000 0.00 0.00 0.00 2.17
955 1037 4.587976 AGTGCTACCCTACTACTTCTGA 57.412 45.455 0.00 0.00 0.00 3.27
958 1040 6.514705 CGGATTAAGTGCTACCCTACTACTTC 60.515 46.154 0.00 0.00 33.93 3.01
960 1042 4.826183 CGGATTAAGTGCTACCCTACTACT 59.174 45.833 0.00 0.00 0.00 2.57
961 1043 4.558296 GCGGATTAAGTGCTACCCTACTAC 60.558 50.000 0.00 0.00 0.00 2.73
962 1044 3.571401 GCGGATTAAGTGCTACCCTACTA 59.429 47.826 0.00 0.00 0.00 1.82
963 1045 2.364647 GCGGATTAAGTGCTACCCTACT 59.635 50.000 0.00 0.00 0.00 2.57
964 1046 2.101917 TGCGGATTAAGTGCTACCCTAC 59.898 50.000 0.00 0.00 0.00 3.18
965 1047 2.390696 TGCGGATTAAGTGCTACCCTA 58.609 47.619 0.00 0.00 0.00 3.53
966 1048 1.200519 TGCGGATTAAGTGCTACCCT 58.799 50.000 0.00 0.00 0.00 4.34
967 1049 2.256117 ATGCGGATTAAGTGCTACCC 57.744 50.000 0.00 0.00 0.00 3.69
968 1050 3.248602 CAGAATGCGGATTAAGTGCTACC 59.751 47.826 0.71 0.00 0.00 3.18
969 1051 3.871594 ACAGAATGCGGATTAAGTGCTAC 59.128 43.478 0.71 0.00 42.53 3.58
970 1052 3.871006 CACAGAATGCGGATTAAGTGCTA 59.129 43.478 16.86 0.00 42.53 3.49
1179 1261 4.041815 AGAGGAAAACAGTAGGGGAGAAAC 59.958 45.833 0.00 0.00 0.00 2.78
1190 1278 1.543429 CCGGAAGCAGAGGAAAACAGT 60.543 52.381 0.00 0.00 0.00 3.55
1237 1325 6.068140 ACAATCCCCTGTTTAACCCCATATAA 60.068 38.462 0.00 0.00 0.00 0.98
1238 1326 5.437043 ACAATCCCCTGTTTAACCCCATATA 59.563 40.000 0.00 0.00 0.00 0.86
1239 1327 4.234223 ACAATCCCCTGTTTAACCCCATAT 59.766 41.667 0.00 0.00 0.00 1.78
1240 1328 3.598782 ACAATCCCCTGTTTAACCCCATA 59.401 43.478 0.00 0.00 0.00 2.74
1241 1329 2.385417 ACAATCCCCTGTTTAACCCCAT 59.615 45.455 0.00 0.00 0.00 4.00
1242 1330 1.790157 ACAATCCCCTGTTTAACCCCA 59.210 47.619 0.00 0.00 0.00 4.96
1243 1331 2.176045 CACAATCCCCTGTTTAACCCC 58.824 52.381 0.00 0.00 0.00 4.95
1244 1332 1.548719 GCACAATCCCCTGTTTAACCC 59.451 52.381 0.00 0.00 0.00 4.11
1269 1371 0.665670 CGGCTATCACTCTGCCATCG 60.666 60.000 0.00 0.00 46.39 3.84
1284 1386 1.416401 TCCTGAAGTTTCTTCACGGCT 59.584 47.619 7.92 0.00 0.00 5.52
1390 1492 0.040067 GTTTCGCTGCAGAACCCAAG 60.040 55.000 20.43 0.00 0.00 3.61
1458 1560 6.775142 ACTCATAGCAGATTAAGCTCTCAGTA 59.225 38.462 0.00 0.00 42.32 2.74
1533 1647 9.103861 GTTAAGGACTGAGATAGAAATCCAAAG 57.896 37.037 0.00 0.00 31.98 2.77
1538 1652 6.807789 ACCGTTAAGGACTGAGATAGAAATC 58.192 40.000 0.00 0.00 45.00 2.17
1547 1661 6.164176 AGAAATGTAACCGTTAAGGACTGAG 58.836 40.000 0.00 0.00 45.00 3.35
1561 1678 7.867403 TCAGCTCCAATTTGAAAGAAATGTAAC 59.133 33.333 0.00 0.00 0.00 2.50
1564 1683 6.409524 TCAGCTCCAATTTGAAAGAAATGT 57.590 33.333 0.00 0.00 0.00 2.71
1567 1686 8.735692 ATTTTTCAGCTCCAATTTGAAAGAAA 57.264 26.923 0.00 0.00 40.63 2.52
1568 1687 7.986320 TGATTTTTCAGCTCCAATTTGAAAGAA 59.014 29.630 0.00 2.85 40.63 2.52
1569 1688 7.439056 GTGATTTTTCAGCTCCAATTTGAAAGA 59.561 33.333 0.00 0.46 40.63 2.52
1570 1689 7.225145 TGTGATTTTTCAGCTCCAATTTGAAAG 59.775 33.333 0.00 0.00 40.63 2.62
1586 1709 7.623268 AAACAGCGTAAGAATGTGATTTTTC 57.377 32.000 0.00 0.00 38.56 2.29
1588 1711 9.988350 CTATAAACAGCGTAAGAATGTGATTTT 57.012 29.630 0.00 0.00 38.56 1.82
1627 1753 4.766891 ACATTGTGAGAAACTACATTGGGG 59.233 41.667 0.00 0.00 34.31 4.96
1638 1764 9.448438 AATACTGTAAGCATACATTGTGAGAAA 57.552 29.630 1.68 0.00 41.09 2.52
1712 1871 2.094762 AGCGTGTGTCCCAACTAATC 57.905 50.000 0.00 0.00 0.00 1.75
2014 2213 7.377398 CCACTGGATCACATTAACATCAAAAA 58.623 34.615 0.00 0.00 0.00 1.94
2236 2440 9.848172 CTTAGTGACAATAAACAAACAAAATGC 57.152 29.630 0.00 0.00 0.00 3.56
2329 2542 2.611292 GAGGCTTTCATGATCCAACGAG 59.389 50.000 0.00 0.00 0.00 4.18
2552 2766 6.538381 TCAAGCTTCCCAAAAGAAAATTGAAC 59.462 34.615 0.00 0.00 32.01 3.18
2555 2769 6.707161 TGATCAAGCTTCCCAAAAGAAAATTG 59.293 34.615 0.00 0.00 0.00 2.32
2557 2775 6.042437 AGTGATCAAGCTTCCCAAAAGAAAAT 59.958 34.615 0.00 0.00 0.00 1.82
2563 2781 4.473444 AGAAGTGATCAAGCTTCCCAAAA 58.527 39.130 17.90 0.00 41.29 2.44
2567 2785 5.221322 ACAAAAAGAAGTGATCAAGCTTCCC 60.221 40.000 17.90 1.13 41.29 3.97
2568 2786 5.836347 ACAAAAAGAAGTGATCAAGCTTCC 58.164 37.500 17.90 5.43 41.29 3.46
2573 2791 9.612620 GTTACCATACAAAAAGAAGTGATCAAG 57.387 33.333 0.00 0.00 0.00 3.02
2585 2803 8.184304 ACCAGCATTTAGTTACCATACAAAAA 57.816 30.769 0.00 0.00 0.00 1.94
2590 2808 9.038803 GTAGTTACCAGCATTTAGTTACCATAC 57.961 37.037 0.00 0.00 0.00 2.39
2609 2827 7.147707 ACCATCTATGAGGAAAGTGGTAGTTAC 60.148 40.741 0.00 0.00 36.77 2.50
2615 2833 4.409247 GGTACCATCTATGAGGAAAGTGGT 59.591 45.833 7.15 0.00 41.10 4.16
2627 2845 5.782331 ACATCTGTGCATAGGTACCATCTAT 59.218 40.000 15.94 0.00 0.00 1.98
2636 2854 6.500684 CACTTAAAACATCTGTGCATAGGT 57.499 37.500 10.87 0.00 0.00 3.08
2647 2865 4.683781 TGCAATTTCGGCACTTAAAACATC 59.316 37.500 0.00 0.00 36.11 3.06
2660 2878 5.824429 ACATGAATATGAGTGCAATTTCGG 58.176 37.500 0.00 0.00 37.73 4.30
2703 2921 9.368674 TGCCAGAAAATGTAAAACATATGAATG 57.631 29.630 10.38 0.00 37.97 2.67
2705 2923 9.585099 GATGCCAGAAAATGTAAAACATATGAA 57.415 29.630 10.38 0.00 37.97 2.57
2706 2924 8.196771 GGATGCCAGAAAATGTAAAACATATGA 58.803 33.333 10.38 0.00 37.97 2.15
2707 2925 7.167968 CGGATGCCAGAAAATGTAAAACATATG 59.832 37.037 0.00 0.00 37.97 1.78
2708 2926 7.068103 TCGGATGCCAGAAAATGTAAAACATAT 59.932 33.333 0.00 0.00 37.97 1.78
2709 2927 6.375736 TCGGATGCCAGAAAATGTAAAACATA 59.624 34.615 0.00 0.00 37.97 2.29
2710 2928 5.184864 TCGGATGCCAGAAAATGTAAAACAT 59.815 36.000 0.00 0.00 41.31 2.71
2711 2929 4.520874 TCGGATGCCAGAAAATGTAAAACA 59.479 37.500 0.00 0.00 0.00 2.83
2712 2930 5.054390 TCGGATGCCAGAAAATGTAAAAC 57.946 39.130 0.00 0.00 0.00 2.43
2713 2931 5.713792 TTCGGATGCCAGAAAATGTAAAA 57.286 34.783 0.00 0.00 0.00 1.52
2714 2932 5.713792 TTTCGGATGCCAGAAAATGTAAA 57.286 34.783 0.00 0.00 33.93 2.01
2715 2933 5.713792 TTTTCGGATGCCAGAAAATGTAA 57.286 34.783 0.00 0.00 40.22 2.41
2720 2938 2.958213 GCATTTTCGGATGCCAGAAAA 58.042 42.857 13.99 13.99 45.16 2.29
2721 2939 2.652941 GCATTTTCGGATGCCAGAAA 57.347 45.000 7.74 0.00 45.16 2.52
2727 2945 8.722567 CATGAATATGAGTGCATTTTCGGATGC 61.723 40.741 10.92 10.92 42.07 3.91
2728 2946 6.063640 TGAATATGAGTGCATTTTCGGATG 57.936 37.500 0.00 0.00 42.07 3.51
2729 2947 6.263842 ACATGAATATGAGTGCATTTTCGGAT 59.736 34.615 0.00 0.00 42.07 4.18
2730 2948 5.589855 ACATGAATATGAGTGCATTTTCGGA 59.410 36.000 0.00 0.00 42.07 4.55
2731 2949 5.824429 ACATGAATATGAGTGCATTTTCGG 58.176 37.500 0.00 0.00 42.07 4.30
2734 2952 9.850628 GCATATACATGAATATGAGTGCATTTT 57.149 29.630 0.00 0.00 40.73 1.82
2735 2953 9.016438 TGCATATACATGAATATGAGTGCATTT 57.984 29.630 0.00 0.00 40.73 2.32
2736 2954 8.570068 TGCATATACATGAATATGAGTGCATT 57.430 30.769 0.00 0.00 40.73 3.56
2737 2955 7.827729 ACTGCATATACATGAATATGAGTGCAT 59.172 33.333 0.00 0.00 40.73 3.96
2738 2956 7.163441 ACTGCATATACATGAATATGAGTGCA 58.837 34.615 0.00 6.28 40.73 4.57
2739 2957 7.606858 ACTGCATATACATGAATATGAGTGC 57.393 36.000 0.00 2.17 40.73 4.40
2789 3007 6.497437 TCGAATATGTTGATGCCAGAAAATG 58.503 36.000 0.00 0.00 0.00 2.32
2793 3011 6.698008 AAATCGAATATGTTGATGCCAGAA 57.302 33.333 0.00 0.00 0.00 3.02
2838 3056 9.634163 TGTGTATGTGTACTACTTTGTATTCAG 57.366 33.333 0.00 0.00 0.00 3.02
2840 3058 9.635520 AGTGTGTATGTGTACTACTTTGTATTC 57.364 33.333 0.00 0.00 30.28 1.75
2841 3059 9.991906 AAGTGTGTATGTGTACTACTTTGTATT 57.008 29.630 0.00 0.00 36.47 1.89
2844 3062 7.494211 TCAAGTGTGTATGTGTACTACTTTGT 58.506 34.615 0.00 0.00 37.10 2.83
2845 3063 7.940178 TCAAGTGTGTATGTGTACTACTTTG 57.060 36.000 0.00 0.00 37.10 2.77
2846 3064 7.982919 TGTTCAAGTGTGTATGTGTACTACTTT 59.017 33.333 0.00 0.00 37.10 2.66
2848 3066 7.046292 TGTTCAAGTGTGTATGTGTACTACT 57.954 36.000 0.00 0.00 33.45 2.57
2851 3069 7.801716 AAATGTTCAAGTGTGTATGTGTACT 57.198 32.000 0.00 0.00 0.00 2.73
2852 3070 9.755064 GATAAATGTTCAAGTGTGTATGTGTAC 57.245 33.333 0.00 0.00 0.00 2.90
2853 3071 9.495572 TGATAAATGTTCAAGTGTGTATGTGTA 57.504 29.630 0.00 0.00 0.00 2.90
2854 3072 8.389779 TGATAAATGTTCAAGTGTGTATGTGT 57.610 30.769 0.00 0.00 0.00 3.72
2855 3073 9.333497 CTTGATAAATGTTCAAGTGTGTATGTG 57.667 33.333 5.48 0.00 43.23 3.21
2856 3074 9.283768 TCTTGATAAATGTTCAAGTGTGTATGT 57.716 29.630 11.84 0.00 46.54 2.29
2862 3080 7.505585 TCCCTTTCTTGATAAATGTTCAAGTGT 59.494 33.333 11.84 0.00 46.54 3.55
2864 3082 7.725844 ACTCCCTTTCTTGATAAATGTTCAAGT 59.274 33.333 11.84 0.00 46.54 3.16
2866 3084 7.505585 ACACTCCCTTTCTTGATAAATGTTCAA 59.494 33.333 0.00 0.00 0.00 2.69
2867 3085 7.004086 ACACTCCCTTTCTTGATAAATGTTCA 58.996 34.615 0.00 0.00 0.00 3.18
2868 3086 7.454260 ACACTCCCTTTCTTGATAAATGTTC 57.546 36.000 0.00 0.00 0.00 3.18
2870 3088 8.109634 ACATACACTCCCTTTCTTGATAAATGT 58.890 33.333 0.00 0.00 0.00 2.71
2871 3089 8.511604 ACATACACTCCCTTTCTTGATAAATG 57.488 34.615 0.00 0.00 0.00 2.32
2875 3093 9.832445 GAAATACATACACTCCCTTTCTTGATA 57.168 33.333 0.00 0.00 0.00 2.15
2876 3094 7.775561 GGAAATACATACACTCCCTTTCTTGAT 59.224 37.037 0.00 0.00 0.00 2.57
2877 3095 7.110155 GGAAATACATACACTCCCTTTCTTGA 58.890 38.462 0.00 0.00 0.00 3.02
2878 3096 6.884295 TGGAAATACATACACTCCCTTTCTTG 59.116 38.462 0.00 0.00 0.00 3.02
2879 3097 7.027874 TGGAAATACATACACTCCCTTTCTT 57.972 36.000 0.00 0.00 0.00 2.52
2880 3098 6.215636 ACTGGAAATACATACACTCCCTTTCT 59.784 38.462 0.00 0.00 0.00 2.52
2881 3099 6.415573 ACTGGAAATACATACACTCCCTTTC 58.584 40.000 0.00 0.00 0.00 2.62
2882 3100 6.388619 ACTGGAAATACATACACTCCCTTT 57.611 37.500 0.00 0.00 0.00 3.11
2883 3101 6.388619 AACTGGAAATACATACACTCCCTT 57.611 37.500 0.00 0.00 0.00 3.95
2884 3102 6.012858 TCAAACTGGAAATACATACACTCCCT 60.013 38.462 0.00 0.00 0.00 4.20
2885 3103 6.177610 TCAAACTGGAAATACATACACTCCC 58.822 40.000 0.00 0.00 0.00 4.30
2886 3104 6.879458 ACTCAAACTGGAAATACATACACTCC 59.121 38.462 0.00 0.00 0.00 3.85
2887 3105 7.387948 ACACTCAAACTGGAAATACATACACTC 59.612 37.037 0.00 0.00 0.00 3.51
2888 3106 7.173218 CACACTCAAACTGGAAATACATACACT 59.827 37.037 0.00 0.00 0.00 3.55
2889 3107 7.298122 CACACTCAAACTGGAAATACATACAC 58.702 38.462 0.00 0.00 0.00 2.90
2890 3108 6.429692 CCACACTCAAACTGGAAATACATACA 59.570 38.462 0.00 0.00 0.00 2.29
2891 3109 6.653320 TCCACACTCAAACTGGAAATACATAC 59.347 38.462 0.00 0.00 30.81 2.39
2892 3110 6.774673 TCCACACTCAAACTGGAAATACATA 58.225 36.000 0.00 0.00 30.81 2.29
2893 3111 5.630121 TCCACACTCAAACTGGAAATACAT 58.370 37.500 0.00 0.00 30.81 2.29
2894 3112 5.042463 TCCACACTCAAACTGGAAATACA 57.958 39.130 0.00 0.00 30.81 2.29
2895 3113 6.575162 ATTCCACACTCAAACTGGAAATAC 57.425 37.500 2.60 0.00 45.14 1.89
2896 3114 7.888021 ACATATTCCACACTCAAACTGGAAATA 59.112 33.333 2.60 0.00 45.14 1.40
2897 3115 6.721208 ACATATTCCACACTCAAACTGGAAAT 59.279 34.615 2.60 0.00 45.14 2.17
2898 3116 6.068010 ACATATTCCACACTCAAACTGGAAA 58.932 36.000 2.60 0.00 45.14 3.13
2899 3117 5.630121 ACATATTCCACACTCAAACTGGAA 58.370 37.500 0.98 0.98 45.87 3.53
2900 3118 5.241403 ACATATTCCACACTCAAACTGGA 57.759 39.130 0.00 0.00 31.94 3.86
2901 3119 5.707298 AGAACATATTCCACACTCAAACTGG 59.293 40.000 0.00 0.00 35.18 4.00
2902 3120 6.348786 CCAGAACATATTCCACACTCAAACTG 60.349 42.308 0.00 0.00 35.18 3.16
2903 3121 5.707298 CCAGAACATATTCCACACTCAAACT 59.293 40.000 0.00 0.00 35.18 2.66
2904 3122 5.705441 TCCAGAACATATTCCACACTCAAAC 59.295 40.000 0.00 0.00 35.18 2.93
2905 3123 5.875224 TCCAGAACATATTCCACACTCAAA 58.125 37.500 0.00 0.00 35.18 2.69
2906 3124 5.497464 TCCAGAACATATTCCACACTCAA 57.503 39.130 0.00 0.00 35.18 3.02
2907 3125 5.045651 ACATCCAGAACATATTCCACACTCA 60.046 40.000 0.00 0.00 35.18 3.41
2908 3126 5.431765 ACATCCAGAACATATTCCACACTC 58.568 41.667 0.00 0.00 35.18 3.51
2909 3127 5.441718 ACATCCAGAACATATTCCACACT 57.558 39.130 0.00 0.00 35.18 3.55
2910 3128 7.624360 TTAACATCCAGAACATATTCCACAC 57.376 36.000 0.00 0.00 35.18 3.82
2911 3129 8.821686 ATTTAACATCCAGAACATATTCCACA 57.178 30.769 0.00 0.00 35.18 4.17
2916 3134 9.382275 GGCAAAATTTAACATCCAGAACATATT 57.618 29.630 0.00 0.00 0.00 1.28
2917 3135 8.761689 AGGCAAAATTTAACATCCAGAACATAT 58.238 29.630 0.00 0.00 0.00 1.78
2918 3136 8.133024 AGGCAAAATTTAACATCCAGAACATA 57.867 30.769 0.00 0.00 0.00 2.29
2919 3137 7.008021 AGGCAAAATTTAACATCCAGAACAT 57.992 32.000 0.00 0.00 0.00 2.71
2920 3138 6.418057 AGGCAAAATTTAACATCCAGAACA 57.582 33.333 0.00 0.00 0.00 3.18
2937 3155 9.853555 CAGAACACATGTTTTATAATAGGCAAA 57.146 29.630 0.00 0.00 38.56 3.68
2938 3156 8.465999 CCAGAACACATGTTTTATAATAGGCAA 58.534 33.333 0.00 0.00 38.56 4.52
2939 3157 7.831690 TCCAGAACACATGTTTTATAATAGGCA 59.168 33.333 0.00 0.00 38.56 4.75
2940 3158 8.220755 TCCAGAACACATGTTTTATAATAGGC 57.779 34.615 0.00 0.00 38.56 3.93
2945 3163 9.173021 CCTACATCCAGAACACATGTTTTATAA 57.827 33.333 0.00 0.00 38.56 0.98
2946 3164 8.544622 TCCTACATCCAGAACACATGTTTTATA 58.455 33.333 0.00 0.00 38.56 0.98
2947 3165 7.402054 TCCTACATCCAGAACACATGTTTTAT 58.598 34.615 0.00 0.00 38.56 1.40
2948 3166 6.774673 TCCTACATCCAGAACACATGTTTTA 58.225 36.000 0.00 0.00 38.56 1.52
2949 3167 5.630121 TCCTACATCCAGAACACATGTTTT 58.370 37.500 0.00 0.00 38.56 2.43
2950 3168 5.241403 TCCTACATCCAGAACACATGTTT 57.759 39.130 0.00 0.00 38.56 2.83
2951 3169 4.908601 TCCTACATCCAGAACACATGTT 57.091 40.909 0.00 0.00 41.64 2.71
2952 3170 4.908601 TTCCTACATCCAGAACACATGT 57.091 40.909 0.00 0.00 35.00 3.21
2953 3171 5.678583 AGATTCCTACATCCAGAACACATG 58.321 41.667 0.00 0.00 0.00 3.21
2954 3172 5.965033 AGATTCCTACATCCAGAACACAT 57.035 39.130 0.00 0.00 0.00 3.21
2955 3173 5.762179 AAGATTCCTACATCCAGAACACA 57.238 39.130 0.00 0.00 0.00 3.72
2956 3174 6.173339 TCAAAGATTCCTACATCCAGAACAC 58.827 40.000 0.00 0.00 0.00 3.32
3234 3469 8.324306 AGAATCATTTGAAATGTCCTGAGTAGA 58.676 33.333 16.62 0.00 0.00 2.59
3235 3470 8.503458 AGAATCATTTGAAATGTCCTGAGTAG 57.497 34.615 16.62 0.00 0.00 2.57
3236 3471 9.958180 TTAGAATCATTTGAAATGTCCTGAGTA 57.042 29.630 16.62 0.00 0.00 2.59
3237 3472 8.734386 GTTAGAATCATTTGAAATGTCCTGAGT 58.266 33.333 16.62 0.00 0.00 3.41
3238 3473 8.954350 AGTTAGAATCATTTGAAATGTCCTGAG 58.046 33.333 16.62 0.00 0.00 3.35
3239 3474 8.868522 AGTTAGAATCATTTGAAATGTCCTGA 57.131 30.769 16.62 7.33 0.00 3.86
3240 3475 9.350357 CAAGTTAGAATCATTTGAAATGTCCTG 57.650 33.333 16.62 0.00 0.00 3.86
3241 3476 8.031277 GCAAGTTAGAATCATTTGAAATGTCCT 58.969 33.333 16.62 13.63 0.00 3.85
3242 3477 8.031277 AGCAAGTTAGAATCATTTGAAATGTCC 58.969 33.333 16.62 7.96 0.00 4.02
3243 3478 8.976986 AGCAAGTTAGAATCATTTGAAATGTC 57.023 30.769 16.62 8.75 0.00 3.06
3290 3525 0.453390 GTAGTTGTAGACGGACGGGG 59.547 60.000 0.00 0.00 0.00 5.73
3383 3618 7.526142 AGGGTCTTCTTTCCAAAATAAAGTC 57.474 36.000 0.00 0.00 35.79 3.01
3390 3625 6.367374 AAACAAAGGGTCTTCTTTCCAAAA 57.633 33.333 0.00 0.00 35.04 2.44
3479 3715 6.369065 GCTGTTGCATCTAAAGTACAGTAGTT 59.631 38.462 11.41 0.00 39.41 2.24
3480 3716 5.869888 GCTGTTGCATCTAAAGTACAGTAGT 59.130 40.000 11.41 0.00 39.41 2.73
3482 3718 5.789521 TGCTGTTGCATCTAAAGTACAGTA 58.210 37.500 11.41 5.42 45.31 2.74
3510 3746 5.755375 ACTGACATAAACAGAGACAACAGTG 59.245 40.000 0.00 0.00 38.55 3.66
3512 3748 6.851222 AACTGACATAAACAGAGACAACAG 57.149 37.500 0.00 0.00 38.55 3.16
3557 3793 6.345096 AGTAGTTAACAAATTTGCATGCCT 57.655 33.333 18.12 9.95 0.00 4.75
3558 3794 5.576774 GGAGTAGTTAACAAATTTGCATGCC 59.423 40.000 18.12 3.09 0.00 4.40
3605 4176 9.674068 AAATAGATTCTTTTACAGAGGGTCTTC 57.326 33.333 0.00 0.00 31.12 2.87
3606 4177 9.674068 GAAATAGATTCTTTTACAGAGGGTCTT 57.326 33.333 0.00 0.00 35.04 3.01
3607 4178 9.052365 AGAAATAGATTCTTTTACAGAGGGTCT 57.948 33.333 0.00 0.00 46.39 3.85
3622 4193 5.925969 GCTCTGGTGCTAGAGAAATAGATTC 59.074 44.000 15.31 0.00 45.61 2.52
3623 4194 5.365025 TGCTCTGGTGCTAGAGAAATAGATT 59.635 40.000 15.31 0.00 45.61 2.40
3624 4195 4.898265 TGCTCTGGTGCTAGAGAAATAGAT 59.102 41.667 15.31 0.00 45.61 1.98
3625 4196 4.098654 GTGCTCTGGTGCTAGAGAAATAGA 59.901 45.833 15.31 0.00 45.61 1.98
3626 4197 4.142071 TGTGCTCTGGTGCTAGAGAAATAG 60.142 45.833 15.31 0.00 45.61 1.73
3627 4198 3.769300 TGTGCTCTGGTGCTAGAGAAATA 59.231 43.478 15.31 0.33 45.61 1.40
3628 4199 2.568956 TGTGCTCTGGTGCTAGAGAAAT 59.431 45.455 15.31 0.00 45.61 2.17
3629 4200 1.970640 TGTGCTCTGGTGCTAGAGAAA 59.029 47.619 15.31 1.47 45.61 2.52
3630 4201 1.632589 TGTGCTCTGGTGCTAGAGAA 58.367 50.000 15.31 3.09 45.61 2.87
3631 4202 1.857965 ATGTGCTCTGGTGCTAGAGA 58.142 50.000 15.31 0.00 45.61 3.10
3632 4203 2.687700 AATGTGCTCTGGTGCTAGAG 57.312 50.000 8.02 8.02 45.54 2.43
3634 4205 2.676839 CAGAAATGTGCTCTGGTGCTAG 59.323 50.000 0.00 0.00 37.29 3.42
3636 4207 1.202855 ACAGAAATGTGCTCTGGTGCT 60.203 47.619 5.07 0.00 43.88 4.40
3637 4208 1.242076 ACAGAAATGTGCTCTGGTGC 58.758 50.000 5.07 0.00 43.88 5.01
3638 4209 3.438087 CCTAACAGAAATGTGCTCTGGTG 59.562 47.826 0.92 0.00 41.03 4.17
3639 4210 3.679389 CCTAACAGAAATGTGCTCTGGT 58.321 45.455 5.07 0.69 43.88 4.00
3640 4211 2.421424 GCCTAACAGAAATGTGCTCTGG 59.579 50.000 5.07 0.00 43.88 3.86
3641 4212 2.421424 GGCCTAACAGAAATGTGCTCTG 59.579 50.000 0.00 0.00 44.90 3.35
3706 4287 6.606768 GTTCTCTTAAAAATCTGCTCTGGTG 58.393 40.000 0.00 0.00 0.00 4.17
3716 4297 2.096980 CCGGGCCGTTCTCTTAAAAATC 59.903 50.000 26.32 0.00 0.00 2.17
3750 4331 1.553417 GGCCCTAGATCAGCCTGGATA 60.553 57.143 0.00 0.00 43.62 2.59
3759 4340 1.480954 GAAACGTGAGGCCCTAGATCA 59.519 52.381 0.00 0.00 0.00 2.92
3765 4346 0.834687 TGGTAGAAACGTGAGGCCCT 60.835 55.000 0.00 0.00 0.00 5.19
3794 4375 9.403583 TCTCGTAATAATTCATTTAGGGCTTTT 57.596 29.630 0.00 0.00 0.00 2.27
3890 4471 7.041098 CCACCATAGAGAAAATGGCTATGTTAC 60.041 40.741 0.00 0.00 46.63 2.50
3891 4472 6.998074 CCACCATAGAGAAAATGGCTATGTTA 59.002 38.462 0.00 0.00 46.63 2.41
3948 4548 0.667487 CTAGACGCATGGGCATACCG 60.667 60.000 10.10 0.00 44.64 4.02
3962 4563 4.245660 TCTGCACATAACTGTTGCTAGAC 58.754 43.478 2.69 0.00 31.62 2.59
4065 4669 9.040939 GTTGTTTTTCCAGCAAGTTGTTATAAT 57.959 29.630 4.48 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.