Multiple sequence alignment - TraesCS7D01G524900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G524900 chr7D 100.000 5048 0 0 1 5048 620923731 620928778 0.000000e+00 9323.0
1 TraesCS7D01G524900 chr7D 88.073 109 11 2 2134 2241 620925971 620925864 1.480000e-25 128.0
2 TraesCS7D01G524900 chr7D 80.198 101 19 1 4776 4876 120590934 120591033 1.950000e-09 75.0
3 TraesCS7D01G524900 chr7B 94.971 2267 99 10 2789 5048 719077942 719080200 0.000000e+00 3541.0
4 TraesCS7D01G524900 chr7B 91.364 1100 68 13 769 1860 719075725 719076805 0.000000e+00 1480.0
5 TraesCS7D01G524900 chr7B 82.622 328 41 9 434 755 719075424 719075741 4.980000e-70 276.0
6 TraesCS7D01G524900 chr7B 85.091 275 31 9 2523 2791 719077602 719077872 6.440000e-69 272.0
7 TraesCS7D01G524900 chr7B 91.919 99 6 2 2144 2240 33530729 33530827 2.450000e-28 137.0
8 TraesCS7D01G524900 chr7B 93.548 93 3 2 2144 2235 97873442 97873532 8.820000e-28 135.0
9 TraesCS7D01G524900 chr7A 89.370 1778 138 35 2323 4058 716257294 716255526 0.000000e+00 2189.0
10 TraesCS7D01G524900 chr7A 91.486 1104 55 18 769 1859 716258987 716257910 0.000000e+00 1482.0
11 TraesCS7D01G524900 chr7A 86.934 773 60 14 1 755 716259720 716258971 0.000000e+00 830.0
12 TraesCS7D01G524900 chr7A 82.051 78 11 2 1047 1121 554481101 554481024 4.220000e-06 63.9
13 TraesCS7D01G524900 chr6B 83.266 992 157 6 2837 3824 700615885 700616871 0.000000e+00 904.0
14 TraesCS7D01G524900 chr6B 92.989 271 19 0 1227 1497 700614805 700615075 3.660000e-106 396.0
15 TraesCS7D01G524900 chr6B 90.751 173 16 0 1697 1869 700615139 700615311 1.090000e-56 231.0
16 TraesCS7D01G524900 chr6B 91.919 99 5 2 2144 2241 712570169 712570265 8.820000e-28 135.0
17 TraesCS7D01G524900 chr6B 84.466 103 16 0 1021 1123 700614061 700614163 8.940000e-18 102.0
18 TraesCS7D01G524900 chr6A 81.117 895 139 15 2944 3824 606077682 606078560 0.000000e+00 689.0
19 TraesCS7D01G524900 chr6A 88.968 281 23 1 1227 1507 606076087 606076359 1.740000e-89 340.0
20 TraesCS7D01G524900 chr6A 89.091 165 18 0 1705 1869 606076352 606076516 6.620000e-49 206.0
21 TraesCS7D01G524900 chr4B 84.585 253 39 0 3391 3643 537368206 537367954 8.390000e-63 252.0
22 TraesCS7D01G524900 chr4B 81.423 253 47 0 3391 3643 664194878 664194626 1.840000e-49 207.0
23 TraesCS7D01G524900 chr4B 76.526 426 71 19 1060 1484 537371917 537371520 6.620000e-49 206.0
24 TraesCS7D01G524900 chr4B 85.235 149 22 0 3245 3393 537368439 537368291 2.430000e-33 154.0
25 TraesCS7D01G524900 chr4B 87.879 66 8 0 1795 1860 664198633 664198568 1.510000e-10 78.7
26 TraesCS7D01G524900 chr4D 86.222 225 31 0 3419 3643 435659386 435659162 1.400000e-60 244.0
27 TraesCS7D01G524900 chr4D 80.545 257 42 5 1229 1484 435661171 435660922 1.850000e-44 191.0
28 TraesCS7D01G524900 chr4D 80.078 256 45 3 1229 1484 506935024 506935273 8.630000e-43 185.0
29 TraesCS7D01G524900 chr4D 86.667 135 18 0 3245 3379 435659688 435659554 3.150000e-32 150.0
30 TraesCS7D01G524900 chr4D 90.909 99 8 1 2144 2241 362785348 362785446 1.140000e-26 132.0
31 TraesCS7D01G524900 chr4D 86.842 76 7 2 4779 4853 169598340 169598267 1.160000e-11 82.4
32 TraesCS7D01G524900 chr5A 82.213 253 45 0 3391 3643 703384690 703384942 8.510000e-53 219.0
33 TraesCS7D01G524900 chr5A 78.113 265 46 11 119 377 443730135 443729877 1.880000e-34 158.0
34 TraesCS7D01G524900 chr3D 82.895 228 33 6 119 343 344487 344711 3.080000e-47 200.0
35 TraesCS7D01G524900 chr4A 80.545 257 42 5 1229 1484 32116609 32116858 1.850000e-44 191.0
36 TraesCS7D01G524900 chr4A 81.172 239 29 8 3405 3643 32118795 32119017 1.440000e-40 178.0
37 TraesCS7D01G524900 chr2D 93.939 99 4 2 2144 2240 55399270 55399172 1.130000e-31 148.0
38 TraesCS7D01G524900 chr1B 93.750 96 5 1 2146 2240 263086536 263086631 5.270000e-30 143.0
39 TraesCS7D01G524900 chr1B 84.536 97 15 0 4772 4868 12587335 12587431 4.160000e-16 97.1
40 TraesCS7D01G524900 chr6D 92.233 103 2 3 2144 2241 452806721 452806822 1.890000e-29 141.0
41 TraesCS7D01G524900 chr6D 84.874 119 17 1 4772 4890 15804615 15804498 8.880000e-23 119.0
42 TraesCS7D01G524900 chr2B 90.816 98 8 1 2144 2240 332407663 332407760 4.100000e-26 130.0
43 TraesCS7D01G524900 chrUn 85.000 80 10 2 4776 4854 320583519 320583597 4.190000e-11 80.5
44 TraesCS7D01G524900 chrUn 85.000 80 10 2 4776 4854 472524650 472524728 4.190000e-11 80.5
45 TraesCS7D01G524900 chr3B 80.198 101 17 3 4779 4878 784895598 784895696 7.010000e-09 73.1
46 TraesCS7D01G524900 chr3B 80.198 101 17 3 4779 4878 786206820 786206722 7.010000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G524900 chr7D 620923731 620928778 5047 False 9323.000000 9323 100.000000 1 5048 1 chr7D.!!$F2 5047
1 TraesCS7D01G524900 chr7B 719075424 719080200 4776 False 1392.250000 3541 88.512000 434 5048 4 chr7B.!!$F3 4614
2 TraesCS7D01G524900 chr7A 716255526 716259720 4194 True 1500.333333 2189 89.263333 1 4058 3 chr7A.!!$R2 4057
3 TraesCS7D01G524900 chr6B 700614061 700616871 2810 False 408.250000 904 87.868000 1021 3824 4 chr6B.!!$F2 2803
4 TraesCS7D01G524900 chr6A 606076087 606078560 2473 False 411.666667 689 86.392000 1227 3824 3 chr6A.!!$F1 2597
5 TraesCS7D01G524900 chr4B 537367954 537371917 3963 True 204.000000 252 82.115333 1060 3643 3 chr4B.!!$R1 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 739 0.187361 AAGGCCCAAGGTTTGTGCTA 59.813 50.000 0.00 0.00 34.31 3.49 F
2274 3645 0.247736 GTCTCCACGAGTGCCTGAAT 59.752 55.000 0.00 0.00 0.00 2.57 F
2672 4184 1.068741 CCGGTTAGGCCTAGTGCTAAG 59.931 57.143 13.36 1.98 40.92 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2651 4162 0.259647 TAGCACTAGGCCTAACCGGA 59.740 55.000 14.85 0.00 46.50 5.14 R
3140 5873 1.134310 ACCTTGTCGTCCTCCGTTTTT 60.134 47.619 0.00 0.00 37.94 1.94 R
4531 8608 1.187271 CGATTATTCGTCGAACTGCCG 59.813 52.381 10.39 8.33 41.40 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.126726 TGTGTTGAAAAATGAACAAAACTGG 57.873 32.000 0.00 0.00 33.96 4.00
84 85 6.446781 ACCATTCTTTGTCATAGATGCAAG 57.553 37.500 0.00 0.00 0.00 4.01
124 125 7.093322 AGTGAATTATGTTCTGCTTTCATCC 57.907 36.000 0.00 0.00 0.00 3.51
125 126 5.967674 GTGAATTATGTTCTGCTTTCATCCG 59.032 40.000 0.00 0.00 0.00 4.18
153 154 0.450583 CATCACTGCAGCATGTGGAC 59.549 55.000 15.27 0.00 39.31 4.02
155 156 1.962822 CACTGCAGCATGTGGACGT 60.963 57.895 15.27 0.00 39.31 4.34
175 176 2.020131 CTTGCGCTTATGGCCTCTG 58.980 57.895 9.73 0.00 37.74 3.35
202 203 1.009829 CCGCCTAGAATCAGTTGTGC 58.990 55.000 0.00 0.00 0.00 4.57
205 206 2.012673 GCCTAGAATCAGTTGTGCAGG 58.987 52.381 0.00 0.00 0.00 4.85
208 209 2.664402 AGAATCAGTTGTGCAGGGTT 57.336 45.000 0.00 0.00 0.00 4.11
216 217 6.079424 TCAGTTGTGCAGGGTTTATTTAAC 57.921 37.500 0.00 0.00 35.94 2.01
217 218 5.594725 TCAGTTGTGCAGGGTTTATTTAACA 59.405 36.000 0.00 0.00 38.55 2.41
223 224 6.758886 TGTGCAGGGTTTATTTAACAAGTTTG 59.241 34.615 0.00 0.00 38.55 2.93
227 228 6.423604 CAGGGTTTATTTAACAAGTTTGGCTG 59.576 38.462 0.00 0.00 38.55 4.85
229 230 6.285224 GGTTTATTTAACAAGTTTGGCTGGT 58.715 36.000 0.00 0.00 38.55 4.00
230 231 6.201997 GGTTTATTTAACAAGTTTGGCTGGTG 59.798 38.462 0.00 0.00 38.55 4.17
246 247 1.476891 TGGTGAGCCACTCGTAGAATC 59.523 52.381 5.48 0.00 40.46 2.52
278 279 3.421826 GCTATGTAATTGCGGATTCGACG 60.422 47.826 0.00 0.00 34.98 5.12
288 289 1.017701 GGATTCGACGGGTTGTGGTC 61.018 60.000 0.00 0.00 0.00 4.02
294 295 1.768112 GACGGGTTGTGGTCGTGTTG 61.768 60.000 0.00 0.00 37.25 3.33
295 296 2.719354 GGGTTGTGGTCGTGTTGC 59.281 61.111 0.00 0.00 0.00 4.17
336 338 6.951643 ACAAGTTTAAACTCGGTGATGTAAC 58.048 36.000 20.78 0.00 38.57 2.50
346 348 4.888917 TCGGTGATGTAACTTGATTCACA 58.111 39.130 0.00 0.00 38.71 3.58
380 382 1.470098 GTTGTGTGCATCCTGTGATCC 59.530 52.381 0.00 0.00 0.00 3.36
384 386 1.065926 TGTGCATCCTGTGATCCAGAC 60.066 52.381 11.48 3.90 44.49 3.51
397 399 4.776322 CAGACGCCGGGGCAATCA 62.776 66.667 19.97 0.00 42.06 2.57
398 400 3.797353 AGACGCCGGGGCAATCAT 61.797 61.111 19.97 0.00 42.06 2.45
400 402 4.108299 ACGCCGGGGCAATCATCA 62.108 61.111 19.97 0.00 42.06 3.07
403 405 1.364901 GCCGGGGCAATCATCATTG 59.635 57.895 2.18 0.00 42.26 2.82
404 406 1.394266 GCCGGGGCAATCATCATTGT 61.394 55.000 2.18 0.00 41.51 2.71
405 407 0.670162 CCGGGGCAATCATCATTGTC 59.330 55.000 0.00 0.00 43.00 3.18
409 411 3.181473 CGGGGCAATCATCATTGTCAAAT 60.181 43.478 0.00 0.00 45.18 2.32
410 412 4.374399 GGGGCAATCATCATTGTCAAATC 58.626 43.478 0.00 0.00 45.18 2.17
411 413 4.100498 GGGGCAATCATCATTGTCAAATCT 59.900 41.667 0.00 0.00 45.18 2.40
412 414 5.302568 GGGGCAATCATCATTGTCAAATCTA 59.697 40.000 0.00 0.00 45.18 1.98
413 415 6.183360 GGGGCAATCATCATTGTCAAATCTAA 60.183 38.462 0.00 0.00 45.18 2.10
414 416 7.439381 GGGCAATCATCATTGTCAAATCTAAT 58.561 34.615 0.00 0.00 45.18 1.73
477 494 6.385649 TCTTGTGTTTATGTCAAAGTTCCC 57.614 37.500 0.00 0.00 0.00 3.97
586 605 7.913297 CGGAAAAAGACTTGACAATGAAAGTTA 59.087 33.333 7.32 0.00 36.77 2.24
592 611 6.708054 AGACTTGACAATGAAAGTTAGACCAG 59.292 38.462 7.32 0.00 36.77 4.00
615 634 7.016072 CCAGACTGAAGGATATGATTTCCTAGT 59.984 40.741 4.84 6.04 42.90 2.57
616 635 7.871973 CAGACTGAAGGATATGATTTCCTAGTG 59.128 40.741 10.75 4.92 42.90 2.74
623 642 5.106396 GGATATGATTTCCTAGTGCACATGC 60.106 44.000 21.04 0.17 42.50 4.06
646 668 7.537715 TGCGTATGAATCTCACAAAAATGAAT 58.462 30.769 0.00 0.00 0.00 2.57
647 669 7.485595 TGCGTATGAATCTCACAAAAATGAATG 59.514 33.333 0.00 0.00 0.00 2.67
712 735 2.767644 AGTAAAGGCCCAAGGTTTGT 57.232 45.000 0.00 0.00 0.00 2.83
714 737 1.044611 TAAAGGCCCAAGGTTTGTGC 58.955 50.000 0.00 0.00 33.01 4.57
716 739 0.187361 AAGGCCCAAGGTTTGTGCTA 59.813 50.000 0.00 0.00 34.31 3.49
738 761 4.638304 AGTCAAACCGTTTGTGCTATAGT 58.362 39.130 20.71 3.82 41.36 2.12
739 762 4.689345 AGTCAAACCGTTTGTGCTATAGTC 59.311 41.667 20.71 0.00 41.36 2.59
740 763 4.449743 GTCAAACCGTTTGTGCTATAGTCA 59.550 41.667 20.71 0.00 41.36 3.41
741 764 4.449743 TCAAACCGTTTGTGCTATAGTCAC 59.550 41.667 20.71 15.97 41.36 3.67
742 765 3.671008 ACCGTTTGTGCTATAGTCACA 57.329 42.857 19.55 19.55 42.10 3.58
743 766 3.323243 ACCGTTTGTGCTATAGTCACAC 58.677 45.455 21.82 13.29 43.32 3.82
744 767 3.243941 ACCGTTTGTGCTATAGTCACACA 60.244 43.478 21.82 15.24 43.32 3.72
753 776 9.529325 TTGTGCTATAGTCACACAATAGTATTC 57.471 33.333 21.82 0.26 46.33 1.75
754 777 8.914011 TGTGCTATAGTCACACAATAGTATTCT 58.086 33.333 19.55 0.00 41.11 2.40
755 778 9.751542 GTGCTATAGTCACACAATAGTATTCTT 57.248 33.333 17.22 0.00 34.43 2.52
836 863 2.414750 CTTCCAAGCAACCCACGTT 58.585 52.632 0.00 0.00 0.00 3.99
863 890 7.991460 GGTGGCCAAGAATAACTTTACTACTAT 59.009 37.037 7.24 0.00 36.61 2.12
864 891 9.392259 GTGGCCAAGAATAACTTTACTACTATT 57.608 33.333 7.24 0.00 36.61 1.73
926 954 6.757010 CACTTCTTTATATACACTTGGCGACT 59.243 38.462 0.00 0.00 0.00 4.18
933 961 1.069765 CACTTGGCGACTGACCACT 59.930 57.895 0.00 0.00 36.76 4.00
956 984 4.617253 TCCTTCAACACAAGCTAGCTAA 57.383 40.909 19.70 5.64 0.00 3.09
1044 1083 1.948138 CATAGCTCTGGCGCTCGTG 60.948 63.158 7.64 0.51 44.37 4.35
1147 1281 7.959733 GCTATACGCTACATACATGCATTTTA 58.040 34.615 0.00 0.00 35.14 1.52
1170 1304 4.698780 ACATGGACATAGATACATGCATGC 59.301 41.667 26.53 11.82 43.28 4.06
1177 1718 1.001746 AGATACATGCATGCGAGAGGG 59.998 52.381 26.53 0.29 0.00 4.30
1199 1740 2.289274 TGGTTTGAGTGCACATGTAACG 59.711 45.455 21.04 0.00 0.00 3.18
1294 1871 0.904865 TGGTGATCCTTGAGGCGACT 60.905 55.000 0.00 0.00 37.88 4.18
1500 2077 1.026718 AAGCAAGAGTATGTGCGGGC 61.027 55.000 0.00 0.00 45.62 6.13
1558 2387 6.096705 TCAATCATAGCCAAAATCACCGAATT 59.903 34.615 0.00 0.00 0.00 2.17
1586 2415 9.450807 CACTCAAATTTAGTGACTTCGATTTTT 57.549 29.630 16.45 0.00 45.89 1.94
1587 2416 9.665264 ACTCAAATTTAGTGACTTCGATTTTTC 57.335 29.630 0.00 0.00 0.00 2.29
1599 2428 5.011023 ACTTCGATTTTTCTTCCTGCCAAAT 59.989 36.000 0.00 0.00 0.00 2.32
1637 2466 7.065324 CGGCTTACATTAAACTTAGATCCAACA 59.935 37.037 0.00 0.00 0.00 3.33
1869 2911 5.817296 ACGACCAGTACGTATACAGTTCATA 59.183 40.000 0.00 0.00 42.17 2.15
1871 2913 7.657354 ACGACCAGTACGTATACAGTTCATATA 59.343 37.037 0.00 0.00 42.17 0.86
1876 2923 9.841880 CAGTACGTATACAGTTCATATATTGCT 57.158 33.333 0.00 0.00 33.30 3.91
1892 2939 1.745264 GCTCCCTGCAGTAGCTAGG 59.255 63.158 23.96 13.13 42.74 3.02
1893 2940 1.745264 CTCCCTGCAGTAGCTAGGC 59.255 63.158 13.81 9.79 42.74 3.93
1894 2941 1.753368 CTCCCTGCAGTAGCTAGGCC 61.753 65.000 13.81 0.00 42.74 5.19
1895 2942 2.066393 CCCTGCAGTAGCTAGGCCA 61.066 63.158 13.81 1.83 42.74 5.36
1905 2956 1.522580 GCTAGGCCAGTGTGCTAGC 60.523 63.158 8.10 8.10 36.64 3.42
1909 2960 2.042831 GGCCAGTGTGCTAGCTTGG 61.043 63.158 17.23 17.68 30.07 3.61
1912 2963 1.896220 CCAGTGTGCTAGCTTGGAAA 58.104 50.000 17.23 0.00 0.00 3.13
1916 2967 4.002982 CAGTGTGCTAGCTTGGAAACATA 58.997 43.478 17.23 0.00 42.32 2.29
1919 2970 5.711976 AGTGTGCTAGCTTGGAAACATAAAT 59.288 36.000 17.23 0.00 42.32 1.40
1920 2971 6.030228 GTGTGCTAGCTTGGAAACATAAATC 58.970 40.000 17.23 0.00 42.32 2.17
1921 2972 5.945784 TGTGCTAGCTTGGAAACATAAATCT 59.054 36.000 17.23 0.00 42.32 2.40
1922 2973 6.127925 TGTGCTAGCTTGGAAACATAAATCTG 60.128 38.462 17.23 0.00 42.32 2.90
1925 2976 6.094048 GCTAGCTTGGAAACATAAATCTGTGA 59.906 38.462 7.70 0.00 42.32 3.58
1926 2977 7.201767 GCTAGCTTGGAAACATAAATCTGTGAT 60.202 37.037 7.70 0.00 42.32 3.06
1927 2978 9.330063 CTAGCTTGGAAACATAAATCTGTGATA 57.670 33.333 0.00 0.00 42.32 2.15
1928 2979 8.218338 AGCTTGGAAACATAAATCTGTGATAG 57.782 34.615 0.00 0.00 42.32 2.08
1930 2981 9.109393 GCTTGGAAACATAAATCTGTGATAGTA 57.891 33.333 0.00 0.00 42.32 1.82
1947 2998 9.263446 TGTGATAGTACTTGTTAGGGATTTAGT 57.737 33.333 0.00 0.00 0.00 2.24
1949 3000 9.483489 TGATAGTACTTGTTAGGGATTTAGTGA 57.517 33.333 0.00 0.00 0.00 3.41
1953 3004 8.047310 AGTACTTGTTAGGGATTTAGTGAATGG 58.953 37.037 0.00 0.00 0.00 3.16
1954 3005 6.790319 ACTTGTTAGGGATTTAGTGAATGGT 58.210 36.000 0.00 0.00 0.00 3.55
1955 3006 7.238710 ACTTGTTAGGGATTTAGTGAATGGTT 58.761 34.615 0.00 0.00 0.00 3.67
1956 3007 7.176690 ACTTGTTAGGGATTTAGTGAATGGTTG 59.823 37.037 0.00 0.00 0.00 3.77
1957 3008 5.949354 TGTTAGGGATTTAGTGAATGGTTGG 59.051 40.000 0.00 0.00 0.00 3.77
1958 3009 4.946160 AGGGATTTAGTGAATGGTTGGA 57.054 40.909 0.00 0.00 0.00 3.53
1962 3013 5.163416 GGGATTTAGTGAATGGTTGGATTGG 60.163 44.000 0.00 0.00 0.00 3.16
1963 3014 5.422012 GGATTTAGTGAATGGTTGGATTGGT 59.578 40.000 0.00 0.00 0.00 3.67
1964 3015 6.605594 GGATTTAGTGAATGGTTGGATTGGTA 59.394 38.462 0.00 0.00 0.00 3.25
1968 3019 4.956075 AGTGAATGGTTGGATTGGTATTCC 59.044 41.667 0.00 0.00 0.00 3.01
1969 3020 4.709397 GTGAATGGTTGGATTGGTATTCCA 59.291 41.667 0.00 0.00 41.50 3.53
1971 3022 4.879295 ATGGTTGGATTGGTATTCCAGA 57.121 40.909 0.00 0.00 43.87 3.86
1972 3023 3.963129 TGGTTGGATTGGTATTCCAGAC 58.037 45.455 0.00 0.00 43.87 3.51
1973 3024 2.943033 GGTTGGATTGGTATTCCAGACG 59.057 50.000 0.00 0.00 43.87 4.18
1974 3025 3.370103 GGTTGGATTGGTATTCCAGACGA 60.370 47.826 0.00 0.00 43.87 4.20
1975 3026 3.819564 TGGATTGGTATTCCAGACGAG 57.180 47.619 0.00 0.00 45.22 4.18
1976 3027 2.434336 TGGATTGGTATTCCAGACGAGG 59.566 50.000 0.00 0.00 45.22 4.63
1977 3028 2.224305 GGATTGGTATTCCAGACGAGGG 60.224 54.545 0.00 0.00 45.22 4.30
1978 3029 2.241281 TTGGTATTCCAGACGAGGGA 57.759 50.000 0.00 0.00 45.22 4.20
1987 3038 4.672587 TCCAGACGAGGGAATATGAAAG 57.327 45.455 0.00 0.00 0.00 2.62
1989 3040 4.099573 TCCAGACGAGGGAATATGAAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
1990 3041 4.141937 CCAGACGAGGGAATATGAAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
1991 3042 5.453903 CCAGACGAGGGAATATGAAAGACAT 60.454 44.000 0.00 0.00 42.39 3.06
1992 3043 5.464722 CAGACGAGGGAATATGAAAGACATG 59.535 44.000 0.00 0.00 39.77 3.21
1993 3044 4.708177 ACGAGGGAATATGAAAGACATGG 58.292 43.478 0.00 0.00 39.77 3.66
1994 3045 4.067896 CGAGGGAATATGAAAGACATGGG 58.932 47.826 0.00 0.00 39.77 4.00
1995 3046 4.202357 CGAGGGAATATGAAAGACATGGGA 60.202 45.833 0.00 0.00 39.77 4.37
1996 3047 5.687441 CGAGGGAATATGAAAGACATGGGAA 60.687 44.000 0.00 0.00 39.77 3.97
2009 3060 3.156157 TGGGAACAAAACGTCACGT 57.844 47.368 0.00 0.00 38.89 4.49
2010 3061 1.451067 TGGGAACAAAACGTCACGTT 58.549 45.000 10.53 10.53 44.18 3.99
2011 3062 2.625737 TGGGAACAAAACGTCACGTTA 58.374 42.857 17.57 0.00 42.98 3.18
2013 3064 3.248125 TGGGAACAAAACGTCACGTTATC 59.752 43.478 17.57 12.06 42.98 1.75
2014 3065 4.978840 TGGGAACAAAACGTCACGTTATCT 60.979 41.667 17.57 0.00 42.98 1.98
2016 3067 8.365575 TGGGAACAAAACGTCACGTTATCTTG 62.366 42.308 17.57 18.82 42.98 3.02
2026 3077 6.849811 ACGTCACGTTATCTTGAATACTATCG 59.150 38.462 0.00 0.00 36.35 2.92
2027 3078 7.067728 CGTCACGTTATCTTGAATACTATCGA 58.932 38.462 0.00 0.00 0.00 3.59
2028 3079 7.745155 CGTCACGTTATCTTGAATACTATCGAT 59.255 37.037 2.16 2.16 0.00 3.59
2029 3080 9.395707 GTCACGTTATCTTGAATACTATCGATT 57.604 33.333 1.71 0.00 0.00 3.34
2040 3091 8.895932 TGAATACTATCGATTACATGATCGTG 57.104 34.615 13.53 13.53 46.68 4.35
2041 3092 8.512138 TGAATACTATCGATTACATGATCGTGT 58.488 33.333 23.45 23.45 46.68 4.49
2046 3164 8.943002 ACTATCGATTACATGATCGTGTACATA 58.057 33.333 24.26 12.73 46.68 2.29
2047 3165 9.427127 CTATCGATTACATGATCGTGTACATAG 57.573 37.037 24.26 20.23 46.68 2.23
2048 3166 7.429636 TCGATTACATGATCGTGTACATAGA 57.570 36.000 24.26 20.43 46.68 1.98
2072 3397 8.689054 AGAGAAATATAGGATTAGTCAGGGGTA 58.311 37.037 0.00 0.00 0.00 3.69
2076 3401 7.996758 ATATAGGATTAGTCAGGGGTATTGG 57.003 40.000 0.00 0.00 0.00 3.16
2082 3407 2.915869 AGTCAGGGGTATTGGAAGTCA 58.084 47.619 0.00 0.00 0.00 3.41
2083 3408 3.256704 AGTCAGGGGTATTGGAAGTCAA 58.743 45.455 0.00 0.00 40.01 3.18
2086 3411 5.491078 AGTCAGGGGTATTGGAAGTCAATTA 59.509 40.000 0.00 0.00 43.04 1.40
2087 3412 5.589050 GTCAGGGGTATTGGAAGTCAATTAC 59.411 44.000 0.00 0.00 43.04 1.89
2088 3413 4.887655 CAGGGGTATTGGAAGTCAATTACC 59.112 45.833 0.00 0.00 43.04 2.85
2089 3414 4.212716 GGGGTATTGGAAGTCAATTACCC 58.787 47.826 14.04 14.04 45.87 3.69
2090 3415 3.881089 GGGTATTGGAAGTCAATTACCCG 59.119 47.826 9.18 0.00 43.04 5.28
2093 3418 2.570415 TGGAAGTCAATTACCCGCAA 57.430 45.000 0.00 0.00 0.00 4.85
2094 3419 2.865079 TGGAAGTCAATTACCCGCAAA 58.135 42.857 0.00 0.00 0.00 3.68
2095 3420 3.223435 TGGAAGTCAATTACCCGCAAAA 58.777 40.909 0.00 0.00 0.00 2.44
2125 3496 1.139654 GCTGATGGCTCATACTCACCA 59.860 52.381 0.00 0.00 38.06 4.17
2133 3504 4.021981 TGGCTCATACTCACCATTATCTCG 60.022 45.833 0.00 0.00 0.00 4.04
2136 3507 6.127591 GGCTCATACTCACCATTATCTCGTAT 60.128 42.308 0.00 0.00 0.00 3.06
2138 3509 7.148154 GCTCATACTCACCATTATCTCGTATCT 60.148 40.741 0.00 0.00 0.00 1.98
2141 3512 8.735315 CATACTCACCATTATCTCGTATCTCTT 58.265 37.037 0.00 0.00 0.00 2.85
2142 3513 7.589958 ACTCACCATTATCTCGTATCTCTTT 57.410 36.000 0.00 0.00 0.00 2.52
2143 3514 7.429633 ACTCACCATTATCTCGTATCTCTTTG 58.570 38.462 0.00 0.00 0.00 2.77
2144 3515 7.068839 ACTCACCATTATCTCGTATCTCTTTGT 59.931 37.037 0.00 0.00 0.00 2.83
2145 3516 7.782049 TCACCATTATCTCGTATCTCTTTGTT 58.218 34.615 0.00 0.00 0.00 2.83
2146 3517 7.921214 TCACCATTATCTCGTATCTCTTTGTTC 59.079 37.037 0.00 0.00 0.00 3.18
2147 3518 7.169982 CACCATTATCTCGTATCTCTTTGTTCC 59.830 40.741 0.00 0.00 0.00 3.62
2148 3519 7.147724 ACCATTATCTCGTATCTCTTTGTTCCA 60.148 37.037 0.00 0.00 0.00 3.53
2149 3520 7.710907 CCATTATCTCGTATCTCTTTGTTCCAA 59.289 37.037 0.00 0.00 0.00 3.53
2150 3521 9.098355 CATTATCTCGTATCTCTTTGTTCCAAA 57.902 33.333 0.00 0.00 0.00 3.28
2151 3522 9.667107 ATTATCTCGTATCTCTTTGTTCCAAAA 57.333 29.630 0.00 0.00 0.00 2.44
2152 3523 9.667107 TTATCTCGTATCTCTTTGTTCCAAAAT 57.333 29.630 0.00 0.00 0.00 1.82
2154 3525 8.703604 TCTCGTATCTCTTTGTTCCAAAATAG 57.296 34.615 0.00 0.00 0.00 1.73
2155 3526 8.528643 TCTCGTATCTCTTTGTTCCAAAATAGA 58.471 33.333 0.00 0.00 29.93 1.98
2156 3527 9.319143 CTCGTATCTCTTTGTTCCAAAATAGAT 57.681 33.333 13.96 13.96 37.04 1.98
2157 3528 9.098355 TCGTATCTCTTTGTTCCAAAATAGATG 57.902 33.333 16.66 7.73 35.18 2.90
2158 3529 9.098355 CGTATCTCTTTGTTCCAAAATAGATGA 57.902 33.333 16.66 1.59 35.18 2.92
2160 3531 7.687941 TCTCTTTGTTCCAAAATAGATGACC 57.312 36.000 0.00 0.00 0.00 4.02
2161 3532 6.659242 TCTCTTTGTTCCAAAATAGATGACCC 59.341 38.462 0.00 0.00 0.00 4.46
2162 3533 6.310941 TCTTTGTTCCAAAATAGATGACCCA 58.689 36.000 0.00 0.00 0.00 4.51
2163 3534 6.780031 TCTTTGTTCCAAAATAGATGACCCAA 59.220 34.615 0.00 0.00 0.00 4.12
2164 3535 5.975693 TGTTCCAAAATAGATGACCCAAC 57.024 39.130 0.00 0.00 0.00 3.77
2165 3536 5.640147 TGTTCCAAAATAGATGACCCAACT 58.360 37.500 0.00 0.00 0.00 3.16
2166 3537 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
2167 3538 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
2168 3539 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2169 3540 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2170 3541 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2171 3542 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2172 3543 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2173 3544 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2174 3545 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2175 3546 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2176 3547 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2177 3548 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2178 3549 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2179 3550 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2180 3551 6.416415 TGACCCAACTTTGTACTAACTTTGA 58.584 36.000 0.00 0.00 0.00 2.69
2181 3552 6.316890 TGACCCAACTTTGTACTAACTTTGAC 59.683 38.462 0.00 0.00 0.00 3.18
2182 3553 5.591472 ACCCAACTTTGTACTAACTTTGACC 59.409 40.000 0.00 0.00 0.00 4.02
2183 3554 5.009310 CCCAACTTTGTACTAACTTTGACCC 59.991 44.000 0.00 0.00 0.00 4.46
2184 3555 5.591067 CCAACTTTGTACTAACTTTGACCCA 59.409 40.000 0.00 0.00 0.00 4.51
2185 3556 6.095720 CCAACTTTGTACTAACTTTGACCCAA 59.904 38.462 0.00 0.00 0.00 4.12
2186 3557 6.688637 ACTTTGTACTAACTTTGACCCAAC 57.311 37.500 0.00 0.00 0.00 3.77
2187 3558 6.420638 ACTTTGTACTAACTTTGACCCAACT 58.579 36.000 0.00 0.00 0.00 3.16
2188 3559 6.888088 ACTTTGTACTAACTTTGACCCAACTT 59.112 34.615 0.00 0.00 0.00 2.66
2189 3560 6.687081 TTGTACTAACTTTGACCCAACTTG 57.313 37.500 0.00 0.00 0.00 3.16
2190 3561 5.747342 TGTACTAACTTTGACCCAACTTGT 58.253 37.500 0.00 0.00 0.00 3.16
2191 3562 6.887013 TGTACTAACTTTGACCCAACTTGTA 58.113 36.000 0.00 0.00 0.00 2.41
2192 3563 7.511268 TGTACTAACTTTGACCCAACTTGTAT 58.489 34.615 0.00 0.00 0.00 2.29
2193 3564 7.994334 TGTACTAACTTTGACCCAACTTGTATT 59.006 33.333 0.00 0.00 0.00 1.89
2194 3565 9.492973 GTACTAACTTTGACCCAACTTGTATTA 57.507 33.333 0.00 0.00 0.00 0.98
2195 3566 8.983702 ACTAACTTTGACCCAACTTGTATTAA 57.016 30.769 0.00 0.00 0.00 1.40
2196 3567 9.411189 ACTAACTTTGACCCAACTTGTATTAAA 57.589 29.630 0.00 0.00 0.00 1.52
2197 3568 9.893305 CTAACTTTGACCCAACTTGTATTAAAG 57.107 33.333 0.00 0.00 0.00 1.85
2198 3569 7.891498 ACTTTGACCCAACTTGTATTAAAGT 57.109 32.000 0.00 0.00 42.21 2.66
2200 3571 9.411189 ACTTTGACCCAACTTGTATTAAAGTTA 57.589 29.630 2.26 0.00 46.19 2.24
2201 3572 9.893305 CTTTGACCCAACTTGTATTAAAGTTAG 57.107 33.333 2.26 1.05 46.19 2.34
2202 3573 8.983702 TTGACCCAACTTGTATTAAAGTTAGT 57.016 30.769 2.26 3.85 46.19 2.24
2204 3575 9.492973 TGACCCAACTTGTATTAAAGTTAGTAC 57.507 33.333 2.26 0.00 46.19 2.73
2205 3576 9.492973 GACCCAACTTGTATTAAAGTTAGTACA 57.507 33.333 2.26 3.15 46.19 2.90
2206 3577 9.850198 ACCCAACTTGTATTAAAGTTAGTACAA 57.150 29.630 14.65 14.65 46.19 2.41
2214 3585 9.850198 TGTATTAAAGTTAGTACAAAGTTGGGT 57.150 29.630 4.48 0.00 34.32 4.51
2216 3587 8.983702 ATTAAAGTTAGTACAAAGTTGGGTCA 57.016 30.769 0.00 0.00 0.00 4.02
2217 3588 8.983702 TTAAAGTTAGTACAAAGTTGGGTCAT 57.016 30.769 0.00 0.00 0.00 3.06
2218 3589 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
2219 3590 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2220 3591 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2221 3592 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2222 3593 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2223 3594 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2224 3595 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2225 3596 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2226 3597 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2227 3598 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2228 3599 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2229 3600 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2230 3601 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2231 3602 4.561500 TGGGTCATCTATTTTGGAACGA 57.438 40.909 0.00 0.00 0.00 3.85
2232 3603 4.912586 TGGGTCATCTATTTTGGAACGAA 58.087 39.130 0.00 0.00 0.00 3.85
2233 3604 4.941263 TGGGTCATCTATTTTGGAACGAAG 59.059 41.667 0.00 0.00 0.00 3.79
2234 3605 4.335594 GGGTCATCTATTTTGGAACGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
2235 3606 4.335594 GGTCATCTATTTTGGAACGAAGGG 59.664 45.833 0.00 0.00 0.00 3.95
2236 3607 5.183228 GTCATCTATTTTGGAACGAAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
2237 3608 5.294552 GTCATCTATTTTGGAACGAAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2263 3634 4.966965 ACTCTATGTAGTTGTCTCCACG 57.033 45.455 0.00 0.00 0.00 4.94
2265 3636 4.636648 ACTCTATGTAGTTGTCTCCACGAG 59.363 45.833 0.00 0.00 0.00 4.18
2274 3645 0.247736 GTCTCCACGAGTGCCTGAAT 59.752 55.000 0.00 0.00 0.00 2.57
2283 3654 5.168569 CACGAGTGCCTGAATAAGACTTAA 58.831 41.667 0.00 0.00 0.00 1.85
2284 3655 5.812642 CACGAGTGCCTGAATAAGACTTAAT 59.187 40.000 0.00 0.00 0.00 1.40
2285 3656 6.019479 CACGAGTGCCTGAATAAGACTTAATC 60.019 42.308 0.00 1.05 0.00 1.75
2286 3657 5.174035 CGAGTGCCTGAATAAGACTTAATCG 59.826 44.000 0.00 0.00 0.00 3.34
2287 3658 4.811557 AGTGCCTGAATAAGACTTAATCGC 59.188 41.667 0.00 1.73 0.00 4.58
2288 3659 4.570772 GTGCCTGAATAAGACTTAATCGCA 59.429 41.667 8.11 8.11 0.00 5.10
2289 3660 5.237344 GTGCCTGAATAAGACTTAATCGCAT 59.763 40.000 12.90 0.00 0.00 4.73
2290 3661 6.423905 GTGCCTGAATAAGACTTAATCGCATA 59.576 38.462 12.90 0.00 0.00 3.14
2292 3663 8.311109 TGCCTGAATAAGACTTAATCGCATATA 58.689 33.333 8.11 0.00 0.00 0.86
2293 3664 9.319143 GCCTGAATAAGACTTAATCGCATATAT 57.681 33.333 0.00 0.00 0.00 0.86
2316 3704 5.530176 ATTGTTGTATTGTTACCCTCCCT 57.470 39.130 0.00 0.00 0.00 4.20
2318 3706 4.913784 TGTTGTATTGTTACCCTCCCTTC 58.086 43.478 0.00 0.00 0.00 3.46
2319 3707 4.600111 TGTTGTATTGTTACCCTCCCTTCT 59.400 41.667 0.00 0.00 0.00 2.85
2327 3715 6.996180 TGTTACCCTCCCTTCTCAATATAG 57.004 41.667 0.00 0.00 0.00 1.31
2400 3801 7.064134 CAGTTTGCAATGCTACATCATCAAATT 59.936 33.333 6.82 0.00 29.18 1.82
2431 3833 2.118951 AAATGCCAGCCACTGCCT 59.881 55.556 0.00 0.00 38.69 4.75
2432 3834 1.534717 AAATGCCAGCCACTGCCTT 60.535 52.632 0.00 0.00 38.69 4.35
2456 3858 6.115446 TGTCCAAGAGCCAACTTTCATATAG 58.885 40.000 0.00 0.00 0.00 1.31
2465 3867 5.358160 GCCAACTTTCATATAGAAGTGCCTT 59.642 40.000 4.25 0.00 37.57 4.35
2522 3999 1.340600 CCAACCCTATTTTCGCCTCCA 60.341 52.381 0.00 0.00 0.00 3.86
2524 4001 1.286248 ACCCTATTTTCGCCTCCAGT 58.714 50.000 0.00 0.00 0.00 4.00
2619 4130 7.275779 AGTGCGACATCACTAACTATTTTACTG 59.724 37.037 0.00 0.00 44.77 2.74
2648 4159 4.026356 AGCTTCCTCACAGCTGTAAAAT 57.974 40.909 21.20 0.00 46.25 1.82
2650 4161 5.560724 AGCTTCCTCACAGCTGTAAAATAA 58.439 37.500 21.20 9.54 46.25 1.40
2651 4162 6.183347 AGCTTCCTCACAGCTGTAAAATAAT 58.817 36.000 21.20 0.00 46.25 1.28
2655 4166 4.273480 CCTCACAGCTGTAAAATAATCCGG 59.727 45.833 21.20 2.28 0.00 5.14
2662 4174 4.023450 GCTGTAAAATAATCCGGTTAGGCC 60.023 45.833 0.00 0.00 40.77 5.19
2663 4175 5.374071 CTGTAAAATAATCCGGTTAGGCCT 58.626 41.667 11.78 11.78 40.77 5.19
2672 4184 1.068741 CCGGTTAGGCCTAGTGCTAAG 59.931 57.143 13.36 1.98 40.92 2.18
2681 4193 8.419442 GTTAGGCCTAGTGCTAAGTATCTTAAA 58.581 37.037 13.36 0.00 40.92 1.52
2682 4194 7.619512 AGGCCTAGTGCTAAGTATCTTAAAT 57.380 36.000 1.29 0.00 40.92 1.40
2684 4196 6.651225 GGCCTAGTGCTAAGTATCTTAAATGG 59.349 42.308 0.00 0.00 40.92 3.16
2687 4199 9.832445 CCTAGTGCTAAGTATCTTAAATGGAAA 57.168 33.333 0.00 0.00 0.00 3.13
2779 4292 5.534207 AGCAATTGTTTGTTGATCTCCAA 57.466 34.783 7.40 0.00 35.17 3.53
2834 4420 4.043200 GCAACCTCGCCCTTGTGC 62.043 66.667 0.00 0.00 0.00 4.57
3046 5128 4.514577 CGCGGGGCAGTACCTCAG 62.515 72.222 0.00 0.00 40.00 3.35
3294 7269 1.002624 ATGGCCGTGTACACCAAGG 60.003 57.895 20.11 15.99 44.69 3.61
3706 7777 6.950842 TCACTCATTCTCCACTGACAATAAT 58.049 36.000 0.00 0.00 0.00 1.28
3733 7808 9.467258 ACTAAATTGATGTTTTTCTGTGATGTG 57.533 29.630 0.00 0.00 0.00 3.21
4166 8243 6.892658 TGCCTAATAATACCATCGCAATTT 57.107 33.333 0.00 0.00 0.00 1.82
4479 8556 8.111545 TGGGAAGCAAAGATATATTCATATGCT 58.888 33.333 0.00 1.97 39.77 3.79
4632 8710 7.926018 AGAAAAAGTTGGTGCCTAGTTAATTTG 59.074 33.333 0.00 0.00 0.00 2.32
4633 8711 6.969993 AAAGTTGGTGCCTAGTTAATTTGA 57.030 33.333 0.00 0.00 0.00 2.69
4634 8712 6.575162 AAGTTGGTGCCTAGTTAATTTGAG 57.425 37.500 0.00 0.00 0.00 3.02
4645 8723 7.770897 GCCTAGTTAATTTGAGAAATCAGGAGA 59.229 37.037 0.00 0.00 0.00 3.71
4651 8729 7.601705 AATTTGAGAAATCAGGAGAAAACCA 57.398 32.000 0.00 0.00 0.00 3.67
4710 8788 7.502226 CCACCAGCCTTCTTGAAATATGTATTA 59.498 37.037 0.00 0.00 0.00 0.98
4743 8821 7.201732 GCACAGATTGTATTATAGCACCACTTT 60.202 37.037 0.00 0.00 0.00 2.66
4825 8903 3.323243 ACGAGGTTCCACGTTAATTCTG 58.677 45.455 8.36 0.00 39.75 3.02
4887 8965 2.689553 TTCTAGCCGTTCATCATGCA 57.310 45.000 0.00 0.00 0.00 3.96
4903 8981 2.008242 TGCATAACAAGCCCCTTTGT 57.992 45.000 0.00 0.00 42.82 2.83
4925 9003 4.189188 CCACGTACGAGAGCCCCG 62.189 72.222 24.41 0.00 0.00 5.73
5008 9086 3.559069 ACATGAGCCATATTGTCCTTGG 58.441 45.455 0.00 0.00 0.00 3.61
5013 9091 2.173569 AGCCATATTGTCCTTGGTCTCC 59.826 50.000 0.00 0.00 32.90 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.390162 ACCAGTTTTGTTCATTTTTCAACACAT 59.610 29.630 0.00 0.00 0.00 3.21
32 33 6.708054 ACCAGTTTTGTTCATTTTTCAACACA 59.292 30.769 0.00 0.00 0.00 3.72
35 36 7.357951 TCACCAGTTTTGTTCATTTTTCAAC 57.642 32.000 0.00 0.00 0.00 3.18
39 40 6.712547 TGGTTTCACCAGTTTTGTTCATTTTT 59.287 30.769 0.00 0.00 44.79 1.94
56 57 6.749118 GCATCTATGACAAAGAATGGTTTCAC 59.251 38.462 0.00 0.00 34.08 3.18
104 105 7.283127 ACATACGGATGAAAGCAGAACATAATT 59.717 33.333 16.36 0.00 36.48 1.40
115 116 2.627945 TGACCACATACGGATGAAAGC 58.372 47.619 16.36 1.51 36.48 3.51
175 176 3.406595 ATTCTAGGCGGCTGCACCC 62.407 63.158 23.55 1.33 45.35 4.61
202 203 6.423604 CAGCCAAACTTGTTAAATAAACCCTG 59.576 38.462 0.00 0.00 37.27 4.45
205 206 6.201997 CACCAGCCAAACTTGTTAAATAAACC 59.798 38.462 0.00 0.00 37.27 3.27
208 209 6.716934 TCACCAGCCAAACTTGTTAAATAA 57.283 33.333 0.00 0.00 0.00 1.40
227 228 1.751924 AGATTCTACGAGTGGCTCACC 59.248 52.381 0.00 0.00 34.49 4.02
229 230 2.164422 CACAGATTCTACGAGTGGCTCA 59.836 50.000 0.00 0.00 0.00 4.26
230 231 2.480416 CCACAGATTCTACGAGTGGCTC 60.480 54.545 7.70 0.00 42.68 4.70
238 239 3.724508 AGCTCATCCACAGATTCTACG 57.275 47.619 0.00 0.00 0.00 3.51
246 247 4.084171 CGCAATTACATAGCTCATCCACAG 60.084 45.833 0.00 0.00 0.00 3.66
271 272 4.687464 GACCACAACCCGTCGAAT 57.313 55.556 0.00 0.00 0.00 3.34
276 277 1.816259 CAACACGACCACAACCCGT 60.816 57.895 0.00 0.00 36.95 5.28
278 279 2.115911 TGCAACACGACCACAACCC 61.116 57.895 0.00 0.00 0.00 4.11
288 289 8.162880 TGTAAAACAAATAAAAAGTGCAACACG 58.837 29.630 0.00 0.00 41.43 4.49
316 317 7.181143 TCAAGTTACATCACCGAGTTTAAAC 57.819 36.000 10.47 10.47 0.00 2.01
325 326 5.799960 GATGTGAATCAAGTTACATCACCG 58.200 41.667 9.58 0.00 45.32 4.94
346 348 7.394359 GGATGCACACAACCCATATTATTAGAT 59.606 37.037 0.00 0.00 32.67 1.98
358 360 0.537143 TCACAGGATGCACACAACCC 60.537 55.000 0.00 0.00 42.53 4.11
380 382 4.776322 TGATTGCCCCGGCGTCTG 62.776 66.667 6.01 0.00 45.51 3.51
384 386 2.195567 AATGATGATTGCCCCGGCG 61.196 57.895 0.00 0.00 45.51 6.46
443 460 7.502226 TGACATAAACACAAGAGGAAGTCAAAT 59.498 33.333 0.00 0.00 30.32 2.32
504 521 7.773864 TGTTTCACTAAGTTTATGTTGACGA 57.226 32.000 0.00 0.00 0.00 4.20
538 557 1.630369 TCTGCACAATAGCCCACTTCT 59.370 47.619 0.00 0.00 0.00 2.85
586 605 6.183361 GGAAATCATATCCTTCAGTCTGGTCT 60.183 42.308 0.00 0.00 33.98 3.85
592 611 6.648725 GCACTAGGAAATCATATCCTTCAGTC 59.351 42.308 0.00 0.00 45.06 3.51
615 634 2.609002 GTGAGATTCATACGCATGTGCA 59.391 45.455 6.08 0.00 42.21 4.57
616 635 2.609002 TGTGAGATTCATACGCATGTGC 59.391 45.455 6.08 0.00 33.57 4.57
623 642 7.970061 ACCATTCATTTTTGTGAGATTCATACG 59.030 33.333 0.00 0.00 0.00 3.06
712 735 1.332375 GCACAAACGGTTTGACTAGCA 59.668 47.619 33.41 0.00 43.26 3.49
714 737 5.867716 ACTATAGCACAAACGGTTTGACTAG 59.132 40.000 33.41 24.48 43.26 2.57
716 739 4.638304 ACTATAGCACAAACGGTTTGACT 58.362 39.130 33.41 28.74 43.26 3.41
762 785 5.458779 CGAGAATACTATTGTGTGATTCGCA 59.541 40.000 0.00 0.00 32.85 5.10
763 786 5.107837 CCGAGAATACTATTGTGTGATTCGC 60.108 44.000 0.00 0.00 32.85 4.70
764 787 5.107837 GCCGAGAATACTATTGTGTGATTCG 60.108 44.000 0.00 0.00 32.85 3.34
765 788 5.177696 GGCCGAGAATACTATTGTGTGATTC 59.822 44.000 0.00 0.00 0.00 2.52
766 789 5.057149 GGCCGAGAATACTATTGTGTGATT 58.943 41.667 0.00 0.00 0.00 2.57
767 790 4.632153 GGCCGAGAATACTATTGTGTGAT 58.368 43.478 0.00 0.00 0.00 3.06
836 863 4.993028 AGTAAAGTTATTCTTGGCCACCA 58.007 39.130 3.88 0.00 36.40 4.17
837 864 6.178324 AGTAGTAAAGTTATTCTTGGCCACC 58.822 40.000 3.88 0.00 36.40 4.61
838 865 8.959705 ATAGTAGTAAAGTTATTCTTGGCCAC 57.040 34.615 3.88 0.00 36.40 5.01
863 890 1.524848 CGCGGGATCTCTCTAGCTAA 58.475 55.000 0.00 0.00 0.00 3.09
864 891 0.956410 GCGCGGGATCTCTCTAGCTA 60.956 60.000 8.83 0.00 0.00 3.32
865 892 2.265182 GCGCGGGATCTCTCTAGCT 61.265 63.158 8.83 0.00 0.00 3.32
866 893 2.257067 GCGCGGGATCTCTCTAGC 59.743 66.667 8.83 0.00 0.00 3.42
867 894 2.631580 GGGCGCGGGATCTCTCTAG 61.632 68.421 8.83 0.00 0.00 2.43
868 895 2.597805 GGGCGCGGGATCTCTCTA 60.598 66.667 8.83 0.00 0.00 2.43
902 929 6.757010 CAGTCGCCAAGTGTATATAAAGAAGT 59.243 38.462 0.00 0.00 0.00 3.01
926 954 4.641396 CTTGTGTTGAAGGATAGTGGTCA 58.359 43.478 0.00 0.00 0.00 4.02
933 961 4.826274 AGCTAGCTTGTGTTGAAGGATA 57.174 40.909 12.68 0.00 0.00 2.59
956 984 2.353208 CGAAGCTTGGAGACTTGCTAGT 60.353 50.000 2.10 0.00 38.30 2.57
1037 1076 3.181967 GTGCTGCTACCACGAGCG 61.182 66.667 0.00 0.00 45.99 5.03
1147 1281 4.698780 GCATGCATGTATCTATGTCCATGT 59.301 41.667 26.79 0.00 37.57 3.21
1157 1291 1.001746 CCCTCTCGCATGCATGTATCT 59.998 52.381 26.79 0.00 0.00 1.98
1170 1304 0.951040 GCACTCAAACCACCCTCTCG 60.951 60.000 0.00 0.00 0.00 4.04
1177 1718 3.628017 GTTACATGTGCACTCAAACCAC 58.372 45.455 19.41 2.62 0.00 4.16
1199 1740 2.608752 CCAAGCACAAGAACTTGCATCC 60.609 50.000 13.50 1.63 44.03 3.51
1500 2077 5.746245 TGAAACTGAAATACAAAAACCAGCG 59.254 36.000 0.00 0.00 0.00 5.18
1545 2372 8.661352 AAATTTGAGTGAAATTCGGTGATTTT 57.339 26.923 0.55 0.00 42.41 1.82
1576 2405 4.503741 TTGGCAGGAAGAAAAATCGAAG 57.496 40.909 0.00 0.00 0.00 3.79
1607 2436 9.654663 GGATCTAAGTTTAATGTAAGCCGATAT 57.345 33.333 0.00 0.00 0.00 1.63
1612 2441 8.276252 TGTTGGATCTAAGTTTAATGTAAGCC 57.724 34.615 0.00 0.00 0.00 4.35
1681 2510 5.119125 GCTGCATCCACACAAGAAAATTAAC 59.881 40.000 0.00 0.00 0.00 2.01
1876 2923 1.762460 GGCCTAGCTACTGCAGGGA 60.762 63.158 19.93 4.38 42.74 4.20
1893 2940 1.537202 GTTTCCAAGCTAGCACACTGG 59.463 52.381 18.83 16.72 0.00 4.00
1894 2941 2.221169 TGTTTCCAAGCTAGCACACTG 58.779 47.619 18.83 8.22 0.00 3.66
1895 2942 2.638480 TGTTTCCAAGCTAGCACACT 57.362 45.000 18.83 0.00 0.00 3.55
1916 2967 8.375493 TCCCTAACAAGTACTATCACAGATTT 57.625 34.615 0.00 0.00 0.00 2.17
1919 2970 7.973048 AATCCCTAACAAGTACTATCACAGA 57.027 36.000 0.00 0.00 0.00 3.41
1920 2971 9.751542 CTAAATCCCTAACAAGTACTATCACAG 57.248 37.037 0.00 0.00 0.00 3.66
1921 2972 9.263446 ACTAAATCCCTAACAAGTACTATCACA 57.737 33.333 0.00 0.00 0.00 3.58
1922 2973 9.530633 CACTAAATCCCTAACAAGTACTATCAC 57.469 37.037 0.00 0.00 0.00 3.06
1927 2978 8.047310 CCATTCACTAAATCCCTAACAAGTACT 58.953 37.037 0.00 0.00 0.00 2.73
1928 2979 7.827729 ACCATTCACTAAATCCCTAACAAGTAC 59.172 37.037 0.00 0.00 0.00 2.73
1930 2981 6.790319 ACCATTCACTAAATCCCTAACAAGT 58.210 36.000 0.00 0.00 0.00 3.16
1931 2982 7.362920 CCAACCATTCACTAAATCCCTAACAAG 60.363 40.741 0.00 0.00 0.00 3.16
1947 2998 4.940483 TGGAATACCAATCCAACCATTCA 58.060 39.130 0.00 0.00 43.84 2.57
1949 3000 4.956075 GTCTGGAATACCAATCCAACCATT 59.044 41.667 0.00 0.00 45.96 3.16
1950 3001 4.536765 GTCTGGAATACCAATCCAACCAT 58.463 43.478 0.00 0.00 45.96 3.55
1951 3002 3.621214 CGTCTGGAATACCAATCCAACCA 60.621 47.826 0.00 0.00 45.96 3.67
1952 3003 2.943033 CGTCTGGAATACCAATCCAACC 59.057 50.000 0.00 0.00 45.96 3.77
1953 3004 3.869065 TCGTCTGGAATACCAATCCAAC 58.131 45.455 0.00 0.00 45.96 3.77
1954 3005 3.118408 CCTCGTCTGGAATACCAATCCAA 60.118 47.826 0.00 0.00 45.96 3.53
1955 3006 2.434336 CCTCGTCTGGAATACCAATCCA 59.566 50.000 0.00 0.00 46.32 3.41
1956 3007 2.224305 CCCTCGTCTGGAATACCAATCC 60.224 54.545 0.00 0.00 46.32 3.01
1957 3008 2.698797 TCCCTCGTCTGGAATACCAATC 59.301 50.000 0.00 0.00 46.32 2.67
1958 3009 2.759355 TCCCTCGTCTGGAATACCAAT 58.241 47.619 0.00 0.00 46.32 3.16
1968 3019 5.011090 TGTCTTTCATATTCCCTCGTCTG 57.989 43.478 0.00 0.00 0.00 3.51
1969 3020 5.453903 CCATGTCTTTCATATTCCCTCGTCT 60.454 44.000 0.00 0.00 34.67 4.18
1971 3022 4.444876 CCCATGTCTTTCATATTCCCTCGT 60.445 45.833 0.00 0.00 34.67 4.18
1972 3023 4.067896 CCCATGTCTTTCATATTCCCTCG 58.932 47.826 0.00 0.00 34.67 4.63
1973 3024 5.310409 TCCCATGTCTTTCATATTCCCTC 57.690 43.478 0.00 0.00 34.67 4.30
1974 3025 5.044179 TGTTCCCATGTCTTTCATATTCCCT 60.044 40.000 0.00 0.00 34.67 4.20
1975 3026 5.200483 TGTTCCCATGTCTTTCATATTCCC 58.800 41.667 0.00 0.00 34.67 3.97
1976 3027 6.773976 TTGTTCCCATGTCTTTCATATTCC 57.226 37.500 0.00 0.00 34.67 3.01
1977 3028 7.273381 CGTTTTGTTCCCATGTCTTTCATATTC 59.727 37.037 0.00 0.00 34.67 1.75
1978 3029 7.090173 CGTTTTGTTCCCATGTCTTTCATATT 58.910 34.615 0.00 0.00 34.67 1.28
1980 3031 5.533154 ACGTTTTGTTCCCATGTCTTTCATA 59.467 36.000 0.00 0.00 34.67 2.15
1981 3032 4.340950 ACGTTTTGTTCCCATGTCTTTCAT 59.659 37.500 0.00 0.00 37.22 2.57
1982 3033 3.697045 ACGTTTTGTTCCCATGTCTTTCA 59.303 39.130 0.00 0.00 0.00 2.69
1983 3034 4.201970 TGACGTTTTGTTCCCATGTCTTTC 60.202 41.667 0.00 0.00 0.00 2.62
1984 3035 3.697045 TGACGTTTTGTTCCCATGTCTTT 59.303 39.130 0.00 0.00 0.00 2.52
1986 3037 2.616842 GTGACGTTTTGTTCCCATGTCT 59.383 45.455 0.00 0.00 0.00 3.41
1987 3038 2.601266 CGTGACGTTTTGTTCCCATGTC 60.601 50.000 0.00 0.00 0.00 3.06
1989 3040 1.332375 ACGTGACGTTTTGTTCCCATG 59.668 47.619 4.10 0.00 36.35 3.66
1990 3041 1.670791 ACGTGACGTTTTGTTCCCAT 58.329 45.000 4.10 0.00 36.35 4.00
1991 3042 3.156157 ACGTGACGTTTTGTTCCCA 57.844 47.368 4.10 0.00 36.35 4.37
2002 3053 7.067728 TCGATAGTATTCAAGATAACGTGACG 58.932 38.462 2.24 2.24 34.11 4.35
2003 3054 8.951954 ATCGATAGTATTCAAGATAACGTGAC 57.048 34.615 0.00 0.00 34.11 3.67
2026 3077 9.678941 TTTCTCTATGTACACGATCATGTAATC 57.321 33.333 2.70 0.00 36.83 1.75
2033 3084 9.734984 TCCTATATTTCTCTATGTACACGATCA 57.265 33.333 0.00 0.00 0.00 2.92
2046 3164 7.549141 ACCCCTGACTAATCCTATATTTCTCT 58.451 38.462 0.00 0.00 0.00 3.10
2047 3165 7.800300 ACCCCTGACTAATCCTATATTTCTC 57.200 40.000 0.00 0.00 0.00 2.87
2048 3166 9.860393 AATACCCCTGACTAATCCTATATTTCT 57.140 33.333 0.00 0.00 0.00 2.52
2053 3171 7.123560 TCCAATACCCCTGACTAATCCTATA 57.876 40.000 0.00 0.00 0.00 1.31
2054 3172 5.989717 TCCAATACCCCTGACTAATCCTAT 58.010 41.667 0.00 0.00 0.00 2.57
2056 3199 4.295905 TCCAATACCCCTGACTAATCCT 57.704 45.455 0.00 0.00 0.00 3.24
2060 3203 4.431378 TGACTTCCAATACCCCTGACTAA 58.569 43.478 0.00 0.00 0.00 2.24
2064 3207 4.946160 AATTGACTTCCAATACCCCTGA 57.054 40.909 0.00 0.00 44.28 3.86
2065 3208 4.887655 GGTAATTGACTTCCAATACCCCTG 59.112 45.833 0.00 0.00 44.28 4.45
2072 3397 3.080300 TGCGGGTAATTGACTTCCAAT 57.920 42.857 0.00 0.00 46.86 3.16
2093 3418 3.531934 GCCATCAGCTGCCTTATTTTT 57.468 42.857 9.47 0.00 38.99 1.94
2118 3489 7.068839 ACAAAGAGATACGAGATAATGGTGAGT 59.931 37.037 0.00 0.00 0.00 3.41
2142 3513 5.640147 AGTTGGGTCATCTATTTTGGAACA 58.360 37.500 0.00 0.00 0.00 3.18
2143 3514 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2144 3515 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2145 3516 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2146 3517 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2147 3518 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2148 3519 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2149 3520 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2150 3521 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2151 3522 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2152 3523 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2153 3524 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2154 3525 7.227910 TCAAAGTTAGTACAAAGTTGGGTCATC 59.772 37.037 0.00 0.00 0.00 2.92
2155 3526 7.012989 GTCAAAGTTAGTACAAAGTTGGGTCAT 59.987 37.037 0.00 0.00 0.00 3.06
2156 3527 6.316890 GTCAAAGTTAGTACAAAGTTGGGTCA 59.683 38.462 0.00 0.00 0.00 4.02
2157 3528 6.238566 GGTCAAAGTTAGTACAAAGTTGGGTC 60.239 42.308 0.00 0.00 0.00 4.46
2158 3529 5.591472 GGTCAAAGTTAGTACAAAGTTGGGT 59.409 40.000 0.00 0.00 0.00 4.51
2159 3530 5.009310 GGGTCAAAGTTAGTACAAAGTTGGG 59.991 44.000 0.00 0.00 0.00 4.12
2160 3531 5.591067 TGGGTCAAAGTTAGTACAAAGTTGG 59.409 40.000 0.00 0.00 0.00 3.77
2161 3532 6.687081 TGGGTCAAAGTTAGTACAAAGTTG 57.313 37.500 0.00 0.00 0.00 3.16
2162 3533 6.888088 AGTTGGGTCAAAGTTAGTACAAAGTT 59.112 34.615 0.00 0.00 0.00 2.66
2163 3534 6.420638 AGTTGGGTCAAAGTTAGTACAAAGT 58.579 36.000 0.00 0.00 0.00 2.66
2164 3535 6.937436 AGTTGGGTCAAAGTTAGTACAAAG 57.063 37.500 0.00 0.00 0.00 2.77
2165 3536 6.660094 ACAAGTTGGGTCAAAGTTAGTACAAA 59.340 34.615 7.96 0.00 0.00 2.83
2166 3537 6.181908 ACAAGTTGGGTCAAAGTTAGTACAA 58.818 36.000 7.96 0.00 0.00 2.41
2167 3538 5.747342 ACAAGTTGGGTCAAAGTTAGTACA 58.253 37.500 7.96 0.00 0.00 2.90
2168 3539 7.974482 ATACAAGTTGGGTCAAAGTTAGTAC 57.026 36.000 7.96 0.00 0.00 2.73
2170 3541 8.983702 TTAATACAAGTTGGGTCAAAGTTAGT 57.016 30.769 7.96 0.00 0.00 2.24
2171 3542 9.893305 CTTTAATACAAGTTGGGTCAAAGTTAG 57.107 33.333 7.96 0.00 0.00 2.34
2172 3543 9.411189 ACTTTAATACAAGTTGGGTCAAAGTTA 57.589 29.630 16.03 0.00 32.81 2.24
2173 3544 8.301252 ACTTTAATACAAGTTGGGTCAAAGTT 57.699 30.769 16.03 6.74 32.81 2.66
2174 3545 7.891498 ACTTTAATACAAGTTGGGTCAAAGT 57.109 32.000 16.03 16.03 32.81 2.66
2175 3546 9.893305 CTAACTTTAATACAAGTTGGGTCAAAG 57.107 33.333 7.96 12.64 44.92 2.77
2176 3547 9.411189 ACTAACTTTAATACAAGTTGGGTCAAA 57.589 29.630 7.96 1.93 45.09 2.69
2177 3548 8.983702 ACTAACTTTAATACAAGTTGGGTCAA 57.016 30.769 7.96 0.00 45.09 3.18
2178 3549 9.492973 GTACTAACTTTAATACAAGTTGGGTCA 57.507 33.333 7.96 0.00 45.09 4.02
2179 3550 9.492973 TGTACTAACTTTAATACAAGTTGGGTC 57.507 33.333 7.96 6.89 45.09 4.46
2180 3551 9.850198 TTGTACTAACTTTAATACAAGTTGGGT 57.150 29.630 7.96 11.02 45.09 4.51
2188 3559 9.850198 ACCCAACTTTGTACTAACTTTAATACA 57.150 29.630 0.00 0.00 0.00 2.29
2191 3562 8.983702 TGACCCAACTTTGTACTAACTTTAAT 57.016 30.769 0.00 0.00 0.00 1.40
2192 3563 8.983702 ATGACCCAACTTTGTACTAACTTTAA 57.016 30.769 0.00 0.00 0.00 1.52
2193 3564 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
2194 3565 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2195 3566 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2196 3567 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2197 3568 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2198 3569 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2199 3570 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2200 3571 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2201 3572 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2202 3573 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2203 3574 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2204 3575 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2205 3576 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2206 3577 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2207 3578 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2208 3579 4.698304 TCGTTCCAAAATAGATGACCCAAC 59.302 41.667 0.00 0.00 0.00 3.77
2209 3580 4.912586 TCGTTCCAAAATAGATGACCCAA 58.087 39.130 0.00 0.00 0.00 4.12
2210 3581 4.561500 TCGTTCCAAAATAGATGACCCA 57.438 40.909 0.00 0.00 0.00 4.51
2211 3582 4.335594 CCTTCGTTCCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
2212 3583 4.335594 CCCTTCGTTCCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
2213 3584 5.183228 TCCCTTCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2214 3585 5.045869 ACTCCCTTCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2215 3586 5.186198 ACTCCCTTCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2216 3587 5.437191 ACTCCCTTCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2217 3588 4.903045 ACTCCCTTCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2218 3589 5.731591 AGTACTCCCTTCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
2219 3590 5.750352 AGTACTCCCTTCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2220 3591 4.635699 AGTACTCCCTTCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2221 3592 4.590222 AGTAGTACTCCCTTCGTTCCAAAA 59.410 41.667 0.00 0.00 0.00 2.44
2222 3593 4.154942 AGTAGTACTCCCTTCGTTCCAAA 58.845 43.478 0.00 0.00 0.00 3.28
2223 3594 3.760684 GAGTAGTACTCCCTTCGTTCCAA 59.239 47.826 18.10 0.00 39.28 3.53
2224 3595 3.009916 AGAGTAGTACTCCCTTCGTTCCA 59.990 47.826 23.82 0.00 46.18 3.53
2225 3596 3.619419 AGAGTAGTACTCCCTTCGTTCC 58.381 50.000 23.82 0.00 46.18 3.62
2226 3597 5.821995 ACATAGAGTAGTACTCCCTTCGTTC 59.178 44.000 23.82 0.00 46.18 3.95
2227 3598 5.753716 ACATAGAGTAGTACTCCCTTCGTT 58.246 41.667 23.82 8.60 46.18 3.85
2228 3599 5.370875 ACATAGAGTAGTACTCCCTTCGT 57.629 43.478 23.82 12.86 46.18 3.85
2252 3623 0.946221 CAGGCACTCGTGGAGACAAC 60.946 60.000 0.00 0.00 38.99 3.32
2253 3624 1.112916 TCAGGCACTCGTGGAGACAA 61.113 55.000 0.00 0.00 38.99 3.18
2263 3634 5.050702 GCGATTAAGTCTTATTCAGGCACTC 60.051 44.000 12.66 0.00 34.60 3.51
2265 3636 4.570772 TGCGATTAAGTCTTATTCAGGCAC 59.429 41.667 12.66 1.18 0.00 5.01
2285 3656 9.982291 GGGTAACAATACAACAATATATATGCG 57.018 33.333 0.00 0.00 39.74 4.73
2290 3661 8.955794 AGGGAGGGTAACAATACAACAATATAT 58.044 33.333 0.00 0.00 39.74 0.86
2292 3663 7.220890 AGGGAGGGTAACAATACAACAATAT 57.779 36.000 0.00 0.00 39.74 1.28
2293 3664 6.645884 AGGGAGGGTAACAATACAACAATA 57.354 37.500 0.00 0.00 39.74 1.90
2294 3665 5.530176 AGGGAGGGTAACAATACAACAAT 57.470 39.130 0.00 0.00 39.74 2.71
2296 3667 4.600111 AGAAGGGAGGGTAACAATACAACA 59.400 41.667 0.00 0.00 39.74 3.33
2297 3668 5.175388 AGAAGGGAGGGTAACAATACAAC 57.825 43.478 0.00 0.00 39.74 3.32
2298 3669 4.847512 TGAGAAGGGAGGGTAACAATACAA 59.152 41.667 0.00 0.00 39.74 2.41
2300 3671 5.431179 TTGAGAAGGGAGGGTAACAATAC 57.569 43.478 0.00 0.00 39.74 1.89
2302 3673 6.848562 ATATTGAGAAGGGAGGGTAACAAT 57.151 37.500 0.00 0.00 39.74 2.71
2303 3674 6.906901 ACTATATTGAGAAGGGAGGGTAACAA 59.093 38.462 0.00 0.00 39.74 2.83
2304 3675 6.449956 ACTATATTGAGAAGGGAGGGTAACA 58.550 40.000 0.00 0.00 39.74 2.41
2305 3676 6.997942 ACTATATTGAGAAGGGAGGGTAAC 57.002 41.667 0.00 0.00 0.00 2.50
2306 3677 9.155785 CTAAACTATATTGAGAAGGGAGGGTAA 57.844 37.037 0.00 0.00 0.00 2.85
2307 3678 8.294690 ACTAAACTATATTGAGAAGGGAGGGTA 58.705 37.037 0.00 0.00 0.00 3.69
2308 3679 7.140304 ACTAAACTATATTGAGAAGGGAGGGT 58.860 38.462 0.00 0.00 0.00 4.34
2313 3701 6.931840 GCTGGACTAAACTATATTGAGAAGGG 59.068 42.308 0.00 0.00 0.00 3.95
2316 3704 8.540388 ACTTGCTGGACTAAACTATATTGAGAA 58.460 33.333 0.00 0.00 0.00 2.87
2318 3706 7.254590 GCACTTGCTGGACTAAACTATATTGAG 60.255 40.741 0.00 0.00 38.21 3.02
2319 3707 6.538742 GCACTTGCTGGACTAAACTATATTGA 59.461 38.462 0.00 0.00 38.21 2.57
2327 3715 3.366374 GGAATGCACTTGCTGGACTAAAC 60.366 47.826 2.33 0.00 42.66 2.01
2358 3759 5.584442 GCAAACTGCATGATTGTGATATGA 58.416 37.500 0.00 0.00 44.26 2.15
2400 3801 6.267242 TGGCTGGCATTTGCTAAAATATATGA 59.733 34.615 0.00 0.00 41.70 2.15
2419 3821 2.674380 GGACAAGGCAGTGGCTGG 60.674 66.667 21.35 20.23 38.81 4.85
2431 3833 3.011566 TGAAAGTTGGCTCTTGGACAA 57.988 42.857 0.00 0.00 41.27 3.18
2432 3834 2.727123 TGAAAGTTGGCTCTTGGACA 57.273 45.000 0.00 0.00 0.00 4.02
2497 3900 2.758423 GGCGAAAATAGGGTTGGTGAAT 59.242 45.455 0.00 0.00 0.00 2.57
2507 3910 1.017387 GCACTGGAGGCGAAAATAGG 58.983 55.000 0.00 0.00 0.00 2.57
2522 3999 4.552365 ACACACTGCTGGCGCACT 62.552 61.111 10.83 0.00 42.25 4.40
2645 4156 4.745783 GCACTAGGCCTAACCGGATTATTT 60.746 45.833 14.85 0.00 46.52 1.40
2648 4159 1.690352 GCACTAGGCCTAACCGGATTA 59.310 52.381 14.85 2.05 46.52 1.75
2650 4161 0.398664 AGCACTAGGCCTAACCGGAT 60.399 55.000 14.85 0.00 46.50 4.18
2651 4162 0.259647 TAGCACTAGGCCTAACCGGA 59.740 55.000 14.85 0.00 46.50 5.14
2655 4166 6.408107 AAGATACTTAGCACTAGGCCTAAC 57.592 41.667 14.85 6.47 46.50 2.34
2672 4184 8.989980 CGGAGGACTAATTTCCATTTAAGATAC 58.010 37.037 0.00 0.00 38.25 2.24
2834 4420 3.515286 CCAGAAGGCATGCTGCGG 61.515 66.667 18.92 7.66 46.21 5.69
2877 4464 1.081892 TCGTGCTGGTAGTAGTCGAC 58.918 55.000 7.70 7.70 0.00 4.20
3069 5151 4.131088 GAGCCTCGGGTCGGTGAC 62.131 72.222 0.00 0.00 32.85 3.67
3072 5154 3.382832 CTTGAGCCTCGGGTCGGT 61.383 66.667 10.26 0.00 44.68 4.69
3073 5155 4.821589 GCTTGAGCCTCGGGTCGG 62.822 72.222 10.26 7.02 44.68 4.79
3140 5873 1.134310 ACCTTGTCGTCCTCCGTTTTT 60.134 47.619 0.00 0.00 37.94 1.94
3212 7105 1.653151 GCTTGAACCGTATGAGGTCC 58.347 55.000 0.00 0.00 45.21 4.46
3294 7269 2.372172 TCTTGGGGAACTTGAGGAAGAC 59.628 50.000 0.00 0.00 32.98 3.01
3512 7574 1.635487 TCCTTGGGGAACATCTTCCTG 59.365 52.381 0.00 0.00 45.11 3.86
3566 7628 2.281484 CGGTTGGACCACCACCTG 60.281 66.667 12.58 3.97 46.80 4.00
3712 7787 8.361889 TGAATCACATCACAGAAAAACATCAAT 58.638 29.630 0.00 0.00 0.00 2.57
3726 7801 1.673168 GGGAGCCTGAATCACATCAC 58.327 55.000 0.00 0.00 0.00 3.06
3733 7808 4.225497 CCAACGGGAGCCTGAATC 57.775 61.111 1.59 0.00 35.59 2.52
4082 8159 9.289782 GAGATTAGTCATGCTTTTATGGGTTAT 57.710 33.333 0.00 0.00 0.00 1.89
4190 8267 2.069273 CTGTTTTAGCTGGTGACTCCG 58.931 52.381 0.00 0.00 39.52 4.63
4516 8593 3.873910 ACTGCCGTTTCATATACTTGCT 58.126 40.909 0.00 0.00 0.00 3.91
4517 8594 4.588278 GAACTGCCGTTTCATATACTTGC 58.412 43.478 0.00 0.00 32.39 4.01
4531 8608 1.187271 CGATTATTCGTCGAACTGCCG 59.813 52.381 10.39 8.33 41.40 5.69
4551 8628 6.073222 TCGAGTTTCAGAAAGCAATTAACCTC 60.073 38.462 0.00 0.00 0.00 3.85
4554 8631 6.792726 GTCTCGAGTTTCAGAAAGCAATTAAC 59.207 38.462 13.13 0.00 0.00 2.01
4632 8710 4.827284 TGGTTGGTTTTCTCCTGATTTCTC 59.173 41.667 0.00 0.00 0.00 2.87
4633 8711 4.803452 TGGTTGGTTTTCTCCTGATTTCT 58.197 39.130 0.00 0.00 0.00 2.52
4634 8712 5.163457 TGTTGGTTGGTTTTCTCCTGATTTC 60.163 40.000 0.00 0.00 0.00 2.17
4645 8723 2.741145 TGCTAGGTGTTGGTTGGTTTT 58.259 42.857 0.00 0.00 0.00 2.43
4649 8727 2.198827 TCATGCTAGGTGTTGGTTGG 57.801 50.000 0.00 0.00 0.00 3.77
4651 8729 3.719268 TCATCATGCTAGGTGTTGGTT 57.281 42.857 0.00 0.00 0.00 3.67
4710 8788 7.825761 TGCTATAATACAATCTGTGCATGCTAT 59.174 33.333 20.33 6.11 0.00 2.97
4743 8821 5.631481 GCTTAATACCAATCTTCCTGGACCA 60.631 44.000 0.00 0.00 37.40 4.02
4748 8826 7.572523 TTCATGCTTAATACCAATCTTCCTG 57.427 36.000 0.00 0.00 0.00 3.86
4887 8965 3.308904 GGGACTACAAAGGGGCTTGTTAT 60.309 47.826 0.00 0.00 40.08 1.89
4903 8981 0.745845 GGCTCTCGTACGTGGGACTA 60.746 60.000 20.69 0.00 0.00 2.59
4925 9003 4.953579 AGAGATAGAGACCAAGGACTTGAC 59.046 45.833 13.35 7.23 42.93 3.18
5008 9086 2.483889 GGAATCATTGGGAGACGGAGAC 60.484 54.545 0.00 0.00 0.00 3.36
5013 9091 0.546122 TGGGGAATCATTGGGAGACG 59.454 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.