Multiple sequence alignment - TraesCS7D01G524500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G524500 chr7D 100.000 2271 0 0 1 2271 620473027 620475297 0.000000e+00 4194
1 TraesCS7D01G524500 chr7D 94.083 169 10 0 578 746 192936188 192936020 8.050000e-65 257
2 TraesCS7D01G524500 chr7B 94.585 831 28 4 1456 2269 716131779 716132609 0.000000e+00 1269
3 TraesCS7D01G524500 chr7B 91.577 558 41 6 883 1435 668983060 668982504 0.000000e+00 765
4 TraesCS7D01G524500 chr7B 87.868 577 42 9 8 583 668983693 668983144 0.000000e+00 652
5 TraesCS7D01G524500 chr3D 98.846 693 7 1 743 1435 275776290 275775599 0.000000e+00 1234
6 TraesCS7D01G524500 chr3D 98.505 535 8 0 49 583 275776825 275776291 0.000000e+00 944
7 TraesCS7D01G524500 chr3D 91.803 183 11 4 582 761 7607558 7607377 3.740000e-63 252
8 TraesCS7D01G524500 chr6B 88.848 807 66 7 1437 2219 718274593 718275399 0.000000e+00 970
9 TraesCS7D01G524500 chr7A 92.833 586 30 6 9 583 59603777 59603193 0.000000e+00 839
10 TraesCS7D01G524500 chr7A 91.695 590 37 6 5 583 622333016 622333604 0.000000e+00 808
11 TraesCS7D01G524500 chr7A 93.117 494 30 3 941 1433 622333614 622334104 0.000000e+00 721
12 TraesCS7D01G524500 chr7A 93.595 484 28 3 953 1435 59602807 59602326 0.000000e+00 719
13 TraesCS7D01G524500 chr7A 86.391 507 56 11 937 1438 648509185 648508687 1.980000e-150 542
14 TraesCS7D01G524500 chr7A 95.205 146 6 1 744 888 59603195 59603050 1.750000e-56 230
15 TraesCS7D01G524500 chr7A 86.111 108 7 6 744 843 648509558 648509451 2.380000e-20 110
16 TraesCS7D01G524500 chr4A 92.020 589 34 5 6 583 596981398 596980812 0.000000e+00 815
17 TraesCS7D01G524500 chr4A 91.156 588 40 6 7 583 423444669 423444083 0.000000e+00 787
18 TraesCS7D01G524500 chr4A 93.750 496 27 4 941 1435 596980802 596980310 0.000000e+00 741
19 TraesCS7D01G524500 chr4A 91.006 467 40 2 85 551 691555258 691554794 1.480000e-176 628
20 TraesCS7D01G524500 chr4A 88.911 496 25 10 941 1435 423444073 423443607 3.250000e-163 584
21 TraesCS7D01G524500 chr5A 91.823 587 36 6 8 583 595402350 595401765 0.000000e+00 808
22 TraesCS7D01G524500 chr5A 93.750 496 27 4 941 1435 595401755 595401263 0.000000e+00 741
23 TraesCS7D01G524500 chr5A 87.288 236 28 2 767 1001 487757889 487758123 3.720000e-68 268
24 TraesCS7D01G524500 chr5A 87.288 236 28 2 767 1001 487759320 487759554 3.720000e-68 268
25 TraesCS7D01G524500 chr5A 87.288 236 28 2 767 1001 487760752 487760986 3.720000e-68 268
26 TraesCS7D01G524500 chr5A 87.288 236 28 2 767 1001 487762183 487762417 3.720000e-68 268
27 TraesCS7D01G524500 chr5A 92.896 183 10 3 582 763 290391697 290391877 1.730000e-66 263
28 TraesCS7D01G524500 chr5D 90.020 491 39 2 1437 1926 528220744 528221225 5.330000e-176 627
29 TraesCS7D01G524500 chr1D 86.931 505 57 3 81 585 3956959 3956464 1.970000e-155 558
30 TraesCS7D01G524500 chr1D 92.614 176 10 3 581 756 338558752 338558580 1.350000e-62 250
31 TraesCS7D01G524500 chr3A 76.694 605 109 28 839 1435 681292468 681291888 7.880000e-80 307
32 TraesCS7D01G524500 chr3A 94.643 168 9 0 582 749 744921111 744920944 6.220000e-66 261
33 TraesCS7D01G524500 chr4B 87.288 236 28 2 767 1001 582558506 582558740 3.720000e-68 268
34 TraesCS7D01G524500 chr2D 95.783 166 7 0 582 747 420168247 420168082 3.720000e-68 268
35 TraesCS7D01G524500 chr2D 86.813 182 22 1 565 746 9871225 9871404 3.830000e-48 202
36 TraesCS7D01G524500 chr2D 82.979 188 23 6 565 747 362930787 362930970 6.490000e-36 161
37 TraesCS7D01G524500 chr1B 87.234 235 26 4 769 1001 48484264 48484496 4.810000e-67 265
38 TraesCS7D01G524500 chr1B 94.479 163 9 0 593 755 31742287 31742125 3.740000e-63 252
39 TraesCS7D01G524500 chr2B 92.265 181 12 2 582 762 736423916 736423738 2.890000e-64 255
40 TraesCS7D01G524500 chr2B 92.135 178 14 0 578 755 342244558 342244381 3.740000e-63 252
41 TraesCS7D01G524500 chr2B 87.500 184 21 2 567 749 639963312 639963130 6.360000e-51 211
42 TraesCS7D01G524500 chr3B 79.487 156 24 7 567 719 15997197 15997047 1.110000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G524500 chr7D 620473027 620475297 2270 False 4194.0 4194 100.000000 1 2271 1 chr7D.!!$F1 2270
1 TraesCS7D01G524500 chr7B 716131779 716132609 830 False 1269.0 1269 94.585000 1456 2269 1 chr7B.!!$F1 813
2 TraesCS7D01G524500 chr7B 668982504 668983693 1189 True 708.5 765 89.722500 8 1435 2 chr7B.!!$R1 1427
3 TraesCS7D01G524500 chr3D 275775599 275776825 1226 True 1089.0 1234 98.675500 49 1435 2 chr3D.!!$R2 1386
4 TraesCS7D01G524500 chr6B 718274593 718275399 806 False 970.0 970 88.848000 1437 2219 1 chr6B.!!$F1 782
5 TraesCS7D01G524500 chr7A 622333016 622334104 1088 False 764.5 808 92.406000 5 1433 2 chr7A.!!$F1 1428
6 TraesCS7D01G524500 chr7A 59602326 59603777 1451 True 596.0 839 93.877667 9 1435 3 chr7A.!!$R1 1426
7 TraesCS7D01G524500 chr7A 648508687 648509558 871 True 326.0 542 86.251000 744 1438 2 chr7A.!!$R2 694
8 TraesCS7D01G524500 chr4A 596980310 596981398 1088 True 778.0 815 92.885000 6 1435 2 chr4A.!!$R3 1429
9 TraesCS7D01G524500 chr4A 423443607 423444669 1062 True 685.5 787 90.033500 7 1435 2 chr4A.!!$R2 1428
10 TraesCS7D01G524500 chr5A 595401263 595402350 1087 True 774.5 808 92.786500 8 1435 2 chr5A.!!$R1 1427
11 TraesCS7D01G524500 chr5A 487757889 487762417 4528 False 268.0 268 87.288000 767 1001 4 chr5A.!!$F2 234
12 TraesCS7D01G524500 chr3A 681291888 681292468 580 True 307.0 307 76.694000 839 1435 1 chr3A.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 163 2.16103 ACGTATCGAGGCCTTCCTATC 58.839 52.381 6.77 0.0 44.46 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 4291 0.039708 GCCACTTCAGCAGCAACTTC 60.04 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 163 2.161030 ACGTATCGAGGCCTTCCTATC 58.839 52.381 6.77 0.00 44.46 2.08
334 347 3.057104 TCCTGTTCGCGATAAGAACTTGA 60.057 43.478 10.88 2.82 45.84 3.02
584 597 5.060450 GATGCCGACTCATCCAAGGTACT 62.060 52.174 0.00 0.00 37.67 2.73
610 623 9.753674 TTCCTTCATTCCTAAATATTTGTCTGT 57.246 29.630 11.05 0.00 0.00 3.41
611 624 9.396022 TCCTTCATTCCTAAATATTTGTCTGTC 57.604 33.333 11.05 0.00 0.00 3.51
612 625 8.624776 CCTTCATTCCTAAATATTTGTCTGTCC 58.375 37.037 11.05 0.00 0.00 4.02
613 626 9.177608 CTTCATTCCTAAATATTTGTCTGTCCA 57.822 33.333 11.05 0.00 0.00 4.02
615 628 8.548025 TCATTCCTAAATATTTGTCTGTCCAGA 58.452 33.333 11.05 0.00 34.56 3.86
616 629 8.834465 CATTCCTAAATATTTGTCTGTCCAGAG 58.166 37.037 11.05 0.00 38.27 3.35
618 631 8.324191 TCCTAAATATTTGTCTGTCCAGAGAT 57.676 34.615 11.05 0.00 38.27 2.75
620 633 9.401058 CCTAAATATTTGTCTGTCCAGAGATTT 57.599 33.333 11.05 0.00 38.27 2.17
623 636 8.868522 AATATTTGTCTGTCCAGAGATTTCAA 57.131 30.769 0.00 0.00 38.27 2.69
627 640 7.912056 TTGTCTGTCCAGAGATTTCAATAAG 57.088 36.000 0.00 0.00 38.27 1.73
629 642 6.875726 TGTCTGTCCAGAGATTTCAATAAGTG 59.124 38.462 0.00 0.00 38.27 3.16
630 643 7.099764 GTCTGTCCAGAGATTTCAATAAGTGA 58.900 38.462 0.00 0.00 38.27 3.41
631 644 7.064016 GTCTGTCCAGAGATTTCAATAAGTGAC 59.936 40.741 0.00 0.00 38.27 3.67
632 645 7.009179 TGTCCAGAGATTTCAATAAGTGACT 57.991 36.000 0.00 0.00 35.39 3.41
633 646 8.134202 TGTCCAGAGATTTCAATAAGTGACTA 57.866 34.615 0.00 0.00 35.39 2.59
634 647 8.035394 TGTCCAGAGATTTCAATAAGTGACTAC 58.965 37.037 0.00 0.00 35.39 2.73
640 653 8.873215 AGATTTCAATAAGTGACTACATACGG 57.127 34.615 0.00 0.00 35.39 4.02
641 654 8.692710 AGATTTCAATAAGTGACTACATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
642 655 8.873215 ATTTCAATAAGTGACTACATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
643 656 5.828747 TCAATAAGTGACTACATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
644 657 5.358725 TCAATAAGTGACTACATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
645 658 5.847111 ATAAGTGACTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
647 660 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
648 661 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
649 662 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
650 663 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
651 664 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
652 665 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
654 667 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
655 668 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
656 669 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
658 671 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
659 672 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
660 673 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
662 675 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
676 689 8.491134 AGTGAATCTACACTCTAGAGTATGTCT 58.509 37.037 24.75 8.45 46.36 3.41
677 690 9.767228 GTGAATCTACACTCTAGAGTATGTCTA 57.233 37.037 24.75 11.44 40.20 2.59
678 691 9.767228 TGAATCTACACTCTAGAGTATGTCTAC 57.233 37.037 24.75 14.29 40.20 2.59
679 692 9.767228 GAATCTACACTCTAGAGTATGTCTACA 57.233 37.037 24.75 4.60 40.20 2.74
695 708 7.956328 ATGTCTACATACATCCGTATATGGT 57.044 36.000 10.85 0.00 35.08 3.55
697 710 8.502105 TGTCTACATACATCCGTATATGGTAG 57.498 38.462 10.85 7.27 36.11 3.18
698 711 8.105197 TGTCTACATACATCCGTATATGGTAGT 58.895 37.037 10.85 12.22 36.11 2.73
700 713 6.770746 ACATACATCCGTATATGGTAGTCC 57.229 41.667 10.85 0.00 36.11 3.85
701 714 6.250711 ACATACATCCGTATATGGTAGTCCA 58.749 40.000 10.85 0.00 41.12 4.02
718 731 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
722 735 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
1390 3765 1.706305 TGTTTATAATAGGGGCCCCGG 59.294 52.381 35.78 0.00 41.95 5.73
1435 3810 1.627297 AAATCTCAGGACCGGCCCTC 61.627 60.000 6.23 0.00 37.37 4.30
1559 3937 7.264294 ACAATCCTATTTCTTCTCCTCTTGT 57.736 36.000 0.00 0.00 0.00 3.16
1699 4228 4.705507 AGGTTCGCTTCAAGAGTATAGTCA 59.294 41.667 10.21 0.00 0.00 3.41
1728 4267 6.212993 TGATCTAGAGGCTGCATCTGAATATT 59.787 38.462 25.39 7.08 0.00 1.28
1772 4311 0.752743 AAGTTGCTGCTGAAGTGGCA 60.753 50.000 0.00 0.00 38.10 4.92
1791 4331 3.002553 GGCATTTTCTTTTTGCACCACAG 59.997 43.478 0.00 0.00 38.12 3.66
2131 4679 1.283321 GGTCCAGAAAAGCCCAGATCT 59.717 52.381 0.00 0.00 0.00 2.75
2132 4680 2.363683 GTCCAGAAAAGCCCAGATCTG 58.636 52.381 16.24 16.24 39.16 2.90
2133 4681 1.101331 CCAGAAAAGCCCAGATCTGC 58.899 55.000 17.76 7.09 38.34 4.26
2269 4830 1.659954 GATGAGCTCGCGTGCTAGG 60.660 63.158 32.83 6.62 44.17 3.02
2270 4831 3.781770 ATGAGCTCGCGTGCTAGGC 62.782 63.158 32.83 21.65 44.17 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
334 347 3.795688 TGAAGAAAATGAGCAGGGACT 57.204 42.857 0.00 0.00 43.88 3.85
584 597 9.753674 ACAGACAAATATTTAGGAATGAAGGAA 57.246 29.630 0.00 0.00 0.00 3.36
586 599 8.624776 GGACAGACAAATATTTAGGAATGAAGG 58.375 37.037 0.00 0.00 0.00 3.46
587 600 9.177608 TGGACAGACAAATATTTAGGAATGAAG 57.822 33.333 0.00 0.00 0.00 3.02
588 601 9.177608 CTGGACAGACAAATATTTAGGAATGAA 57.822 33.333 0.00 0.00 0.00 2.57
589 602 8.548025 TCTGGACAGACAAATATTTAGGAATGA 58.452 33.333 0.00 0.00 31.41 2.57
590 603 8.737168 TCTGGACAGACAAATATTTAGGAATG 57.263 34.615 0.00 0.00 31.41 2.67
591 604 8.772250 TCTCTGGACAGACAAATATTTAGGAAT 58.228 33.333 0.00 0.00 33.22 3.01
592 605 8.146053 TCTCTGGACAGACAAATATTTAGGAA 57.854 34.615 0.00 0.00 33.22 3.36
594 607 8.970859 AATCTCTGGACAGACAAATATTTAGG 57.029 34.615 0.00 0.00 33.22 2.69
596 609 9.958180 TGAAATCTCTGGACAGACAAATATTTA 57.042 29.630 0.00 0.00 33.22 1.40
597 610 8.868522 TGAAATCTCTGGACAGACAAATATTT 57.131 30.769 0.00 0.00 33.22 1.40
600 613 9.958180 TTATTGAAATCTCTGGACAGACAAATA 57.042 29.630 0.00 0.00 33.22 1.40
601 614 8.868522 TTATTGAAATCTCTGGACAGACAAAT 57.131 30.769 0.00 0.00 33.22 2.32
602 615 7.939039 ACTTATTGAAATCTCTGGACAGACAAA 59.061 33.333 0.00 0.00 33.22 2.83
603 616 7.388776 CACTTATTGAAATCTCTGGACAGACAA 59.611 37.037 0.00 1.78 33.22 3.18
604 617 6.875726 CACTTATTGAAATCTCTGGACAGACA 59.124 38.462 0.00 0.00 33.22 3.41
605 618 7.064016 GTCACTTATTGAAATCTCTGGACAGAC 59.936 40.741 0.00 0.00 35.39 3.51
607 620 7.102346 AGTCACTTATTGAAATCTCTGGACAG 58.898 38.462 0.00 0.00 35.39 3.51
609 622 8.035394 TGTAGTCACTTATTGAAATCTCTGGAC 58.965 37.037 0.00 0.00 35.39 4.02
610 623 8.134202 TGTAGTCACTTATTGAAATCTCTGGA 57.866 34.615 0.00 0.00 35.39 3.86
611 624 8.954950 ATGTAGTCACTTATTGAAATCTCTGG 57.045 34.615 0.00 0.00 35.39 3.86
613 626 9.737427 CGTATGTAGTCACTTATTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
615 628 8.692710 TCCGTATGTAGTCACTTATTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
616 629 8.867112 TCCGTATGTAGTCACTTATTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
618 631 6.755141 GCTCCGTATGTAGTCACTTATTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
620 633 5.358725 TGCTCCGTATGTAGTCACTTATTGA 59.641 40.000 0.00 0.00 0.00 2.57
621 634 5.588240 TGCTCCGTATGTAGTCACTTATTG 58.412 41.667 0.00 0.00 0.00 1.90
623 636 5.847111 TTGCTCCGTATGTAGTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
625 638 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
627 640 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
629 642 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
630 643 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
631 644 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
632 645 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
633 646 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
634 647 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
638 651 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
640 653 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
651 664 8.671384 AGACATACTCTAGAGTGTAGATTCAC 57.329 38.462 31.47 14.19 42.52 3.18
652 665 9.767228 GTAGACATACTCTAGAGTGTAGATTCA 57.233 37.037 31.47 12.36 42.52 2.57
671 684 7.956328 ACCATATACGGATGTATGTAGACAT 57.044 36.000 0.00 0.08 41.37 3.06
672 685 8.105197 ACTACCATATACGGATGTATGTAGACA 58.895 37.037 15.71 0.00 41.37 3.41
674 687 7.772292 GGACTACCATATACGGATGTATGTAGA 59.228 40.741 15.71 0.00 37.31 2.59
676 689 7.404481 TGGACTACCATATACGGATGTATGTA 58.596 38.462 0.00 0.00 40.25 2.29
677 690 6.250711 TGGACTACCATATACGGATGTATGT 58.749 40.000 0.00 0.00 40.25 2.29
678 691 6.769134 TGGACTACCATATACGGATGTATG 57.231 41.667 0.00 0.00 40.25 2.39
696 709 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
697 710 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
714 727 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
716 729 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
717 730 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
718 731 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
719 732 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
720 733 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
722 735 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
724 737 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
725 738 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
728 741 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
729 742 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
731 744 6.854091 AATATAATCTACTCCCTCCGTTCC 57.146 41.667 0.00 0.00 0.00 3.62
733 746 7.833183 ACGATAATATAATCTACTCCCTCCGTT 59.167 37.037 0.00 0.00 0.00 4.44
735 748 7.804843 ACGATAATATAATCTACTCCCTCCG 57.195 40.000 0.00 0.00 0.00 4.63
853 1722 5.578157 AACACACTAACATTAGTTCCCCT 57.422 39.130 1.42 0.00 41.82 4.79
1390 3765 0.736636 CCCGGGGCGAAACTAAATTC 59.263 55.000 14.71 0.00 0.00 2.17
1435 3810 6.867662 AATATCTTTCAATCTAGTTGCCCG 57.132 37.500 0.00 0.00 37.74 6.13
1699 4228 3.647113 AGATGCAGCCTCTAGATCAACAT 59.353 43.478 0.00 0.00 0.00 2.71
1752 4291 0.039708 GCCACTTCAGCAGCAACTTC 60.040 55.000 0.00 0.00 0.00 3.01
1772 4311 5.936956 TCAAACTGTGGTGCAAAAAGAAAAT 59.063 32.000 0.00 0.00 0.00 1.82
1791 4331 3.123621 CCATCTTGCACGTACTCTCAAAC 59.876 47.826 0.00 0.00 0.00 2.93
2044 4592 1.129064 GAACGTCTCGGTCTCTGTCTC 59.871 57.143 0.00 0.00 40.75 3.36
2054 4602 4.243270 AGTCCTATTTTTGAACGTCTCGG 58.757 43.478 0.00 0.00 0.00 4.63
2164 4725 7.205297 TCCTATGGAGCTAACGTTAATTACAC 58.795 38.462 9.68 0.00 0.00 2.90
2225 4786 3.839293 CTCCTGTCTCAACGAGTAAAGG 58.161 50.000 0.00 0.00 0.00 3.11
2237 4798 2.093553 AGCTCATCTTTGCTCCTGTCTC 60.094 50.000 0.00 0.00 33.90 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.