Multiple sequence alignment - TraesCS7D01G524100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G524100 chr7D 100.000 3543 0 0 1 3543 620212752 620216294 0.000000e+00 6543.0
1 TraesCS7D01G524100 chr7D 82.157 1474 182 46 1107 2544 620583381 620584809 0.000000e+00 1190.0
2 TraesCS7D01G524100 chr7D 84.837 1075 129 20 1494 2544 619582688 619583752 0.000000e+00 1051.0
3 TraesCS7D01G524100 chr7D 85.989 571 56 11 1538 2092 414293654 414293092 1.100000e-164 590.0
4 TraesCS7D01G524100 chr7D 82.327 679 65 22 847 1491 414294320 414293663 4.020000e-149 538.0
5 TraesCS7D01G524100 chr7D 86.017 472 45 8 2221 2689 414293052 414292599 1.480000e-133 486.0
6 TraesCS7D01G524100 chr7D 80.675 326 50 7 1107 1421 619582324 619582647 1.270000e-59 241.0
7 TraesCS7D01G524100 chr7D 91.045 134 8 1 336 465 620242586 620242719 1.010000e-40 178.0
8 TraesCS7D01G524100 chr7B 96.867 1245 38 1 1489 2733 716275396 716274153 0.000000e+00 2082.0
9 TraesCS7D01G524100 chr7B 85.066 1058 130 14 1508 2546 715082786 715081738 0.000000e+00 1053.0
10 TraesCS7D01G524100 chr7B 84.877 1058 132 14 1508 2546 714900487 714899439 0.000000e+00 1042.0
11 TraesCS7D01G524100 chr7B 84.840 1062 126 19 1508 2546 715154863 715153814 0.000000e+00 1037.0
12 TraesCS7D01G524100 chr7B 84.557 1062 129 19 1508 2546 715122183 715121134 0.000000e+00 1020.0
13 TraesCS7D01G524100 chr7B 89.803 608 29 13 2924 3510 716274121 716273526 0.000000e+00 749.0
14 TraesCS7D01G524100 chr7B 85.851 629 47 16 847 1475 716276043 716275457 6.450000e-177 630.0
15 TraesCS7D01G524100 chr7B 88.108 370 33 8 2402 2763 428836136 428835770 2.530000e-116 429.0
16 TraesCS7D01G524100 chr7B 79.448 326 54 8 1107 1421 715322137 715321814 5.960000e-53 219.0
17 TraesCS7D01G524100 chr7B 92.308 130 10 0 336 465 716490985 716490856 6.040000e-43 185.0
18 TraesCS7D01G524100 chr7B 95.413 109 5 0 336 444 715929226 715929334 1.310000e-39 174.0
19 TraesCS7D01G524100 chr7A 94.130 971 32 13 2444 3405 714723116 714722162 0.000000e+00 1454.0
20 TraesCS7D01G524100 chr7A 83.771 1485 188 30 1107 2546 714032158 714033634 0.000000e+00 1358.0
21 TraesCS7D01G524100 chr7A 83.771 1485 188 30 1107 2546 714209019 714210495 0.000000e+00 1358.0
22 TraesCS7D01G524100 chr7A 92.190 717 36 8 811 1514 714732031 714731322 0.000000e+00 996.0
23 TraesCS7D01G524100 chr7A 83.641 1082 136 23 1494 2544 713834102 713835173 0.000000e+00 979.0
24 TraesCS7D01G524100 chr7A 97.212 538 14 1 1872 2409 714723651 714723115 0.000000e+00 909.0
25 TraesCS7D01G524100 chr7A 96.210 343 13 0 1510 1852 714724294 714723952 2.390000e-156 562.0
26 TraesCS7D01G524100 chr7A 88.482 382 28 6 433 814 714732332 714731967 6.980000e-122 448.0
27 TraesCS7D01G524100 chr7A 89.375 320 17 7 1199 1514 714725547 714725241 1.540000e-103 387.0
28 TraesCS7D01G524100 chr7A 90.164 61 6 0 3207 3267 126956631 126956571 2.930000e-11 80.5
29 TraesCS7D01G524100 chr4A 85.108 1061 124 17 1508 2546 700429355 700428307 0.000000e+00 1053.0
30 TraesCS7D01G524100 chrUn 85.811 592 72 7 1494 2082 93249141 93248559 5.030000e-173 617.0
31 TraesCS7D01G524100 chrUn 83.716 479 56 12 2087 2544 295702248 295701771 1.950000e-117 433.0
32 TraesCS7D01G524100 chrUn 81.639 305 43 7 1128 1421 93249484 93249182 1.270000e-59 241.0
33 TraesCS7D01G524100 chrUn 95.413 109 5 0 336 444 381761234 381761342 1.310000e-39 174.0
34 TraesCS7D01G524100 chrUn 93.750 112 7 0 336 447 176263995 176263884 6.080000e-38 169.0
35 TraesCS7D01G524100 chrUn 93.750 112 7 0 336 447 176288192 176288081 6.080000e-38 169.0
36 TraesCS7D01G524100 chrUn 93.750 112 7 0 336 447 176320860 176320749 6.080000e-38 169.0
37 TraesCS7D01G524100 chrUn 94.495 109 6 0 336 444 373950262 373950370 6.080000e-38 169.0
38 TraesCS7D01G524100 chrUn 93.750 112 7 0 336 447 441119106 441118995 6.080000e-38 169.0
39 TraesCS7D01G524100 chr1D 93.051 331 17 3 1 326 430972415 430972744 2.470000e-131 479.0
40 TraesCS7D01G524100 chr1D 89.538 325 29 4 7 326 463582388 463582064 1.180000e-109 407.0
41 TraesCS7D01G524100 chr2D 86.486 333 35 5 1 326 288876063 288876392 1.210000e-94 357.0
42 TraesCS7D01G524100 chr2D 93.684 95 6 0 232 326 614302424 614302330 3.690000e-30 143.0
43 TraesCS7D01G524100 chr3D 93.793 145 9 0 182 326 454753966 454754110 5.960000e-53 219.0
44 TraesCS7D01G524100 chr4D 92.500 80 6 0 247 326 177991918 177991997 8.040000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G524100 chr7D 620212752 620216294 3542 False 6543.000000 6543 100.000000 1 3543 1 chr7D.!!$F1 3542
1 TraesCS7D01G524100 chr7D 620583381 620584809 1428 False 1190.000000 1190 82.157000 1107 2544 1 chr7D.!!$F3 1437
2 TraesCS7D01G524100 chr7D 619582324 619583752 1428 False 646.000000 1051 82.756000 1107 2544 2 chr7D.!!$F4 1437
3 TraesCS7D01G524100 chr7D 414292599 414294320 1721 True 538.000000 590 84.777667 847 2689 3 chr7D.!!$R1 1842
4 TraesCS7D01G524100 chr7B 716273526 716276043 2517 True 1153.666667 2082 90.840333 847 3510 3 chr7B.!!$R8 2663
5 TraesCS7D01G524100 chr7B 715081738 715082786 1048 True 1053.000000 1053 85.066000 1508 2546 1 chr7B.!!$R3 1038
6 TraesCS7D01G524100 chr7B 714899439 714900487 1048 True 1042.000000 1042 84.877000 1508 2546 1 chr7B.!!$R2 1038
7 TraesCS7D01G524100 chr7B 715153814 715154863 1049 True 1037.000000 1037 84.840000 1508 2546 1 chr7B.!!$R5 1038
8 TraesCS7D01G524100 chr7B 715121134 715122183 1049 True 1020.000000 1020 84.557000 1508 2546 1 chr7B.!!$R4 1038
9 TraesCS7D01G524100 chr7A 714032158 714033634 1476 False 1358.000000 1358 83.771000 1107 2546 1 chr7A.!!$F2 1439
10 TraesCS7D01G524100 chr7A 714209019 714210495 1476 False 1358.000000 1358 83.771000 1107 2546 1 chr7A.!!$F3 1439
11 TraesCS7D01G524100 chr7A 713834102 713835173 1071 False 979.000000 979 83.641000 1494 2544 1 chr7A.!!$F1 1050
12 TraesCS7D01G524100 chr7A 714722162 714725547 3385 True 828.000000 1454 94.231750 1199 3405 4 chr7A.!!$R2 2206
13 TraesCS7D01G524100 chr7A 714731322 714732332 1010 True 722.000000 996 90.336000 433 1514 2 chr7A.!!$R3 1081
14 TraesCS7D01G524100 chr4A 700428307 700429355 1048 True 1053.000000 1053 85.108000 1508 2546 1 chr4A.!!$R1 1038
15 TraesCS7D01G524100 chrUn 93248559 93249484 925 True 429.000000 617 83.725000 1128 2082 2 chrUn.!!$R6 954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.110056 GTGCGTTGCATCAGAGGTTG 60.110 55.000 0.0 0.0 41.91 3.77 F
199 200 0.169009 GCCACCTCATGCGAGAAAAC 59.831 55.000 0.0 0.0 42.34 2.43 F
214 215 0.600255 AAAACTCCGCTGTGACCTCG 60.600 55.000 0.0 0.0 0.00 4.63 F
513 514 0.796312 GCGGCATATACATCCCAACG 59.204 55.000 0.0 0.0 0.00 4.10 F
1618 2743 1.066858 TCAGACCAATCTTGCGACTCC 60.067 52.381 0.0 0.0 30.42 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 2680 0.107703 CTTCAGCGAGGCCCAACATA 60.108 55.000 0.00 0.00 0.00 2.29 R
1618 2743 1.088340 CAGCGAAGGTCATGCCAGAG 61.088 60.000 8.58 1.30 40.61 3.35 R
1654 2779 1.273455 CCGTCGACGTCACCTTGAAC 61.273 60.000 33.49 0.91 37.74 3.18 R
2350 3801 2.091055 CCCTCCCTCATAGGAACTCTCA 60.091 54.545 0.00 0.00 41.75 3.27 R
3004 4463 0.106769 TGTTGGCCTCTCAAACTGCA 60.107 50.000 3.32 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.924650 GACATATATAAATCGGTAGGAAAGTGT 57.075 33.333 0.00 0.00 0.00 3.55
29 30 9.706691 ACATATATAAATCGGTAGGAAAGTGTG 57.293 33.333 0.00 0.00 0.00 3.82
30 31 9.706691 CATATATAAATCGGTAGGAAAGTGTGT 57.293 33.333 0.00 0.00 0.00 3.72
36 37 8.851541 AAATCGGTAGGAAAGTGTGTATAAAA 57.148 30.769 0.00 0.00 0.00 1.52
37 38 8.488651 AATCGGTAGGAAAGTGTGTATAAAAG 57.511 34.615 0.00 0.00 0.00 2.27
38 39 5.870978 TCGGTAGGAAAGTGTGTATAAAAGC 59.129 40.000 0.00 0.00 0.00 3.51
39 40 5.220340 CGGTAGGAAAGTGTGTATAAAAGCG 60.220 44.000 0.00 0.00 0.00 4.68
40 41 5.870978 GGTAGGAAAGTGTGTATAAAAGCGA 59.129 40.000 0.00 0.00 0.00 4.93
41 42 6.035758 GGTAGGAAAGTGTGTATAAAAGCGAG 59.964 42.308 0.00 0.00 0.00 5.03
42 43 5.790593 AGGAAAGTGTGTATAAAAGCGAGA 58.209 37.500 0.00 0.00 0.00 4.04
43 44 6.407202 AGGAAAGTGTGTATAAAAGCGAGAT 58.593 36.000 0.00 0.00 0.00 2.75
44 45 6.313905 AGGAAAGTGTGTATAAAAGCGAGATG 59.686 38.462 0.00 0.00 0.00 2.90
45 46 6.422776 AAAGTGTGTATAAAAGCGAGATGG 57.577 37.500 0.00 0.00 0.00 3.51
46 47 5.086104 AGTGTGTATAAAAGCGAGATGGT 57.914 39.130 0.00 0.00 0.00 3.55
47 48 6.216801 AGTGTGTATAAAAGCGAGATGGTA 57.783 37.500 0.00 0.00 0.00 3.25
48 49 6.040878 AGTGTGTATAAAAGCGAGATGGTAC 58.959 40.000 0.00 0.00 0.00 3.34
49 50 6.040878 GTGTGTATAAAAGCGAGATGGTACT 58.959 40.000 0.00 0.00 0.00 2.73
50 51 7.067859 AGTGTGTATAAAAGCGAGATGGTACTA 59.932 37.037 0.00 0.00 0.00 1.82
51 52 7.866393 GTGTGTATAAAAGCGAGATGGTACTAT 59.134 37.037 0.00 0.00 0.00 2.12
52 53 8.418662 TGTGTATAAAAGCGAGATGGTACTATT 58.581 33.333 0.00 0.00 0.00 1.73
53 54 9.257651 GTGTATAAAAGCGAGATGGTACTATTT 57.742 33.333 0.00 0.00 0.00 1.40
60 61 8.480643 AAGCGAGATGGTACTATTTAATATGC 57.519 34.615 0.00 0.00 0.00 3.14
61 62 7.611770 AGCGAGATGGTACTATTTAATATGCA 58.388 34.615 0.00 0.00 0.00 3.96
62 63 8.094548 AGCGAGATGGTACTATTTAATATGCAA 58.905 33.333 0.00 0.00 0.00 4.08
63 64 8.169268 GCGAGATGGTACTATTTAATATGCAAC 58.831 37.037 0.00 0.00 0.00 4.17
64 65 9.203421 CGAGATGGTACTATTTAATATGCAACA 57.797 33.333 0.00 0.00 0.00 3.33
91 92 5.242069 TGTTACTTGAACACACAATGGTG 57.758 39.130 0.00 0.00 43.30 4.17
92 93 4.097135 TGTTACTTGAACACACAATGGTGG 59.903 41.667 4.95 0.00 43.30 4.61
93 94 7.397238 TGTTACTTGAACACACAATGGTGGC 62.397 44.000 4.95 0.00 43.30 5.01
103 104 4.082665 CACAATGGTGGCTAGATCATCT 57.917 45.455 0.00 0.00 41.45 2.90
104 105 3.813724 CACAATGGTGGCTAGATCATCTG 59.186 47.826 0.00 0.00 41.45 2.90
105 106 3.181447 ACAATGGTGGCTAGATCATCTGG 60.181 47.826 0.00 0.00 0.00 3.86
106 107 2.180946 TGGTGGCTAGATCATCTGGT 57.819 50.000 0.00 0.00 0.00 4.00
107 108 3.328535 TGGTGGCTAGATCATCTGGTA 57.671 47.619 0.00 0.00 0.00 3.25
108 109 2.965831 TGGTGGCTAGATCATCTGGTAC 59.034 50.000 0.00 0.00 0.00 3.34
109 110 3.235200 GGTGGCTAGATCATCTGGTACT 58.765 50.000 0.00 0.00 0.00 2.73
110 111 4.141018 TGGTGGCTAGATCATCTGGTACTA 60.141 45.833 0.00 0.00 0.00 1.82
111 112 5.020132 GGTGGCTAGATCATCTGGTACTAT 58.980 45.833 0.00 0.00 0.00 2.12
112 113 5.105554 GGTGGCTAGATCATCTGGTACTATG 60.106 48.000 0.00 0.00 0.00 2.23
113 114 5.478679 GTGGCTAGATCATCTGGTACTATGT 59.521 44.000 0.00 0.00 0.00 2.29
114 115 5.478332 TGGCTAGATCATCTGGTACTATGTG 59.522 44.000 0.00 0.00 0.00 3.21
115 116 5.406649 GCTAGATCATCTGGTACTATGTGC 58.593 45.833 0.00 0.00 0.00 4.57
116 117 4.511617 AGATCATCTGGTACTATGTGCG 57.488 45.455 0.00 0.00 0.00 5.34
117 118 3.891977 AGATCATCTGGTACTATGTGCGT 59.108 43.478 0.00 0.00 0.00 5.24
118 119 4.342378 AGATCATCTGGTACTATGTGCGTT 59.658 41.667 0.00 0.00 0.00 4.84
119 120 3.780902 TCATCTGGTACTATGTGCGTTG 58.219 45.455 0.00 0.00 0.00 4.10
120 121 2.004583 TCTGGTACTATGTGCGTTGC 57.995 50.000 0.00 0.00 0.00 4.17
121 122 1.273886 TCTGGTACTATGTGCGTTGCA 59.726 47.619 0.00 0.00 35.60 4.08
122 123 2.093711 TCTGGTACTATGTGCGTTGCAT 60.094 45.455 0.00 0.00 41.91 3.96
123 124 2.276201 TGGTACTATGTGCGTTGCATC 58.724 47.619 0.00 0.00 41.91 3.91
124 125 2.276201 GGTACTATGTGCGTTGCATCA 58.724 47.619 0.00 0.00 41.91 3.07
125 126 2.285220 GGTACTATGTGCGTTGCATCAG 59.715 50.000 0.00 0.00 41.91 2.90
126 127 2.385013 ACTATGTGCGTTGCATCAGA 57.615 45.000 0.00 0.00 41.91 3.27
127 128 2.274437 ACTATGTGCGTTGCATCAGAG 58.726 47.619 11.59 11.59 41.91 3.35
128 129 1.596260 CTATGTGCGTTGCATCAGAGG 59.404 52.381 0.00 0.00 41.91 3.69
129 130 0.321919 ATGTGCGTTGCATCAGAGGT 60.322 50.000 0.00 0.00 41.91 3.85
130 131 0.534877 TGTGCGTTGCATCAGAGGTT 60.535 50.000 0.00 0.00 41.91 3.50
131 132 0.110056 GTGCGTTGCATCAGAGGTTG 60.110 55.000 0.00 0.00 41.91 3.77
132 133 1.236616 TGCGTTGCATCAGAGGTTGG 61.237 55.000 0.00 0.00 31.71 3.77
133 134 0.955428 GCGTTGCATCAGAGGTTGGA 60.955 55.000 0.00 0.00 0.00 3.53
134 135 1.522668 CGTTGCATCAGAGGTTGGAA 58.477 50.000 0.00 0.00 0.00 3.53
135 136 1.466167 CGTTGCATCAGAGGTTGGAAG 59.534 52.381 0.00 0.00 0.00 3.46
136 137 2.508526 GTTGCATCAGAGGTTGGAAGT 58.491 47.619 0.00 0.00 0.00 3.01
137 138 2.887152 GTTGCATCAGAGGTTGGAAGTT 59.113 45.455 0.00 0.00 0.00 2.66
138 139 3.228188 TGCATCAGAGGTTGGAAGTTT 57.772 42.857 0.00 0.00 0.00 2.66
139 140 2.886523 TGCATCAGAGGTTGGAAGTTTG 59.113 45.455 0.00 0.00 0.00 2.93
140 141 3.149196 GCATCAGAGGTTGGAAGTTTGA 58.851 45.455 0.00 0.00 0.00 2.69
141 142 3.760684 GCATCAGAGGTTGGAAGTTTGAT 59.239 43.478 0.00 0.00 0.00 2.57
142 143 4.142513 GCATCAGAGGTTGGAAGTTTGATC 60.143 45.833 0.00 0.00 0.00 2.92
143 144 4.021102 TCAGAGGTTGGAAGTTTGATCC 57.979 45.455 0.00 0.00 37.48 3.36
144 145 3.084786 CAGAGGTTGGAAGTTTGATCCC 58.915 50.000 0.00 0.00 36.04 3.85
145 146 2.989571 AGAGGTTGGAAGTTTGATCCCT 59.010 45.455 0.00 0.00 36.04 4.20
146 147 3.009584 AGAGGTTGGAAGTTTGATCCCTC 59.990 47.826 0.00 0.00 36.04 4.30
147 148 2.989571 AGGTTGGAAGTTTGATCCCTCT 59.010 45.455 0.00 0.00 36.04 3.69
148 149 3.009584 AGGTTGGAAGTTTGATCCCTCTC 59.990 47.826 0.00 0.00 36.04 3.20
149 150 3.348119 GTTGGAAGTTTGATCCCTCTCC 58.652 50.000 0.00 0.00 36.04 3.71
150 151 2.921221 TGGAAGTTTGATCCCTCTCCT 58.079 47.619 0.00 0.00 36.04 3.69
151 152 2.840651 TGGAAGTTTGATCCCTCTCCTC 59.159 50.000 0.00 0.00 36.04 3.71
152 153 2.159028 GGAAGTTTGATCCCTCTCCTCG 60.159 54.545 0.00 0.00 0.00 4.63
153 154 2.534042 AGTTTGATCCCTCTCCTCGA 57.466 50.000 0.00 0.00 0.00 4.04
154 155 2.104170 AGTTTGATCCCTCTCCTCGAC 58.896 52.381 0.00 0.00 0.00 4.20
155 156 1.103803 TTTGATCCCTCTCCTCGACG 58.896 55.000 0.00 0.00 0.00 5.12
156 157 1.384989 TTGATCCCTCTCCTCGACGC 61.385 60.000 0.00 0.00 0.00 5.19
157 158 2.519780 ATCCCTCTCCTCGACGCC 60.520 66.667 0.00 0.00 0.00 5.68
158 159 2.969300 GATCCCTCTCCTCGACGCCT 62.969 65.000 0.00 0.00 0.00 5.52
159 160 1.706995 ATCCCTCTCCTCGACGCCTA 61.707 60.000 0.00 0.00 0.00 3.93
160 161 1.228306 CCCTCTCCTCGACGCCTAT 60.228 63.158 0.00 0.00 0.00 2.57
161 162 0.824182 CCCTCTCCTCGACGCCTATT 60.824 60.000 0.00 0.00 0.00 1.73
162 163 1.033574 CCTCTCCTCGACGCCTATTT 58.966 55.000 0.00 0.00 0.00 1.40
163 164 1.409427 CCTCTCCTCGACGCCTATTTT 59.591 52.381 0.00 0.00 0.00 1.82
164 165 2.159085 CCTCTCCTCGACGCCTATTTTT 60.159 50.000 0.00 0.00 0.00 1.94
179 180 2.197324 TTTTTGACTGGGCCGGCT 59.803 55.556 28.56 5.85 0.00 5.52
180 181 2.199652 TTTTTGACTGGGCCGGCTG 61.200 57.895 28.56 18.82 0.00 4.85
193 194 4.783621 GGCTGCCACCTCATGCGA 62.784 66.667 15.17 0.00 0.00 5.10
194 195 3.200593 GCTGCCACCTCATGCGAG 61.201 66.667 0.00 0.00 39.16 5.03
195 196 2.580815 CTGCCACCTCATGCGAGA 59.419 61.111 0.00 0.00 42.34 4.04
196 197 1.078918 CTGCCACCTCATGCGAGAA 60.079 57.895 0.00 0.00 42.34 2.87
197 198 0.674581 CTGCCACCTCATGCGAGAAA 60.675 55.000 0.00 0.00 42.34 2.52
198 199 0.250684 TGCCACCTCATGCGAGAAAA 60.251 50.000 0.00 0.00 42.34 2.29
199 200 0.169009 GCCACCTCATGCGAGAAAAC 59.831 55.000 0.00 0.00 42.34 2.43
200 201 1.813513 CCACCTCATGCGAGAAAACT 58.186 50.000 0.00 0.00 42.34 2.66
201 202 1.734465 CCACCTCATGCGAGAAAACTC 59.266 52.381 0.00 0.00 42.34 3.01
202 203 1.734465 CACCTCATGCGAGAAAACTCC 59.266 52.381 0.00 0.00 42.34 3.85
203 204 1.002366 CCTCATGCGAGAAAACTCCG 58.998 55.000 0.00 0.00 42.34 4.63
207 208 3.952811 GCGAGAAAACTCCGCTGT 58.047 55.556 0.00 0.00 44.83 4.40
208 209 1.493311 GCGAGAAAACTCCGCTGTG 59.507 57.895 0.00 0.00 44.83 3.66
209 210 0.944311 GCGAGAAAACTCCGCTGTGA 60.944 55.000 0.00 0.00 44.83 3.58
210 211 0.784778 CGAGAAAACTCCGCTGTGAC 59.215 55.000 0.00 0.00 0.00 3.67
211 212 1.149148 GAGAAAACTCCGCTGTGACC 58.851 55.000 0.00 0.00 0.00 4.02
212 213 0.759346 AGAAAACTCCGCTGTGACCT 59.241 50.000 0.00 0.00 0.00 3.85
213 214 1.149148 GAAAACTCCGCTGTGACCTC 58.851 55.000 0.00 0.00 0.00 3.85
214 215 0.600255 AAAACTCCGCTGTGACCTCG 60.600 55.000 0.00 0.00 0.00 4.63
215 216 3.575351 AACTCCGCTGTGACCTCGC 62.575 63.158 0.00 0.00 0.00 5.03
216 217 4.056125 CTCCGCTGTGACCTCGCA 62.056 66.667 0.00 0.00 34.84 5.10
231 232 2.307768 CTCGCAGGAGGATTAGTACCA 58.692 52.381 0.00 0.00 36.61 3.25
232 233 2.029623 TCGCAGGAGGATTAGTACCAC 58.970 52.381 0.00 0.00 0.00 4.16
233 234 1.068741 CGCAGGAGGATTAGTACCACC 59.931 57.143 0.00 0.00 38.20 4.61
234 235 2.399580 GCAGGAGGATTAGTACCACCT 58.600 52.381 0.00 0.00 46.42 4.00
235 236 2.365941 GCAGGAGGATTAGTACCACCTC 59.634 54.545 13.36 13.36 44.36 3.85
236 237 2.623889 CAGGAGGATTAGTACCACCTCG 59.376 54.545 14.54 0.00 44.36 4.63
237 238 1.340568 GGAGGATTAGTACCACCTCGC 59.659 57.143 14.54 7.81 46.70 5.03
238 239 1.001597 GAGGATTAGTACCACCTCGCG 60.002 57.143 0.00 0.00 39.27 5.87
239 240 1.027357 GGATTAGTACCACCTCGCGA 58.973 55.000 9.26 9.26 0.00 5.87
240 241 1.001597 GGATTAGTACCACCTCGCGAG 60.002 57.143 29.06 29.06 0.00 5.03
241 242 1.945394 GATTAGTACCACCTCGCGAGA 59.055 52.381 36.59 14.36 39.12 4.04
277 278 8.744568 TTTTTGCCTTTTAAATCTCAACCATT 57.255 26.923 0.00 0.00 0.00 3.16
278 279 7.727331 TTTGCCTTTTAAATCTCAACCATTG 57.273 32.000 0.00 0.00 0.00 2.82
279 280 6.662865 TGCCTTTTAAATCTCAACCATTGA 57.337 33.333 0.00 0.00 38.17 2.57
280 281 7.243604 TGCCTTTTAAATCTCAACCATTGAT 57.756 32.000 0.00 0.00 39.30 2.57
281 282 7.678837 TGCCTTTTAAATCTCAACCATTGATT 58.321 30.769 0.00 0.00 39.30 2.57
282 283 8.156165 TGCCTTTTAAATCTCAACCATTGATTT 58.844 29.630 0.00 0.00 41.46 2.17
283 284 9.002600 GCCTTTTAAATCTCAACCATTGATTTT 57.997 29.630 0.00 0.00 39.90 1.82
318 319 9.715121 ACATATAATTGACGGATATAAAACGGT 57.285 29.630 0.00 0.00 0.00 4.83
319 320 9.967245 CATATAATTGACGGATATAAAACGGTG 57.033 33.333 0.00 0.00 0.00 4.94
320 321 9.932207 ATATAATTGACGGATATAAAACGGTGA 57.068 29.630 0.00 0.00 0.00 4.02
321 322 5.978934 ATTGACGGATATAAAACGGTGAC 57.021 39.130 0.00 0.00 0.00 3.67
350 351 7.865530 AAGGTAAAAATTTGTATGAGGGGTT 57.134 32.000 0.00 0.00 0.00 4.11
351 352 7.239763 AGGTAAAAATTTGTATGAGGGGTTG 57.760 36.000 0.00 0.00 0.00 3.77
352 353 6.212589 AGGTAAAAATTTGTATGAGGGGTTGG 59.787 38.462 0.00 0.00 0.00 3.77
353 354 6.014070 GGTAAAAATTTGTATGAGGGGTTGGT 60.014 38.462 0.00 0.00 0.00 3.67
354 355 7.178805 GGTAAAAATTTGTATGAGGGGTTGGTA 59.821 37.037 0.00 0.00 0.00 3.25
355 356 7.619512 AAAAATTTGTATGAGGGGTTGGTAA 57.380 32.000 0.00 0.00 0.00 2.85
356 357 7.619512 AAAATTTGTATGAGGGGTTGGTAAA 57.380 32.000 0.00 0.00 0.00 2.01
357 358 7.806680 AAATTTGTATGAGGGGTTGGTAAAT 57.193 32.000 0.00 0.00 0.00 1.40
358 359 7.806680 AATTTGTATGAGGGGTTGGTAAATT 57.193 32.000 0.00 0.00 0.00 1.82
359 360 6.597832 TTTGTATGAGGGGTTGGTAAATTG 57.402 37.500 0.00 0.00 0.00 2.32
360 361 5.263872 TGTATGAGGGGTTGGTAAATTGT 57.736 39.130 0.00 0.00 0.00 2.71
361 362 5.646215 TGTATGAGGGGTTGGTAAATTGTT 58.354 37.500 0.00 0.00 0.00 2.83
362 363 6.791371 TGTATGAGGGGTTGGTAAATTGTTA 58.209 36.000 0.00 0.00 0.00 2.41
363 364 7.239438 TGTATGAGGGGTTGGTAAATTGTTAA 58.761 34.615 0.00 0.00 0.00 2.01
364 365 7.896496 TGTATGAGGGGTTGGTAAATTGTTAAT 59.104 33.333 0.00 0.00 0.00 1.40
365 366 7.806680 ATGAGGGGTTGGTAAATTGTTAATT 57.193 32.000 0.00 0.00 0.00 1.40
366 367 7.619512 TGAGGGGTTGGTAAATTGTTAATTT 57.380 32.000 5.07 5.07 43.19 1.82
367 368 7.445945 TGAGGGGTTGGTAAATTGTTAATTTG 58.554 34.615 9.19 0.00 41.01 2.32
368 369 6.774673 AGGGGTTGGTAAATTGTTAATTTGG 58.225 36.000 9.19 0.00 41.01 3.28
369 370 5.413213 GGGGTTGGTAAATTGTTAATTTGGC 59.587 40.000 9.19 3.48 41.01 4.52
370 371 6.234920 GGGTTGGTAAATTGTTAATTTGGCT 58.765 36.000 9.19 0.00 41.01 4.75
371 372 6.712998 GGGTTGGTAAATTGTTAATTTGGCTT 59.287 34.615 9.19 0.00 41.01 4.35
372 373 7.094975 GGGTTGGTAAATTGTTAATTTGGCTTC 60.095 37.037 9.19 0.00 41.01 3.86
373 374 7.442666 GGTTGGTAAATTGTTAATTTGGCTTCA 59.557 33.333 9.19 0.29 41.01 3.02
374 375 8.495148 GTTGGTAAATTGTTAATTTGGCTTCAG 58.505 33.333 9.19 0.00 41.01 3.02
375 376 6.648725 TGGTAAATTGTTAATTTGGCTTCAGC 59.351 34.615 9.19 0.00 41.01 4.26
376 377 6.648725 GGTAAATTGTTAATTTGGCTTCAGCA 59.351 34.615 9.19 0.00 41.01 4.41
377 378 7.334171 GGTAAATTGTTAATTTGGCTTCAGCAT 59.666 33.333 9.19 0.00 41.01 3.79
378 379 9.364989 GTAAATTGTTAATTTGGCTTCAGCATA 57.635 29.630 9.19 0.00 41.01 3.14
380 381 9.452287 AAATTGTTAATTTGGCTTCAGCATATT 57.548 25.926 0.30 0.18 39.50 1.28
383 384 9.531942 TTGTTAATTTGGCTTCAGCATATTATG 57.468 29.630 0.30 0.00 44.36 1.90
384 385 8.911965 TGTTAATTTGGCTTCAGCATATTATGA 58.088 29.630 7.87 0.00 44.36 2.15
385 386 9.403110 GTTAATTTGGCTTCAGCATATTATGAG 57.597 33.333 7.87 0.00 44.36 2.90
386 387 5.443185 TTTGGCTTCAGCATATTATGAGC 57.557 39.130 7.87 7.11 44.36 4.26
387 388 4.362470 TGGCTTCAGCATATTATGAGCT 57.638 40.909 7.87 0.00 44.36 4.09
427 428 8.530269 AGTTTTGGTTATACGACTAACAGAAG 57.470 34.615 11.85 0.00 34.03 2.85
428 429 8.146412 AGTTTTGGTTATACGACTAACAGAAGT 58.854 33.333 11.85 0.00 34.03 3.01
429 430 8.768019 GTTTTGGTTATACGACTAACAGAAGTT 58.232 33.333 11.85 0.00 41.74 2.66
430 431 7.878477 TTGGTTATACGACTAACAGAAGTTG 57.122 36.000 11.85 0.00 38.69 3.16
431 432 6.392354 TGGTTATACGACTAACAGAAGTTGG 58.608 40.000 11.85 0.00 41.49 3.77
439 440 5.289675 CGACTAACAGAAGTTGGAATAGCAG 59.710 44.000 0.00 0.00 38.37 4.24
470 471 7.132694 TGCATATAATAAATCTGAACGCCAG 57.867 36.000 0.00 0.00 44.27 4.85
513 514 0.796312 GCGGCATATACATCCCAACG 59.204 55.000 0.00 0.00 0.00 4.10
518 519 2.547218 GCATATACATCCCAACGTCCGT 60.547 50.000 0.00 0.00 0.00 4.69
529 530 3.444642 CGTCCGTACGTGTGCTTC 58.555 61.111 15.21 0.00 44.21 3.86
611 612 3.131223 TCCAGGTTAAAGCGAGAGATCAG 59.869 47.826 0.00 0.00 0.00 2.90
616 617 4.504826 GGTTAAAGCGAGAGATCAGTTAGC 59.495 45.833 0.00 0.00 0.00 3.09
661 662 2.649331 AGAGTACATTCGAACGGTGG 57.351 50.000 13.05 0.00 0.00 4.61
664 665 1.829222 AGTACATTCGAACGGTGGGAT 59.171 47.619 13.05 0.00 0.00 3.85
667 668 1.829222 ACATTCGAACGGTGGGATAGT 59.171 47.619 0.00 0.00 0.00 2.12
698 699 5.534207 TGGAACACGACCTTTTTAGTAGA 57.466 39.130 0.00 0.00 0.00 2.59
699 700 6.105397 TGGAACACGACCTTTTTAGTAGAT 57.895 37.500 0.00 0.00 0.00 1.98
700 701 7.230849 TGGAACACGACCTTTTTAGTAGATA 57.769 36.000 0.00 0.00 0.00 1.98
702 703 7.177216 TGGAACACGACCTTTTTAGTAGATAGA 59.823 37.037 0.00 0.00 0.00 1.98
703 704 7.701501 GGAACACGACCTTTTTAGTAGATAGAG 59.298 40.741 0.00 0.00 0.00 2.43
704 705 7.700022 ACACGACCTTTTTAGTAGATAGAGT 57.300 36.000 0.00 0.00 0.00 3.24
705 706 8.798859 ACACGACCTTTTTAGTAGATAGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
706 707 8.672815 ACACGACCTTTTTAGTAGATAGAGTAC 58.327 37.037 0.00 0.00 0.00 2.73
707 708 8.671921 CACGACCTTTTTAGTAGATAGAGTACA 58.328 37.037 0.00 0.00 0.00 2.90
708 709 9.236006 ACGACCTTTTTAGTAGATAGAGTACAA 57.764 33.333 0.00 0.00 0.00 2.41
709 710 9.719279 CGACCTTTTTAGTAGATAGAGTACAAG 57.281 37.037 0.00 0.00 0.00 3.16
711 712 9.544579 ACCTTTTTAGTAGATAGAGTACAAGGT 57.455 33.333 0.00 0.00 0.00 3.50
764 765 5.402398 GTTATGAAGTCCACATTTTGAGGC 58.598 41.667 0.00 0.00 0.00 4.70
770 771 1.176527 CCACATTTTGAGGCATCCGT 58.823 50.000 0.00 0.00 0.00 4.69
805 806 2.351726 GCGGTTATGAAGTCCACATGAC 59.648 50.000 0.00 0.00 44.82 3.06
814 815 2.736144 GTCCACATGACTTACGTCCA 57.264 50.000 0.00 0.00 41.03 4.02
815 816 2.334838 GTCCACATGACTTACGTCCAC 58.665 52.381 0.00 0.00 41.03 4.02
816 817 1.964933 TCCACATGACTTACGTCCACA 59.035 47.619 0.00 0.00 39.47 4.17
817 818 2.565391 TCCACATGACTTACGTCCACAT 59.435 45.455 0.00 0.00 39.47 3.21
818 819 3.007506 TCCACATGACTTACGTCCACATT 59.992 43.478 0.00 0.00 39.47 2.71
819 820 3.751175 CCACATGACTTACGTCCACATTT 59.249 43.478 0.00 0.00 39.47 2.32
820 821 4.215399 CCACATGACTTACGTCCACATTTT 59.785 41.667 0.00 0.00 39.47 1.82
821 822 5.146460 CACATGACTTACGTCCACATTTTG 58.854 41.667 0.00 0.00 39.47 2.44
822 823 5.049749 CACATGACTTACGTCCACATTTTGA 60.050 40.000 0.00 0.00 39.47 2.69
823 824 5.179368 ACATGACTTACGTCCACATTTTGAG 59.821 40.000 0.00 0.00 39.47 3.02
824 825 4.062293 TGACTTACGTCCACATTTTGAGG 58.938 43.478 0.00 0.00 39.47 3.86
825 826 4.062991 GACTTACGTCCACATTTTGAGGT 58.937 43.478 0.00 0.00 33.98 3.85
826 827 5.217978 ACTTACGTCCACATTTTGAGGTA 57.782 39.130 0.00 0.00 32.42 3.08
827 828 5.801380 ACTTACGTCCACATTTTGAGGTAT 58.199 37.500 0.00 0.00 33.41 2.73
828 829 5.873164 ACTTACGTCCACATTTTGAGGTATC 59.127 40.000 0.00 0.00 33.41 2.24
829 830 3.606687 ACGTCCACATTTTGAGGTATCC 58.393 45.455 0.00 0.00 29.78 2.59
830 831 2.607635 CGTCCACATTTTGAGGTATCCG 59.392 50.000 0.00 0.00 29.78 4.18
831 832 2.354821 GTCCACATTTTGAGGTATCCGC 59.645 50.000 0.00 0.00 29.78 5.54
832 833 2.026729 TCCACATTTTGAGGTATCCGCA 60.027 45.455 0.00 0.00 29.78 5.69
833 834 2.752354 CCACATTTTGAGGTATCCGCAA 59.248 45.455 1.15 1.15 41.25 4.85
840 841 5.713792 TTTGAGGTATCCGCAAATTTGAA 57.286 34.783 22.31 6.59 45.47 2.69
841 842 4.695217 TGAGGTATCCGCAAATTTGAAC 57.305 40.909 22.31 10.14 28.67 3.18
842 843 4.075682 TGAGGTATCCGCAAATTTGAACA 58.924 39.130 22.31 4.21 28.67 3.18
843 844 4.520874 TGAGGTATCCGCAAATTTGAACAA 59.479 37.500 22.31 4.10 28.67 2.83
844 845 5.010112 TGAGGTATCCGCAAATTTGAACAAA 59.990 36.000 22.31 2.48 28.67 2.83
845 846 5.469479 AGGTATCCGCAAATTTGAACAAAG 58.531 37.500 22.31 5.07 33.32 2.77
862 863 1.722011 AAGCGGTTATGAAGTCCACG 58.278 50.000 0.00 0.00 0.00 4.94
865 866 1.938016 GCGGTTATGAAGTCCACGTGT 60.938 52.381 15.65 0.00 0.00 4.49
866 867 1.724623 CGGTTATGAAGTCCACGTGTG 59.275 52.381 15.65 6.24 0.00 3.82
867 868 2.608506 CGGTTATGAAGTCCACGTGTGA 60.609 50.000 15.65 8.70 0.00 3.58
878 879 3.370131 CGTGTGATGTACGTCCGC 58.630 61.111 12.54 9.25 36.83 5.54
944 952 4.507916 TCCTCGCCTCCTCCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
1059 1077 3.266772 TCTTCCTTGCATTGGATGGTACT 59.733 43.478 16.63 0.00 33.09 2.73
1066 1084 3.514706 TGCATTGGATGGTACTTGCATTT 59.485 39.130 0.00 0.00 35.36 2.32
1148 1178 2.126734 GTTCTGCGTGCATGCACC 60.127 61.111 37.92 30.41 43.49 5.01
1401 1454 1.837439 TCCAACTACCGGATGCAATCT 59.163 47.619 9.46 0.00 44.71 2.40
1518 2643 9.616634 CATTATACATCTATGTGCATCCAAAAC 57.383 33.333 5.85 0.00 41.89 2.43
1555 2680 1.458639 GCCTTGTCCTTGCAGCAAGT 61.459 55.000 29.36 0.00 39.58 3.16
1594 2719 2.711922 CCCTCCAGCGTACGAGCTT 61.712 63.158 21.65 0.00 46.80 3.74
1618 2743 1.066858 TCAGACCAATCTTGCGACTCC 60.067 52.381 0.00 0.00 30.42 3.85
2226 3666 2.355115 GCCCCTGGTAAGTGTGGG 59.645 66.667 0.00 0.00 39.37 4.61
2350 3801 1.525995 CAAGCTGACCCCGTGTTGT 60.526 57.895 0.00 0.00 0.00 3.32
2428 3879 3.813724 TCTACGACCTATGTGAGAATCCG 59.186 47.826 0.00 0.00 0.00 4.18
2573 4024 7.315142 TGTATTTTTGGCAGAAGCTTGATTAG 58.685 34.615 2.10 0.00 41.70 1.73
2589 4040 7.448469 AGCTTGATTAGTTGATAGTTTTGGTGT 59.552 33.333 0.00 0.00 0.00 4.16
2866 4320 2.037902 TCACTGTTCGGCTGGTTGATTA 59.962 45.455 0.00 0.00 0.00 1.75
2900 4354 2.415090 GCCATGCACTTTGTAGCAAGAG 60.415 50.000 0.00 0.00 44.88 2.85
2902 4356 1.896220 TGCACTTTGTAGCAAGAGGG 58.104 50.000 0.00 0.00 37.90 4.30
2903 4357 1.419762 TGCACTTTGTAGCAAGAGGGA 59.580 47.619 0.00 0.00 37.90 4.20
2904 4358 2.040278 TGCACTTTGTAGCAAGAGGGAT 59.960 45.455 0.00 0.00 37.90 3.85
2905 4359 3.263170 TGCACTTTGTAGCAAGAGGGATA 59.737 43.478 0.00 0.00 37.90 2.59
2906 4360 4.261801 GCACTTTGTAGCAAGAGGGATAA 58.738 43.478 0.00 0.00 0.00 1.75
2908 4362 5.183140 GCACTTTGTAGCAAGAGGGATAAAA 59.817 40.000 0.00 0.00 0.00 1.52
2909 4363 6.127619 GCACTTTGTAGCAAGAGGGATAAAAT 60.128 38.462 0.00 0.00 0.00 1.82
2910 4364 7.067008 GCACTTTGTAGCAAGAGGGATAAAATA 59.933 37.037 0.00 0.00 0.00 1.40
2911 4365 8.956426 CACTTTGTAGCAAGAGGGATAAAATAA 58.044 33.333 0.00 0.00 0.00 1.40
2912 4366 9.528489 ACTTTGTAGCAAGAGGGATAAAATAAA 57.472 29.630 0.00 0.00 0.00 1.40
2967 4425 2.203470 TCAGGAAATGTGCATGCTCA 57.797 45.000 23.37 23.37 0.00 4.26
3086 4555 3.997021 AGACAACCTGCTTAATTCGACTG 59.003 43.478 0.00 0.00 0.00 3.51
3087 4556 2.484264 ACAACCTGCTTAATTCGACTGC 59.516 45.455 0.00 0.00 0.00 4.40
3088 4557 2.472695 ACCTGCTTAATTCGACTGCA 57.527 45.000 0.00 0.00 0.00 4.41
3090 4559 2.289694 ACCTGCTTAATTCGACTGCAGT 60.290 45.455 21.88 21.88 46.60 4.40
3091 4560 2.349886 CCTGCTTAATTCGACTGCAGTC 59.650 50.000 32.73 32.73 46.60 3.51
3092 4561 2.995939 CTGCTTAATTCGACTGCAGTCA 59.004 45.455 38.31 25.00 44.99 3.41
3093 4562 3.599343 TGCTTAATTCGACTGCAGTCAT 58.401 40.909 38.31 25.97 44.99 3.06
3094 4563 4.754322 TGCTTAATTCGACTGCAGTCATA 58.246 39.130 38.31 27.82 44.99 2.15
3095 4564 5.359756 TGCTTAATTCGACTGCAGTCATAT 58.640 37.500 38.31 28.59 44.99 1.78
3096 4565 6.512297 TGCTTAATTCGACTGCAGTCATATA 58.488 36.000 38.31 24.54 44.99 0.86
3097 4566 6.642540 TGCTTAATTCGACTGCAGTCATATAG 59.357 38.462 38.31 27.33 44.99 1.31
3187 4656 1.539827 GTTGCTGGTGGTTTTATCGCT 59.460 47.619 0.00 0.00 0.00 4.93
3211 4680 7.290110 TGTCGATCCAAGATACACTATTCAT 57.710 36.000 0.00 0.00 0.00 2.57
3274 4744 9.277783 GTCTATAGACACGTTTTAGGGAGTATA 57.722 37.037 24.97 0.00 44.18 1.47
3491 4981 9.120538 AGTAACGTTTCGGTATTCCTAGTATAA 57.879 33.333 5.91 0.00 29.80 0.98
3524 5014 1.534729 GGGGGATCAACAACTCACAC 58.465 55.000 0.00 0.00 0.00 3.82
3525 5015 1.202879 GGGGGATCAACAACTCACACA 60.203 52.381 0.00 0.00 0.00 3.72
3526 5016 2.555227 GGGGGATCAACAACTCACACAT 60.555 50.000 0.00 0.00 0.00 3.21
3527 5017 3.308117 GGGGGATCAACAACTCACACATA 60.308 47.826 0.00 0.00 0.00 2.29
3528 5018 4.331968 GGGGATCAACAACTCACACATAA 58.668 43.478 0.00 0.00 0.00 1.90
3529 5019 4.949856 GGGGATCAACAACTCACACATAAT 59.050 41.667 0.00 0.00 0.00 1.28
3530 5020 5.163622 GGGGATCAACAACTCACACATAATG 60.164 44.000 0.00 0.00 0.00 1.90
3531 5021 5.415701 GGGATCAACAACTCACACATAATGT 59.584 40.000 0.00 0.00 44.81 2.71
3532 5022 6.071952 GGGATCAACAACTCACACATAATGTT 60.072 38.462 0.00 0.00 40.64 2.71
3533 5023 7.023575 GGATCAACAACTCACACATAATGTTC 58.976 38.462 0.00 0.00 40.64 3.18
3534 5024 6.934048 TCAACAACTCACACATAATGTTCA 57.066 33.333 0.00 0.00 40.64 3.18
3535 5025 6.724263 TCAACAACTCACACATAATGTTCAC 58.276 36.000 0.00 0.00 40.64 3.18
3536 5026 5.342806 ACAACTCACACATAATGTTCACG 57.657 39.130 0.00 0.00 40.64 4.35
3537 5027 4.814234 ACAACTCACACATAATGTTCACGT 59.186 37.500 0.00 0.00 40.64 4.49
3538 5028 5.986741 ACAACTCACACATAATGTTCACGTA 59.013 36.000 0.00 0.00 40.64 3.57
3539 5029 6.073980 ACAACTCACACATAATGTTCACGTAC 60.074 38.462 0.00 0.00 40.64 3.67
3540 5030 5.534407 ACTCACACATAATGTTCACGTACA 58.466 37.500 0.00 0.00 40.64 2.90
3541 5031 5.986741 ACTCACACATAATGTTCACGTACAA 59.013 36.000 0.00 0.00 40.64 2.41
3542 5032 6.145534 ACTCACACATAATGTTCACGTACAAG 59.854 38.462 0.00 0.00 40.64 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.924650 ACACTTTCCTACCGATTTATATATGTC 57.075 33.333 0.00 0.00 0.00 3.06
3 4 9.706691 CACACTTTCCTACCGATTTATATATGT 57.293 33.333 0.00 0.00 0.00 2.29
4 5 9.706691 ACACACTTTCCTACCGATTTATATATG 57.293 33.333 0.00 0.00 0.00 1.78
10 11 9.941325 TTTTATACACACTTTCCTACCGATTTA 57.059 29.630 0.00 0.00 0.00 1.40
11 12 8.851541 TTTTATACACACTTTCCTACCGATTT 57.148 30.769 0.00 0.00 0.00 2.17
12 13 7.065443 GCTTTTATACACACTTTCCTACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
13 14 6.537660 GCTTTTATACACACTTTCCTACCGAT 59.462 38.462 0.00 0.00 0.00 4.18
14 15 5.870978 GCTTTTATACACACTTTCCTACCGA 59.129 40.000 0.00 0.00 0.00 4.69
15 16 5.220340 CGCTTTTATACACACTTTCCTACCG 60.220 44.000 0.00 0.00 0.00 4.02
16 17 5.870978 TCGCTTTTATACACACTTTCCTACC 59.129 40.000 0.00 0.00 0.00 3.18
17 18 6.810182 TCTCGCTTTTATACACACTTTCCTAC 59.190 38.462 0.00 0.00 0.00 3.18
18 19 6.927416 TCTCGCTTTTATACACACTTTCCTA 58.073 36.000 0.00 0.00 0.00 2.94
19 20 5.790593 TCTCGCTTTTATACACACTTTCCT 58.209 37.500 0.00 0.00 0.00 3.36
20 21 6.456988 CCATCTCGCTTTTATACACACTTTCC 60.457 42.308 0.00 0.00 0.00 3.13
21 22 6.092259 ACCATCTCGCTTTTATACACACTTTC 59.908 38.462 0.00 0.00 0.00 2.62
22 23 5.938125 ACCATCTCGCTTTTATACACACTTT 59.062 36.000 0.00 0.00 0.00 2.66
23 24 5.488341 ACCATCTCGCTTTTATACACACTT 58.512 37.500 0.00 0.00 0.00 3.16
24 25 5.086104 ACCATCTCGCTTTTATACACACT 57.914 39.130 0.00 0.00 0.00 3.55
25 26 6.040878 AGTACCATCTCGCTTTTATACACAC 58.959 40.000 0.00 0.00 0.00 3.82
26 27 6.216801 AGTACCATCTCGCTTTTATACACA 57.783 37.500 0.00 0.00 0.00 3.72
27 28 8.813643 AATAGTACCATCTCGCTTTTATACAC 57.186 34.615 0.00 0.00 0.00 2.90
34 35 8.936864 GCATATTAAATAGTACCATCTCGCTTT 58.063 33.333 0.00 0.00 0.00 3.51
35 36 8.094548 TGCATATTAAATAGTACCATCTCGCTT 58.905 33.333 0.00 0.00 0.00 4.68
36 37 7.611770 TGCATATTAAATAGTACCATCTCGCT 58.388 34.615 0.00 0.00 0.00 4.93
37 38 7.827819 TGCATATTAAATAGTACCATCTCGC 57.172 36.000 0.00 0.00 0.00 5.03
38 39 9.203421 TGTTGCATATTAAATAGTACCATCTCG 57.797 33.333 0.00 0.00 0.00 4.04
69 70 4.097135 CCACCATTGTGTGTTCAAGTAACA 59.903 41.667 0.00 0.00 41.47 2.41
70 71 4.606961 CCACCATTGTGTGTTCAAGTAAC 58.393 43.478 0.00 0.00 41.09 2.50
71 72 3.067461 GCCACCATTGTGTGTTCAAGTAA 59.933 43.478 0.00 0.00 41.09 2.24
72 73 2.621055 GCCACCATTGTGTGTTCAAGTA 59.379 45.455 0.00 0.00 41.09 2.24
73 74 1.408702 GCCACCATTGTGTGTTCAAGT 59.591 47.619 0.00 0.00 41.09 3.16
74 75 1.682854 AGCCACCATTGTGTGTTCAAG 59.317 47.619 0.00 0.00 41.09 3.02
75 76 1.774110 AGCCACCATTGTGTGTTCAA 58.226 45.000 0.00 0.00 41.09 2.69
76 77 2.105649 TCTAGCCACCATTGTGTGTTCA 59.894 45.455 0.00 0.00 41.09 3.18
77 78 2.778299 TCTAGCCACCATTGTGTGTTC 58.222 47.619 0.00 0.00 41.09 3.18
78 79 2.949177 TCTAGCCACCATTGTGTGTT 57.051 45.000 0.00 0.00 41.09 3.32
79 80 2.305635 TGATCTAGCCACCATTGTGTGT 59.694 45.455 0.00 0.00 41.09 3.72
80 81 2.989909 TGATCTAGCCACCATTGTGTG 58.010 47.619 0.00 0.00 41.09 3.82
81 82 3.457380 AGATGATCTAGCCACCATTGTGT 59.543 43.478 0.00 0.00 41.09 3.72
82 83 3.813724 CAGATGATCTAGCCACCATTGTG 59.186 47.826 0.00 0.00 42.39 3.33
83 84 3.181447 CCAGATGATCTAGCCACCATTGT 60.181 47.826 0.00 0.00 0.00 2.71
84 85 3.181447 ACCAGATGATCTAGCCACCATTG 60.181 47.826 0.00 0.00 0.00 2.82
85 86 3.051581 ACCAGATGATCTAGCCACCATT 58.948 45.455 0.00 0.00 0.00 3.16
86 87 2.699160 ACCAGATGATCTAGCCACCAT 58.301 47.619 0.00 0.00 0.00 3.55
87 88 2.180946 ACCAGATGATCTAGCCACCA 57.819 50.000 0.00 0.00 0.00 4.17
88 89 3.235200 AGTACCAGATGATCTAGCCACC 58.765 50.000 0.00 0.00 0.00 4.61
89 90 5.478679 ACATAGTACCAGATGATCTAGCCAC 59.521 44.000 0.00 0.00 0.00 5.01
90 91 5.478332 CACATAGTACCAGATGATCTAGCCA 59.522 44.000 0.00 0.00 0.00 4.75
91 92 5.623368 GCACATAGTACCAGATGATCTAGCC 60.623 48.000 0.00 0.00 0.00 3.93
92 93 5.406649 GCACATAGTACCAGATGATCTAGC 58.593 45.833 0.00 0.00 0.00 3.42
93 94 5.182190 ACGCACATAGTACCAGATGATCTAG 59.818 44.000 0.00 0.00 0.00 2.43
94 95 5.070685 ACGCACATAGTACCAGATGATCTA 58.929 41.667 0.00 0.00 0.00 1.98
95 96 3.891977 ACGCACATAGTACCAGATGATCT 59.108 43.478 6.94 0.00 0.00 2.75
96 97 4.244425 ACGCACATAGTACCAGATGATC 57.756 45.455 6.94 0.00 0.00 2.92
97 98 4.371786 CAACGCACATAGTACCAGATGAT 58.628 43.478 6.94 0.00 0.00 2.45
98 99 3.780902 CAACGCACATAGTACCAGATGA 58.219 45.455 6.94 0.00 0.00 2.92
99 100 2.285220 GCAACGCACATAGTACCAGATG 59.715 50.000 0.00 0.00 0.00 2.90
100 101 2.093711 TGCAACGCACATAGTACCAGAT 60.094 45.455 0.00 0.00 31.71 2.90
101 102 1.273886 TGCAACGCACATAGTACCAGA 59.726 47.619 0.00 0.00 31.71 3.86
102 103 1.720805 TGCAACGCACATAGTACCAG 58.279 50.000 0.00 0.00 31.71 4.00
103 104 2.276201 GATGCAACGCACATAGTACCA 58.724 47.619 0.00 0.00 43.04 3.25
104 105 2.276201 TGATGCAACGCACATAGTACC 58.724 47.619 0.00 0.00 43.04 3.34
105 106 3.186909 TCTGATGCAACGCACATAGTAC 58.813 45.455 0.00 0.00 43.04 2.73
106 107 3.447742 CTCTGATGCAACGCACATAGTA 58.552 45.455 0.00 0.00 43.04 1.82
107 108 2.274437 CTCTGATGCAACGCACATAGT 58.726 47.619 0.00 0.00 43.04 2.12
108 109 1.596260 CCTCTGATGCAACGCACATAG 59.404 52.381 0.00 0.00 43.04 2.23
109 110 1.066215 ACCTCTGATGCAACGCACATA 60.066 47.619 0.00 0.00 43.04 2.29
110 111 0.321919 ACCTCTGATGCAACGCACAT 60.322 50.000 0.00 0.00 43.04 3.21
111 112 0.534877 AACCTCTGATGCAACGCACA 60.535 50.000 0.00 0.00 43.04 4.57
112 113 0.110056 CAACCTCTGATGCAACGCAC 60.110 55.000 0.00 0.00 43.04 5.34
113 114 1.236616 CCAACCTCTGATGCAACGCA 61.237 55.000 0.00 0.00 44.86 5.24
114 115 0.955428 TCCAACCTCTGATGCAACGC 60.955 55.000 0.00 0.00 0.00 4.84
115 116 1.466167 CTTCCAACCTCTGATGCAACG 59.534 52.381 0.00 0.00 0.00 4.10
116 117 2.508526 ACTTCCAACCTCTGATGCAAC 58.491 47.619 0.00 0.00 0.00 4.17
117 118 2.957402 ACTTCCAACCTCTGATGCAA 57.043 45.000 0.00 0.00 0.00 4.08
118 119 2.886523 CAAACTTCCAACCTCTGATGCA 59.113 45.455 0.00 0.00 0.00 3.96
119 120 3.149196 TCAAACTTCCAACCTCTGATGC 58.851 45.455 0.00 0.00 0.00 3.91
120 121 4.397417 GGATCAAACTTCCAACCTCTGATG 59.603 45.833 0.00 0.00 33.21 3.07
121 122 4.568592 GGGATCAAACTTCCAACCTCTGAT 60.569 45.833 0.00 0.00 34.77 2.90
122 123 3.244911 GGGATCAAACTTCCAACCTCTGA 60.245 47.826 0.00 0.00 34.77 3.27
123 124 3.084786 GGGATCAAACTTCCAACCTCTG 58.915 50.000 0.00 0.00 34.77 3.35
124 125 2.989571 AGGGATCAAACTTCCAACCTCT 59.010 45.455 0.00 0.00 34.77 3.69
125 126 3.009584 AGAGGGATCAAACTTCCAACCTC 59.990 47.826 0.00 0.00 42.68 3.85
126 127 2.989571 AGAGGGATCAAACTTCCAACCT 59.010 45.455 0.00 0.00 34.77 3.50
127 128 3.348119 GAGAGGGATCAAACTTCCAACC 58.652 50.000 0.00 0.00 34.77 3.77
128 129 3.009584 AGGAGAGGGATCAAACTTCCAAC 59.990 47.826 0.00 0.00 34.77 3.77
129 130 3.260205 AGGAGAGGGATCAAACTTCCAA 58.740 45.455 0.00 0.00 34.77 3.53
130 131 2.840651 GAGGAGAGGGATCAAACTTCCA 59.159 50.000 0.00 0.00 34.77 3.53
131 132 2.159028 CGAGGAGAGGGATCAAACTTCC 60.159 54.545 0.00 0.00 0.00 3.46
132 133 2.761208 TCGAGGAGAGGGATCAAACTTC 59.239 50.000 0.00 0.00 0.00 3.01
133 134 2.498078 GTCGAGGAGAGGGATCAAACTT 59.502 50.000 0.00 0.00 0.00 2.66
134 135 2.104170 GTCGAGGAGAGGGATCAAACT 58.896 52.381 0.00 0.00 0.00 2.66
135 136 1.202313 CGTCGAGGAGAGGGATCAAAC 60.202 57.143 0.00 0.00 0.00 2.93
136 137 1.103803 CGTCGAGGAGAGGGATCAAA 58.896 55.000 0.00 0.00 0.00 2.69
137 138 1.384989 GCGTCGAGGAGAGGGATCAA 61.385 60.000 9.75 0.00 35.42 2.57
138 139 1.824329 GCGTCGAGGAGAGGGATCA 60.824 63.158 9.75 0.00 35.42 2.92
139 140 2.557372 GGCGTCGAGGAGAGGGATC 61.557 68.421 9.75 0.00 35.42 3.36
140 141 1.706995 TAGGCGTCGAGGAGAGGGAT 61.707 60.000 9.75 0.00 35.42 3.85
141 142 1.706995 ATAGGCGTCGAGGAGAGGGA 61.707 60.000 9.75 0.00 35.42 4.20
142 143 0.824182 AATAGGCGTCGAGGAGAGGG 60.824 60.000 9.75 0.00 35.42 4.30
143 144 1.033574 AAATAGGCGTCGAGGAGAGG 58.966 55.000 9.75 0.00 37.76 3.69
144 145 2.873133 AAAATAGGCGTCGAGGAGAG 57.127 50.000 9.75 0.00 0.00 3.20
162 163 2.197324 AGCCGGCCCAGTCAAAAA 59.803 55.556 26.15 0.00 0.00 1.94
163 164 2.597217 CAGCCGGCCCAGTCAAAA 60.597 61.111 26.15 0.00 0.00 2.44
176 177 4.783621 TCGCATGAGGTGGCAGCC 62.784 66.667 13.95 3.66 0.00 4.85
177 178 3.200593 CTCGCATGAGGTGGCAGC 61.201 66.667 9.02 9.02 38.65 5.25
178 179 0.674581 TTTCTCGCATGAGGTGGCAG 60.675 55.000 0.00 0.00 42.79 4.85
179 180 0.250684 TTTTCTCGCATGAGGTGGCA 60.251 50.000 0.00 0.00 42.79 4.92
180 181 0.169009 GTTTTCTCGCATGAGGTGGC 59.831 55.000 0.00 0.00 42.79 5.01
181 182 1.734465 GAGTTTTCTCGCATGAGGTGG 59.266 52.381 0.00 0.00 42.79 4.61
192 193 1.149148 GGTCACAGCGGAGTTTTCTC 58.851 55.000 0.00 0.00 45.49 2.87
193 194 0.759346 AGGTCACAGCGGAGTTTTCT 59.241 50.000 0.00 0.00 0.00 2.52
194 195 1.149148 GAGGTCACAGCGGAGTTTTC 58.851 55.000 0.00 0.00 0.00 2.29
195 196 0.600255 CGAGGTCACAGCGGAGTTTT 60.600 55.000 0.00 0.00 0.00 2.43
196 197 1.006102 CGAGGTCACAGCGGAGTTT 60.006 57.895 0.00 0.00 0.00 2.66
197 198 2.651361 CGAGGTCACAGCGGAGTT 59.349 61.111 0.00 0.00 0.00 3.01
198 199 4.057428 GCGAGGTCACAGCGGAGT 62.057 66.667 0.00 0.00 0.00 3.85
199 200 3.978723 CTGCGAGGTCACAGCGGAG 62.979 68.421 0.00 0.00 39.46 4.63
200 201 4.056125 CTGCGAGGTCACAGCGGA 62.056 66.667 0.00 0.00 39.46 5.54
202 203 3.978723 CTCCTGCGAGGTCACAGCG 62.979 68.421 0.00 0.00 36.53 5.18
203 204 2.125753 CTCCTGCGAGGTCACAGC 60.126 66.667 0.00 0.00 36.53 4.40
211 212 2.034812 GTGGTACTAATCCTCCTGCGAG 59.965 54.545 0.00 0.00 35.72 5.03
212 213 2.029623 GTGGTACTAATCCTCCTGCGA 58.970 52.381 0.00 0.00 0.00 5.10
213 214 1.068741 GGTGGTACTAATCCTCCTGCG 59.931 57.143 0.00 0.00 36.17 5.18
214 215 2.365941 GAGGTGGTACTAATCCTCCTGC 59.634 54.545 9.79 0.49 45.37 4.85
215 216 2.623889 CGAGGTGGTACTAATCCTCCTG 59.376 54.545 9.79 1.02 45.37 3.86
217 218 1.340568 GCGAGGTGGTACTAATCCTCC 59.659 57.143 9.47 0.00 42.21 4.30
218 219 1.001597 CGCGAGGTGGTACTAATCCTC 60.002 57.143 0.00 5.97 41.91 3.71
219 220 1.030457 CGCGAGGTGGTACTAATCCT 58.970 55.000 0.00 0.00 0.00 3.24
220 221 1.001597 CTCGCGAGGTGGTACTAATCC 60.002 57.143 28.40 0.00 0.00 3.01
221 222 1.945394 TCTCGCGAGGTGGTACTAATC 59.055 52.381 33.98 0.00 0.00 1.75
222 223 1.948145 CTCTCGCGAGGTGGTACTAAT 59.052 52.381 33.98 0.00 33.51 1.73
223 224 1.065926 TCTCTCGCGAGGTGGTACTAA 60.066 52.381 33.98 11.99 37.86 2.24
224 225 0.538584 TCTCTCGCGAGGTGGTACTA 59.461 55.000 33.98 12.73 37.86 1.82
225 226 0.322277 TTCTCTCGCGAGGTGGTACT 60.322 55.000 33.98 0.00 37.86 2.73
226 227 0.524862 TTTCTCTCGCGAGGTGGTAC 59.475 55.000 33.98 0.00 37.86 3.34
227 228 1.068055 GTTTTCTCTCGCGAGGTGGTA 60.068 52.381 33.98 14.99 37.86 3.25
228 229 0.319641 GTTTTCTCTCGCGAGGTGGT 60.320 55.000 33.98 0.00 37.86 4.16
229 230 0.038159 AGTTTTCTCTCGCGAGGTGG 60.038 55.000 33.98 23.25 37.86 4.61
230 231 1.341606 GAGTTTTCTCTCGCGAGGTG 58.658 55.000 33.98 25.68 43.12 4.00
231 232 3.796667 GAGTTTTCTCTCGCGAGGT 57.203 52.632 33.98 11.44 43.12 3.85
252 253 8.619546 CAATGGTTGAGATTTAAAAGGCAAAAA 58.380 29.630 0.00 0.00 0.00 1.94
253 254 7.989741 TCAATGGTTGAGATTTAAAAGGCAAAA 59.010 29.630 0.00 0.00 34.08 2.44
254 255 7.504403 TCAATGGTTGAGATTTAAAAGGCAAA 58.496 30.769 0.00 0.00 34.08 3.68
255 256 7.060383 TCAATGGTTGAGATTTAAAAGGCAA 57.940 32.000 0.00 0.00 34.08 4.52
256 257 6.662865 TCAATGGTTGAGATTTAAAAGGCA 57.337 33.333 0.00 0.00 34.08 4.75
257 258 8.552083 AAATCAATGGTTGAGATTTAAAAGGC 57.448 30.769 0.00 0.00 43.98 4.35
292 293 9.715121 ACCGTTTTATATCCGTCAATTATATGT 57.285 29.630 0.00 0.00 0.00 2.29
293 294 9.967245 CACCGTTTTATATCCGTCAATTATATG 57.033 33.333 0.00 0.00 0.00 1.78
294 295 9.932207 TCACCGTTTTATATCCGTCAATTATAT 57.068 29.630 0.00 0.00 0.00 0.86
295 296 9.195411 GTCACCGTTTTATATCCGTCAATTATA 57.805 33.333 0.00 0.00 0.00 0.98
296 297 7.095940 CGTCACCGTTTTATATCCGTCAATTAT 60.096 37.037 0.00 0.00 0.00 1.28
297 298 6.198778 CGTCACCGTTTTATATCCGTCAATTA 59.801 38.462 0.00 0.00 0.00 1.40
298 299 5.005971 CGTCACCGTTTTATATCCGTCAATT 59.994 40.000 0.00 0.00 0.00 2.32
299 300 4.505191 CGTCACCGTTTTATATCCGTCAAT 59.495 41.667 0.00 0.00 0.00 2.57
300 301 3.858812 CGTCACCGTTTTATATCCGTCAA 59.141 43.478 0.00 0.00 0.00 3.18
301 302 3.437428 CGTCACCGTTTTATATCCGTCA 58.563 45.455 0.00 0.00 0.00 4.35
315 316 7.520686 ACAAATTTTTACCTTATACGTCACCG 58.479 34.615 0.00 0.00 40.83 4.94
324 325 9.555411 AACCCCTCATACAAATTTTTACCTTAT 57.445 29.630 0.00 0.00 0.00 1.73
325 326 8.808092 CAACCCCTCATACAAATTTTTACCTTA 58.192 33.333 0.00 0.00 0.00 2.69
326 327 7.256511 CCAACCCCTCATACAAATTTTTACCTT 60.257 37.037 0.00 0.00 0.00 3.50
327 328 6.212589 CCAACCCCTCATACAAATTTTTACCT 59.787 38.462 0.00 0.00 0.00 3.08
328 329 6.014070 ACCAACCCCTCATACAAATTTTTACC 60.014 38.462 0.00 0.00 0.00 2.85
329 330 6.999950 ACCAACCCCTCATACAAATTTTTAC 58.000 36.000 0.00 0.00 0.00 2.01
330 331 8.722622 TTACCAACCCCTCATACAAATTTTTA 57.277 30.769 0.00 0.00 0.00 1.52
331 332 7.619512 TTACCAACCCCTCATACAAATTTTT 57.380 32.000 0.00 0.00 0.00 1.94
332 333 7.619512 TTTACCAACCCCTCATACAAATTTT 57.380 32.000 0.00 0.00 0.00 1.82
333 334 7.806680 ATTTACCAACCCCTCATACAAATTT 57.193 32.000 0.00 0.00 0.00 1.82
334 335 7.236640 ACAATTTACCAACCCCTCATACAAATT 59.763 33.333 0.00 0.00 0.00 1.82
335 336 6.728632 ACAATTTACCAACCCCTCATACAAAT 59.271 34.615 0.00 0.00 0.00 2.32
336 337 6.078664 ACAATTTACCAACCCCTCATACAAA 58.921 36.000 0.00 0.00 0.00 2.83
337 338 5.646215 ACAATTTACCAACCCCTCATACAA 58.354 37.500 0.00 0.00 0.00 2.41
338 339 5.263872 ACAATTTACCAACCCCTCATACA 57.736 39.130 0.00 0.00 0.00 2.29
339 340 7.706100 TTAACAATTTACCAACCCCTCATAC 57.294 36.000 0.00 0.00 0.00 2.39
340 341 8.903059 AATTAACAATTTACCAACCCCTCATA 57.097 30.769 0.00 0.00 0.00 2.15
341 342 7.806680 AATTAACAATTTACCAACCCCTCAT 57.193 32.000 0.00 0.00 0.00 2.90
342 343 7.445945 CAAATTAACAATTTACCAACCCCTCA 58.554 34.615 0.00 0.00 38.97 3.86
343 344 6.876789 CCAAATTAACAATTTACCAACCCCTC 59.123 38.462 0.00 0.00 38.97 4.30
344 345 6.745759 GCCAAATTAACAATTTACCAACCCCT 60.746 38.462 0.00 0.00 38.97 4.79
345 346 5.413213 GCCAAATTAACAATTTACCAACCCC 59.587 40.000 0.00 0.00 38.97 4.95
346 347 6.234920 AGCCAAATTAACAATTTACCAACCC 58.765 36.000 0.00 0.00 38.97 4.11
347 348 7.442666 TGAAGCCAAATTAACAATTTACCAACC 59.557 33.333 0.00 0.00 38.97 3.77
348 349 8.371770 TGAAGCCAAATTAACAATTTACCAAC 57.628 30.769 0.00 0.00 38.97 3.77
349 350 7.172361 GCTGAAGCCAAATTAACAATTTACCAA 59.828 33.333 0.00 0.00 38.97 3.67
350 351 6.648725 GCTGAAGCCAAATTAACAATTTACCA 59.351 34.615 0.00 0.00 38.97 3.25
351 352 6.648725 TGCTGAAGCCAAATTAACAATTTACC 59.351 34.615 0.00 0.00 38.60 2.85
352 353 7.650834 TGCTGAAGCCAAATTAACAATTTAC 57.349 32.000 0.00 0.00 38.60 2.01
354 355 9.452287 AATATGCTGAAGCCAAATTAACAATTT 57.548 25.926 0.00 0.00 39.13 1.82
357 358 9.531942 CATAATATGCTGAAGCCAAATTAACAA 57.468 29.630 0.00 0.00 41.18 2.83
358 359 8.911965 TCATAATATGCTGAAGCCAAATTAACA 58.088 29.630 0.00 0.00 41.18 2.41
359 360 9.403110 CTCATAATATGCTGAAGCCAAATTAAC 57.597 33.333 0.00 0.00 41.18 2.01
360 361 8.084073 GCTCATAATATGCTGAAGCCAAATTAA 58.916 33.333 0.00 0.00 41.18 1.40
361 362 7.449395 AGCTCATAATATGCTGAAGCCAAATTA 59.551 33.333 7.71 2.40 41.18 1.40
362 363 6.267014 AGCTCATAATATGCTGAAGCCAAATT 59.733 34.615 7.71 0.28 41.18 1.82
363 364 5.773680 AGCTCATAATATGCTGAAGCCAAAT 59.226 36.000 7.71 0.00 41.18 2.32
364 365 5.135383 AGCTCATAATATGCTGAAGCCAAA 58.865 37.500 7.71 0.00 41.18 3.28
365 366 4.722220 AGCTCATAATATGCTGAAGCCAA 58.278 39.130 7.71 0.00 41.18 4.52
366 367 4.362470 AGCTCATAATATGCTGAAGCCA 57.638 40.909 7.71 0.00 41.18 4.75
401 402 9.630098 CTTCTGTTAGTCGTATAACCAAAACTA 57.370 33.333 9.11 0.00 35.23 2.24
402 403 8.146412 ACTTCTGTTAGTCGTATAACCAAAACT 58.854 33.333 9.11 0.00 35.23 2.66
403 404 8.302965 ACTTCTGTTAGTCGTATAACCAAAAC 57.697 34.615 9.11 0.00 35.23 2.43
404 405 8.767085 CAACTTCTGTTAGTCGTATAACCAAAA 58.233 33.333 9.11 2.72 35.23 2.44
405 406 7.385752 CCAACTTCTGTTAGTCGTATAACCAAA 59.614 37.037 9.11 4.44 35.23 3.28
406 407 6.869913 CCAACTTCTGTTAGTCGTATAACCAA 59.130 38.462 9.11 3.52 35.23 3.67
407 408 6.209192 TCCAACTTCTGTTAGTCGTATAACCA 59.791 38.462 9.11 0.28 35.23 3.67
408 409 6.624423 TCCAACTTCTGTTAGTCGTATAACC 58.376 40.000 9.11 0.00 35.23 2.85
409 410 8.699283 ATTCCAACTTCTGTTAGTCGTATAAC 57.301 34.615 5.83 5.83 36.40 1.89
411 412 8.133627 GCTATTCCAACTTCTGTTAGTCGTATA 58.866 37.037 0.00 0.00 34.60 1.47
412 413 6.979238 GCTATTCCAACTTCTGTTAGTCGTAT 59.021 38.462 0.00 0.00 34.60 3.06
413 414 6.071784 TGCTATTCCAACTTCTGTTAGTCGTA 60.072 38.462 0.00 0.00 34.60 3.43
414 415 5.169295 GCTATTCCAACTTCTGTTAGTCGT 58.831 41.667 0.00 0.00 34.60 4.34
415 416 5.168569 TGCTATTCCAACTTCTGTTAGTCG 58.831 41.667 0.00 0.00 34.60 4.18
416 417 5.064071 GCTGCTATTCCAACTTCTGTTAGTC 59.936 44.000 0.00 0.00 34.60 2.59
417 418 4.938226 GCTGCTATTCCAACTTCTGTTAGT 59.062 41.667 0.00 0.00 34.60 2.24
418 419 4.937620 TGCTGCTATTCCAACTTCTGTTAG 59.062 41.667 0.00 0.00 34.60 2.34
419 420 4.905429 TGCTGCTATTCCAACTTCTGTTA 58.095 39.130 0.00 0.00 34.60 2.41
420 421 3.754965 TGCTGCTATTCCAACTTCTGTT 58.245 40.909 0.00 0.00 36.75 3.16
421 422 3.423539 TGCTGCTATTCCAACTTCTGT 57.576 42.857 0.00 0.00 0.00 3.41
422 423 3.488721 GCATGCTGCTATTCCAACTTCTG 60.489 47.826 11.37 0.00 40.96 3.02
423 424 2.686915 GCATGCTGCTATTCCAACTTCT 59.313 45.455 11.37 0.00 40.96 2.85
424 425 2.424601 TGCATGCTGCTATTCCAACTTC 59.575 45.455 20.33 0.00 45.31 3.01
425 426 2.449464 TGCATGCTGCTATTCCAACTT 58.551 42.857 20.33 0.00 45.31 2.66
426 427 2.133281 TGCATGCTGCTATTCCAACT 57.867 45.000 20.33 0.00 45.31 3.16
427 428 2.739292 CATGCATGCTGCTATTCCAAC 58.261 47.619 20.33 0.00 45.31 3.77
445 446 7.607607 TCTGGCGTTCAGATTTATTATATGCAT 59.392 33.333 3.79 3.79 46.71 3.96
470 471 3.208747 TCCTTGACCTTTGACCTGTTC 57.791 47.619 0.00 0.00 0.00 3.18
473 474 2.230660 GGTTCCTTGACCTTTGACCTG 58.769 52.381 0.00 0.00 36.73 4.00
513 514 0.731855 GAGGAAGCACACGTACGGAC 60.732 60.000 21.06 5.61 0.00 4.79
518 519 1.287815 CACGGAGGAAGCACACGTA 59.712 57.895 0.00 0.00 35.85 3.57
521 522 1.668151 GACCACGGAGGAAGCACAC 60.668 63.158 2.94 0.00 41.22 3.82
523 524 2.432628 CGACCACGGAGGAAGCAC 60.433 66.667 2.94 0.00 41.22 4.40
661 662 4.192317 GTGTTCCACATGGAGAACTATCC 58.808 47.826 22.85 10.48 46.36 2.59
664 665 2.894765 TCGTGTTCCACATGGAGAACTA 59.105 45.455 22.85 11.98 46.36 2.24
667 668 1.270625 GGTCGTGTTCCACATGGAGAA 60.271 52.381 0.00 0.00 46.36 2.87
726 727 4.002906 TCATAACCCTTCATGCGGATAC 57.997 45.455 0.00 0.00 0.00 2.24
734 735 4.927267 TGTGGACTTCATAACCCTTCAT 57.073 40.909 0.00 0.00 0.00 2.57
764 765 4.734854 CCGCTTCATTCAAATTTACGGATG 59.265 41.667 0.00 0.00 40.49 3.51
770 771 8.519526 ACTTCATAACCGCTTCATTCAAATTTA 58.480 29.630 0.00 0.00 0.00 1.40
805 806 5.293569 GGATACCTCAAAATGTGGACGTAAG 59.706 44.000 5.53 0.00 37.68 2.34
806 807 5.180271 GGATACCTCAAAATGTGGACGTAA 58.820 41.667 5.53 0.00 34.79 3.18
807 808 4.678574 CGGATACCTCAAAATGTGGACGTA 60.679 45.833 5.53 0.00 34.79 3.57
808 809 3.606687 GGATACCTCAAAATGTGGACGT 58.393 45.455 5.53 0.00 34.79 4.34
809 810 2.607635 CGGATACCTCAAAATGTGGACG 59.392 50.000 5.53 1.82 34.79 4.79
810 811 2.354821 GCGGATACCTCAAAATGTGGAC 59.645 50.000 5.53 0.00 34.79 4.02
811 812 2.026729 TGCGGATACCTCAAAATGTGGA 60.027 45.455 5.53 0.00 34.79 4.02
812 813 2.364632 TGCGGATACCTCAAAATGTGG 58.635 47.619 0.00 0.00 37.08 4.17
813 814 4.433186 TTTGCGGATACCTCAAAATGTG 57.567 40.909 3.89 0.00 34.09 3.21
814 815 5.659440 AATTTGCGGATACCTCAAAATGT 57.341 34.783 9.42 0.00 38.49 2.71
815 816 6.098679 TCAAATTTGCGGATACCTCAAAATG 58.901 36.000 13.54 10.98 38.49 2.32
816 817 6.279513 TCAAATTTGCGGATACCTCAAAAT 57.720 33.333 13.54 0.11 38.49 1.82
817 818 5.713792 TCAAATTTGCGGATACCTCAAAA 57.286 34.783 13.54 0.00 38.49 2.44
818 819 5.010112 TGTTCAAATTTGCGGATACCTCAAA 59.990 36.000 13.54 8.09 39.06 2.69
819 820 4.520874 TGTTCAAATTTGCGGATACCTCAA 59.479 37.500 13.54 0.00 0.00 3.02
820 821 4.075682 TGTTCAAATTTGCGGATACCTCA 58.924 39.130 13.54 0.09 0.00 3.86
821 822 4.695217 TGTTCAAATTTGCGGATACCTC 57.305 40.909 13.54 0.00 0.00 3.85
822 823 5.461032 TTTGTTCAAATTTGCGGATACCT 57.539 34.783 13.54 0.00 0.00 3.08
823 824 4.091365 GCTTTGTTCAAATTTGCGGATACC 59.909 41.667 13.54 0.00 0.00 2.73
824 825 4.201485 CGCTTTGTTCAAATTTGCGGATAC 60.201 41.667 13.54 6.75 38.54 2.24
825 826 3.917380 CGCTTTGTTCAAATTTGCGGATA 59.083 39.130 13.54 0.00 38.54 2.59
826 827 2.730928 CGCTTTGTTCAAATTTGCGGAT 59.269 40.909 13.54 0.00 38.54 4.18
827 828 2.123342 CGCTTTGTTCAAATTTGCGGA 58.877 42.857 13.54 0.00 38.54 5.54
828 829 2.558594 CGCTTTGTTCAAATTTGCGG 57.441 45.000 13.54 1.40 38.54 5.69
829 830 1.857837 ACCGCTTTGTTCAAATTTGCG 59.142 42.857 13.54 17.24 41.30 4.85
830 831 3.942539 AACCGCTTTGTTCAAATTTGC 57.057 38.095 13.54 1.14 0.00 3.68
831 832 6.761731 TCATAACCGCTTTGTTCAAATTTG 57.238 33.333 12.15 12.15 0.00 2.32
832 833 6.983890 ACTTCATAACCGCTTTGTTCAAATTT 59.016 30.769 0.00 0.00 0.00 1.82
833 834 6.512297 ACTTCATAACCGCTTTGTTCAAATT 58.488 32.000 0.00 0.00 0.00 1.82
834 835 6.084326 ACTTCATAACCGCTTTGTTCAAAT 57.916 33.333 0.00 0.00 0.00 2.32
835 836 5.506649 GGACTTCATAACCGCTTTGTTCAAA 60.507 40.000 0.00 0.00 0.00 2.69
836 837 4.023536 GGACTTCATAACCGCTTTGTTCAA 60.024 41.667 0.00 0.00 0.00 2.69
837 838 3.500680 GGACTTCATAACCGCTTTGTTCA 59.499 43.478 0.00 0.00 0.00 3.18
838 839 3.500680 TGGACTTCATAACCGCTTTGTTC 59.499 43.478 0.00 0.00 0.00 3.18
839 840 3.252458 GTGGACTTCATAACCGCTTTGTT 59.748 43.478 0.00 0.00 0.00 2.83
840 841 2.812011 GTGGACTTCATAACCGCTTTGT 59.188 45.455 0.00 0.00 0.00 2.83
841 842 2.159707 CGTGGACTTCATAACCGCTTTG 60.160 50.000 0.00 0.00 32.78 2.77
842 843 2.073816 CGTGGACTTCATAACCGCTTT 58.926 47.619 0.00 0.00 32.78 3.51
843 844 1.001633 ACGTGGACTTCATAACCGCTT 59.998 47.619 0.00 0.00 32.78 4.68
844 845 0.606604 ACGTGGACTTCATAACCGCT 59.393 50.000 0.00 0.00 32.78 5.52
845 846 0.719465 CACGTGGACTTCATAACCGC 59.281 55.000 7.95 0.00 0.00 5.68
862 863 0.665068 TGTGCGGACGTACATCACAC 60.665 55.000 16.24 10.16 35.90 3.82
944 952 1.992519 ATGATGGAGAGGGTGCTGCC 61.993 60.000 0.00 0.00 0.00 4.85
1059 1077 5.534654 AGGCAGTAAGTAGTTGAAAATGCAA 59.465 36.000 6.38 0.00 32.92 4.08
1066 1084 4.351874 AGCAAGGCAGTAAGTAGTTGAA 57.648 40.909 0.00 0.00 0.00 2.69
1148 1178 4.686972 AGGTCGATCATGTCAGTACATTG 58.313 43.478 0.00 0.00 44.07 2.82
1281 1326 3.872560 GTCTTTTCACCGACGATGTTT 57.127 42.857 0.00 0.00 0.00 2.83
1438 1500 9.162764 TCTAAAATTTCAATTCGTTAGCTAGCT 57.837 29.630 23.12 23.12 0.00 3.32
1439 1501 9.211556 GTCTAAAATTTCAATTCGTTAGCTAGC 57.788 33.333 6.62 6.62 0.00 3.42
1457 1532 9.587772 CATAACACACTAGCAGTAGTCTAAAAT 57.412 33.333 0.00 0.00 37.40 1.82
1555 2680 0.107703 CTTCAGCGAGGCCCAACATA 60.108 55.000 0.00 0.00 0.00 2.29
1594 2719 3.885724 TCGCAAGATTGGTCTGATGTA 57.114 42.857 0.00 0.00 45.01 2.29
1618 2743 1.088340 CAGCGAAGGTCATGCCAGAG 61.088 60.000 8.58 1.30 40.61 3.35
1654 2779 1.273455 CCGTCGACGTCACCTTGAAC 61.273 60.000 33.49 0.91 37.74 3.18
2226 3666 7.027778 AGAAACCAGATTTGACTTACAACAC 57.972 36.000 0.00 0.00 38.29 3.32
2350 3801 2.091055 CCCTCCCTCATAGGAACTCTCA 60.091 54.545 0.00 0.00 41.75 3.27
2428 3879 2.234168 GTCCCAGTAGAACCTCTTGTCC 59.766 54.545 0.00 0.00 0.00 4.02
2573 4024 6.963049 AGATACGACACCAAAACTATCAAC 57.037 37.500 0.00 0.00 0.00 3.18
2623 4074 4.101114 TCTGAAGCTCACCCCTAAATACA 58.899 43.478 0.00 0.00 0.00 2.29
2708 4159 4.788100 CGAGACATTAAGCAATTTGGAACG 59.212 41.667 0.00 0.00 0.00 3.95
2848 4302 6.706270 ACTATATTAATCAACCAGCCGAACAG 59.294 38.462 0.00 0.00 0.00 3.16
2967 4425 1.021968 GTGCCGTCAGTTTTCCTGTT 58.978 50.000 0.00 0.00 42.19 3.16
3004 4463 0.106769 TGTTGGCCTCTCAAACTGCA 60.107 50.000 3.32 0.00 0.00 4.41
3088 4557 7.358770 AGCAGTCAAGAATGTCTATATGACT 57.641 36.000 5.60 5.60 46.03 3.41
3089 4558 8.138074 TGTAGCAGTCAAGAATGTCTATATGAC 58.862 37.037 0.00 0.00 45.54 3.06
3090 4559 8.237811 TGTAGCAGTCAAGAATGTCTATATGA 57.762 34.615 0.00 0.00 0.00 2.15
3091 4560 8.140628 ACTGTAGCAGTCAAGAATGTCTATATG 58.859 37.037 0.00 0.95 41.21 1.78
3092 4561 8.243961 ACTGTAGCAGTCAAGAATGTCTATAT 57.756 34.615 0.00 0.00 41.21 0.86
3093 4562 7.646548 ACTGTAGCAGTCAAGAATGTCTATA 57.353 36.000 0.00 0.56 41.21 1.31
3094 4563 6.537453 ACTGTAGCAGTCAAGAATGTCTAT 57.463 37.500 0.00 0.00 41.21 1.98
3095 4564 5.984695 ACTGTAGCAGTCAAGAATGTCTA 57.015 39.130 0.00 0.00 41.21 2.59
3096 4565 4.881019 ACTGTAGCAGTCAAGAATGTCT 57.119 40.909 0.00 0.61 41.21 3.41
3187 4656 6.709018 TGAATAGTGTATCTTGGATCGACA 57.291 37.500 0.00 0.00 0.00 4.35
3274 4744 8.042515 GCCCATGCAAAACATTGGATATATATT 58.957 33.333 3.26 0.00 42.98 1.28
3344 4814 1.815003 CTTCAAATGCCCCTCTGTCAC 59.185 52.381 0.00 0.00 0.00 3.67
3432 4922 7.214381 ACTTTTGTATGTACACTGCTCTGTTA 58.786 34.615 0.00 0.00 35.64 2.41
3433 4923 6.055588 ACTTTTGTATGTACACTGCTCTGTT 58.944 36.000 0.00 0.00 35.64 3.16
3485 4975 4.048178 CCCCCTCCCCCTATAGTTTATACT 59.952 50.000 0.00 0.00 38.44 2.12
3486 4976 4.368969 CCCCCTCCCCCTATAGTTTATAC 58.631 52.174 0.00 0.00 0.00 1.47
3510 5000 7.362662 GTGAACATTATGTGTGAGTTGTTGAT 58.637 34.615 0.00 0.00 41.14 2.57
3511 5001 6.510960 CGTGAACATTATGTGTGAGTTGTTGA 60.511 38.462 0.00 0.00 41.14 3.18
3512 5002 5.620822 CGTGAACATTATGTGTGAGTTGTTG 59.379 40.000 0.00 0.00 41.14 3.33
3513 5003 5.295787 ACGTGAACATTATGTGTGAGTTGTT 59.704 36.000 0.00 0.00 41.14 2.83
3514 5004 4.814234 ACGTGAACATTATGTGTGAGTTGT 59.186 37.500 0.00 0.00 41.14 3.32
3515 5005 5.342806 ACGTGAACATTATGTGTGAGTTG 57.657 39.130 0.00 0.00 41.14 3.16
3516 5006 5.986741 TGTACGTGAACATTATGTGTGAGTT 59.013 36.000 0.00 0.00 41.14 3.01
3517 5007 5.534407 TGTACGTGAACATTATGTGTGAGT 58.466 37.500 0.00 0.74 41.14 3.41
3518 5008 6.460664 TTGTACGTGAACATTATGTGTGAG 57.539 37.500 0.00 0.00 41.14 3.51
3519 5009 6.460664 CTTGTACGTGAACATTATGTGTGA 57.539 37.500 0.00 0.00 41.14 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.