Multiple sequence alignment - TraesCS7D01G523600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G523600 chr7D 100.000 3267 0 0 1 3267 620115105 620118371 0.000000e+00 6034.0
1 TraesCS7D01G523600 chr7D 86.489 977 95 21 973 1938 620142860 620143810 0.000000e+00 1038.0
2 TraesCS7D01G523600 chr7D 87.411 564 53 8 1982 2529 620143891 620144452 1.650000e-177 632.0
3 TraesCS7D01G523600 chr7D 86.240 516 68 3 1128 1642 620085654 620086167 1.020000e-154 556.0
4 TraesCS7D01G523600 chr7D 86.193 507 67 3 1136 1640 620197570 620198075 2.220000e-151 545.0
5 TraesCS7D01G523600 chr7D 87.705 366 29 6 2179 2529 620144895 620145259 2.350000e-111 412.0
6 TraesCS7D01G523600 chr7D 90.228 307 28 2 2961 3265 465565881 465566187 1.830000e-107 399.0
7 TraesCS7D01G523600 chr7D 84.024 338 29 10 1701 2023 620198151 620198478 5.300000e-78 302.0
8 TraesCS7D01G523600 chr7D 91.558 154 11 2 2797 2949 34300983 34300831 9.180000e-51 211.0
9 TraesCS7D01G523600 chr7D 89.375 160 5 8 416 563 620142711 620142870 1.200000e-44 191.0
10 TraesCS7D01G523600 chr7A 92.940 1558 88 5 973 2527 714823369 714821831 0.000000e+00 2248.0
11 TraesCS7D01G523600 chr7A 82.097 1240 174 24 1173 2399 714759669 714758465 0.000000e+00 1016.0
12 TraesCS7D01G523600 chr7A 95.388 412 17 2 565 974 10282807 10282396 0.000000e+00 654.0
13 TraesCS7D01G523600 chr7A 92.203 295 11 6 1 293 714825217 714824933 1.090000e-109 407.0
14 TraesCS7D01G523600 chr7A 90.132 304 27 3 2967 3267 450975587 450975284 3.060000e-105 392.0
15 TraesCS7D01G523600 chr7A 86.738 279 16 8 297 563 714823628 714823359 1.150000e-74 291.0
16 TraesCS7D01G523600 chr7A 89.423 104 8 3 1 104 714844438 714844338 9.510000e-26 128.0
17 TraesCS7D01G523600 chr7B 91.841 858 58 3 1070 1926 716467049 716466203 0.000000e+00 1186.0
18 TraesCS7D01G523600 chr7B 87.153 973 85 11 973 1938 716999344 717000283 0.000000e+00 1068.0
19 TraesCS7D01G523600 chr7B 81.718 1269 170 24 1173 2399 716308200 716306952 0.000000e+00 1002.0
20 TraesCS7D01G523600 chr7B 84.767 860 86 19 1701 2529 716315399 716314554 0.000000e+00 821.0
21 TraesCS7D01G523600 chr7B 88.584 657 65 7 973 1625 716316197 716315547 0.000000e+00 789.0
22 TraesCS7D01G523600 chr7B 90.538 613 35 6 1917 2529 716465966 716465377 0.000000e+00 789.0
23 TraesCS7D01G523600 chr7B 90.328 579 40 5 1 563 716998776 716999354 0.000000e+00 745.0
24 TraesCS7D01G523600 chr7B 87.238 572 61 5 1969 2529 717000349 717000919 2.750000e-180 641.0
25 TraesCS7D01G523600 chr7B 90.000 510 28 7 1 494 716479976 716479474 3.550000e-179 638.0
26 TraesCS7D01G523600 chr7B 82.482 685 96 14 980 1640 716370395 716369711 2.190000e-161 579.0
27 TraesCS7D01G523600 chr7B 86.914 512 40 14 56 561 716316679 716316189 1.710000e-152 549.0
28 TraesCS7D01G523600 chr7B 91.531 307 26 0 2961 3267 716463977 716463671 1.080000e-114 424.0
29 TraesCS7D01G523600 chr7B 95.392 217 10 0 2580 2796 716464823 716464607 2.410000e-91 346.0
30 TraesCS7D01G523600 chr7B 98.387 62 1 0 502 563 716475442 716475381 3.450000e-20 110.0
31 TraesCS7D01G523600 chrUn 88.497 652 53 5 973 1621 466806606 466807238 0.000000e+00 769.0
32 TraesCS7D01G523600 chrUn 93.519 216 7 4 1 216 461239700 461239908 6.800000e-82 315.0
33 TraesCS7D01G523600 chrUn 90.968 155 12 2 373 525 461239965 461240119 1.190000e-49 207.0
34 TraesCS7D01G523600 chr6D 96.403 417 14 1 559 974 87081032 87080616 0.000000e+00 686.0
35 TraesCS7D01G523600 chr6D 94.019 418 17 4 563 973 29839646 29840062 7.700000e-176 627.0
36 TraesCS7D01G523600 chr6D 93.791 306 18 1 2962 3267 146943644 146943340 2.970000e-125 459.0
37 TraesCS7D01G523600 chr5D 96.610 413 12 1 564 974 367438730 367439142 0.000000e+00 684.0
38 TraesCS7D01G523600 chr5D 95.894 414 12 3 564 973 445486473 445486885 0.000000e+00 665.0
39 TraesCS7D01G523600 chr5D 94.903 412 14 3 564 974 397882771 397882366 3.550000e-179 638.0
40 TraesCS7D01G523600 chr5D 90.909 66 6 0 343 408 449627269 449627334 4.490000e-14 89.8
41 TraesCS7D01G523600 chr1D 95.642 413 16 2 564 974 397218027 397217615 0.000000e+00 662.0
42 TraesCS7D01G523600 chr1D 91.139 158 12 2 2793 2949 367162688 367162532 2.550000e-51 213.0
43 TraesCS7D01G523600 chr3D 95.098 408 17 3 565 971 43717620 43718025 9.880000e-180 640.0
44 TraesCS7D01G523600 chr3D 92.208 308 21 3 2962 3267 562219825 562219519 1.800000e-117 433.0
45 TraesCS7D01G523600 chr3D 90.228 307 30 0 2961 3267 586293102 586293408 5.080000e-108 401.0
46 TraesCS7D01G523600 chr3D 89.935 308 28 2 2961 3267 121211764 121211459 8.500000e-106 394.0
47 TraesCS7D01G523600 chr3D 91.613 155 11 2 2797 2950 488863427 488863580 2.550000e-51 213.0
48 TraesCS7D01G523600 chr4D 93.765 417 20 6 565 979 455087741 455087329 3.580000e-174 621.0
49 TraesCS7D01G523600 chr4D 91.250 160 11 3 2791 2949 490975318 490975475 7.100000e-52 215.0
50 TraesCS7D01G523600 chr4D 91.026 156 12 2 2795 2949 3393257 3393411 3.300000e-50 209.0
51 TraesCS7D01G523600 chr4D 91.026 156 11 3 2796 2949 447293658 447293812 1.190000e-49 207.0
52 TraesCS7D01G523600 chr2D 90.584 308 27 2 2961 3267 410238831 410239137 1.090000e-109 407.0
53 TraesCS7D01G523600 chr2B 89.902 307 28 3 2961 3267 61599084 61598781 3.060000e-105 392.0
54 TraesCS7D01G523600 chr2B 90.446 157 13 2 2794 2949 421092299 421092144 4.270000e-49 206.0
55 TraesCS7D01G523600 chr2A 92.763 152 9 2 2800 2949 17313822 17313973 5.490000e-53 219.0
56 TraesCS7D01G523600 chr1B 91.558 154 11 2 2803 2954 657167650 657167803 9.180000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G523600 chr7D 620115105 620118371 3266 False 6034.000000 6034 100.000000 1 3267 1 chr7D.!!$F3 3266
1 TraesCS7D01G523600 chr7D 620142711 620145259 2548 False 568.250000 1038 87.745000 416 2529 4 chr7D.!!$F4 2113
2 TraesCS7D01G523600 chr7D 620085654 620086167 513 False 556.000000 556 86.240000 1128 1642 1 chr7D.!!$F2 514
3 TraesCS7D01G523600 chr7D 620197570 620198478 908 False 423.500000 545 85.108500 1136 2023 2 chr7D.!!$F5 887
4 TraesCS7D01G523600 chr7A 714758465 714759669 1204 True 1016.000000 1016 82.097000 1173 2399 1 chr7A.!!$R3 1226
5 TraesCS7D01G523600 chr7A 714821831 714825217 3386 True 982.000000 2248 90.627000 1 2527 3 chr7A.!!$R5 2526
6 TraesCS7D01G523600 chr7B 716306952 716308200 1248 True 1002.000000 1002 81.718000 1173 2399 1 chr7B.!!$R1 1226
7 TraesCS7D01G523600 chr7B 716998776 717000919 2143 False 818.000000 1068 88.239667 1 2529 3 chr7B.!!$F1 2528
8 TraesCS7D01G523600 chr7B 716314554 716316679 2125 True 719.666667 821 86.755000 56 2529 3 chr7B.!!$R5 2473
9 TraesCS7D01G523600 chr7B 716463671 716467049 3378 True 686.250000 1186 92.325500 1070 3267 4 chr7B.!!$R6 2197
10 TraesCS7D01G523600 chr7B 716479474 716479976 502 True 638.000000 638 90.000000 1 494 1 chr7B.!!$R4 493
11 TraesCS7D01G523600 chr7B 716369711 716370395 684 True 579.000000 579 82.482000 980 1640 1 chr7B.!!$R2 660
12 TraesCS7D01G523600 chrUn 466806606 466807238 632 False 769.000000 769 88.497000 973 1621 1 chrUn.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 2065 0.036388 CTGAGTAGGCCTCGGCAAAA 60.036 55.0 9.68 0.0 43.64 2.44 F
1057 2394 0.108424 CCTTCTCCTCCTGCACTTCG 60.108 60.0 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 3153 0.250381 AGGCTCTAGCTGCATCATGC 60.250 55.0 1.35 1.35 40.03 4.06 R
2631 4909 0.507358 GAAAAGTGAGCACGACGTCC 59.493 55.0 10.58 0.00 36.20 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
278 281 1.546961 AGGTCTCGGTCGACTGAAAT 58.453 50.000 26.33 10.82 34.38 2.17
293 1597 8.718734 GTCGACTGAAATTTAACCAAGTCTAAT 58.281 33.333 8.70 0.00 0.00 1.73
295 1599 9.893305 CGACTGAAATTTAACCAAGTCTAATTT 57.107 29.630 0.00 0.00 32.73 1.82
323 1627 9.768662 AATGACATAACTTGCAAGAAAGAAAAT 57.231 25.926 32.50 14.61 0.00 1.82
324 1628 9.768662 ATGACATAACTTGCAAGAAAGAAAATT 57.231 25.926 32.50 15.55 0.00 1.82
368 1683 4.083271 TCTCACGAATATAGCATCGACTGG 60.083 45.833 11.05 0.00 41.43 4.00
419 1735 9.783081 AAGATTTAGCAATCCTGTTTTTGAAAT 57.217 25.926 0.00 0.00 39.95 2.17
552 1883 2.500509 CTACCTAGCAGCAGTAGCAC 57.499 55.000 0.00 0.00 45.49 4.40
553 1884 1.067821 CTACCTAGCAGCAGTAGCACC 59.932 57.143 0.00 0.00 45.49 5.01
554 1885 0.616111 ACCTAGCAGCAGTAGCACCT 60.616 55.000 0.00 0.00 45.49 4.00
555 1886 0.103937 CCTAGCAGCAGTAGCACCTC 59.896 60.000 0.00 0.00 45.49 3.85
556 1887 0.248825 CTAGCAGCAGTAGCACCTCG 60.249 60.000 0.00 0.00 45.49 4.63
557 1888 0.679960 TAGCAGCAGTAGCACCTCGA 60.680 55.000 0.00 0.00 45.49 4.04
558 1889 1.142748 GCAGCAGTAGCACCTCGAT 59.857 57.895 0.00 0.00 45.49 3.59
559 1890 0.873743 GCAGCAGTAGCACCTCGATC 60.874 60.000 0.00 0.00 45.49 3.69
560 1891 0.457443 CAGCAGTAGCACCTCGATCA 59.543 55.000 0.00 0.00 45.49 2.92
561 1892 1.134995 CAGCAGTAGCACCTCGATCAA 60.135 52.381 0.00 0.00 45.49 2.57
562 1893 1.134965 AGCAGTAGCACCTCGATCAAC 60.135 52.381 0.00 0.00 45.49 3.18
563 1894 1.550065 CAGTAGCACCTCGATCAACG 58.450 55.000 0.00 0.00 44.09 4.10
564 1895 0.456221 AGTAGCACCTCGATCAACGG 59.544 55.000 0.00 0.00 42.82 4.44
565 1896 0.454600 GTAGCACCTCGATCAACGGA 59.545 55.000 0.00 0.00 42.82 4.69
566 1897 1.067212 GTAGCACCTCGATCAACGGAT 59.933 52.381 0.00 0.00 42.82 4.18
567 1898 1.399714 AGCACCTCGATCAACGGATA 58.600 50.000 0.00 0.00 42.82 2.59
568 1899 1.754803 AGCACCTCGATCAACGGATAA 59.245 47.619 0.00 0.00 42.82 1.75
569 1900 2.365617 AGCACCTCGATCAACGGATAAT 59.634 45.455 0.00 0.00 42.82 1.28
570 1901 3.131396 GCACCTCGATCAACGGATAATT 58.869 45.455 0.00 0.00 42.82 1.40
571 1902 3.184581 GCACCTCGATCAACGGATAATTC 59.815 47.826 0.00 0.00 42.82 2.17
572 1903 4.368315 CACCTCGATCAACGGATAATTCA 58.632 43.478 0.00 0.00 42.82 2.57
573 1904 4.991056 CACCTCGATCAACGGATAATTCAT 59.009 41.667 0.00 0.00 42.82 2.57
574 1905 5.119279 CACCTCGATCAACGGATAATTCATC 59.881 44.000 0.00 0.00 42.82 2.92
585 1916 2.638480 TAATTCATCCTGAAGCCCGG 57.362 50.000 0.00 0.00 40.05 5.73
586 1917 0.106519 AATTCATCCTGAAGCCCGGG 60.107 55.000 19.09 19.09 40.05 5.73
587 1918 2.631012 ATTCATCCTGAAGCCCGGGC 62.631 60.000 39.29 39.29 40.05 6.13
598 1929 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
599 1930 3.790437 CCGGGCTCATCTGCACCT 61.790 66.667 0.00 0.00 31.60 4.00
600 1931 2.513204 CGGGCTCATCTGCACCTG 60.513 66.667 0.00 0.00 31.60 4.00
601 1932 2.993008 GGGCTCATCTGCACCTGA 59.007 61.111 0.00 0.00 34.04 3.86
602 1933 1.530771 GGGCTCATCTGCACCTGAT 59.469 57.895 0.00 0.00 34.04 2.90
603 1934 0.534652 GGGCTCATCTGCACCTGATC 60.535 60.000 0.00 0.00 34.04 2.92
604 1935 0.179702 GGCTCATCTGCACCTGATCA 59.820 55.000 0.00 0.00 34.04 2.92
605 1936 1.584175 GCTCATCTGCACCTGATCAG 58.416 55.000 16.24 16.24 0.00 2.90
606 1937 1.584175 CTCATCTGCACCTGATCAGC 58.416 55.000 17.76 7.86 0.00 4.26
607 1938 0.906775 TCATCTGCACCTGATCAGCA 59.093 50.000 17.76 12.28 36.72 4.41
608 1939 1.279846 TCATCTGCACCTGATCAGCAA 59.720 47.619 17.76 5.23 37.89 3.91
609 1940 2.089201 CATCTGCACCTGATCAGCAAA 58.911 47.619 17.76 0.07 37.89 3.68
610 1941 2.275134 TCTGCACCTGATCAGCAAAA 57.725 45.000 17.76 2.06 37.89 2.44
611 1942 2.585330 TCTGCACCTGATCAGCAAAAA 58.415 42.857 17.76 0.58 37.89 1.94
674 2005 6.709018 AAAATCCGGGTGGTAGATAAATTG 57.291 37.500 0.00 0.00 36.30 2.32
675 2006 5.640158 AATCCGGGTGGTAGATAAATTGA 57.360 39.130 0.00 0.00 36.30 2.57
676 2007 5.843019 ATCCGGGTGGTAGATAAATTGAT 57.157 39.130 0.00 0.00 36.30 2.57
677 2008 4.968259 TCCGGGTGGTAGATAAATTGATG 58.032 43.478 0.00 0.00 36.30 3.07
678 2009 3.502211 CCGGGTGGTAGATAAATTGATGC 59.498 47.826 0.00 0.00 0.00 3.91
679 2010 3.186409 CGGGTGGTAGATAAATTGATGCG 59.814 47.826 0.00 0.00 0.00 4.73
680 2011 4.134563 GGGTGGTAGATAAATTGATGCGT 58.865 43.478 0.00 0.00 0.00 5.24
681 2012 4.024048 GGGTGGTAGATAAATTGATGCGTG 60.024 45.833 0.00 0.00 0.00 5.34
682 2013 4.814234 GGTGGTAGATAAATTGATGCGTGA 59.186 41.667 0.00 0.00 0.00 4.35
683 2014 5.050091 GGTGGTAGATAAATTGATGCGTGAG 60.050 44.000 0.00 0.00 0.00 3.51
684 2015 5.050091 GTGGTAGATAAATTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
685 2016 5.057149 GGTAGATAAATTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
686 2017 5.177696 GGTAGATAAATTGATGCGTGAGGTC 59.822 44.000 0.00 0.00 0.00 3.85
687 2018 4.130118 AGATAAATTGATGCGTGAGGTCC 58.870 43.478 0.00 0.00 0.00 4.46
688 2019 1.086696 AAATTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
695 2026 2.342279 CGTGAGGTCCGCTCCAAA 59.658 61.111 0.00 0.00 0.00 3.28
696 2027 1.301401 CGTGAGGTCCGCTCCAAAA 60.301 57.895 0.00 0.00 0.00 2.44
697 2028 0.673644 CGTGAGGTCCGCTCCAAAAT 60.674 55.000 0.00 0.00 0.00 1.82
698 2029 1.534729 GTGAGGTCCGCTCCAAAATT 58.465 50.000 0.00 0.00 0.00 1.82
699 2030 1.468914 GTGAGGTCCGCTCCAAAATTC 59.531 52.381 0.00 0.00 0.00 2.17
700 2031 1.073125 TGAGGTCCGCTCCAAAATTCA 59.927 47.619 0.00 0.00 0.00 2.57
701 2032 2.159382 GAGGTCCGCTCCAAAATTCAA 58.841 47.619 0.00 0.00 0.00 2.69
702 2033 1.886542 AGGTCCGCTCCAAAATTCAAC 59.113 47.619 0.00 0.00 0.00 3.18
703 2034 1.886542 GGTCCGCTCCAAAATTCAACT 59.113 47.619 0.00 0.00 0.00 3.16
704 2035 2.095212 GGTCCGCTCCAAAATTCAACTC 60.095 50.000 0.00 0.00 0.00 3.01
705 2036 2.552315 GTCCGCTCCAAAATTCAACTCA 59.448 45.455 0.00 0.00 0.00 3.41
706 2037 3.191371 GTCCGCTCCAAAATTCAACTCAT 59.809 43.478 0.00 0.00 0.00 2.90
707 2038 3.826157 TCCGCTCCAAAATTCAACTCATT 59.174 39.130 0.00 0.00 0.00 2.57
708 2039 4.280677 TCCGCTCCAAAATTCAACTCATTT 59.719 37.500 0.00 0.00 0.00 2.32
709 2040 4.386652 CCGCTCCAAAATTCAACTCATTTG 59.613 41.667 0.00 0.00 36.42 2.32
722 2053 9.775854 ATTCAACTCATTTGGATATCTGAGTAG 57.224 33.333 19.89 7.52 45.63 2.57
723 2054 7.730084 TCAACTCATTTGGATATCTGAGTAGG 58.270 38.462 19.89 16.13 45.63 3.18
724 2055 6.107901 ACTCATTTGGATATCTGAGTAGGC 57.892 41.667 18.75 0.00 44.80 3.93
725 2056 5.012561 ACTCATTTGGATATCTGAGTAGGCC 59.987 44.000 18.75 0.00 44.80 5.19
726 2057 5.158141 TCATTTGGATATCTGAGTAGGCCT 58.842 41.667 11.78 11.78 0.00 5.19
727 2058 5.247110 TCATTTGGATATCTGAGTAGGCCTC 59.753 44.000 9.68 0.21 40.89 4.70
728 2059 2.796557 TGGATATCTGAGTAGGCCTCG 58.203 52.381 9.68 0.00 43.64 4.63
729 2060 2.096248 GGATATCTGAGTAGGCCTCGG 58.904 57.143 9.68 0.00 46.39 4.63
730 2061 1.474879 GATATCTGAGTAGGCCTCGGC 59.525 57.143 9.68 0.05 44.91 5.54
731 2062 0.185175 TATCTGAGTAGGCCTCGGCA 59.815 55.000 9.68 4.65 44.91 5.69
732 2063 0.687757 ATCTGAGTAGGCCTCGGCAA 60.688 55.000 9.68 0.00 44.91 4.52
733 2064 0.902984 TCTGAGTAGGCCTCGGCAAA 60.903 55.000 9.68 0.00 44.91 3.68
734 2065 0.036388 CTGAGTAGGCCTCGGCAAAA 60.036 55.000 9.68 0.00 43.64 2.44
735 2066 0.398696 TGAGTAGGCCTCGGCAAAAA 59.601 50.000 9.68 0.00 43.64 1.94
755 2086 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
756 2087 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
757 2088 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
758 2089 3.951680 AGACAAATCGGGTCAAAACAGTT 59.048 39.130 0.00 0.00 37.74 3.16
759 2090 4.401202 AGACAAATCGGGTCAAAACAGTTT 59.599 37.500 0.00 0.00 37.74 2.66
760 2091 4.429108 ACAAATCGGGTCAAAACAGTTTG 58.571 39.130 0.00 0.00 44.71 2.93
761 2092 4.081917 ACAAATCGGGTCAAAACAGTTTGT 60.082 37.500 0.00 0.00 43.90 2.83
762 2093 3.708563 ATCGGGTCAAAACAGTTTGTG 57.291 42.857 0.00 1.09 43.90 3.33
763 2094 2.712709 TCGGGTCAAAACAGTTTGTGA 58.287 42.857 0.00 3.41 43.90 3.58
764 2095 3.082548 TCGGGTCAAAACAGTTTGTGAA 58.917 40.909 0.00 0.00 43.90 3.18
765 2096 3.119779 TCGGGTCAAAACAGTTTGTGAAC 60.120 43.478 13.61 13.61 43.90 3.18
766 2097 3.366476 CGGGTCAAAACAGTTTGTGAACA 60.366 43.478 19.36 0.00 43.90 3.18
767 2098 4.173256 GGGTCAAAACAGTTTGTGAACAG 58.827 43.478 19.36 1.19 43.90 3.16
768 2099 4.321675 GGGTCAAAACAGTTTGTGAACAGT 60.322 41.667 19.36 0.00 43.90 3.55
769 2100 5.106078 GGGTCAAAACAGTTTGTGAACAGTA 60.106 40.000 19.36 0.00 43.90 2.74
770 2101 6.383415 GGTCAAAACAGTTTGTGAACAGTAA 58.617 36.000 15.66 0.00 43.90 2.24
771 2102 6.864165 GGTCAAAACAGTTTGTGAACAGTAAA 59.136 34.615 15.66 0.00 43.90 2.01
772 2103 7.148869 GGTCAAAACAGTTTGTGAACAGTAAAC 60.149 37.037 15.66 0.00 43.90 2.01
773 2104 7.593644 GTCAAAACAGTTTGTGAACAGTAAACT 59.406 33.333 0.00 9.67 43.90 2.66
774 2105 8.138712 TCAAAACAGTTTGTGAACAGTAAACTT 58.861 29.630 0.00 5.03 43.90 2.66
775 2106 8.760569 CAAAACAGTTTGTGAACAGTAAACTTT 58.239 29.630 0.00 6.16 41.30 2.66
776 2107 8.880878 AAACAGTTTGTGAACAGTAAACTTTT 57.119 26.923 0.00 10.08 41.30 2.27
777 2108 8.880878 AACAGTTTGTGAACAGTAAACTTTTT 57.119 26.923 11.65 7.66 41.30 1.94
778 2109 8.515473 ACAGTTTGTGAACAGTAAACTTTTTC 57.485 30.769 11.65 0.00 41.30 2.29
779 2110 8.138712 ACAGTTTGTGAACAGTAAACTTTTTCA 58.861 29.630 11.65 1.45 41.30 2.69
780 2111 8.424731 CAGTTTGTGAACAGTAAACTTTTTCAC 58.575 33.333 18.96 18.96 41.30 3.18
781 2112 8.138712 AGTTTGTGAACAGTAAACTTTTTCACA 58.861 29.630 22.04 22.04 45.39 3.58
782 2113 8.424731 GTTTGTGAACAGTAAACTTTTTCACAG 58.575 33.333 23.36 0.00 46.36 3.66
783 2114 7.441890 TGTGAACAGTAAACTTTTTCACAGA 57.558 32.000 22.04 9.70 43.92 3.41
784 2115 7.302524 TGTGAACAGTAAACTTTTTCACAGAC 58.697 34.615 22.04 7.34 43.92 3.51
785 2116 6.745907 GTGAACAGTAAACTTTTTCACAGACC 59.254 38.462 20.00 3.18 41.54 3.85
786 2117 5.830000 ACAGTAAACTTTTTCACAGACCC 57.170 39.130 0.00 0.00 0.00 4.46
787 2118 4.643334 ACAGTAAACTTTTTCACAGACCCC 59.357 41.667 0.00 0.00 0.00 4.95
788 2119 3.881089 AGTAAACTTTTTCACAGACCCCG 59.119 43.478 0.00 0.00 0.00 5.73
789 2120 2.721425 AACTTTTTCACAGACCCCGA 57.279 45.000 0.00 0.00 0.00 5.14
790 2121 2.951229 ACTTTTTCACAGACCCCGAT 57.049 45.000 0.00 0.00 0.00 4.18
791 2122 3.223674 ACTTTTTCACAGACCCCGATT 57.776 42.857 0.00 0.00 0.00 3.34
792 2123 3.562182 ACTTTTTCACAGACCCCGATTT 58.438 40.909 0.00 0.00 0.00 2.17
793 2124 3.958147 ACTTTTTCACAGACCCCGATTTT 59.042 39.130 0.00 0.00 0.00 1.82
794 2125 4.202111 ACTTTTTCACAGACCCCGATTTTG 60.202 41.667 0.00 0.00 0.00 2.44
795 2126 2.649531 TTCACAGACCCCGATTTTGT 57.350 45.000 0.00 0.00 0.00 2.83
796 2127 2.178912 TCACAGACCCCGATTTTGTC 57.821 50.000 0.00 0.00 0.00 3.18
797 2128 1.697432 TCACAGACCCCGATTTTGTCT 59.303 47.619 0.00 0.00 39.86 3.41
798 2129 2.105821 TCACAGACCCCGATTTTGTCTT 59.894 45.455 0.00 0.00 37.25 3.01
799 2130 2.884639 CACAGACCCCGATTTTGTCTTT 59.115 45.455 0.00 0.00 37.25 2.52
800 2131 3.317993 CACAGACCCCGATTTTGTCTTTT 59.682 43.478 0.00 0.00 37.25 2.27
801 2132 3.958147 ACAGACCCCGATTTTGTCTTTTT 59.042 39.130 0.00 0.00 37.25 1.94
818 2149 3.865011 TTTTTGCACAGACTTGCTCAA 57.135 38.095 9.86 2.78 43.41 3.02
819 2150 3.865011 TTTTGCACAGACTTGCTCAAA 57.135 38.095 9.86 7.06 43.41 2.69
820 2151 4.389890 TTTTGCACAGACTTGCTCAAAT 57.610 36.364 9.86 0.00 43.41 2.32
821 2152 3.358707 TTGCACAGACTTGCTCAAATG 57.641 42.857 9.86 0.00 43.41 2.32
822 2153 2.300433 TGCACAGACTTGCTCAAATGT 58.700 42.857 9.86 0.00 43.41 2.71
823 2154 2.291465 TGCACAGACTTGCTCAAATGTC 59.709 45.455 9.86 0.00 43.41 3.06
824 2155 2.351157 GCACAGACTTGCTCAAATGTCC 60.351 50.000 0.00 0.00 39.59 4.02
825 2156 2.880268 CACAGACTTGCTCAAATGTCCA 59.120 45.455 0.00 0.00 0.00 4.02
826 2157 3.316029 CACAGACTTGCTCAAATGTCCAA 59.684 43.478 0.00 0.00 0.00 3.53
827 2158 3.953612 ACAGACTTGCTCAAATGTCCAAA 59.046 39.130 0.00 0.00 0.00 3.28
828 2159 4.202050 ACAGACTTGCTCAAATGTCCAAAC 60.202 41.667 0.00 0.00 0.00 2.93
829 2160 3.003689 AGACTTGCTCAAATGTCCAAACG 59.996 43.478 0.00 0.00 0.00 3.60
830 2161 2.948979 ACTTGCTCAAATGTCCAAACGA 59.051 40.909 0.00 0.00 0.00 3.85
831 2162 3.003689 ACTTGCTCAAATGTCCAAACGAG 59.996 43.478 0.00 0.00 0.00 4.18
832 2163 2.571212 TGCTCAAATGTCCAAACGAGT 58.429 42.857 0.00 0.00 0.00 4.18
833 2164 2.948979 TGCTCAAATGTCCAAACGAGTT 59.051 40.909 0.00 0.00 0.00 3.01
834 2165 3.243035 TGCTCAAATGTCCAAACGAGTTG 60.243 43.478 0.00 0.00 36.94 3.16
835 2166 3.003275 GCTCAAATGTCCAAACGAGTTGA 59.997 43.478 5.36 0.00 39.87 3.18
836 2167 4.497340 GCTCAAATGTCCAAACGAGTTGAA 60.497 41.667 5.36 0.00 39.87 2.69
837 2168 5.762045 CTCAAATGTCCAAACGAGTTGAAT 58.238 37.500 5.36 0.00 39.87 2.57
838 2169 6.142818 TCAAATGTCCAAACGAGTTGAATT 57.857 33.333 5.36 0.00 39.87 2.17
839 2170 6.568869 TCAAATGTCCAAACGAGTTGAATTT 58.431 32.000 5.36 5.93 39.87 1.82
840 2171 7.038659 TCAAATGTCCAAACGAGTTGAATTTT 58.961 30.769 5.36 0.00 39.87 1.82
841 2172 6.826893 AATGTCCAAACGAGTTGAATTTTG 57.173 33.333 5.36 0.00 39.87 2.44
842 2173 4.109050 TGTCCAAACGAGTTGAATTTTGC 58.891 39.130 5.36 0.00 39.87 3.68
843 2174 4.109050 GTCCAAACGAGTTGAATTTTGCA 58.891 39.130 5.36 0.00 39.87 4.08
844 2175 4.207019 GTCCAAACGAGTTGAATTTTGCAG 59.793 41.667 5.36 0.00 39.87 4.41
845 2176 3.060339 CCAAACGAGTTGAATTTTGCAGC 60.060 43.478 5.36 0.00 39.87 5.25
846 2177 2.036556 ACGAGTTGAATTTTGCAGCG 57.963 45.000 0.00 0.00 0.00 5.18
847 2178 1.601903 ACGAGTTGAATTTTGCAGCGA 59.398 42.857 0.00 0.00 0.00 4.93
848 2179 2.032799 ACGAGTTGAATTTTGCAGCGAA 59.967 40.909 0.00 0.00 0.00 4.70
849 2180 2.401720 CGAGTTGAATTTTGCAGCGAAC 59.598 45.455 0.00 0.00 0.00 3.95
850 2181 2.726241 GAGTTGAATTTTGCAGCGAACC 59.274 45.455 0.00 0.00 0.00 3.62
851 2182 2.362077 AGTTGAATTTTGCAGCGAACCT 59.638 40.909 0.00 0.00 0.00 3.50
852 2183 2.704725 TGAATTTTGCAGCGAACCTC 57.295 45.000 0.00 0.00 0.00 3.85
853 2184 1.952990 TGAATTTTGCAGCGAACCTCA 59.047 42.857 0.00 0.00 0.00 3.86
854 2185 2.287547 TGAATTTTGCAGCGAACCTCAC 60.288 45.455 0.00 0.00 0.00 3.51
855 2186 0.238289 ATTTTGCAGCGAACCTCACG 59.762 50.000 0.00 0.00 0.00 4.35
862 2193 4.979204 CGAACCTCACGCACCTAA 57.021 55.556 0.00 0.00 0.00 2.69
863 2194 3.436001 CGAACCTCACGCACCTAAT 57.564 52.632 0.00 0.00 0.00 1.73
864 2195 1.722011 CGAACCTCACGCACCTAATT 58.278 50.000 0.00 0.00 0.00 1.40
865 2196 2.883574 CGAACCTCACGCACCTAATTA 58.116 47.619 0.00 0.00 0.00 1.40
866 2197 3.454375 CGAACCTCACGCACCTAATTAT 58.546 45.455 0.00 0.00 0.00 1.28
867 2198 3.489785 CGAACCTCACGCACCTAATTATC 59.510 47.826 0.00 0.00 0.00 1.75
868 2199 4.694339 GAACCTCACGCACCTAATTATCT 58.306 43.478 0.00 0.00 0.00 1.98
869 2200 5.506815 CGAACCTCACGCACCTAATTATCTA 60.507 44.000 0.00 0.00 0.00 1.98
870 2201 5.197682 ACCTCACGCACCTAATTATCTAC 57.802 43.478 0.00 0.00 0.00 2.59
871 2202 4.038883 ACCTCACGCACCTAATTATCTACC 59.961 45.833 0.00 0.00 0.00 3.18
872 2203 4.038763 CCTCACGCACCTAATTATCTACCA 59.961 45.833 0.00 0.00 0.00 3.25
873 2204 4.940463 TCACGCACCTAATTATCTACCAC 58.060 43.478 0.00 0.00 0.00 4.16
874 2205 4.056050 CACGCACCTAATTATCTACCACC 58.944 47.826 0.00 0.00 0.00 4.61
875 2206 3.070590 ACGCACCTAATTATCTACCACCC 59.929 47.826 0.00 0.00 0.00 4.61
876 2207 3.660865 GCACCTAATTATCTACCACCCG 58.339 50.000 0.00 0.00 0.00 5.28
877 2208 3.322828 GCACCTAATTATCTACCACCCGA 59.677 47.826 0.00 0.00 0.00 5.14
878 2209 4.202284 GCACCTAATTATCTACCACCCGAA 60.202 45.833 0.00 0.00 0.00 4.30
879 2210 5.512576 GCACCTAATTATCTACCACCCGAAT 60.513 44.000 0.00 0.00 0.00 3.34
880 2211 5.932303 CACCTAATTATCTACCACCCGAATG 59.068 44.000 0.00 0.00 0.00 2.67
881 2212 5.605488 ACCTAATTATCTACCACCCGAATGT 59.395 40.000 0.00 0.00 0.00 2.71
882 2213 6.100714 ACCTAATTATCTACCACCCGAATGTT 59.899 38.462 0.00 0.00 0.00 2.71
883 2214 6.996282 CCTAATTATCTACCACCCGAATGTTT 59.004 38.462 0.00 0.00 0.00 2.83
884 2215 7.501225 CCTAATTATCTACCACCCGAATGTTTT 59.499 37.037 0.00 0.00 0.00 2.43
885 2216 7.712204 AATTATCTACCACCCGAATGTTTTT 57.288 32.000 0.00 0.00 0.00 1.94
947 2278 4.819761 GAGCGCGGGTGCAGATGA 62.820 66.667 8.83 0.00 42.97 2.92
948 2279 4.827087 AGCGCGGGTGCAGATGAG 62.827 66.667 8.83 0.00 42.97 2.90
953 2284 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
954 2285 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
955 2286 4.101448 GTGCAGATGAGCCCGGGT 62.101 66.667 24.63 9.10 0.00 5.28
956 2287 4.100084 TGCAGATGAGCCCGGGTG 62.100 66.667 24.63 12.63 0.00 4.61
958 2289 4.100084 CAGATGAGCCCGGGTGCA 62.100 66.667 24.63 20.72 0.00 4.57
959 2290 3.790437 AGATGAGCCCGGGTGCAG 61.790 66.667 24.63 0.00 0.00 4.41
960 2291 3.785859 GATGAGCCCGGGTGCAGA 61.786 66.667 24.63 1.93 0.00 4.26
961 2292 3.092511 ATGAGCCCGGGTGCAGAT 61.093 61.111 24.63 4.52 0.00 2.90
962 2293 2.615227 GATGAGCCCGGGTGCAGATT 62.615 60.000 24.63 5.68 0.00 2.40
963 2294 2.514824 GAGCCCGGGTGCAGATTC 60.515 66.667 24.63 1.65 0.00 2.52
964 2295 4.473520 AGCCCGGGTGCAGATTCG 62.474 66.667 24.63 0.00 0.00 3.34
995 2329 3.526534 TCGATCAACACACAACACAAGA 58.473 40.909 0.00 0.00 0.00 3.02
1057 2394 0.108424 CCTTCTCCTCCTGCACTTCG 60.108 60.000 0.00 0.00 0.00 3.79
1089 2426 2.039405 GGAAGCCAGAGCACAGCAG 61.039 63.158 0.00 0.00 43.56 4.24
1414 2795 1.006688 CCACGACATCACGGTGACA 60.007 57.895 13.92 0.00 37.61 3.58
1421 2802 0.729116 CATCACGGTGACATTCCAGC 59.271 55.000 13.92 0.00 0.00 4.85
1621 3002 0.606401 ACCATTTCCTGCACGAGGTG 60.606 55.000 0.00 0.00 43.37 4.00
1694 3153 5.740569 CAGATTTGAACTAATCCGTTGCATG 59.259 40.000 0.00 0.00 35.56 4.06
1698 3157 3.181498 TGAACTAATCCGTTGCATGCATG 60.181 43.478 23.37 22.70 0.00 4.06
1923 3382 2.945447 TACCGACCACATTTAGACCG 57.055 50.000 0.00 0.00 0.00 4.79
2204 3952 4.015084 CCTTCAGAAGTTGAATGGCAGAT 58.985 43.478 9.41 0.00 44.48 2.90
2462 4230 1.590238 GCAAATCGATCGTGACTCTGG 59.410 52.381 15.94 0.00 0.00 3.86
2494 4263 0.972883 TATTTGTTGGCCTTGGCACC 59.027 50.000 14.04 1.11 37.98 5.01
2510 4279 4.448210 TGGCACCGTTCTTATAATTCCTC 58.552 43.478 0.00 0.00 0.00 3.71
2529 4298 5.849510 TCCTCAATAAAGTCGAAGTCACAA 58.150 37.500 0.00 0.00 0.00 3.33
2532 4301 6.018262 CCTCAATAAAGTCGAAGTCACAAACA 60.018 38.462 0.00 0.00 0.00 2.83
2533 4302 7.310072 TCAATAAAGTCGAAGTCACAAACAA 57.690 32.000 0.00 0.00 0.00 2.83
2534 4303 7.753659 TCAATAAAGTCGAAGTCACAAACAAA 58.246 30.769 0.00 0.00 0.00 2.83
2536 4305 8.471457 CAATAAAGTCGAAGTCACAAACAAATG 58.529 33.333 0.00 0.00 0.00 2.32
2538 4307 3.315191 AGTCGAAGTCACAAACAAATGGG 59.685 43.478 0.00 0.00 0.00 4.00
2541 4682 5.180492 GTCGAAGTCACAAACAAATGGGATA 59.820 40.000 0.00 0.00 34.71 2.59
2544 4685 5.964958 AGTCACAAACAAATGGGATACAG 57.035 39.130 0.00 0.00 34.71 2.74
2546 4687 4.764823 GTCACAAACAAATGGGATACAGGA 59.235 41.667 0.00 0.00 34.71 3.86
2551 4692 3.825328 ACAAATGGGATACAGGAGCATC 58.175 45.455 0.00 0.00 39.74 3.91
2563 4704 0.761802 GGAGCATCTCCCCTAGGTTG 59.238 60.000 8.29 0.00 44.36 3.77
2570 4711 4.103311 GCATCTCCCCTAGGTTGTTCTTAT 59.897 45.833 8.29 0.00 0.00 1.73
2572 4713 6.519213 GCATCTCCCCTAGGTTGTTCTTATAG 60.519 46.154 8.29 0.00 0.00 1.31
2574 4715 6.509386 TCTCCCCTAGGTTGTTCTTATAGTT 58.491 40.000 8.29 0.00 0.00 2.24
2575 4716 6.610425 TCTCCCCTAGGTTGTTCTTATAGTTC 59.390 42.308 8.29 0.00 0.00 3.01
2576 4717 6.509386 TCCCCTAGGTTGTTCTTATAGTTCT 58.491 40.000 8.29 0.00 0.00 3.01
2577 4718 6.610425 TCCCCTAGGTTGTTCTTATAGTTCTC 59.390 42.308 8.29 0.00 0.00 2.87
2578 4719 6.461231 CCCCTAGGTTGTTCTTATAGTTCTCG 60.461 46.154 8.29 0.00 0.00 4.04
2613 4891 2.677542 AGGCTGTACGAGATGGGATA 57.322 50.000 0.00 0.00 0.00 2.59
2692 4970 0.597377 TATCACATAGGCTGCGCGTG 60.597 55.000 8.43 2.58 0.00 5.34
2701 4979 2.571757 CTGCGCGTGAAGGTAGGA 59.428 61.111 8.43 0.00 0.00 2.94
2767 5045 5.679906 CCAACAAAACTAGATTCACGTGAG 58.320 41.667 19.11 9.27 0.00 3.51
2822 5458 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
2880 5516 4.664677 AGCACCGTGTGTCCGAGC 62.665 66.667 0.00 0.00 35.75 5.03
2953 5590 1.518774 GACGCCCCATCCTCGTAAA 59.481 57.895 0.00 0.00 36.50 2.01
2967 5710 0.662077 CGTAAAAGCAACCCCAACGC 60.662 55.000 0.00 0.00 0.00 4.84
2969 5712 1.102222 TAAAAGCAACCCCAACGCGT 61.102 50.000 5.58 5.58 0.00 6.01
2973 5716 2.740826 CAACCCCAACGCGTCGAT 60.741 61.111 14.44 0.00 0.00 3.59
2975 5718 3.945304 AACCCCAACGCGTCGATCC 62.945 63.158 14.44 0.00 0.00 3.36
2988 5731 1.261619 GTCGATCCATTTCATGTCCGC 59.738 52.381 0.00 0.00 0.00 5.54
2989 5732 1.134551 TCGATCCATTTCATGTCCGCA 60.135 47.619 0.00 0.00 0.00 5.69
2990 5733 1.003545 CGATCCATTTCATGTCCGCAC 60.004 52.381 0.00 0.00 0.00 5.34
3029 5772 1.174712 ATGCGCCCATAGTTCATGCC 61.175 55.000 4.18 0.00 32.84 4.40
3063 5806 1.079888 GCCCAAAAGTTCATGCCGG 60.080 57.895 0.00 0.00 0.00 6.13
3067 5810 0.031857 CAAAAGTTCATGCCGGCACA 59.968 50.000 35.50 19.73 0.00 4.57
3191 5934 1.352156 GAGTTCGACCACGCCATCAC 61.352 60.000 0.00 0.00 39.58 3.06
3192 5935 2.431771 TTCGACCACGCCATCACG 60.432 61.111 0.00 0.00 39.58 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.380867 GGTGTGCAATTTCCATCTGGTTAG 60.381 45.833 0.00 0.00 36.34 2.34
250 253 0.966370 GACCGAGACCTAGCCACACT 60.966 60.000 0.00 0.00 0.00 3.55
341 1656 5.963004 GTCGATGCTATATTCGTGAGATCTC 59.037 44.000 16.21 16.21 41.60 2.75
390 1705 9.295825 TCAAAAACAGGATTGCTAAATCTTAGA 57.704 29.630 0.00 0.00 41.74 2.10
393 1708 9.783081 ATTTCAAAAACAGGATTGCTAAATCTT 57.217 25.926 0.00 0.00 41.74 2.40
419 1735 0.684535 TCGGCTTTCTCACATGTGGA 59.315 50.000 25.16 17.68 0.00 4.02
552 1883 4.627467 GGATGAATTATCCGTTGATCGAGG 59.373 45.833 0.00 0.00 45.64 4.63
553 1884 5.769967 GGATGAATTATCCGTTGATCGAG 57.230 43.478 0.00 0.00 45.64 4.04
581 1912 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
582 1913 3.790437 AGGTGCAGATGAGCCCGG 61.790 66.667 0.00 0.00 32.32 5.73
583 1914 2.321263 ATCAGGTGCAGATGAGCCCG 62.321 60.000 6.88 0.00 32.32 6.13
584 1915 0.534652 GATCAGGTGCAGATGAGCCC 60.535 60.000 5.26 0.00 0.00 5.19
585 1916 0.179702 TGATCAGGTGCAGATGAGCC 59.820 55.000 12.39 0.00 30.86 4.70
586 1917 1.584175 CTGATCAGGTGCAGATGAGC 58.416 55.000 15.38 8.94 34.06 4.26
587 1918 1.134491 TGCTGATCAGGTGCAGATGAG 60.134 52.381 23.89 2.36 34.06 2.90
588 1919 0.906775 TGCTGATCAGGTGCAGATGA 59.093 50.000 23.89 3.40 34.06 2.92
589 1920 1.746470 TTGCTGATCAGGTGCAGATG 58.254 50.000 23.89 0.00 38.01 2.90
590 1921 2.502142 TTTGCTGATCAGGTGCAGAT 57.498 45.000 23.89 0.00 38.01 2.90
591 1922 2.275134 TTTTGCTGATCAGGTGCAGA 57.725 45.000 23.89 9.50 38.01 4.26
650 1981 6.893005 TCAATTTATCTACCACCCGGATTTTT 59.107 34.615 0.73 0.00 35.59 1.94
651 1982 6.428295 TCAATTTATCTACCACCCGGATTTT 58.572 36.000 0.73 0.00 35.59 1.82
652 1983 6.008696 TCAATTTATCTACCACCCGGATTT 57.991 37.500 0.73 0.00 35.59 2.17
653 1984 5.640158 TCAATTTATCTACCACCCGGATT 57.360 39.130 0.73 0.00 35.59 3.01
654 1985 5.560724 CATCAATTTATCTACCACCCGGAT 58.439 41.667 0.73 0.00 35.59 4.18
655 1986 4.745478 GCATCAATTTATCTACCACCCGGA 60.745 45.833 0.73 0.00 35.59 5.14
656 1987 3.502211 GCATCAATTTATCTACCACCCGG 59.498 47.826 0.00 0.00 38.77 5.73
657 1988 3.186409 CGCATCAATTTATCTACCACCCG 59.814 47.826 0.00 0.00 0.00 5.28
658 1989 4.024048 CACGCATCAATTTATCTACCACCC 60.024 45.833 0.00 0.00 0.00 4.61
659 1990 4.814234 TCACGCATCAATTTATCTACCACC 59.186 41.667 0.00 0.00 0.00 4.61
660 1991 5.050091 CCTCACGCATCAATTTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
661 1992 5.056480 CCTCACGCATCAATTTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
662 1993 5.057149 ACCTCACGCATCAATTTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
663 1994 5.177696 GGACCTCACGCATCAATTTATCTAC 59.822 44.000 0.00 0.00 0.00 2.59
664 1995 5.297547 GGACCTCACGCATCAATTTATCTA 58.702 41.667 0.00 0.00 0.00 1.98
665 1996 4.130118 GGACCTCACGCATCAATTTATCT 58.870 43.478 0.00 0.00 0.00 1.98
666 1997 3.059597 CGGACCTCACGCATCAATTTATC 60.060 47.826 0.00 0.00 0.00 1.75
667 1998 2.872245 CGGACCTCACGCATCAATTTAT 59.128 45.455 0.00 0.00 0.00 1.40
668 1999 2.276201 CGGACCTCACGCATCAATTTA 58.724 47.619 0.00 0.00 0.00 1.40
669 2000 1.086696 CGGACCTCACGCATCAATTT 58.913 50.000 0.00 0.00 0.00 1.82
670 2001 2.767536 CGGACCTCACGCATCAATT 58.232 52.632 0.00 0.00 0.00 2.32
671 2002 4.521075 CGGACCTCACGCATCAAT 57.479 55.556 0.00 0.00 0.00 2.57
678 2009 0.673644 ATTTTGGAGCGGACCTCACG 60.674 55.000 0.00 0.00 42.62 4.35
679 2010 1.468914 GAATTTTGGAGCGGACCTCAC 59.531 52.381 0.00 0.00 42.62 3.51
680 2011 1.073125 TGAATTTTGGAGCGGACCTCA 59.927 47.619 0.00 0.00 42.62 3.86
681 2012 1.821216 TGAATTTTGGAGCGGACCTC 58.179 50.000 0.00 0.00 39.98 3.85
682 2013 1.886542 GTTGAATTTTGGAGCGGACCT 59.113 47.619 0.00 0.00 0.00 3.85
683 2014 1.886542 AGTTGAATTTTGGAGCGGACC 59.113 47.619 0.00 0.00 0.00 4.46
684 2015 2.552315 TGAGTTGAATTTTGGAGCGGAC 59.448 45.455 0.00 0.00 0.00 4.79
685 2016 2.857483 TGAGTTGAATTTTGGAGCGGA 58.143 42.857 0.00 0.00 0.00 5.54
686 2017 3.855689 ATGAGTTGAATTTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
687 2018 5.505165 CAAATGAGTTGAATTTTGGAGCG 57.495 39.130 0.00 0.00 39.87 5.03
691 2022 9.309516 CAGATATCCAAATGAGTTGAATTTTGG 57.690 33.333 0.00 6.89 46.09 3.28
702 2033 5.248020 AGGCCTACTCAGATATCCAAATGAG 59.752 44.000 1.29 14.87 43.81 2.90
703 2034 5.158141 AGGCCTACTCAGATATCCAAATGA 58.842 41.667 1.29 0.00 0.00 2.57
704 2035 5.486526 GAGGCCTACTCAGATATCCAAATG 58.513 45.833 4.42 0.00 45.85 2.32
705 2036 4.221703 CGAGGCCTACTCAGATATCCAAAT 59.778 45.833 4.42 0.00 46.98 2.32
706 2037 3.574396 CGAGGCCTACTCAGATATCCAAA 59.426 47.826 4.42 0.00 46.98 3.28
707 2038 3.157881 CGAGGCCTACTCAGATATCCAA 58.842 50.000 4.42 0.00 46.98 3.53
708 2039 2.555448 CCGAGGCCTACTCAGATATCCA 60.555 54.545 4.42 0.00 46.98 3.41
709 2040 2.096248 CCGAGGCCTACTCAGATATCC 58.904 57.143 4.42 0.00 46.98 2.59
710 2041 1.474879 GCCGAGGCCTACTCAGATATC 59.525 57.143 4.42 0.00 46.98 1.63
711 2042 1.203063 TGCCGAGGCCTACTCAGATAT 60.203 52.381 4.42 0.00 46.98 1.63
712 2043 0.185175 TGCCGAGGCCTACTCAGATA 59.815 55.000 4.42 0.00 46.98 1.98
713 2044 0.687757 TTGCCGAGGCCTACTCAGAT 60.688 55.000 4.42 0.00 46.98 2.90
714 2045 0.902984 TTTGCCGAGGCCTACTCAGA 60.903 55.000 4.42 0.00 46.98 3.27
715 2046 0.036388 TTTTGCCGAGGCCTACTCAG 60.036 55.000 4.42 0.00 46.98 3.35
716 2047 0.398696 TTTTTGCCGAGGCCTACTCA 59.601 50.000 4.42 0.00 46.98 3.41
717 2048 3.243128 TTTTTGCCGAGGCCTACTC 57.757 52.632 4.42 0.00 43.02 2.59
732 2063 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
733 2064 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
734 2065 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
735 2066 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
736 2067 3.551846 ACTGTTTTGACCCGATTTGTCT 58.448 40.909 0.00 0.00 33.83 3.41
737 2068 3.982576 ACTGTTTTGACCCGATTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
738 2069 4.081917 ACAAACTGTTTTGACCCGATTTGT 60.082 37.500 2.41 0.00 44.38 2.83
739 2070 4.267452 CACAAACTGTTTTGACCCGATTTG 59.733 41.667 2.41 0.00 44.38 2.32
740 2071 4.158764 TCACAAACTGTTTTGACCCGATTT 59.841 37.500 2.41 0.00 44.38 2.17
741 2072 3.697045 TCACAAACTGTTTTGACCCGATT 59.303 39.130 2.41 0.00 44.38 3.34
742 2073 3.283751 TCACAAACTGTTTTGACCCGAT 58.716 40.909 2.41 0.00 44.38 4.18
743 2074 2.712709 TCACAAACTGTTTTGACCCGA 58.287 42.857 2.41 0.00 44.38 5.14
744 2075 3.175929 GTTCACAAACTGTTTTGACCCG 58.824 45.455 2.41 0.00 44.38 5.28
745 2076 4.173256 CTGTTCACAAACTGTTTTGACCC 58.827 43.478 2.41 5.58 44.38 4.46
746 2077 4.805219 ACTGTTCACAAACTGTTTTGACC 58.195 39.130 2.41 4.92 44.38 4.02
747 2078 7.593644 AGTTTACTGTTCACAAACTGTTTTGAC 59.406 33.333 2.41 1.36 44.38 3.18
748 2079 7.653647 AGTTTACTGTTCACAAACTGTTTTGA 58.346 30.769 2.41 8.24 44.38 2.69
749 2080 7.867445 AGTTTACTGTTCACAAACTGTTTTG 57.133 32.000 2.41 6.15 42.77 2.44
750 2081 8.880878 AAAGTTTACTGTTCACAAACTGTTTT 57.119 26.923 2.41 0.00 42.77 2.43
751 2082 8.880878 AAAAGTTTACTGTTCACAAACTGTTT 57.119 26.923 7.08 0.00 42.77 2.83
752 2083 8.880878 AAAAAGTTTACTGTTCACAAACTGTT 57.119 26.923 7.08 5.64 42.77 3.16
753 2084 8.138712 TGAAAAAGTTTACTGTTCACAAACTGT 58.861 29.630 7.08 6.18 45.85 3.55
754 2085 8.424731 GTGAAAAAGTTTACTGTTCACAAACTG 58.575 33.333 22.36 0.00 43.78 3.16
755 2086 8.138712 TGTGAAAAAGTTTACTGTTCACAAACT 58.861 29.630 25.11 8.83 46.89 2.66
756 2087 8.288217 TGTGAAAAAGTTTACTGTTCACAAAC 57.712 30.769 25.11 6.97 46.89 2.93
760 2091 6.745907 GGTCTGTGAAAAAGTTTACTGTTCAC 59.254 38.462 21.39 21.39 44.16 3.18
761 2092 6.127842 GGGTCTGTGAAAAAGTTTACTGTTCA 60.128 38.462 5.58 5.58 32.00 3.18
762 2093 6.263344 GGGTCTGTGAAAAAGTTTACTGTTC 58.737 40.000 0.00 0.00 0.00 3.18
763 2094 5.126545 GGGGTCTGTGAAAAAGTTTACTGTT 59.873 40.000 0.00 0.00 0.00 3.16
764 2095 4.643334 GGGGTCTGTGAAAAAGTTTACTGT 59.357 41.667 0.00 0.00 0.00 3.55
765 2096 4.261031 CGGGGTCTGTGAAAAAGTTTACTG 60.261 45.833 0.00 0.00 0.00 2.74
766 2097 3.881089 CGGGGTCTGTGAAAAAGTTTACT 59.119 43.478 0.00 0.00 0.00 2.24
767 2098 3.878699 TCGGGGTCTGTGAAAAAGTTTAC 59.121 43.478 0.00 0.00 0.00 2.01
768 2099 4.153673 TCGGGGTCTGTGAAAAAGTTTA 57.846 40.909 0.00 0.00 0.00 2.01
769 2100 3.007473 TCGGGGTCTGTGAAAAAGTTT 57.993 42.857 0.00 0.00 0.00 2.66
770 2101 2.721425 TCGGGGTCTGTGAAAAAGTT 57.279 45.000 0.00 0.00 0.00 2.66
771 2102 2.951229 ATCGGGGTCTGTGAAAAAGT 57.049 45.000 0.00 0.00 0.00 2.66
772 2103 4.202111 ACAAAATCGGGGTCTGTGAAAAAG 60.202 41.667 0.00 0.00 0.00 2.27
773 2104 3.702045 ACAAAATCGGGGTCTGTGAAAAA 59.298 39.130 0.00 0.00 0.00 1.94
774 2105 3.292460 ACAAAATCGGGGTCTGTGAAAA 58.708 40.909 0.00 0.00 0.00 2.29
775 2106 2.882137 GACAAAATCGGGGTCTGTGAAA 59.118 45.455 0.00 0.00 0.00 2.69
776 2107 2.105821 AGACAAAATCGGGGTCTGTGAA 59.894 45.455 0.00 0.00 40.21 3.18
777 2108 1.697432 AGACAAAATCGGGGTCTGTGA 59.303 47.619 0.00 0.00 40.21 3.58
778 2109 2.185004 AGACAAAATCGGGGTCTGTG 57.815 50.000 0.00 0.00 40.21 3.66
779 2110 2.951229 AAGACAAAATCGGGGTCTGT 57.049 45.000 0.00 0.00 40.80 3.41
780 2111 4.584327 AAAAAGACAAAATCGGGGTCTG 57.416 40.909 0.00 0.00 40.80 3.51
803 2134 2.351157 GGACATTTGAGCAAGTCTGTGC 60.351 50.000 0.00 0.00 45.28 4.57
804 2135 2.880268 TGGACATTTGAGCAAGTCTGTG 59.120 45.455 0.00 0.00 0.00 3.66
805 2136 3.213206 TGGACATTTGAGCAAGTCTGT 57.787 42.857 0.00 0.00 0.00 3.41
806 2137 4.293415 GTTTGGACATTTGAGCAAGTCTG 58.707 43.478 0.00 0.00 0.00 3.51
807 2138 3.003689 CGTTTGGACATTTGAGCAAGTCT 59.996 43.478 0.00 0.00 0.00 3.24
808 2139 3.003275 TCGTTTGGACATTTGAGCAAGTC 59.997 43.478 0.00 0.00 0.00 3.01
809 2140 2.948979 TCGTTTGGACATTTGAGCAAGT 59.051 40.909 0.00 0.00 0.00 3.16
810 2141 3.003689 ACTCGTTTGGACATTTGAGCAAG 59.996 43.478 0.00 0.00 0.00 4.01
811 2142 2.948979 ACTCGTTTGGACATTTGAGCAA 59.051 40.909 0.00 0.00 0.00 3.91
812 2143 2.571212 ACTCGTTTGGACATTTGAGCA 58.429 42.857 0.00 0.00 0.00 4.26
813 2144 3.003275 TCAACTCGTTTGGACATTTGAGC 59.997 43.478 0.69 0.00 35.69 4.26
814 2145 4.811555 TCAACTCGTTTGGACATTTGAG 57.188 40.909 0.69 0.00 35.69 3.02
815 2146 5.766150 ATTCAACTCGTTTGGACATTTGA 57.234 34.783 0.69 0.00 35.69 2.69
816 2147 6.826893 AAATTCAACTCGTTTGGACATTTG 57.173 33.333 0.69 0.00 35.69 2.32
817 2148 6.238076 GCAAAATTCAACTCGTTTGGACATTT 60.238 34.615 0.00 1.78 35.69 2.32
818 2149 5.234116 GCAAAATTCAACTCGTTTGGACATT 59.766 36.000 0.00 0.00 35.69 2.71
819 2150 4.744631 GCAAAATTCAACTCGTTTGGACAT 59.255 37.500 0.00 0.00 35.69 3.06
820 2151 4.109050 GCAAAATTCAACTCGTTTGGACA 58.891 39.130 0.00 0.00 35.69 4.02
821 2152 4.109050 TGCAAAATTCAACTCGTTTGGAC 58.891 39.130 0.00 0.00 35.69 4.02
822 2153 4.358851 CTGCAAAATTCAACTCGTTTGGA 58.641 39.130 0.00 0.00 35.69 3.53
823 2154 3.060339 GCTGCAAAATTCAACTCGTTTGG 60.060 43.478 0.00 0.00 35.69 3.28
824 2155 3.360956 CGCTGCAAAATTCAACTCGTTTG 60.361 43.478 0.00 0.00 36.42 2.93
825 2156 2.788786 CGCTGCAAAATTCAACTCGTTT 59.211 40.909 0.00 0.00 0.00 3.60
826 2157 2.032799 TCGCTGCAAAATTCAACTCGTT 59.967 40.909 0.00 0.00 0.00 3.85
827 2158 1.601903 TCGCTGCAAAATTCAACTCGT 59.398 42.857 0.00 0.00 0.00 4.18
828 2159 2.314561 TCGCTGCAAAATTCAACTCG 57.685 45.000 0.00 0.00 0.00 4.18
829 2160 2.726241 GGTTCGCTGCAAAATTCAACTC 59.274 45.455 0.00 0.00 0.00 3.01
830 2161 2.362077 AGGTTCGCTGCAAAATTCAACT 59.638 40.909 0.00 0.00 0.00 3.16
831 2162 2.726241 GAGGTTCGCTGCAAAATTCAAC 59.274 45.455 0.00 0.00 0.00 3.18
832 2163 2.360483 TGAGGTTCGCTGCAAAATTCAA 59.640 40.909 0.00 0.00 0.00 2.69
833 2164 1.952990 TGAGGTTCGCTGCAAAATTCA 59.047 42.857 0.00 0.07 0.00 2.57
834 2165 2.319472 GTGAGGTTCGCTGCAAAATTC 58.681 47.619 0.00 0.00 0.00 2.17
835 2166 1.334960 CGTGAGGTTCGCTGCAAAATT 60.335 47.619 0.00 0.00 0.00 1.82
836 2167 0.238289 CGTGAGGTTCGCTGCAAAAT 59.762 50.000 0.00 0.00 0.00 1.82
837 2168 1.646540 CGTGAGGTTCGCTGCAAAA 59.353 52.632 0.00 0.00 0.00 2.44
838 2169 3.329231 CGTGAGGTTCGCTGCAAA 58.671 55.556 0.00 0.00 0.00 3.68
845 2176 1.722011 AATTAGGTGCGTGAGGTTCG 58.278 50.000 0.00 0.00 0.00 3.95
846 2177 4.694339 AGATAATTAGGTGCGTGAGGTTC 58.306 43.478 0.00 0.00 0.00 3.62
847 2178 4.755266 AGATAATTAGGTGCGTGAGGTT 57.245 40.909 0.00 0.00 0.00 3.50
848 2179 4.038883 GGTAGATAATTAGGTGCGTGAGGT 59.961 45.833 0.00 0.00 0.00 3.85
849 2180 4.038763 TGGTAGATAATTAGGTGCGTGAGG 59.961 45.833 0.00 0.00 0.00 3.86
850 2181 4.982916 GTGGTAGATAATTAGGTGCGTGAG 59.017 45.833 0.00 0.00 0.00 3.51
851 2182 4.202182 GGTGGTAGATAATTAGGTGCGTGA 60.202 45.833 0.00 0.00 0.00 4.35
852 2183 4.056050 GGTGGTAGATAATTAGGTGCGTG 58.944 47.826 0.00 0.00 0.00 5.34
853 2184 3.070590 GGGTGGTAGATAATTAGGTGCGT 59.929 47.826 0.00 0.00 0.00 5.24
854 2185 3.660865 GGGTGGTAGATAATTAGGTGCG 58.339 50.000 0.00 0.00 0.00 5.34
855 2186 3.322828 TCGGGTGGTAGATAATTAGGTGC 59.677 47.826 0.00 0.00 0.00 5.01
856 2187 5.540400 TTCGGGTGGTAGATAATTAGGTG 57.460 43.478 0.00 0.00 0.00 4.00
857 2188 5.605488 ACATTCGGGTGGTAGATAATTAGGT 59.395 40.000 0.00 0.00 0.00 3.08
858 2189 6.110411 ACATTCGGGTGGTAGATAATTAGG 57.890 41.667 0.00 0.00 0.00 2.69
859 2190 8.446599 AAAACATTCGGGTGGTAGATAATTAG 57.553 34.615 0.00 0.00 0.00 1.73
860 2191 8.810990 AAAAACATTCGGGTGGTAGATAATTA 57.189 30.769 0.00 0.00 0.00 1.40
861 2192 7.712204 AAAAACATTCGGGTGGTAGATAATT 57.288 32.000 0.00 0.00 0.00 1.40
930 2261 4.819761 TCATCTGCACCCGCGCTC 62.820 66.667 5.56 0.00 42.97 5.03
931 2262 4.827087 CTCATCTGCACCCGCGCT 62.827 66.667 5.56 0.00 42.97 5.92
936 2267 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
937 2268 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
938 2269 4.101448 ACCCGGGCTCATCTGCAC 62.101 66.667 24.08 0.00 34.04 4.57
939 2270 4.100084 CACCCGGGCTCATCTGCA 62.100 66.667 24.08 0.00 34.04 4.41
941 2272 4.100084 TGCACCCGGGCTCATCTG 62.100 66.667 24.08 11.82 34.04 2.90
942 2273 3.790437 CTGCACCCGGGCTCATCT 61.790 66.667 24.08 0.00 34.04 2.90
943 2274 2.615227 AATCTGCACCCGGGCTCATC 62.615 60.000 24.08 5.69 34.04 2.92
944 2275 2.615227 GAATCTGCACCCGGGCTCAT 62.615 60.000 24.08 3.38 34.04 2.90
945 2276 3.329542 GAATCTGCACCCGGGCTCA 62.330 63.158 24.08 17.97 34.04 4.26
946 2277 2.514824 GAATCTGCACCCGGGCTC 60.515 66.667 24.08 13.62 34.04 4.70
947 2278 4.473520 CGAATCTGCACCCGGGCT 62.474 66.667 24.08 4.79 34.04 5.19
957 2288 1.880340 GAGGAGTGCGGCGAATCTG 60.880 63.158 12.98 0.00 0.00 2.90
958 2289 2.496817 GAGGAGTGCGGCGAATCT 59.503 61.111 12.98 4.64 0.00 2.40
959 2290 2.685387 ATCGAGGAGTGCGGCGAATC 62.685 60.000 12.98 4.25 36.28 2.52
960 2291 2.685387 GATCGAGGAGTGCGGCGAAT 62.685 60.000 12.98 0.00 36.28 3.34
961 2292 3.411418 GATCGAGGAGTGCGGCGAA 62.411 63.158 12.98 0.00 36.28 4.70
962 2293 3.889044 GATCGAGGAGTGCGGCGA 61.889 66.667 12.98 5.29 37.17 5.54
963 2294 3.699955 TTGATCGAGGAGTGCGGCG 62.700 63.158 0.51 0.51 0.00 6.46
964 2295 2.167861 GTTGATCGAGGAGTGCGGC 61.168 63.158 0.00 0.00 0.00 6.53
965 2296 1.078759 GTGTTGATCGAGGAGTGCGG 61.079 60.000 0.00 0.00 0.00 5.69
966 2297 0.388520 TGTGTTGATCGAGGAGTGCG 60.389 55.000 0.00 0.00 0.00 5.34
967 2298 1.071605 GTGTGTTGATCGAGGAGTGC 58.928 55.000 0.00 0.00 0.00 4.40
968 2299 2.438868 TGTGTGTTGATCGAGGAGTG 57.561 50.000 0.00 0.00 0.00 3.51
969 2300 2.102420 TGTTGTGTGTTGATCGAGGAGT 59.898 45.455 0.00 0.00 0.00 3.85
970 2301 2.476619 GTGTTGTGTGTTGATCGAGGAG 59.523 50.000 0.00 0.00 0.00 3.69
971 2302 2.159028 TGTGTTGTGTGTTGATCGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
995 2329 1.668419 GGGAGCTGAACGCATATTGT 58.332 50.000 0.00 0.00 42.61 2.71
1073 2410 2.033757 CCTGCTGTGCTCTGGCTT 59.966 61.111 6.06 0.00 39.59 4.35
1089 2426 3.274288 AGATTTCTGCTCACCGATTTCC 58.726 45.455 0.00 0.00 0.00 3.13
1289 2670 2.125106 GTCGATGGGGGACTGCAC 60.125 66.667 0.00 0.00 0.00 4.57
1297 2678 1.395826 GGTCAGAGAGGTCGATGGGG 61.396 65.000 0.00 0.00 0.00 4.96
1352 2733 2.683933 AGGGCGGTAGGAGTGGTG 60.684 66.667 0.00 0.00 0.00 4.17
1621 3002 1.544691 TGGAGTTGGAGAGAAGTACGC 59.455 52.381 0.00 0.00 0.00 4.42
1668 3122 4.394920 GCAACGGATTAGTTCAAATCTGGA 59.605 41.667 9.53 0.00 43.62 3.86
1671 3126 5.677091 GCATGCAACGGATTAGTTCAAATCT 60.677 40.000 14.21 0.00 36.34 2.40
1694 3153 0.250381 AGGCTCTAGCTGCATCATGC 60.250 55.000 1.35 1.35 40.03 4.06
1698 3157 1.691434 AGGTAAGGCTCTAGCTGCATC 59.309 52.381 1.02 0.00 41.70 3.91
1839 3298 1.685765 CCAGATGACCCCCTCGTCA 60.686 63.158 0.00 0.00 46.36 4.35
1874 3333 0.524862 ACAACGTAGCGAGGTAGGTG 59.475 55.000 8.16 5.98 0.00 4.00
1923 3382 7.391786 CGTATGTCAGTAAGTTTAGCATTCAC 58.608 38.462 0.00 0.00 0.00 3.18
2113 3856 7.010738 ACAAATATATGCACATTGCTTTCTTGC 59.989 33.333 0.00 0.00 45.31 4.01
2125 3868 9.404348 CAGTACAAACAAACAAATATATGCACA 57.596 29.630 0.00 0.00 0.00 4.57
2204 3952 5.372343 TGAGGGCAGAAAAAGCTGATATA 57.628 39.130 0.00 0.00 38.14 0.86
2447 4215 1.241315 TGTGCCAGAGTCACGATCGA 61.241 55.000 24.34 0.00 37.26 3.59
2462 4230 3.514645 CAACAAATATCCCTGCTTGTGC 58.485 45.455 0.00 0.00 40.20 4.57
2510 4279 7.962934 TTTGTTTGTGACTTCGACTTTATTG 57.037 32.000 0.00 0.00 0.00 1.90
2529 4298 3.737559 TGCTCCTGTATCCCATTTGTT 57.262 42.857 0.00 0.00 0.00 2.83
2532 4301 3.073650 GGAGATGCTCCTGTATCCCATTT 59.926 47.826 6.23 0.00 46.41 2.32
2533 4302 2.641815 GGAGATGCTCCTGTATCCCATT 59.358 50.000 6.23 0.00 46.41 3.16
2534 4303 2.264455 GGAGATGCTCCTGTATCCCAT 58.736 52.381 6.23 0.00 46.41 4.00
2546 4687 1.840635 GAACAACCTAGGGGAGATGCT 59.159 52.381 14.81 0.00 36.25 3.79
2551 4692 6.612049 AGAACTATAAGAACAACCTAGGGGAG 59.388 42.308 14.81 4.73 36.25 4.30
2555 4696 7.098074 ACGAGAACTATAAGAACAACCTAGG 57.902 40.000 7.41 7.41 0.00 3.02
2556 4697 9.107177 TCTACGAGAACTATAAGAACAACCTAG 57.893 37.037 0.00 0.00 0.00 3.02
2557 4698 9.107177 CTCTACGAGAACTATAAGAACAACCTA 57.893 37.037 0.00 0.00 0.00 3.08
2559 4700 6.692249 GCTCTACGAGAACTATAAGAACAACC 59.308 42.308 0.00 0.00 0.00 3.77
2563 4704 7.867752 AGATGCTCTACGAGAACTATAAGAAC 58.132 38.462 0.00 0.00 0.00 3.01
2570 4711 3.478509 GGGAGATGCTCTACGAGAACTA 58.521 50.000 0.00 0.00 0.00 2.24
2572 4713 1.338655 GGGGAGATGCTCTACGAGAAC 59.661 57.143 0.00 0.00 0.00 3.01
2574 4715 0.847373 AGGGGAGATGCTCTACGAGA 59.153 55.000 0.00 0.00 0.00 4.04
2575 4716 2.432444 CTAGGGGAGATGCTCTACGAG 58.568 57.143 0.00 0.00 0.00 4.18
2576 4717 1.074084 CCTAGGGGAGATGCTCTACGA 59.926 57.143 0.00 0.00 33.58 3.43
2577 4718 1.540267 CCTAGGGGAGATGCTCTACG 58.460 60.000 0.00 0.00 33.58 3.51
2578 4719 1.203125 AGCCTAGGGGAGATGCTCTAC 60.203 57.143 11.72 0.00 33.58 2.59
2631 4909 0.507358 GAAAAGTGAGCACGACGTCC 59.493 55.000 10.58 0.00 36.20 4.79
2701 4979 7.102076 GGTATAACCATGTGAACCTCCAGGT 62.102 48.000 0.00 0.00 44.29 4.00
2734 5012 1.901464 TTTTGTTGGCGCCCTCTCC 60.901 57.895 26.77 7.49 0.00 3.71
2735 5013 1.172812 AGTTTTGTTGGCGCCCTCTC 61.173 55.000 26.77 12.01 0.00 3.20
2767 5045 0.727398 GTGCTTACCAACTCCGCATC 59.273 55.000 0.00 0.00 32.75 3.91
2800 5078 4.352893 CCCTTGGGTTGGTCTCATTTTAT 58.647 43.478 0.00 0.00 0.00 1.40
2801 5079 3.773560 CCCTTGGGTTGGTCTCATTTTA 58.226 45.455 0.00 0.00 0.00 1.52
2822 5458 0.605589 AAGTGCCAACGAGGGTTAGC 60.606 55.000 0.00 0.00 40.57 3.09
2880 5516 3.060615 ACCCGAGTTCGAGTCCGG 61.061 66.667 12.55 12.55 43.02 5.14
2900 5537 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
2953 5590 3.284449 GACGCGTTGGGGTTGCTT 61.284 61.111 15.53 0.00 39.74 3.91
3010 5753 1.174712 GGCATGAACTATGGGCGCAT 61.175 55.000 20.92 20.92 37.26 4.73
3015 5758 1.168407 CCGCTGGCATGAACTATGGG 61.168 60.000 0.00 0.00 37.26 4.00
3029 5772 3.323136 GCGACGACATAGCCGCTG 61.323 66.667 2.16 0.00 43.75 5.18
3099 5842 4.394920 CCAGCCGAACTGTGTGTTATTATT 59.605 41.667 4.95 0.00 45.68 1.40
3101 5844 3.331150 CCAGCCGAACTGTGTGTTATTA 58.669 45.455 4.95 0.00 45.68 0.98
3106 5849 2.591715 GCCAGCCGAACTGTGTGT 60.592 61.111 4.95 0.00 45.68 3.72
3166 5909 2.346365 GTGGTCGAACTCCCACCC 59.654 66.667 10.99 0.00 44.37 4.61
3169 5912 3.998672 GGCGTGGTCGAACTCCCA 61.999 66.667 0.33 0.00 39.71 4.37
3171 5914 1.810030 GATGGCGTGGTCGAACTCC 60.810 63.158 0.33 0.69 39.71 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.