Multiple sequence alignment - TraesCS7D01G522600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G522600 chr7D 100.000 3648 0 0 1 3648 619229875 619233522 0.000000e+00 6737.0
1 TraesCS7D01G522600 chr7D 91.098 2314 113 45 587 2839 619199855 619202136 0.000000e+00 3046.0
2 TraesCS7D01G522600 chr7A 93.527 2271 90 24 583 2839 713648945 713651172 0.000000e+00 3326.0
3 TraesCS7D01G522600 chr7A 92.576 2290 115 24 560 2840 713264277 713266520 0.000000e+00 3236.0
4 TraesCS7D01G522600 chr7A 92.669 2278 103 25 583 2840 713403618 713405851 0.000000e+00 3223.0
5 TraesCS7D01G522600 chr7A 92.625 2278 105 25 583 2840 713332209 713334443 0.000000e+00 3217.0
6 TraesCS7D01G522600 chr7A 92.433 2273 108 29 583 2840 713468247 713470470 0.000000e+00 3186.0
7 TraesCS7D01G522600 chr7A 93.425 1460 65 17 1383 2839 713614746 713616177 0.000000e+00 2135.0
8 TraesCS7D01G522600 chr7A 92.235 1481 77 18 1369 2840 713554744 713556195 0.000000e+00 2063.0
9 TraesCS7D01G522600 chr7A 92.623 366 11 6 583 937 713526008 713526368 2.510000e-141 512.0
10 TraesCS7D01G522600 chr7A 88.325 394 29 3 95 478 713331745 713332131 1.190000e-124 457.0
11 TraesCS7D01G522600 chr7A 88.131 396 28 3 95 478 713403152 713403540 1.540000e-123 453.0
12 TraesCS7D01G522600 chr7A 88.071 394 30 3 95 478 713467783 713468169 5.550000e-123 451.0
13 TraesCS7D01G522600 chr7A 88.205 390 31 5 95 478 713648487 713648867 5.550000e-123 451.0
14 TraesCS7D01G522600 chr7A 87.626 396 30 3 95 478 713525542 713525930 3.340000e-120 442.0
15 TraesCS7D01G522600 chr7A 89.163 203 19 2 258 460 713263748 713263947 2.170000e-62 250.0
16 TraesCS7D01G522600 chr7A 88.542 96 10 1 1 96 661077976 661077882 8.280000e-22 115.0
17 TraesCS7D01G522600 chr7A 83.158 95 12 4 1 95 662663244 662663154 2.330000e-12 84.2
18 TraesCS7D01G522600 chr7B 91.351 2139 116 39 713 2841 714739299 714741378 0.000000e+00 2861.0
19 TraesCS7D01G522600 chr7B 95.270 1628 62 10 1215 2839 714759008 714760623 0.000000e+00 2566.0
20 TraesCS7D01G522600 chr7B 85.890 489 38 16 713 1180 714758531 714759009 3.270000e-135 492.0
21 TraesCS7D01G522600 chr7B 90.000 310 31 0 2978 3287 714741666 714741975 5.670000e-108 401.0
22 TraesCS7D01G522600 chr7B 89.908 109 7 3 3333 3439 714741989 714742095 1.770000e-28 137.0
23 TraesCS7D01G522600 chr5A 85.398 226 29 4 96 319 428152108 428152331 7.880000e-57 231.0
24 TraesCS7D01G522600 chr1B 82.969 229 37 2 96 322 653937060 653936832 4.770000e-49 206.0
25 TraesCS7D01G522600 chr4D 83.408 223 32 4 99 319 91074331 91074550 6.180000e-48 202.0
26 TraesCS7D01G522600 chr4D 89.247 93 9 1 1 93 98534683 98534774 8.280000e-22 115.0
27 TraesCS7D01G522600 chrUn 80.827 266 39 6 1177 1433 93249447 93249185 7.990000e-47 198.0
28 TraesCS7D01G522600 chr3B 82.432 222 37 2 96 316 430528676 430528896 3.720000e-45 193.0
29 TraesCS7D01G522600 chr3D 93.878 98 6 0 1 98 223467032 223466935 8.160000e-32 148.0
30 TraesCS7D01G522600 chr5B 90.816 98 7 2 1 98 2044028 2043933 2.960000e-26 130.0
31 TraesCS7D01G522600 chr3A 88.776 98 10 1 1 98 735722252 735722156 6.400000e-23 119.0
32 TraesCS7D01G522600 chr5D 87.755 98 10 1 1 96 8391334 8391237 2.980000e-21 113.0
33 TraesCS7D01G522600 chr2A 87.368 95 11 1 1 95 760340700 760340793 1.390000e-19 108.0
34 TraesCS7D01G522600 chr6D 85.714 98 8 6 1 96 28760122 28760215 8.340000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G522600 chr7D 619229875 619233522 3647 False 6737.0 6737 100.000000 1 3648 1 chr7D.!!$F2 3647
1 TraesCS7D01G522600 chr7D 619199855 619202136 2281 False 3046.0 3046 91.098000 587 2839 1 chr7D.!!$F1 2252
2 TraesCS7D01G522600 chr7A 713614746 713616177 1431 False 2135.0 2135 93.425000 1383 2839 1 chr7A.!!$F2 1456
3 TraesCS7D01G522600 chr7A 713554744 713556195 1451 False 2063.0 2063 92.235000 1369 2840 1 chr7A.!!$F1 1471
4 TraesCS7D01G522600 chr7A 713648487 713651172 2685 False 1888.5 3326 90.866000 95 2839 2 chr7A.!!$F8 2744
5 TraesCS7D01G522600 chr7A 713403152 713405851 2699 False 1838.0 3223 90.400000 95 2840 2 chr7A.!!$F5 2745
6 TraesCS7D01G522600 chr7A 713331745 713334443 2698 False 1837.0 3217 90.475000 95 2840 2 chr7A.!!$F4 2745
7 TraesCS7D01G522600 chr7A 713467783 713470470 2687 False 1818.5 3186 90.252000 95 2840 2 chr7A.!!$F6 2745
8 TraesCS7D01G522600 chr7A 713263748 713266520 2772 False 1743.0 3236 90.869500 258 2840 2 chr7A.!!$F3 2582
9 TraesCS7D01G522600 chr7A 713525542 713526368 826 False 477.0 512 90.124500 95 937 2 chr7A.!!$F7 842
10 TraesCS7D01G522600 chr7B 714758531 714760623 2092 False 1529.0 2566 90.580000 713 2839 2 chr7B.!!$F2 2126
11 TraesCS7D01G522600 chr7B 714739299 714742095 2796 False 1133.0 2861 90.419667 713 3439 3 chr7B.!!$F1 2726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 480 0.038067 AGTGTGTGTACCGCGCAATA 60.038 50.0 8.75 0.0 39.56 1.90 F
1820 2181 0.461548 CGAGGCTACTCAATGCTGGA 59.538 55.0 0.00 0.0 44.17 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 2829 0.617820 AGTACCCAAGCTCGGTGGAT 60.618 55.0 14.30 0.0 38.54 3.41 R
3189 3713 0.035881 TGCAGAGAGCCAAGTGGAAG 59.964 55.0 0.18 0.0 44.83 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.795098 TGTTTCGCACACATAATTCTTACT 57.205 33.333 0.00 0.00 0.00 2.24
37 38 7.892778 TGTTTCGCACACATAATTCTTACTA 57.107 32.000 0.00 0.00 0.00 1.82
38 39 8.312896 TGTTTCGCACACATAATTCTTACTAA 57.687 30.769 0.00 0.00 0.00 2.24
39 40 8.775527 TGTTTCGCACACATAATTCTTACTAAA 58.224 29.630 0.00 0.00 0.00 1.85
40 41 9.769093 GTTTCGCACACATAATTCTTACTAAAT 57.231 29.630 0.00 0.00 0.00 1.40
41 42 9.767684 TTTCGCACACATAATTCTTACTAAATG 57.232 29.630 0.00 0.00 0.00 2.32
42 43 8.487313 TCGCACACATAATTCTTACTAAATGT 57.513 30.769 0.00 0.00 0.00 2.71
43 44 9.589111 TCGCACACATAATTCTTACTAAATGTA 57.411 29.630 0.00 0.00 0.00 2.29
66 67 9.826574 TGTAAATACACATTAACTATGTCTCCC 57.173 33.333 0.00 0.00 45.71 4.30
67 68 8.975439 GTAAATACACATTAACTATGTCTCCCG 58.025 37.037 0.00 0.00 45.71 5.14
68 69 6.726490 ATACACATTAACTATGTCTCCCGT 57.274 37.500 0.00 0.00 45.71 5.28
69 70 5.416271 ACACATTAACTATGTCTCCCGTT 57.584 39.130 0.00 0.00 45.71 4.44
70 71 5.175859 ACACATTAACTATGTCTCCCGTTG 58.824 41.667 0.00 0.00 45.71 4.10
71 72 4.034048 CACATTAACTATGTCTCCCGTTGC 59.966 45.833 0.00 0.00 45.71 4.17
72 73 3.965379 TTAACTATGTCTCCCGTTGCA 57.035 42.857 0.00 0.00 0.00 4.08
73 74 2.851263 AACTATGTCTCCCGTTGCAA 57.149 45.000 0.00 0.00 0.00 4.08
74 75 2.094762 ACTATGTCTCCCGTTGCAAC 57.905 50.000 19.89 19.89 0.00 4.17
84 85 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
85 86 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
86 87 3.144120 TTGCAACGCACGGGCATTT 62.144 52.632 11.77 0.00 38.71 2.32
87 88 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
88 89 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
89 90 2.015627 CAACGCACGGGCATTTGTG 61.016 57.895 11.77 0.00 41.24 3.33
156 169 5.411361 TGTACATGTGTGTAGATTTTCAGGC 59.589 40.000 9.11 0.00 41.29 4.85
157 170 4.655963 ACATGTGTGTAGATTTTCAGGCT 58.344 39.130 0.00 0.00 36.63 4.58
158 171 4.456911 ACATGTGTGTAGATTTTCAGGCTG 59.543 41.667 8.58 8.58 36.63 4.85
173 186 5.195001 TCAGGCTGAAAAACGCTAAAATT 57.805 34.783 16.28 0.00 0.00 1.82
182 195 8.090250 TGAAAAACGCTAAAATTAGAGCTACA 57.910 30.769 4.39 0.00 36.50 2.74
223 236 7.217200 TGGAGCCTTTTATCATGTGTACTATC 58.783 38.462 0.00 0.00 0.00 2.08
255 268 9.097257 TGAAAGTCCATGATTTTGTTTCTTTTC 57.903 29.630 0.00 0.00 0.00 2.29
261 274 7.498239 TCCATGATTTTGTTTCTTTTCATGCAA 59.502 29.630 0.00 0.00 39.24 4.08
340 353 9.408648 CCTTGAATTTTAAGGTATCCATGTAGT 57.591 33.333 10.96 0.00 39.85 2.73
343 356 9.967451 TGAATTTTAAGGTATCCATGTAGTTCA 57.033 29.630 0.00 0.00 0.00 3.18
352 365 4.808414 TCCATGTAGTTCAGACTCCAAG 57.192 45.455 0.00 0.00 37.33 3.61
398 411 5.121142 GCAAAATGCATGCACTATGTTCTTT 59.879 36.000 25.37 14.00 44.26 2.52
460 473 2.161012 ACGTATCTGAGTGTGTGTACCG 59.839 50.000 0.00 0.00 0.00 4.02
467 480 0.038067 AGTGTGTGTACCGCGCAATA 60.038 50.000 8.75 0.00 39.56 1.90
478 491 2.159572 ACCGCGCAATAACTGTTGATTC 60.160 45.455 8.75 0.00 0.00 2.52
480 493 3.345714 CGCGCAATAACTGTTGATTCTC 58.654 45.455 8.75 0.00 0.00 2.87
482 495 4.436050 CGCGCAATAACTGTTGATTCTCTT 60.436 41.667 8.75 0.00 0.00 2.85
484 497 6.542852 GCGCAATAACTGTTGATTCTCTTAA 58.457 36.000 0.30 0.00 0.00 1.85
485 498 7.021196 GCGCAATAACTGTTGATTCTCTTAAA 58.979 34.615 0.30 0.00 0.00 1.52
488 501 9.899226 GCAATAACTGTTGATTCTCTTAAAAGT 57.101 29.630 2.69 0.00 0.00 2.66
515 804 3.369381 CCACGCATGGTAAGGAGAG 57.631 57.895 0.00 0.00 41.64 3.20
533 822 3.652055 AGAGCTCTCTCTCTCTCTCTCT 58.348 50.000 11.45 0.00 46.32 3.10
534 823 3.640967 AGAGCTCTCTCTCTCTCTCTCTC 59.359 52.174 11.45 0.00 46.32 3.20
535 824 3.640967 GAGCTCTCTCTCTCTCTCTCTCT 59.359 52.174 6.43 0.00 36.42 3.10
536 825 3.640967 AGCTCTCTCTCTCTCTCTCTCTC 59.359 52.174 0.00 0.00 0.00 3.20
537 826 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
538 827 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
539 828 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
540 829 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
541 830 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
542 831 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
543 832 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
544 833 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
545 834 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
546 835 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
547 836 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
548 837 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
549 838 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
550 839 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
551 840 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
552 841 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
553 842 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
554 843 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
555 844 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
556 845 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
557 846 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
558 847 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
559 848 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
560 849 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
561 850 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
562 851 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
563 852 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
564 853 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
565 854 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
566 855 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
567 856 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
568 857 4.646945 TCTCTCTCTCTCTCTCTCTCTGTC 59.353 50.000 0.00 0.00 0.00 3.51
569 858 4.614475 TCTCTCTCTCTCTCTCTCTGTCT 58.386 47.826 0.00 0.00 0.00 3.41
570 859 4.646945 TCTCTCTCTCTCTCTCTCTGTCTC 59.353 50.000 0.00 0.00 0.00 3.36
571 860 4.614475 TCTCTCTCTCTCTCTCTGTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
572 861 4.646945 TCTCTCTCTCTCTCTCTGTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
573 862 3.706594 TCTCTCTCTCTCTCTGTCTCTCC 59.293 52.174 0.00 0.00 0.00 3.71
574 863 3.708631 CTCTCTCTCTCTCTGTCTCTCCT 59.291 52.174 0.00 0.00 0.00 3.69
575 864 4.104086 TCTCTCTCTCTCTGTCTCTCCTT 58.896 47.826 0.00 0.00 0.00 3.36
576 865 5.277250 TCTCTCTCTCTCTGTCTCTCCTTA 58.723 45.833 0.00 0.00 0.00 2.69
577 866 5.905331 TCTCTCTCTCTCTGTCTCTCCTTAT 59.095 44.000 0.00 0.00 0.00 1.73
578 867 5.928976 TCTCTCTCTCTGTCTCTCCTTATG 58.071 45.833 0.00 0.00 0.00 1.90
579 868 5.428457 TCTCTCTCTCTGTCTCTCCTTATGT 59.572 44.000 0.00 0.00 0.00 2.29
580 869 6.069673 TCTCTCTCTCTGTCTCTCCTTATGTT 60.070 42.308 0.00 0.00 0.00 2.71
581 870 5.885352 TCTCTCTCTGTCTCTCCTTATGTTG 59.115 44.000 0.00 0.00 0.00 3.33
780 1103 5.320488 TCTTCTATCTATCGGTCTCCCAA 57.680 43.478 0.00 0.00 0.00 4.12
781 1104 5.317808 TCTTCTATCTATCGGTCTCCCAAG 58.682 45.833 0.00 0.00 0.00 3.61
880 1203 1.171308 ATGCTGACTCCATGTGCAAC 58.829 50.000 0.00 0.00 37.20 4.17
1107 1461 7.201821 GCCTTGCTTTAGCTTTTAGATATTCCA 60.202 37.037 0.00 0.00 42.66 3.53
1112 1466 8.355913 GCTTTAGCTTTTAGATATTCCATGCTT 58.644 33.333 0.00 0.00 38.21 3.91
1115 1469 5.595542 AGCTTTTAGATATTCCATGCTTGCA 59.404 36.000 0.00 0.00 0.00 4.08
1175 1531 3.277142 TCTTCATGCATGCACTGAGAT 57.723 42.857 25.37 2.19 0.00 2.75
1196 1552 6.385843 AGATATGATTGATCTACGTGACAGC 58.614 40.000 0.00 0.00 31.72 4.40
1200 1556 1.939785 GATCTACGTGACAGCGGCG 60.940 63.158 0.51 0.51 35.98 6.46
1502 1860 9.167311 AGATAGAGAATTTATTTTTGAGCACGT 57.833 29.630 0.00 0.00 0.00 4.49
1503 1861 9.214953 GATAGAGAATTTATTTTTGAGCACGTG 57.785 33.333 12.28 12.28 0.00 4.49
1584 1943 9.768662 GATAATTTAGTTCCGACCCTTACAATA 57.231 33.333 0.00 0.00 0.00 1.90
1820 2181 0.461548 CGAGGCTACTCAATGCTGGA 59.538 55.000 0.00 0.00 44.17 3.86
1947 2308 7.467539 GCTTCGATGATGTGAGTAGTAGTTAGT 60.468 40.741 1.89 0.00 0.00 2.24
2051 2413 9.658799 CAGATCGATAGTTATATTGGGAATGTT 57.341 33.333 0.00 0.00 37.40 2.71
2057 2419 9.701098 GATAGTTATATTGGGAATGTTACGACA 57.299 33.333 0.00 0.00 40.71 4.35
2066 2428 3.932710 GGAATGTTACGACAGAGATTGCA 59.067 43.478 0.00 0.00 39.58 4.08
2192 2554 1.033746 CATGCGACCTTCTGGCCAAT 61.034 55.000 7.01 0.00 36.63 3.16
2358 2726 6.873076 TGATGCAAATTAAATCTGGTTTCACC 59.127 34.615 0.00 0.00 39.22 4.02
2417 2785 2.283529 GCAGGTGAAGGGTCGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
2418 2786 1.893786 CAGGTGAAGGGTCGGAGAG 59.106 63.158 0.00 0.00 36.95 3.20
2461 2829 4.254709 ACACCTTGCTGCGAGGCA 62.255 61.111 31.39 0.57 38.56 4.75
2473 2841 2.586792 GAGGCATCCACCGAGCTT 59.413 61.111 0.00 0.00 33.69 3.74
2488 2856 1.071699 GAGCTTGGGTACTGTGGACAA 59.928 52.381 0.00 0.00 0.00 3.18
2542 2910 5.649395 CCTATGCAAGAATCCTGACAAGAAA 59.351 40.000 0.00 0.00 0.00 2.52
2678 3046 7.047460 TGTAGTTTAGGTTTAGATCGATCCC 57.953 40.000 21.66 15.11 0.00 3.85
2688 3056 5.607939 TTAGATCGATCCCTTGCTTGTTA 57.392 39.130 21.66 0.87 0.00 2.41
2690 3058 3.706594 AGATCGATCCCTTGCTTGTTAGA 59.293 43.478 21.66 0.00 0.00 2.10
2706 3074 6.254373 GCTTGTTAGAGCATTATCTTTTTGCC 59.746 38.462 0.00 0.00 42.25 4.52
2841 3212 7.226128 TCGTACTATATATGGTGAATCTAGCGG 59.774 40.741 11.70 0.00 0.00 5.52
2843 3214 6.432581 ACTATATATGGTGAATCTAGCGGGA 58.567 40.000 0.20 0.00 0.00 5.14
2844 3215 7.069986 ACTATATATGGTGAATCTAGCGGGAT 58.930 38.462 0.20 0.00 0.00 3.85
2845 3216 8.225416 ACTATATATGGTGAATCTAGCGGGATA 58.775 37.037 0.20 0.00 0.00 2.59
2848 3278 4.271696 TGGTGAATCTAGCGGGATAATG 57.728 45.455 0.00 0.00 0.00 1.90
2855 3285 2.632996 TCTAGCGGGATAATGGGTTCTG 59.367 50.000 0.00 0.00 0.00 3.02
2859 3289 3.201266 AGCGGGATAATGGGTTCTGTTTA 59.799 43.478 0.00 0.00 0.00 2.01
2860 3290 3.949113 GCGGGATAATGGGTTCTGTTTAA 59.051 43.478 0.00 0.00 0.00 1.52
2871 3301 7.739498 TGGGTTCTGTTTAAGTCAAGATTAC 57.261 36.000 0.00 0.00 0.00 1.89
2898 3328 0.652071 TAGCTTTGCATGTGCGATCG 59.348 50.000 11.69 11.69 45.83 3.69
2918 3348 1.527311 GTTGGTCTCAAAGACTGCGTC 59.473 52.381 7.02 1.15 44.46 5.19
2936 3366 4.097437 TGCGTCTTAGTCGATTGAGGTAAT 59.903 41.667 2.72 0.00 0.00 1.89
2968 3398 1.291588 CACCTCGTGCTGCTCTTCT 59.708 57.895 0.00 0.00 0.00 2.85
2969 3399 0.320247 CACCTCGTGCTGCTCTTCTT 60.320 55.000 0.00 0.00 0.00 2.52
2971 3401 1.074752 CCTCGTGCTGCTCTTCTTTC 58.925 55.000 0.00 0.00 0.00 2.62
2972 3402 1.606480 CCTCGTGCTGCTCTTCTTTCA 60.606 52.381 0.00 0.00 0.00 2.69
2974 3404 0.795085 CGTGCTGCTCTTCTTTCAGG 59.205 55.000 0.00 0.00 0.00 3.86
3000 3524 0.655733 ACGTGGCAAAGACGACAAAG 59.344 50.000 2.05 0.00 39.21 2.77
3009 3533 0.874607 AGACGACAAAGACGCACACC 60.875 55.000 0.00 0.00 0.00 4.16
3017 3541 4.961511 GACGCACACCGGCACTCA 62.962 66.667 0.00 0.00 46.81 3.41
3021 3545 2.972505 CACACCGGCACTCACACC 60.973 66.667 0.00 0.00 0.00 4.16
3026 3550 4.704833 CGGCACTCACACCCCAGG 62.705 72.222 0.00 0.00 0.00 4.45
3048 3572 4.436998 CGTCCGGCTTTCTCGGCT 62.437 66.667 0.00 0.00 46.43 5.52
3056 3580 1.735018 GGCTTTCTCGGCTCTTCTTTC 59.265 52.381 0.00 0.00 0.00 2.62
3058 3582 3.006247 GCTTTCTCGGCTCTTCTTTCAT 58.994 45.455 0.00 0.00 0.00 2.57
3069 3593 5.221126 GGCTCTTCTTTCATGTGTTTGTTCT 60.221 40.000 0.00 0.00 0.00 3.01
3076 3600 4.898829 TCATGTGTTTGTTCTGGTTCTG 57.101 40.909 0.00 0.00 0.00 3.02
3078 3602 1.748493 TGTGTTTGTTCTGGTTCTGCC 59.252 47.619 0.00 0.00 37.90 4.85
3090 3614 2.290260 TGGTTCTGCCTTCACCATGTAG 60.290 50.000 0.00 0.00 35.57 2.74
3094 3618 4.986467 CCTTCACCATGTAGGCCC 57.014 61.111 0.00 0.00 43.14 5.80
3126 3650 2.229543 AGGCTGTGTTTATGTCGTCGTA 59.770 45.455 0.00 0.00 0.00 3.43
3134 3658 4.157472 TGTTTATGTCGTCGTACCCATACA 59.843 41.667 0.00 0.00 0.00 2.29
3142 3666 3.181494 CGTCGTACCCATACATCTTGTCA 60.181 47.826 0.00 0.00 0.00 3.58
3143 3667 4.360563 GTCGTACCCATACATCTTGTCAG 58.639 47.826 0.00 0.00 0.00 3.51
3154 3678 2.724977 TCTTGTCAGAACAGTAGCCG 57.275 50.000 0.00 0.00 36.57 5.52
3167 3691 4.581868 ACAGTAGCCGGTAATTAAAAGCA 58.418 39.130 1.90 0.00 0.00 3.91
3171 3695 2.160813 AGCCGGTAATTAAAAGCACACG 59.839 45.455 1.90 0.00 0.00 4.49
3175 3699 3.058085 CGGTAATTAAAAGCACACGGGTT 60.058 43.478 0.00 0.00 39.32 4.11
3189 3713 1.507141 CGGGTTGTGCCTGTGAGAAC 61.507 60.000 0.00 0.00 38.84 3.01
3190 3714 0.179018 GGGTTGTGCCTGTGAGAACT 60.179 55.000 0.00 0.00 37.43 3.01
3208 3732 0.035881 CTTCCACTTGGCTCTCTGCA 59.964 55.000 0.00 0.00 45.15 4.41
3214 3738 0.250640 CTTGGCTCTCTGCAGGTGTT 60.251 55.000 15.13 0.00 45.15 3.32
3257 3781 6.429385 GGTATTTGTTTCAATTCCAATGGCAA 59.571 34.615 0.00 0.00 0.00 4.52
3260 3784 3.181457 TGTTTCAATTCCAATGGCAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
3283 3807 4.283467 ACATGTCTGTAACAAGCTAGGTCA 59.717 41.667 0.00 0.00 42.37 4.02
3287 3811 7.891498 TGTCTGTAACAAGCTAGGTCATATA 57.109 36.000 0.00 0.00 34.03 0.86
3289 3813 7.340999 TGTCTGTAACAAGCTAGGTCATATACA 59.659 37.037 0.00 2.75 34.03 2.29
3290 3814 7.648510 GTCTGTAACAAGCTAGGTCATATACAC 59.351 40.741 0.00 0.00 0.00 2.90
3291 3815 7.340999 TCTGTAACAAGCTAGGTCATATACACA 59.659 37.037 0.00 0.00 0.00 3.72
3292 3816 8.018537 TGTAACAAGCTAGGTCATATACACAT 57.981 34.615 0.00 0.00 0.00 3.21
3293 3817 9.138596 TGTAACAAGCTAGGTCATATACACATA 57.861 33.333 0.00 0.00 0.00 2.29
3313 3837 7.801547 ACATATTTTGTGAATCTTTTGAGCG 57.198 32.000 0.00 0.00 37.11 5.03
3314 3838 7.370383 ACATATTTTGTGAATCTTTTGAGCGT 58.630 30.769 0.00 0.00 37.11 5.07
3315 3839 7.326789 ACATATTTTGTGAATCTTTTGAGCGTG 59.673 33.333 0.00 0.00 37.11 5.34
3316 3840 4.630894 TTTGTGAATCTTTTGAGCGTGT 57.369 36.364 0.00 0.00 0.00 4.49
3317 3841 5.743026 TTTGTGAATCTTTTGAGCGTGTA 57.257 34.783 0.00 0.00 0.00 2.90
3318 3842 4.990543 TGTGAATCTTTTGAGCGTGTAG 57.009 40.909 0.00 0.00 0.00 2.74
3328 3852 4.751539 GCGTGTAGCTGCAATGTG 57.248 55.556 5.91 0.00 44.04 3.21
3329 3853 1.868997 GCGTGTAGCTGCAATGTGT 59.131 52.632 5.91 0.00 44.04 3.72
3330 3854 0.453282 GCGTGTAGCTGCAATGTGTG 60.453 55.000 5.91 0.00 44.04 3.82
3331 3855 0.166597 CGTGTAGCTGCAATGTGTGG 59.833 55.000 5.91 0.00 0.00 4.17
3372 3896 6.092122 GCTTGGTTTCTTTTACTTTGCTGTTT 59.908 34.615 0.00 0.00 0.00 2.83
3374 3898 6.692486 TGGTTTCTTTTACTTTGCTGTTTCA 58.308 32.000 0.00 0.00 0.00 2.69
3395 3919 8.968242 GTTTCAAGTATTTGGAAGCAAGTTAAG 58.032 33.333 0.00 0.00 32.45 1.85
3398 3922 5.887754 AGTATTTGGAAGCAAGTTAAGGGA 58.112 37.500 0.00 0.00 0.00 4.20
3404 3928 4.257731 GGAAGCAAGTTAAGGGAAGAGAG 58.742 47.826 0.00 0.00 0.00 3.20
3406 3930 5.513267 GGAAGCAAGTTAAGGGAAGAGAGAA 60.513 44.000 0.00 0.00 0.00 2.87
3407 3931 5.770685 AGCAAGTTAAGGGAAGAGAGAAT 57.229 39.130 0.00 0.00 0.00 2.40
3410 3934 5.707764 GCAAGTTAAGGGAAGAGAGAATTGT 59.292 40.000 0.00 0.00 0.00 2.71
3413 3937 8.633561 CAAGTTAAGGGAAGAGAGAATTGTTTT 58.366 33.333 0.00 0.00 0.00 2.43
3421 3945 6.265422 GGAAGAGAGAATTGTTTTCTGGGAAA 59.735 38.462 0.00 0.00 0.00 3.13
3439 3963 7.124147 TCTGGGAAAAAGGAAATATTGATCACC 59.876 37.037 0.00 0.00 0.00 4.02
3440 3964 6.127479 TGGGAAAAAGGAAATATTGATCACCG 60.127 38.462 0.00 0.00 0.00 4.94
3441 3965 6.273071 GGAAAAAGGAAATATTGATCACCGG 58.727 40.000 0.00 0.00 0.00 5.28
3442 3966 6.096282 GGAAAAAGGAAATATTGATCACCGGA 59.904 38.462 9.46 0.00 0.00 5.14
3443 3967 6.699575 AAAAGGAAATATTGATCACCGGAG 57.300 37.500 9.46 0.00 0.00 4.63
3444 3968 5.630415 AAGGAAATATTGATCACCGGAGA 57.370 39.130 9.46 6.11 0.00 3.71
3445 3969 5.832539 AGGAAATATTGATCACCGGAGAT 57.167 39.130 14.73 14.73 0.00 2.75
3446 3970 6.935240 AGGAAATATTGATCACCGGAGATA 57.065 37.500 14.80 0.23 0.00 1.98
3447 3971 7.502060 AGGAAATATTGATCACCGGAGATAT 57.498 36.000 14.80 8.23 0.00 1.63
3448 3972 7.560368 AGGAAATATTGATCACCGGAGATATC 58.440 38.462 14.80 4.97 0.00 1.63
3449 3973 7.180946 AGGAAATATTGATCACCGGAGATATCA 59.819 37.037 14.80 7.71 0.00 2.15
3450 3974 7.989741 GGAAATATTGATCACCGGAGATATCAT 59.010 37.037 14.80 9.26 0.00 2.45
3451 3975 9.388506 GAAATATTGATCACCGGAGATATCATT 57.611 33.333 14.80 9.23 0.00 2.57
3455 3979 7.962964 TTGATCACCGGAGATATCATTAAAC 57.037 36.000 14.80 0.00 0.00 2.01
3456 3980 6.156519 TGATCACCGGAGATATCATTAAACG 58.843 40.000 14.80 0.28 0.00 3.60
3457 3981 5.777850 TCACCGGAGATATCATTAAACGA 57.222 39.130 9.46 0.00 0.00 3.85
3458 3982 6.151663 TCACCGGAGATATCATTAAACGAA 57.848 37.500 9.46 0.00 0.00 3.85
3459 3983 6.575267 TCACCGGAGATATCATTAAACGAAA 58.425 36.000 9.46 0.00 0.00 3.46
3460 3984 6.700081 TCACCGGAGATATCATTAAACGAAAG 59.300 38.462 9.46 0.00 0.00 2.62
3461 3985 6.700081 CACCGGAGATATCATTAAACGAAAGA 59.300 38.462 9.46 0.00 0.00 2.52
3462 3986 7.385205 CACCGGAGATATCATTAAACGAAAGAT 59.615 37.037 9.46 0.00 0.00 2.40
3463 3987 7.385205 ACCGGAGATATCATTAAACGAAAGATG 59.615 37.037 9.46 0.00 0.00 2.90
3464 3988 7.230222 CGGAGATATCATTAAACGAAAGATGC 58.770 38.462 5.32 0.00 0.00 3.91
3465 3989 7.116948 CGGAGATATCATTAAACGAAAGATGCT 59.883 37.037 5.32 0.00 0.00 3.79
3466 3990 8.226448 GGAGATATCATTAAACGAAAGATGCTG 58.774 37.037 5.32 0.00 0.00 4.41
3467 3991 7.579726 AGATATCATTAAACGAAAGATGCTGC 58.420 34.615 5.32 0.00 0.00 5.25
3468 3992 5.824904 ATCATTAAACGAAAGATGCTGCT 57.175 34.783 0.00 0.00 0.00 4.24
3469 3993 4.973396 TCATTAAACGAAAGATGCTGCTG 58.027 39.130 0.00 0.00 0.00 4.41
3470 3994 2.900122 TAAACGAAAGATGCTGCTGC 57.100 45.000 8.89 8.89 40.20 5.25
3481 4005 2.034104 TGCTGCTGCAGAATTCCTAG 57.966 50.000 32.30 4.57 45.31 3.02
3482 4006 1.556451 TGCTGCTGCAGAATTCCTAGA 59.444 47.619 32.30 1.81 45.31 2.43
3483 4007 2.211806 GCTGCTGCAGAATTCCTAGAG 58.788 52.381 32.30 3.24 39.41 2.43
3484 4008 2.419851 GCTGCTGCAGAATTCCTAGAGT 60.420 50.000 32.30 0.00 39.41 3.24
3485 4009 3.196463 CTGCTGCAGAATTCCTAGAGTG 58.804 50.000 24.88 0.00 32.44 3.51
3486 4010 2.833943 TGCTGCAGAATTCCTAGAGTGA 59.166 45.455 20.43 0.00 0.00 3.41
3487 4011 3.261643 TGCTGCAGAATTCCTAGAGTGAA 59.738 43.478 20.43 0.00 0.00 3.18
3488 4012 3.620821 GCTGCAGAATTCCTAGAGTGAAC 59.379 47.826 20.43 0.00 0.00 3.18
3489 4013 4.187694 CTGCAGAATTCCTAGAGTGAACC 58.812 47.826 8.42 0.00 0.00 3.62
3490 4014 3.582647 TGCAGAATTCCTAGAGTGAACCA 59.417 43.478 0.65 0.00 0.00 3.67
3491 4015 4.041567 TGCAGAATTCCTAGAGTGAACCAA 59.958 41.667 0.65 0.00 0.00 3.67
3492 4016 5.003804 GCAGAATTCCTAGAGTGAACCAAA 58.996 41.667 0.65 0.00 0.00 3.28
3493 4017 5.473504 GCAGAATTCCTAGAGTGAACCAAAA 59.526 40.000 0.65 0.00 0.00 2.44
3494 4018 6.568653 GCAGAATTCCTAGAGTGAACCAAAAC 60.569 42.308 0.65 0.00 0.00 2.43
3495 4019 6.486657 CAGAATTCCTAGAGTGAACCAAAACA 59.513 38.462 0.65 0.00 0.00 2.83
3496 4020 7.013274 CAGAATTCCTAGAGTGAACCAAAACAA 59.987 37.037 0.65 0.00 0.00 2.83
3497 4021 7.559897 AGAATTCCTAGAGTGAACCAAAACAAA 59.440 33.333 0.65 0.00 0.00 2.83
3498 4022 7.654022 ATTCCTAGAGTGAACCAAAACAAAA 57.346 32.000 0.00 0.00 0.00 2.44
3499 4023 7.469537 TTCCTAGAGTGAACCAAAACAAAAA 57.530 32.000 0.00 0.00 0.00 1.94
3500 4024 7.654022 TCCTAGAGTGAACCAAAACAAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
3501 4025 8.754991 TCCTAGAGTGAACCAAAACAAAAATA 57.245 30.769 0.00 0.00 0.00 1.40
3502 4026 9.362151 TCCTAGAGTGAACCAAAACAAAAATAT 57.638 29.630 0.00 0.00 0.00 1.28
3503 4027 9.410556 CCTAGAGTGAACCAAAACAAAAATATG 57.589 33.333 0.00 0.00 0.00 1.78
3506 4030 9.480053 AGAGTGAACCAAAACAAAAATATGATG 57.520 29.630 0.00 0.00 0.00 3.07
3507 4031 8.086851 AGTGAACCAAAACAAAAATATGATGC 57.913 30.769 0.00 0.00 0.00 3.91
3508 4032 7.173047 AGTGAACCAAAACAAAAATATGATGCC 59.827 33.333 0.00 0.00 0.00 4.40
3509 4033 6.429385 TGAACCAAAACAAAAATATGATGCCC 59.571 34.615 0.00 0.00 0.00 5.36
3510 4034 5.252547 ACCAAAACAAAAATATGATGCCCC 58.747 37.500 0.00 0.00 0.00 5.80
3511 4035 5.222007 ACCAAAACAAAAATATGATGCCCCA 60.222 36.000 0.00 0.00 0.00 4.96
3512 4036 5.709164 CCAAAACAAAAATATGATGCCCCAA 59.291 36.000 0.00 0.00 0.00 4.12
3513 4037 6.127952 CCAAAACAAAAATATGATGCCCCAAG 60.128 38.462 0.00 0.00 0.00 3.61
3514 4038 4.141233 ACAAAAATATGATGCCCCAAGC 57.859 40.909 0.00 0.00 44.14 4.01
3515 4039 3.118298 ACAAAAATATGATGCCCCAAGCC 60.118 43.478 0.00 0.00 42.71 4.35
3516 4040 2.781403 AAATATGATGCCCCAAGCCT 57.219 45.000 0.00 0.00 42.71 4.58
3517 4041 2.005370 AATATGATGCCCCAAGCCTG 57.995 50.000 0.00 0.00 42.71 4.85
3518 4042 0.855598 ATATGATGCCCCAAGCCTGT 59.144 50.000 0.00 0.00 42.71 4.00
3519 4043 0.630673 TATGATGCCCCAAGCCTGTT 59.369 50.000 0.00 0.00 42.71 3.16
3520 4044 0.685458 ATGATGCCCCAAGCCTGTTC 60.685 55.000 0.00 0.00 42.71 3.18
3521 4045 1.000396 GATGCCCCAAGCCTGTTCT 60.000 57.895 0.00 0.00 42.71 3.01
3522 4046 0.613012 GATGCCCCAAGCCTGTTCTT 60.613 55.000 0.00 0.00 42.71 2.52
3523 4047 0.901580 ATGCCCCAAGCCTGTTCTTG 60.902 55.000 0.00 0.00 42.71 3.02
3524 4048 2.935740 GCCCCAAGCCTGTTCTTGC 61.936 63.158 0.00 0.00 41.47 4.01
3525 4049 2.278330 CCCCAAGCCTGTTCTTGCC 61.278 63.158 0.00 0.00 41.47 4.52
3526 4050 1.531365 CCCAAGCCTGTTCTTGCCA 60.531 57.895 0.00 0.00 41.47 4.92
3527 4051 1.662044 CCAAGCCTGTTCTTGCCAC 59.338 57.895 0.00 0.00 41.47 5.01
3528 4052 1.662044 CAAGCCTGTTCTTGCCACC 59.338 57.895 0.00 0.00 37.27 4.61
3529 4053 1.898574 AAGCCTGTTCTTGCCACCG 60.899 57.895 0.00 0.00 0.00 4.94
3530 4054 4.043200 GCCTGTTCTTGCCACCGC 62.043 66.667 0.00 0.00 0.00 5.68
3531 4055 2.281761 CCTGTTCTTGCCACCGCT 60.282 61.111 0.00 0.00 35.36 5.52
3532 4056 2.620112 CCTGTTCTTGCCACCGCTG 61.620 63.158 0.00 0.00 35.36 5.18
3533 4057 3.259425 CTGTTCTTGCCACCGCTGC 62.259 63.158 0.00 0.00 35.36 5.25
3534 4058 4.043200 GTTCTTGCCACCGCTGCC 62.043 66.667 0.00 0.00 35.36 4.85
3535 4059 4.577677 TTCTTGCCACCGCTGCCA 62.578 61.111 0.00 0.00 35.36 4.92
3536 4060 4.577677 TCTTGCCACCGCTGCCAA 62.578 61.111 0.00 0.00 35.36 4.52
3537 4061 3.604667 CTTGCCACCGCTGCCAAA 61.605 61.111 0.00 0.00 35.36 3.28
3538 4062 3.149338 CTTGCCACCGCTGCCAAAA 62.149 57.895 0.00 0.00 35.36 2.44
3539 4063 2.641439 CTTGCCACCGCTGCCAAAAA 62.641 55.000 0.00 0.00 35.36 1.94
3557 4081 4.906747 AAAAATATGGCTGCCCTTTTGA 57.093 36.364 17.53 0.00 0.00 2.69
3558 4082 5.440207 AAAAATATGGCTGCCCTTTTGAT 57.560 34.783 17.53 4.08 0.00 2.57
3559 4083 4.411256 AAATATGGCTGCCCTTTTGATG 57.589 40.909 17.53 0.00 0.00 3.07
3560 4084 2.530460 TATGGCTGCCCTTTTGATGT 57.470 45.000 17.53 0.00 0.00 3.06
3561 4085 2.530460 ATGGCTGCCCTTTTGATGTA 57.470 45.000 17.53 0.00 0.00 2.29
3562 4086 1.544724 TGGCTGCCCTTTTGATGTAC 58.455 50.000 17.53 0.00 0.00 2.90
3563 4087 1.202989 TGGCTGCCCTTTTGATGTACA 60.203 47.619 17.53 0.00 0.00 2.90
3564 4088 1.474077 GGCTGCCCTTTTGATGTACAG 59.526 52.381 7.66 0.00 0.00 2.74
3565 4089 1.474077 GCTGCCCTTTTGATGTACAGG 59.526 52.381 0.33 0.00 0.00 4.00
3566 4090 2.795329 CTGCCCTTTTGATGTACAGGT 58.205 47.619 0.33 0.00 0.00 4.00
3567 4091 2.749621 CTGCCCTTTTGATGTACAGGTC 59.250 50.000 0.33 0.00 0.00 3.85
3568 4092 2.375174 TGCCCTTTTGATGTACAGGTCT 59.625 45.455 0.33 0.00 0.00 3.85
3569 4093 3.181434 TGCCCTTTTGATGTACAGGTCTT 60.181 43.478 0.33 0.00 0.00 3.01
3570 4094 3.826729 GCCCTTTTGATGTACAGGTCTTT 59.173 43.478 0.33 0.00 0.00 2.52
3571 4095 4.280929 GCCCTTTTGATGTACAGGTCTTTT 59.719 41.667 0.33 0.00 0.00 2.27
3572 4096 5.221441 GCCCTTTTGATGTACAGGTCTTTTT 60.221 40.000 0.33 0.00 0.00 1.94
3591 4115 5.627499 TTTTTGACATCAGATGGTACTGC 57.373 39.130 15.13 0.00 37.75 4.40
3592 4116 2.584492 TGACATCAGATGGTACTGCG 57.416 50.000 15.13 0.00 37.75 5.18
3593 4117 1.136891 TGACATCAGATGGTACTGCGG 59.863 52.381 15.13 0.00 37.75 5.69
3594 4118 1.137086 GACATCAGATGGTACTGCGGT 59.863 52.381 15.13 2.42 37.75 5.68
3595 4119 1.134699 ACATCAGATGGTACTGCGGTG 60.135 52.381 15.13 0.00 37.75 4.94
3596 4120 0.465705 ATCAGATGGTACTGCGGTGG 59.534 55.000 8.92 0.00 37.75 4.61
3597 4121 1.815421 CAGATGGTACTGCGGTGGC 60.815 63.158 8.92 0.57 40.52 5.01
3598 4122 2.513897 GATGGTACTGCGGTGGCC 60.514 66.667 8.92 11.16 38.85 5.36
3609 4133 4.598257 GGTGGCCGATATGATCCG 57.402 61.111 0.00 0.00 0.00 4.18
3610 4134 1.741770 GGTGGCCGATATGATCCGC 60.742 63.158 0.00 0.00 33.61 5.54
3611 4135 1.005037 GTGGCCGATATGATCCGCA 60.005 57.895 0.00 0.00 35.62 5.69
3612 4136 0.602638 GTGGCCGATATGATCCGCAA 60.603 55.000 0.00 0.00 35.62 4.85
3613 4137 0.107643 TGGCCGATATGATCCGCAAA 59.892 50.000 0.00 0.00 35.62 3.68
3614 4138 1.234821 GGCCGATATGATCCGCAAAA 58.765 50.000 0.00 0.00 35.62 2.44
3615 4139 1.069227 GGCCGATATGATCCGCAAAAC 60.069 52.381 0.00 0.00 35.62 2.43
3616 4140 1.398451 GCCGATATGATCCGCAAAACG 60.398 52.381 0.00 0.00 43.15 3.60
3617 4141 1.398451 CCGATATGATCCGCAAAACGC 60.398 52.381 0.00 0.00 41.76 4.84
3618 4142 1.260297 CGATATGATCCGCAAAACGCA 59.740 47.619 0.00 0.00 42.60 5.24
3619 4143 2.096268 CGATATGATCCGCAAAACGCAT 60.096 45.455 0.00 0.00 42.60 4.73
3620 4144 2.753989 TATGATCCGCAAAACGCATG 57.246 45.000 0.00 0.00 42.60 4.06
3621 4145 1.093972 ATGATCCGCAAAACGCATGA 58.906 45.000 0.00 0.00 42.60 3.07
3622 4146 1.093972 TGATCCGCAAAACGCATGAT 58.906 45.000 0.00 0.00 42.60 2.45
3623 4147 1.202166 TGATCCGCAAAACGCATGATG 60.202 47.619 0.00 0.00 42.60 3.07
3624 4148 0.101040 ATCCGCAAAACGCATGATGG 59.899 50.000 0.00 0.00 42.60 3.51
3625 4149 0.957888 TCCGCAAAACGCATGATGGA 60.958 50.000 0.00 0.00 42.60 3.41
3626 4150 0.109365 CCGCAAAACGCATGATGGAA 60.109 50.000 0.00 0.00 42.60 3.53
3627 4151 0.984109 CGCAAAACGCATGATGGAAC 59.016 50.000 0.00 0.00 42.60 3.62
3628 4152 1.665448 CGCAAAACGCATGATGGAACA 60.665 47.619 0.00 0.00 43.08 3.18
3629 4153 2.402305 GCAAAACGCATGATGGAACAA 58.598 42.857 0.00 0.00 41.75 2.83
3630 4154 2.995258 GCAAAACGCATGATGGAACAAT 59.005 40.909 0.00 0.00 41.75 2.71
3631 4155 3.432933 GCAAAACGCATGATGGAACAATT 59.567 39.130 0.00 0.00 41.75 2.32
3632 4156 4.667161 GCAAAACGCATGATGGAACAATTG 60.667 41.667 3.24 3.24 41.75 2.32
3633 4157 7.031704 GCAAAACGCATGATGGAACAATTGT 62.032 40.000 4.92 4.92 41.75 2.71
3634 4158 7.765725 GCAAAACGCATGATGGAACAATTGTA 61.766 38.462 12.39 0.00 41.75 2.41
3635 4159 8.994819 GCAAAACGCATGATGGAACAATTGTAT 61.995 37.037 12.39 1.27 41.75 2.29
3643 4167 4.597404 TGGAACAATTGTATTTGCAGCA 57.403 36.364 12.39 0.00 31.92 4.41
3644 4168 5.149973 TGGAACAATTGTATTTGCAGCAT 57.850 34.783 12.39 0.00 31.92 3.79
3645 4169 4.930405 TGGAACAATTGTATTTGCAGCATG 59.070 37.500 12.39 0.00 34.25 4.06
3646 4170 4.931002 GGAACAATTGTATTTGCAGCATGT 59.069 37.500 12.39 0.00 39.31 3.21
3647 4171 5.062558 GGAACAATTGTATTTGCAGCATGTC 59.937 40.000 12.39 0.52 39.31 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.795098 AGTAAGAATTATGTGTGCGAAACA 57.205 33.333 0.00 0.00 31.45 2.83
14 15 9.769093 ATTTAGTAAGAATTATGTGTGCGAAAC 57.231 29.630 0.00 0.00 30.46 2.78
15 16 9.767684 CATTTAGTAAGAATTATGTGTGCGAAA 57.232 29.630 0.00 0.00 30.46 3.46
16 17 8.941977 ACATTTAGTAAGAATTATGTGTGCGAA 58.058 29.630 0.00 0.00 30.46 4.70
17 18 8.487313 ACATTTAGTAAGAATTATGTGTGCGA 57.513 30.769 0.00 0.00 30.46 5.10
50 51 4.188462 TGCAACGGGAGACATAGTTAATG 58.812 43.478 0.00 0.00 41.74 1.90
51 52 4.481368 TGCAACGGGAGACATAGTTAAT 57.519 40.909 0.00 0.00 0.00 1.40
52 53 3.965379 TGCAACGGGAGACATAGTTAA 57.035 42.857 0.00 0.00 0.00 2.01
53 54 3.592059 GTTGCAACGGGAGACATAGTTA 58.408 45.455 14.90 0.00 0.00 2.24
54 55 2.423577 GTTGCAACGGGAGACATAGTT 58.576 47.619 14.90 0.00 0.00 2.24
55 56 2.094762 GTTGCAACGGGAGACATAGT 57.905 50.000 14.90 0.00 0.00 2.12
67 68 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
68 69 3.144120 AAATGCCCGTGCGTTGCAA 62.144 52.632 0.00 0.00 45.88 4.08
69 70 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
70 71 3.105157 CAAATGCCCGTGCGTTGC 61.105 61.111 0.00 0.00 45.88 4.17
71 72 2.015627 CACAAATGCCCGTGCGTTG 61.016 57.895 0.00 1.29 45.88 4.10
137 138 4.910195 TCAGCCTGAAAATCTACACACAT 58.090 39.130 0.00 0.00 0.00 3.21
156 169 8.227791 TGTAGCTCTAATTTTAGCGTTTTTCAG 58.772 33.333 0.00 0.00 43.63 3.02
157 170 8.013378 GTGTAGCTCTAATTTTAGCGTTTTTCA 58.987 33.333 0.00 0.65 43.63 2.69
158 171 8.013378 TGTGTAGCTCTAATTTTAGCGTTTTTC 58.987 33.333 0.00 0.00 43.63 2.29
201 214 7.136822 TGGATAGTACACATGATAAAAGGCT 57.863 36.000 0.00 0.00 0.00 4.58
223 236 6.694447 ACAAAATCATGGACTTTCAGAATGG 58.306 36.000 0.00 0.00 36.16 3.16
261 274 6.375455 AGAATGAAATACCTTGAATTGCGAGT 59.625 34.615 0.00 0.00 0.00 4.18
302 315 9.927668 CCTTAAAATTCAAGGATGTAATGTGTT 57.072 29.630 11.66 0.00 44.59 3.32
340 353 1.661463 AGGGCATCTTGGAGTCTGAA 58.339 50.000 0.00 0.00 0.00 3.02
343 356 2.393646 GAGTAGGGCATCTTGGAGTCT 58.606 52.381 0.00 0.00 0.00 3.24
345 358 1.115467 CGAGTAGGGCATCTTGGAGT 58.885 55.000 0.00 0.00 0.00 3.85
440 453 2.782163 CGGTACACACACTCAGATACG 58.218 52.381 0.00 0.00 0.00 3.06
460 473 4.606457 AGAGAATCAACAGTTATTGCGC 57.394 40.909 0.00 0.00 37.82 6.09
478 491 8.415192 TGCGTGGTATACAATACTTTTAAGAG 57.585 34.615 5.01 0.00 0.00 2.85
480 493 8.067784 CCATGCGTGGTATACAATACTTTTAAG 58.932 37.037 17.42 0.00 40.83 1.85
482 495 7.485418 CCATGCGTGGTATACAATACTTTTA 57.515 36.000 17.42 0.00 40.83 1.52
513 802 3.640967 AGAGAGAGAGAGAGAGAGAGCTC 59.359 52.174 5.27 5.27 41.62 4.09
514 803 3.640967 GAGAGAGAGAGAGAGAGAGAGCT 59.359 52.174 0.00 0.00 0.00 4.09
515 804 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
532 821 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
533 822 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
534 823 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
535 824 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
536 825 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
537 826 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
538 827 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
539 828 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
540 829 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
541 830 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
542 831 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
543 832 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
544 833 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
545 834 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
546 835 4.648762 AGACAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
547 836 4.614475 AGACAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
548 837 4.648762 AGAGACAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
549 838 4.614475 AGAGACAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
550 839 4.202202 GGAGAGACAGAGAGAGAGAGAGAG 60.202 54.167 0.00 0.00 0.00 3.20
551 840 3.706594 GGAGAGACAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
552 841 3.708631 AGGAGAGACAGAGAGAGAGAGAG 59.291 52.174 0.00 0.00 0.00 3.20
553 842 3.724478 AGGAGAGACAGAGAGAGAGAGA 58.276 50.000 0.00 0.00 0.00 3.10
554 843 4.494091 AAGGAGAGACAGAGAGAGAGAG 57.506 50.000 0.00 0.00 0.00 3.20
555 844 5.428457 ACATAAGGAGAGACAGAGAGAGAGA 59.572 44.000 0.00 0.00 0.00 3.10
556 845 5.684704 ACATAAGGAGAGACAGAGAGAGAG 58.315 45.833 0.00 0.00 0.00 3.20
557 846 5.708736 ACATAAGGAGAGACAGAGAGAGA 57.291 43.478 0.00 0.00 0.00 3.10
558 847 5.450412 GCAACATAAGGAGAGACAGAGAGAG 60.450 48.000 0.00 0.00 0.00 3.20
559 848 4.400884 GCAACATAAGGAGAGACAGAGAGA 59.599 45.833 0.00 0.00 0.00 3.10
560 849 4.159321 TGCAACATAAGGAGAGACAGAGAG 59.841 45.833 0.00 0.00 0.00 3.20
561 850 4.081972 GTGCAACATAAGGAGAGACAGAGA 60.082 45.833 0.00 0.00 36.32 3.10
562 851 4.180057 GTGCAACATAAGGAGAGACAGAG 58.820 47.826 0.00 0.00 36.32 3.35
563 852 3.055819 GGTGCAACATAAGGAGAGACAGA 60.056 47.826 0.00 0.00 39.98 3.41
564 853 3.055530 AGGTGCAACATAAGGAGAGACAG 60.056 47.826 3.64 0.00 39.98 3.51
565 854 2.906389 AGGTGCAACATAAGGAGAGACA 59.094 45.455 3.64 0.00 39.98 3.41
566 855 3.526534 GAGGTGCAACATAAGGAGAGAC 58.473 50.000 3.64 0.00 39.98 3.36
567 856 2.501723 GGAGGTGCAACATAAGGAGAGA 59.498 50.000 3.64 0.00 39.98 3.10
568 857 2.739932 CGGAGGTGCAACATAAGGAGAG 60.740 54.545 3.64 0.00 39.98 3.20
569 858 1.207089 CGGAGGTGCAACATAAGGAGA 59.793 52.381 3.64 0.00 39.98 3.71
570 859 1.656652 CGGAGGTGCAACATAAGGAG 58.343 55.000 3.64 0.00 39.98 3.69
571 860 3.853104 CGGAGGTGCAACATAAGGA 57.147 52.632 3.64 0.00 39.98 3.36
849 1172 1.447140 TCAGCATTCCCACGTACGC 60.447 57.895 16.72 0.00 0.00 4.42
861 1184 1.171308 GTTGCACATGGAGTCAGCAT 58.829 50.000 0.00 0.00 34.87 3.79
880 1203 1.017387 GGTCGGTAGGTAGGTACGTG 58.983 60.000 0.00 0.00 0.00 4.49
925 1248 0.036010 GGCCGTGCATGAGCCTATAT 60.036 55.000 23.50 0.00 43.62 0.86
926 1249 1.371183 GGCCGTGCATGAGCCTATA 59.629 57.895 23.50 0.00 43.62 1.31
1063 1411 5.358160 GCAAGGCAGTAAGGAGTTTATGATT 59.642 40.000 0.00 0.00 0.00 2.57
1112 1466 6.144078 ACATGTATACTTGTAGATCGTGCA 57.856 37.500 19.72 0.00 33.24 4.57
1115 1469 9.947669 GAACTAACATGTATACTTGTAGATCGT 57.052 33.333 20.98 12.40 34.38 3.73
1175 1531 4.537015 CGCTGTCACGTAGATCAATCATA 58.463 43.478 0.00 0.00 0.00 2.15
1200 1556 4.803426 CCTCGAGCCTCCACACGC 62.803 72.222 6.99 0.00 0.00 5.34
1323 1679 2.751166 CGTAGGGATAGCTCCATTGG 57.249 55.000 0.00 0.00 44.08 3.16
1500 1858 6.359087 GTCTTAGATATAAGGTTGTACGCACG 59.641 42.308 7.25 0.00 0.00 5.34
1501 1859 6.640092 GGTCTTAGATATAAGGTTGTACGCAC 59.360 42.308 7.25 0.00 0.00 5.34
1502 1860 6.321945 TGGTCTTAGATATAAGGTTGTACGCA 59.678 38.462 7.25 0.00 0.00 5.24
1503 1861 6.742109 TGGTCTTAGATATAAGGTTGTACGC 58.258 40.000 7.25 0.00 0.00 4.42
1820 2181 4.883585 TGAAGCTGTTGTTTTGAGATGACT 59.116 37.500 0.00 0.00 0.00 3.41
1947 2308 6.037830 GGTTAGTGTTTGCAAGTTTGAGTCTA 59.962 38.462 0.00 0.00 0.00 2.59
2051 2413 3.673338 CGTTCTTTGCAATCTCTGTCGTA 59.327 43.478 0.00 0.00 0.00 3.43
2057 2419 2.154462 CCCACGTTCTTTGCAATCTCT 58.846 47.619 0.00 0.00 0.00 3.10
2066 2428 1.418637 TGTAGCTTCCCCACGTTCTTT 59.581 47.619 0.00 0.00 0.00 2.52
2216 2578 2.945668 GCCCATCAGGTGTTCTATGTTC 59.054 50.000 0.00 0.00 38.26 3.18
2219 2581 2.684881 GTTGCCCATCAGGTGTTCTATG 59.315 50.000 0.00 0.00 38.26 2.23
2358 2726 9.577110 AACAGATGTTGAATAAAATGCATACAG 57.423 29.630 0.00 0.00 36.80 2.74
2417 2785 2.100584 TGCGCTTGAAATTGTTTGACCT 59.899 40.909 9.73 0.00 0.00 3.85
2418 2786 2.468831 TGCGCTTGAAATTGTTTGACC 58.531 42.857 9.73 0.00 0.00 4.02
2461 2829 0.617820 AGTACCCAAGCTCGGTGGAT 60.618 55.000 14.30 0.00 38.54 3.41
2473 2841 2.038033 GCTAACTTGTCCACAGTACCCA 59.962 50.000 0.00 0.00 0.00 4.51
2509 2877 6.014755 CAGGATTCTTGCATAGGTCATAGAGA 60.015 42.308 0.00 0.00 0.00 3.10
2542 2910 3.952967 GGTAAGTCTCGTCCCAGTAGAAT 59.047 47.826 0.00 0.00 0.00 2.40
2688 3056 4.347607 ACCTGGCAAAAAGATAATGCTCT 58.652 39.130 0.00 0.00 39.94 4.09
2690 3058 5.394553 GCTAACCTGGCAAAAAGATAATGCT 60.395 40.000 0.00 0.00 39.94 3.79
2694 3062 6.664428 AAAGCTAACCTGGCAAAAAGATAA 57.336 33.333 0.00 0.00 0.00 1.75
2841 3212 7.610305 TCTTGACTTAAACAGAACCCATTATCC 59.390 37.037 0.00 0.00 0.00 2.59
2843 3214 9.533831 AATCTTGACTTAAACAGAACCCATTAT 57.466 29.630 0.00 0.00 0.00 1.28
2844 3215 8.934023 AATCTTGACTTAAACAGAACCCATTA 57.066 30.769 0.00 0.00 0.00 1.90
2845 3216 7.839680 AATCTTGACTTAAACAGAACCCATT 57.160 32.000 0.00 0.00 0.00 3.16
2848 3278 7.739498 TGTAATCTTGACTTAAACAGAACCC 57.261 36.000 0.00 0.00 0.00 4.11
2871 3301 7.237920 TCGCACATGCAAAGCTATATATATG 57.762 36.000 5.44 0.00 42.21 1.78
2879 3309 0.652071 CGATCGCACATGCAAAGCTA 59.348 50.000 0.26 0.00 42.21 3.32
2880 3310 1.300971 ACGATCGCACATGCAAAGCT 61.301 50.000 16.60 0.00 42.21 3.74
2881 3311 0.454957 AACGATCGCACATGCAAAGC 60.455 50.000 16.60 0.00 42.21 3.51
2882 3312 1.253116 CAACGATCGCACATGCAAAG 58.747 50.000 16.60 0.00 42.21 2.77
2883 3313 0.109827 CCAACGATCGCACATGCAAA 60.110 50.000 16.60 0.00 42.21 3.68
2884 3314 1.233950 ACCAACGATCGCACATGCAA 61.234 50.000 16.60 0.00 42.21 4.08
2885 3315 1.634757 GACCAACGATCGCACATGCA 61.635 55.000 16.60 0.00 42.21 3.96
2898 3328 1.583054 ACGCAGTCTTTGAGACCAAC 58.417 50.000 4.56 0.00 46.18 3.77
2918 3348 4.985409 GGAGCATTACCTCAATCGACTAAG 59.015 45.833 0.00 0.00 33.47 2.18
2952 3382 1.074752 GAAAGAAGAGCAGCACGAGG 58.925 55.000 0.00 0.00 0.00 4.63
2968 3398 1.155424 GCCACGTCGAACACCTGAAA 61.155 55.000 0.00 0.00 0.00 2.69
2969 3399 1.593209 GCCACGTCGAACACCTGAA 60.593 57.895 0.00 0.00 0.00 3.02
2971 3401 1.433053 TTTGCCACGTCGAACACCTG 61.433 55.000 0.00 0.00 0.00 4.00
2972 3402 1.153329 TTTGCCACGTCGAACACCT 60.153 52.632 0.00 0.00 0.00 4.00
2974 3404 0.042448 GTCTTTGCCACGTCGAACAC 60.042 55.000 0.00 0.00 0.00 3.32
3000 3524 4.961511 TGAGTGCCGGTGTGCGTC 62.962 66.667 1.90 0.00 0.00 5.19
3009 3533 4.704833 CCTGGGGTGTGAGTGCCG 62.705 72.222 0.00 0.00 0.00 5.69
3026 3550 2.727684 GAGAAAGCCGGACGAACGC 61.728 63.158 5.05 0.00 0.00 4.84
3028 3552 3.460144 CGAGAAAGCCGGACGAAC 58.540 61.111 5.05 0.00 0.00 3.95
3036 3560 1.735018 GAAAGAAGAGCCGAGAAAGCC 59.265 52.381 0.00 0.00 0.00 4.35
3048 3572 5.652014 ACCAGAACAAACACATGAAAGAAGA 59.348 36.000 0.00 0.00 0.00 2.87
3056 3580 3.374745 GCAGAACCAGAACAAACACATG 58.625 45.455 0.00 0.00 0.00 3.21
3058 3582 1.748493 GGCAGAACCAGAACAAACACA 59.252 47.619 0.00 0.00 38.86 3.72
3078 3602 1.153168 CGGGGCCTACATGGTGAAG 60.153 63.158 0.84 0.00 38.35 3.02
3094 3618 4.148825 ACAGCCTTAGCGAGCCGG 62.149 66.667 0.00 0.00 46.67 6.13
3103 3627 3.247442 CGACGACATAAACACAGCCTTA 58.753 45.455 0.00 0.00 0.00 2.69
3126 3650 4.287067 ACTGTTCTGACAAGATGTATGGGT 59.713 41.667 0.00 0.00 34.85 4.51
3134 3658 2.093973 CCGGCTACTGTTCTGACAAGAT 60.094 50.000 0.00 0.00 34.85 2.40
3142 3666 5.353400 GCTTTTAATTACCGGCTACTGTTCT 59.647 40.000 0.00 0.00 0.00 3.01
3143 3667 5.122711 TGCTTTTAATTACCGGCTACTGTTC 59.877 40.000 0.00 0.00 0.00 3.18
3154 3678 4.231439 CAACCCGTGTGCTTTTAATTACC 58.769 43.478 0.00 0.00 0.00 2.85
3171 3695 0.179018 AGTTCTCACAGGCACAACCC 60.179 55.000 0.00 0.00 40.58 4.11
3175 3699 0.836606 TGGAAGTTCTCACAGGCACA 59.163 50.000 2.25 0.00 0.00 4.57
3189 3713 0.035881 TGCAGAGAGCCAAGTGGAAG 59.964 55.000 0.18 0.00 44.83 3.46
3190 3714 0.035881 CTGCAGAGAGCCAAGTGGAA 59.964 55.000 8.42 0.00 44.83 3.53
3208 3732 0.405585 CAAGGTCATCCCCAACACCT 59.594 55.000 0.00 0.00 41.27 4.00
3214 3738 1.303236 CAACGCAAGGTCATCCCCA 60.303 57.895 0.00 0.00 46.39 4.96
3257 3781 3.131709 AGCTTGTTACAGACATGTGCT 57.868 42.857 1.15 0.00 40.79 4.40
3260 3784 4.283467 TGACCTAGCTTGTTACAGACATGT 59.717 41.667 0.00 0.00 43.76 3.21
3289 3813 7.326789 CACGCTCAAAAGATTCACAAAATATGT 59.673 33.333 0.00 0.00 45.34 2.29
3290 3814 7.326789 ACACGCTCAAAAGATTCACAAAATATG 59.673 33.333 0.00 0.00 0.00 1.78
3291 3815 7.370383 ACACGCTCAAAAGATTCACAAAATAT 58.630 30.769 0.00 0.00 0.00 1.28
3292 3816 6.734137 ACACGCTCAAAAGATTCACAAAATA 58.266 32.000 0.00 0.00 0.00 1.40
3293 3817 5.591099 ACACGCTCAAAAGATTCACAAAAT 58.409 33.333 0.00 0.00 0.00 1.82
3294 3818 4.992688 ACACGCTCAAAAGATTCACAAAA 58.007 34.783 0.00 0.00 0.00 2.44
3296 3820 4.319477 GCTACACGCTCAAAAGATTCACAA 60.319 41.667 0.00 0.00 35.14 3.33
3298 3822 3.737305 GCTACACGCTCAAAAGATTCAC 58.263 45.455 0.00 0.00 35.14 3.18
3311 3835 0.453282 CACACATTGCAGCTACACGC 60.453 55.000 0.00 0.00 39.57 5.34
3312 3836 0.166597 CCACACATTGCAGCTACACG 59.833 55.000 0.00 0.00 0.00 4.49
3313 3837 1.522668 TCCACACATTGCAGCTACAC 58.477 50.000 0.00 0.00 0.00 2.90
3314 3838 2.495155 ATCCACACATTGCAGCTACA 57.505 45.000 0.00 0.00 0.00 2.74
3315 3839 3.191162 TGAAATCCACACATTGCAGCTAC 59.809 43.478 0.00 0.00 0.00 3.58
3316 3840 3.191162 GTGAAATCCACACATTGCAGCTA 59.809 43.478 0.00 0.00 45.03 3.32
3317 3841 2.029649 GTGAAATCCACACATTGCAGCT 60.030 45.455 0.00 0.00 45.03 4.24
3318 3842 2.331194 GTGAAATCCACACATTGCAGC 58.669 47.619 0.00 0.00 45.03 5.25
3372 3896 6.208599 CCCTTAACTTGCTTCCAAATACTTGA 59.791 38.462 0.00 0.00 34.14 3.02
3374 3898 6.311735 TCCCTTAACTTGCTTCCAAATACTT 58.688 36.000 0.00 0.00 0.00 2.24
3381 3905 3.650942 TCTCTTCCCTTAACTTGCTTCCA 59.349 43.478 0.00 0.00 0.00 3.53
3395 3919 4.460731 CCCAGAAAACAATTCTCTCTTCCC 59.539 45.833 0.00 0.00 0.00 3.97
3398 3922 7.660030 TTTTCCCAGAAAACAATTCTCTCTT 57.340 32.000 0.00 0.00 0.00 2.85
3404 3928 7.857734 TTTCCTTTTTCCCAGAAAACAATTC 57.142 32.000 2.10 0.00 0.00 2.17
3407 3931 9.336171 CAATATTTCCTTTTTCCCAGAAAACAA 57.664 29.630 2.10 0.00 32.41 2.83
3410 3934 9.942850 GATCAATATTTCCTTTTTCCCAGAAAA 57.057 29.630 0.00 0.00 32.41 2.29
3413 3937 7.124147 GGTGATCAATATTTCCTTTTTCCCAGA 59.876 37.037 0.00 0.00 0.00 3.86
3421 3945 6.001449 TCTCCGGTGATCAATATTTCCTTT 57.999 37.500 0.00 0.00 0.00 3.11
3439 3963 7.116948 AGCATCTTTCGTTTAATGATATCTCCG 59.883 37.037 3.98 0.00 32.30 4.63
3440 3964 8.226448 CAGCATCTTTCGTTTAATGATATCTCC 58.774 37.037 3.98 0.00 32.30 3.71
3441 3965 7.743838 GCAGCATCTTTCGTTTAATGATATCTC 59.256 37.037 3.98 0.00 32.30 2.75
3442 3966 7.443575 AGCAGCATCTTTCGTTTAATGATATCT 59.556 33.333 3.98 0.00 32.30 1.98
3443 3967 7.533222 CAGCAGCATCTTTCGTTTAATGATATC 59.467 37.037 0.00 0.00 32.30 1.63
3444 3968 7.358066 CAGCAGCATCTTTCGTTTAATGATAT 58.642 34.615 0.00 0.00 32.30 1.63
3445 3969 6.718388 CAGCAGCATCTTTCGTTTAATGATA 58.282 36.000 0.00 0.00 32.30 2.15
3446 3970 5.575957 CAGCAGCATCTTTCGTTTAATGAT 58.424 37.500 0.00 0.00 33.43 2.45
3447 3971 4.672542 GCAGCAGCATCTTTCGTTTAATGA 60.673 41.667 0.00 0.00 41.58 2.57
3448 3972 3.545078 GCAGCAGCATCTTTCGTTTAATG 59.455 43.478 0.00 0.00 41.58 1.90
3449 3973 3.762779 GCAGCAGCATCTTTCGTTTAAT 58.237 40.909 0.00 0.00 41.58 1.40
3450 3974 3.201726 GCAGCAGCATCTTTCGTTTAA 57.798 42.857 0.00 0.00 41.58 1.52
3451 3975 2.900122 GCAGCAGCATCTTTCGTTTA 57.100 45.000 0.00 0.00 41.58 2.01
3452 3976 3.780925 GCAGCAGCATCTTTCGTTT 57.219 47.368 0.00 0.00 41.58 3.60
3463 3987 2.211806 CTCTAGGAATTCTGCAGCAGC 58.788 52.381 18.43 3.23 42.57 5.25
3464 3988 3.118847 TCACTCTAGGAATTCTGCAGCAG 60.119 47.826 17.10 17.10 0.00 4.24
3465 3989 2.833943 TCACTCTAGGAATTCTGCAGCA 59.166 45.455 9.47 0.00 0.00 4.41
3466 3990 3.533606 TCACTCTAGGAATTCTGCAGC 57.466 47.619 9.47 0.00 0.00 5.25
3467 3991 4.187694 GGTTCACTCTAGGAATTCTGCAG 58.812 47.826 7.63 7.63 0.00 4.41
3468 3992 3.582647 TGGTTCACTCTAGGAATTCTGCA 59.417 43.478 5.23 0.00 0.00 4.41
3469 3993 4.207891 TGGTTCACTCTAGGAATTCTGC 57.792 45.455 5.23 0.00 0.00 4.26
3470 3994 6.486657 TGTTTTGGTTCACTCTAGGAATTCTG 59.513 38.462 5.23 0.00 0.00 3.02
3471 3995 6.601332 TGTTTTGGTTCACTCTAGGAATTCT 58.399 36.000 5.23 0.00 0.00 2.40
3472 3996 6.877611 TGTTTTGGTTCACTCTAGGAATTC 57.122 37.500 0.00 0.00 0.00 2.17
3473 3997 7.654022 TTTGTTTTGGTTCACTCTAGGAATT 57.346 32.000 0.00 0.00 0.00 2.17
3474 3998 7.654022 TTTTGTTTTGGTTCACTCTAGGAAT 57.346 32.000 0.00 0.00 0.00 3.01
3475 3999 7.469537 TTTTTGTTTTGGTTCACTCTAGGAA 57.530 32.000 0.00 0.00 0.00 3.36
3476 4000 7.654022 ATTTTTGTTTTGGTTCACTCTAGGA 57.346 32.000 0.00 0.00 0.00 2.94
3477 4001 9.410556 CATATTTTTGTTTTGGTTCACTCTAGG 57.589 33.333 0.00 0.00 0.00 3.02
3480 4004 9.480053 CATCATATTTTTGTTTTGGTTCACTCT 57.520 29.630 0.00 0.00 0.00 3.24
3481 4005 8.223100 GCATCATATTTTTGTTTTGGTTCACTC 58.777 33.333 0.00 0.00 0.00 3.51
3482 4006 7.173047 GGCATCATATTTTTGTTTTGGTTCACT 59.827 33.333 0.00 0.00 0.00 3.41
3483 4007 7.297391 GGCATCATATTTTTGTTTTGGTTCAC 58.703 34.615 0.00 0.00 0.00 3.18
3484 4008 6.429385 GGGCATCATATTTTTGTTTTGGTTCA 59.571 34.615 0.00 0.00 0.00 3.18
3485 4009 6.128035 GGGGCATCATATTTTTGTTTTGGTTC 60.128 38.462 0.00 0.00 0.00 3.62
3486 4010 5.709631 GGGGCATCATATTTTTGTTTTGGTT 59.290 36.000 0.00 0.00 0.00 3.67
3487 4011 5.222007 TGGGGCATCATATTTTTGTTTTGGT 60.222 36.000 0.00 0.00 0.00 3.67
3488 4012 5.251764 TGGGGCATCATATTTTTGTTTTGG 58.748 37.500 0.00 0.00 0.00 3.28
3489 4013 6.623331 GCTTGGGGCATCATATTTTTGTTTTG 60.623 38.462 0.00 0.00 41.35 2.44
3490 4014 5.415389 GCTTGGGGCATCATATTTTTGTTTT 59.585 36.000 0.00 0.00 41.35 2.43
3491 4015 4.943093 GCTTGGGGCATCATATTTTTGTTT 59.057 37.500 0.00 0.00 41.35 2.83
3492 4016 4.516323 GCTTGGGGCATCATATTTTTGTT 58.484 39.130 0.00 0.00 41.35 2.83
3493 4017 3.118298 GGCTTGGGGCATCATATTTTTGT 60.118 43.478 0.00 0.00 44.01 2.83
3494 4018 3.135167 AGGCTTGGGGCATCATATTTTTG 59.865 43.478 0.00 0.00 44.01 2.44
3495 4019 3.135167 CAGGCTTGGGGCATCATATTTTT 59.865 43.478 0.00 0.00 44.01 1.94
3496 4020 2.701951 CAGGCTTGGGGCATCATATTTT 59.298 45.455 0.00 0.00 44.01 1.82
3497 4021 2.322658 CAGGCTTGGGGCATCATATTT 58.677 47.619 0.00 0.00 44.01 1.40
3498 4022 1.218704 ACAGGCTTGGGGCATCATATT 59.781 47.619 0.00 0.00 44.01 1.28
3499 4023 0.855598 ACAGGCTTGGGGCATCATAT 59.144 50.000 0.00 0.00 44.01 1.78
3500 4024 0.630673 AACAGGCTTGGGGCATCATA 59.369 50.000 0.00 0.00 44.01 2.15
3501 4025 0.685458 GAACAGGCTTGGGGCATCAT 60.685 55.000 0.00 0.00 44.01 2.45
3502 4026 1.304381 GAACAGGCTTGGGGCATCA 60.304 57.895 0.00 0.00 44.01 3.07
3503 4027 0.613012 AAGAACAGGCTTGGGGCATC 60.613 55.000 0.00 0.00 44.01 3.91
3504 4028 0.901580 CAAGAACAGGCTTGGGGCAT 60.902 55.000 0.00 0.00 41.15 4.40
3505 4029 1.531365 CAAGAACAGGCTTGGGGCA 60.531 57.895 0.00 0.00 41.15 5.36
3506 4030 2.935740 GCAAGAACAGGCTTGGGGC 61.936 63.158 0.00 0.00 44.17 5.80
3507 4031 2.278330 GGCAAGAACAGGCTTGGGG 61.278 63.158 0.00 0.00 44.17 4.96
3508 4032 1.531365 TGGCAAGAACAGGCTTGGG 60.531 57.895 0.00 0.00 44.17 4.12
3509 4033 1.662044 GTGGCAAGAACAGGCTTGG 59.338 57.895 0.00 0.00 44.17 3.61
3510 4034 1.662044 GGTGGCAAGAACAGGCTTG 59.338 57.895 0.00 0.00 46.18 4.01
3511 4035 1.898574 CGGTGGCAAGAACAGGCTT 60.899 57.895 0.00 0.00 0.00 4.35
3512 4036 2.281761 CGGTGGCAAGAACAGGCT 60.282 61.111 0.00 0.00 0.00 4.58
3513 4037 4.043200 GCGGTGGCAAGAACAGGC 62.043 66.667 0.00 0.00 39.62 4.85
3514 4038 2.281761 AGCGGTGGCAAGAACAGG 60.282 61.111 0.00 0.00 43.41 4.00
3515 4039 2.949106 CAGCGGTGGCAAGAACAG 59.051 61.111 6.74 0.00 43.41 3.16
3516 4040 3.286751 GCAGCGGTGGCAAGAACA 61.287 61.111 17.54 0.00 43.41 3.18
3536 4060 4.906747 TCAAAAGGGCAGCCATATTTTT 57.093 36.364 15.19 11.01 0.00 1.94
3537 4061 4.225717 ACATCAAAAGGGCAGCCATATTTT 59.774 37.500 15.19 13.84 0.00 1.82
3538 4062 3.776417 ACATCAAAAGGGCAGCCATATTT 59.224 39.130 15.19 8.22 0.00 1.40
3539 4063 3.377573 ACATCAAAAGGGCAGCCATATT 58.622 40.909 15.19 1.41 0.00 1.28
3540 4064 3.036452 ACATCAAAAGGGCAGCCATAT 57.964 42.857 15.19 0.00 0.00 1.78
3541 4065 2.530460 ACATCAAAAGGGCAGCCATA 57.470 45.000 15.19 0.00 0.00 2.74
3542 4066 2.102578 GTACATCAAAAGGGCAGCCAT 58.897 47.619 15.19 1.92 0.00 4.40
3543 4067 1.202989 TGTACATCAAAAGGGCAGCCA 60.203 47.619 15.19 0.00 0.00 4.75
3544 4068 1.474077 CTGTACATCAAAAGGGCAGCC 59.526 52.381 1.26 1.26 0.00 4.85
3545 4069 1.474077 CCTGTACATCAAAAGGGCAGC 59.526 52.381 0.00 0.00 0.00 5.25
3546 4070 2.749621 GACCTGTACATCAAAAGGGCAG 59.250 50.000 0.00 0.00 37.80 4.85
3547 4071 2.375174 AGACCTGTACATCAAAAGGGCA 59.625 45.455 5.31 0.00 40.62 5.36
3548 4072 3.073274 AGACCTGTACATCAAAAGGGC 57.927 47.619 0.00 0.00 38.19 5.19
3549 4073 6.405278 AAAAAGACCTGTACATCAAAAGGG 57.595 37.500 0.00 0.00 33.87 3.95
3569 4093 4.154015 CGCAGTACCATCTGATGTCAAAAA 59.846 41.667 15.95 0.00 37.61 1.94
3570 4094 3.684305 CGCAGTACCATCTGATGTCAAAA 59.316 43.478 15.95 0.00 37.61 2.44
3571 4095 3.261580 CGCAGTACCATCTGATGTCAAA 58.738 45.455 15.95 0.00 37.61 2.69
3572 4096 2.418609 CCGCAGTACCATCTGATGTCAA 60.419 50.000 15.95 0.00 37.61 3.18
3573 4097 1.136891 CCGCAGTACCATCTGATGTCA 59.863 52.381 15.95 1.03 37.61 3.58
3574 4098 1.137086 ACCGCAGTACCATCTGATGTC 59.863 52.381 15.95 6.73 37.61 3.06
3575 4099 1.134699 CACCGCAGTACCATCTGATGT 60.135 52.381 15.95 7.30 37.61 3.06
3576 4100 1.575244 CACCGCAGTACCATCTGATG 58.425 55.000 10.71 10.71 37.61 3.07
3577 4101 0.465705 CCACCGCAGTACCATCTGAT 59.534 55.000 0.00 0.00 37.61 2.90
3578 4102 1.897423 CCACCGCAGTACCATCTGA 59.103 57.895 0.00 0.00 37.61 3.27
3579 4103 1.815421 GCCACCGCAGTACCATCTG 60.815 63.158 0.00 0.00 38.35 2.90
3580 4104 2.584608 GCCACCGCAGTACCATCT 59.415 61.111 0.00 0.00 34.03 2.90
3581 4105 2.513897 GGCCACCGCAGTACCATC 60.514 66.667 0.00 0.00 36.38 3.51
3582 4106 4.467084 CGGCCACCGCAGTACCAT 62.467 66.667 2.24 0.00 41.17 3.55
3592 4116 1.741770 GCGGATCATATCGGCCACC 60.742 63.158 2.24 0.00 46.24 4.61
3593 4117 3.876300 GCGGATCATATCGGCCAC 58.124 61.111 2.24 0.00 46.24 5.01
3597 4121 1.398451 GCGTTTTGCGGATCATATCGG 60.398 52.381 0.00 0.00 41.69 4.18
3598 4122 1.937359 GCGTTTTGCGGATCATATCG 58.063 50.000 0.00 0.00 41.69 2.92
3609 4133 2.063156 TGTTCCATCATGCGTTTTGC 57.937 45.000 0.00 0.00 46.70 3.68
3610 4134 4.448395 ACAATTGTTCCATCATGCGTTTTG 59.552 37.500 4.92 0.00 0.00 2.44
3611 4135 4.630111 ACAATTGTTCCATCATGCGTTTT 58.370 34.783 4.92 0.00 0.00 2.43
3612 4136 4.255833 ACAATTGTTCCATCATGCGTTT 57.744 36.364 4.92 0.00 0.00 3.60
3613 4137 3.940209 ACAATTGTTCCATCATGCGTT 57.060 38.095 4.92 0.00 0.00 4.84
3614 4138 5.581126 AATACAATTGTTCCATCATGCGT 57.419 34.783 17.78 0.00 0.00 5.24
3615 4139 5.276489 GCAAATACAATTGTTCCATCATGCG 60.276 40.000 17.78 0.00 32.80 4.73
3616 4140 5.581479 TGCAAATACAATTGTTCCATCATGC 59.419 36.000 17.78 16.77 32.80 4.06
3617 4141 6.237996 GCTGCAAATACAATTGTTCCATCATG 60.238 38.462 17.78 8.42 32.80 3.07
3618 4142 5.813672 GCTGCAAATACAATTGTTCCATCAT 59.186 36.000 17.78 0.00 32.80 2.45
3619 4143 5.170021 GCTGCAAATACAATTGTTCCATCA 58.830 37.500 17.78 9.01 32.80 3.07
3620 4144 5.170021 TGCTGCAAATACAATTGTTCCATC 58.830 37.500 17.78 4.80 32.80 3.51
3621 4145 5.149973 TGCTGCAAATACAATTGTTCCAT 57.850 34.783 17.78 0.96 32.80 3.41
3622 4146 4.597404 TGCTGCAAATACAATTGTTCCA 57.403 36.364 17.78 0.00 32.80 3.53
3623 4147 4.931002 ACATGCTGCAAATACAATTGTTCC 59.069 37.500 17.78 1.94 32.80 3.62
3624 4148 6.086319 GACATGCTGCAAATACAATTGTTC 57.914 37.500 17.78 0.00 32.80 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.