Multiple sequence alignment - TraesCS7D01G522100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G522100 chr7D 100.000 2769 0 0 1 2769 619111678 619114446 0.000000e+00 5114.0
1 TraesCS7D01G522100 chr7D 85.921 277 34 5 1862 2136 575145670 575145397 9.700000e-75 291.0
2 TraesCS7D01G522100 chr2D 97.247 908 22 1 1865 2769 8972386 8971479 0.000000e+00 1535.0
3 TraesCS7D01G522100 chr2D 96.642 685 17 4 1862 2543 575684950 575685631 0.000000e+00 1133.0
4 TraesCS7D01G522100 chr2D 99.422 173 1 0 2597 2769 575685630 575685802 5.760000e-82 315.0
5 TraesCS7D01G522100 chr2D 89.655 232 22 2 1865 2095 572033368 572033138 7.500000e-76 294.0
6 TraesCS7D01G522100 chr2D 90.608 181 15 2 1357 1535 418764024 418763844 3.560000e-59 239.0
7 TraesCS7D01G522100 chr2D 83.735 166 21 4 1353 1516 8338669 8338830 4.780000e-33 152.0
8 TraesCS7D01G522100 chr2D 93.333 90 6 0 973 1062 360551208 360551119 1.730000e-27 134.0
9 TraesCS7D01G522100 chr6D 96.586 908 28 1 1865 2769 452911401 452910494 0.000000e+00 1502.0
10 TraesCS7D01G522100 chr6D 87.302 252 31 1 1865 2116 18769645 18769895 1.250000e-73 287.0
11 TraesCS7D01G522100 chr1D 95.958 668 24 1 1865 2529 75916794 75917461 0.000000e+00 1081.0
12 TraesCS7D01G522100 chr1D 95.918 245 10 0 2525 2769 75926028 75926272 5.560000e-107 398.0
13 TraesCS7D01G522100 chr7B 84.350 1131 87 48 679 1770 714049316 714050395 0.000000e+00 1026.0
14 TraesCS7D01G522100 chr7B 85.311 354 39 6 12 361 713919956 713920300 1.220000e-93 353.0
15 TraesCS7D01G522100 chr7B 86.269 335 34 6 30 361 713965844 713966169 1.220000e-93 353.0
16 TraesCS7D01G522100 chr7B 89.823 226 23 0 30 255 713876607 713876832 9.700000e-75 291.0
17 TraesCS7D01G522100 chr7B 93.525 139 7 2 316 454 714453502 714453638 3.610000e-49 206.0
18 TraesCS7D01G522100 chr5A 92.824 641 27 1 2129 2769 28397204 28396583 0.000000e+00 911.0
19 TraesCS7D01G522100 chr5A 95.489 266 10 2 1863 2127 28419780 28419516 9.170000e-115 424.0
20 TraesCS7D01G522100 chr5A 85.268 224 30 2 1299 1519 7453675 7453898 7.710000e-56 228.0
21 TraesCS7D01G522100 chr7A 83.422 561 54 24 3 535 712806682 712807231 4.150000e-133 484.0
22 TraesCS7D01G522100 chr7A 93.985 133 8 0 1658 1790 712808718 712808850 4.680000e-48 202.0
23 TraesCS7D01G522100 chr5D 81.306 444 67 11 1862 2305 443905920 443905493 2.040000e-91 346.0
24 TraesCS7D01G522100 chr5D 78.708 418 57 21 1137 1531 490870140 490870548 1.650000e-62 250.0
25 TraesCS7D01G522100 chr2B 80.870 460 54 18 1136 1573 490790422 490789975 5.720000e-87 331.0
26 TraesCS7D01G522100 chr5B 78.753 433 61 23 1137 1544 605336216 605336642 7.610000e-66 261.0
27 TraesCS7D01G522100 chr5B 83.636 220 33 2 1310 1526 9284816 9285035 1.300000e-48 204.0
28 TraesCS7D01G522100 chr5B 75.138 181 30 9 776 946 605335824 605335999 1.380000e-08 71.3
29 TraesCS7D01G522100 chr1A 85.430 151 22 0 1375 1525 557989554 557989704 1.030000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G522100 chr7D 619111678 619114446 2768 False 5114 5114 100.0000 1 2769 1 chr7D.!!$F1 2768
1 TraesCS7D01G522100 chr2D 8971479 8972386 907 True 1535 1535 97.2470 1865 2769 1 chr2D.!!$R1 904
2 TraesCS7D01G522100 chr2D 575684950 575685802 852 False 724 1133 98.0320 1862 2769 2 chr2D.!!$F2 907
3 TraesCS7D01G522100 chr6D 452910494 452911401 907 True 1502 1502 96.5860 1865 2769 1 chr6D.!!$R1 904
4 TraesCS7D01G522100 chr1D 75916794 75917461 667 False 1081 1081 95.9580 1865 2529 1 chr1D.!!$F1 664
5 TraesCS7D01G522100 chr7B 714049316 714050395 1079 False 1026 1026 84.3500 679 1770 1 chr7B.!!$F4 1091
6 TraesCS7D01G522100 chr5A 28396583 28397204 621 True 911 911 92.8240 2129 2769 1 chr5A.!!$R1 640
7 TraesCS7D01G522100 chr7A 712806682 712808850 2168 False 343 484 88.7035 3 1790 2 chr7A.!!$F1 1787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 2059 0.032678 CACACACGGCAACTCTCTCT 59.967 55.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 3617 0.760567 TGGTGTGTGGCTCTGAGACT 60.761 55.0 12.54 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.341581 CCCTCCGTCTCTCTCCTCTTT 60.342 57.143 0.00 0.00 0.00 2.52
26 27 2.619332 CCTCCGTCTCTCTCCTCTTTCA 60.619 54.545 0.00 0.00 0.00 2.69
27 28 2.422127 CTCCGTCTCTCTCCTCTTTCAC 59.578 54.545 0.00 0.00 0.00 3.18
28 29 1.474879 CCGTCTCTCTCCTCTTTCACC 59.525 57.143 0.00 0.00 0.00 4.02
47 49 2.969443 CGAAGGAGCGAACATTTTGT 57.031 45.000 0.00 0.00 0.00 2.83
50 52 3.303725 CGAAGGAGCGAACATTTTGTGAA 60.304 43.478 0.00 0.00 0.00 3.18
51 53 4.613622 CGAAGGAGCGAACATTTTGTGAAT 60.614 41.667 0.00 0.00 0.00 2.57
52 54 5.390461 CGAAGGAGCGAACATTTTGTGAATA 60.390 40.000 0.00 0.00 0.00 1.75
53 55 5.296813 AGGAGCGAACATTTTGTGAATAC 57.703 39.130 0.00 0.00 0.00 1.89
54 56 4.156008 AGGAGCGAACATTTTGTGAATACC 59.844 41.667 0.00 0.00 0.00 2.73
55 57 4.078363 AGCGAACATTTTGTGAATACCG 57.922 40.909 0.00 0.00 0.00 4.02
56 58 3.500680 AGCGAACATTTTGTGAATACCGT 59.499 39.130 0.00 0.00 0.00 4.83
57 59 3.844099 GCGAACATTTTGTGAATACCGTC 59.156 43.478 0.00 0.00 0.00 4.79
69 71 1.335132 ATACCGTCGGATGGTTGGCT 61.335 55.000 25.84 7.30 38.67 4.75
70 72 0.683828 TACCGTCGGATGGTTGGCTA 60.684 55.000 25.84 5.97 38.67 3.93
82 84 1.202348 GGTTGGCTACCATTTCACTGC 59.798 52.381 13.41 0.00 46.92 4.40
89 91 3.375299 GCTACCATTTCACTGCCTACAAG 59.625 47.826 0.00 0.00 0.00 3.16
92 94 2.095059 CCATTTCACTGCCTACAAGCAC 60.095 50.000 0.00 0.00 38.00 4.40
98 100 3.488090 GCCTACAAGCACGTCGCC 61.488 66.667 6.39 0.00 44.04 5.54
99 101 2.813908 CCTACAAGCACGTCGCCC 60.814 66.667 6.39 0.00 44.04 6.13
111 113 2.358860 TCGCCCGCGGAAATTTGA 60.359 55.556 30.73 11.71 40.25 2.69
112 114 1.747367 TCGCCCGCGGAAATTTGAT 60.747 52.632 30.73 0.00 40.25 2.57
115 117 0.385390 GCCCGCGGAAATTTGATGAT 59.615 50.000 30.73 0.00 0.00 2.45
120 122 4.216257 CCCGCGGAAATTTGATGATATCTT 59.784 41.667 30.73 0.00 0.00 2.40
121 123 5.278463 CCCGCGGAAATTTGATGATATCTTT 60.278 40.000 30.73 0.00 0.00 2.52
164 166 0.034896 CCCTTACAACACCGAGTGCT 59.965 55.000 4.23 0.00 36.98 4.40
168 170 0.747852 TACAACACCGAGTGCTGTGA 59.252 50.000 17.71 5.24 41.88 3.58
180 182 2.046507 CTGTGACAGCAGAGGGCC 60.047 66.667 0.00 0.00 46.50 5.80
181 183 3.947132 CTGTGACAGCAGAGGGCCG 62.947 68.421 0.00 0.00 46.50 6.13
209 211 6.581388 TCAAGGGAATCTTTCTCATATGGT 57.419 37.500 2.13 0.00 32.41 3.55
215 217 6.466326 GGGAATCTTTCTCATATGGTCCATCA 60.466 42.308 7.92 0.00 0.00 3.07
230 234 3.982058 GTCCATCAAGCAGTACTATACGC 59.018 47.826 0.00 0.00 0.00 4.42
232 236 3.736252 CCATCAAGCAGTACTATACGCAC 59.264 47.826 0.00 0.00 33.05 5.34
265 269 8.453238 TCTTCTTAGAGAGAGCGTATTATGTT 57.547 34.615 0.00 0.00 35.37 2.71
266 270 8.346300 TCTTCTTAGAGAGAGCGTATTATGTTG 58.654 37.037 0.00 0.00 35.37 3.33
267 271 6.439599 TCTTAGAGAGAGCGTATTATGTTGC 58.560 40.000 0.00 0.00 0.00 4.17
268 272 3.633235 AGAGAGAGCGTATTATGTTGCG 58.367 45.455 0.00 0.00 0.00 4.85
269 273 3.315470 AGAGAGAGCGTATTATGTTGCGA 59.685 43.478 0.00 0.00 0.00 5.10
270 274 4.022762 AGAGAGAGCGTATTATGTTGCGAT 60.023 41.667 0.00 0.00 0.00 4.58
294 298 5.118286 TCATTCACATCTCGTGCATTGTAT 58.882 37.500 0.00 0.00 45.92 2.29
297 301 3.865164 TCACATCTCGTGCATTGTATCAC 59.135 43.478 0.00 0.00 45.92 3.06
299 303 1.921243 TCTCGTGCATTGTATCACCG 58.079 50.000 0.00 0.00 0.00 4.94
300 304 1.203758 TCTCGTGCATTGTATCACCGT 59.796 47.619 0.00 0.00 0.00 4.83
301 305 2.424246 TCTCGTGCATTGTATCACCGTA 59.576 45.455 0.00 0.00 0.00 4.02
302 306 2.532235 TCGTGCATTGTATCACCGTAC 58.468 47.619 0.00 0.00 0.00 3.67
320 327 1.586422 ACCATGCATGCATCGTAGAC 58.414 50.000 30.07 0.00 42.51 2.59
488 508 1.726865 CGTACGCACGTATACCCCA 59.273 57.895 0.52 0.00 43.31 4.96
501 529 0.339510 TACCCCACCACCCTAGTACC 59.660 60.000 0.00 0.00 0.00 3.34
507 535 0.033699 ACCACCCTAGTACCTCGGAC 60.034 60.000 0.00 0.00 0.00 4.79
528 556 2.101415 CCACTCATGCTGGATCTACGAA 59.899 50.000 3.67 0.00 0.00 3.85
531 559 2.799412 CTCATGCTGGATCTACGAAAGC 59.201 50.000 0.00 0.00 0.00 3.51
535 563 4.400529 TGCTGGATCTACGAAAGCAATA 57.599 40.909 0.00 0.00 40.72 1.90
537 565 4.141937 TGCTGGATCTACGAAAGCAATACT 60.142 41.667 0.00 0.00 40.72 2.12
538 566 5.068591 TGCTGGATCTACGAAAGCAATACTA 59.931 40.000 0.00 0.00 40.72 1.82
539 567 5.402867 GCTGGATCTACGAAAGCAATACTAC 59.597 44.000 0.00 0.00 34.01 2.73
540 568 6.710597 TGGATCTACGAAAGCAATACTACT 57.289 37.500 0.00 0.00 0.00 2.57
541 569 6.504398 TGGATCTACGAAAGCAATACTACTG 58.496 40.000 0.00 0.00 0.00 2.74
542 570 6.096423 TGGATCTACGAAAGCAATACTACTGT 59.904 38.462 0.00 0.00 0.00 3.55
543 571 7.283807 TGGATCTACGAAAGCAATACTACTGTA 59.716 37.037 0.00 0.00 0.00 2.74
544 572 8.298140 GGATCTACGAAAGCAATACTACTGTAT 58.702 37.037 0.00 0.00 40.79 2.29
546 574 7.646314 TCTACGAAAGCAATACTACTGTATCC 58.354 38.462 0.00 0.00 38.33 2.59
547 575 6.216801 ACGAAAGCAATACTACTGTATCCA 57.783 37.500 0.00 0.00 38.33 3.41
548 576 6.040878 ACGAAAGCAATACTACTGTATCCAC 58.959 40.000 0.00 0.00 38.33 4.02
566 622 2.282555 CCACGCTCATGATTTCGTAGTG 59.717 50.000 14.55 9.24 33.51 2.74
576 632 6.703165 TCATGATTTCGTAGTGATTCATCAGG 59.297 38.462 0.00 0.00 37.51 3.86
582 638 4.862574 TCGTAGTGATTCATCAGGAAAACG 59.137 41.667 0.00 0.00 39.39 3.60
584 640 4.286297 AGTGATTCATCAGGAAAACGGA 57.714 40.909 0.00 0.00 39.39 4.69
585 641 4.848357 AGTGATTCATCAGGAAAACGGAT 58.152 39.130 0.00 0.00 39.39 4.18
595 651 1.339929 GGAAAACGGATGTGCCAAAGT 59.660 47.619 0.00 0.00 35.94 2.66
598 654 4.500035 GGAAAACGGATGTGCCAAAGTAAA 60.500 41.667 0.00 0.00 35.94 2.01
599 655 3.636282 AACGGATGTGCCAAAGTAAAC 57.364 42.857 0.00 0.00 35.94 2.01
600 656 2.577700 ACGGATGTGCCAAAGTAAACA 58.422 42.857 0.00 0.00 35.94 2.83
601 657 3.153919 ACGGATGTGCCAAAGTAAACAT 58.846 40.909 0.00 0.00 36.00 2.71
602 658 3.572255 ACGGATGTGCCAAAGTAAACATT 59.428 39.130 0.00 0.00 33.51 2.71
603 659 3.919804 CGGATGTGCCAAAGTAAACATTG 59.080 43.478 0.00 0.00 33.51 2.82
604 660 4.244862 GGATGTGCCAAAGTAAACATTGG 58.755 43.478 11.77 11.77 44.89 3.16
605 661 4.021544 GGATGTGCCAAAGTAAACATTGGA 60.022 41.667 18.62 1.26 44.90 3.53
607 663 6.127479 GGATGTGCCAAAGTAAACATTGGATA 60.127 38.462 18.62 6.00 44.90 2.59
608 664 6.849085 TGTGCCAAAGTAAACATTGGATAT 57.151 33.333 18.62 0.00 44.90 1.63
609 665 6.862209 TGTGCCAAAGTAAACATTGGATATC 58.138 36.000 18.62 0.00 44.90 1.63
610 666 6.435591 TGTGCCAAAGTAAACATTGGATATCA 59.564 34.615 18.62 6.26 44.90 2.15
611 667 6.974622 GTGCCAAAGTAAACATTGGATATCAG 59.025 38.462 18.62 0.00 44.90 2.90
612 668 5.979517 GCCAAAGTAAACATTGGATATCAGC 59.020 40.000 18.62 0.68 44.90 4.26
613 669 6.507023 CCAAAGTAAACATTGGATATCAGCC 58.493 40.000 10.83 0.00 44.90 4.85
621 1516 2.426023 GATATCAGCCGGCCGGTT 59.574 61.111 42.53 36.73 37.65 4.44
634 1529 3.782244 CGGTTGCACTGCTCGCTC 61.782 66.667 1.98 0.00 0.00 5.03
636 1531 3.426568 GTTGCACTGCTCGCTCCC 61.427 66.667 1.98 0.00 0.00 4.30
649 1788 4.547367 CTCCCCCGCCCGTTGATC 62.547 72.222 0.00 0.00 0.00 2.92
665 1804 1.858372 GATCGGCTCTCCTACCTCGC 61.858 65.000 0.00 0.00 0.00 5.03
672 1811 2.865079 CTCTCCTACCTCGCCTCATTA 58.135 52.381 0.00 0.00 0.00 1.90
673 1812 2.554893 CTCTCCTACCTCGCCTCATTAC 59.445 54.545 0.00 0.00 0.00 1.89
674 1813 1.267261 CTCCTACCTCGCCTCATTACG 59.733 57.143 0.00 0.00 0.00 3.18
675 1814 1.030457 CCTACCTCGCCTCATTACGT 58.970 55.000 0.00 0.00 0.00 3.57
676 1815 2.158769 TCCTACCTCGCCTCATTACGTA 60.159 50.000 0.00 0.00 0.00 3.57
677 1816 2.031333 CCTACCTCGCCTCATTACGTAC 60.031 54.545 0.00 0.00 0.00 3.67
678 1817 1.466856 ACCTCGCCTCATTACGTACA 58.533 50.000 0.00 0.00 0.00 2.90
679 1818 1.820519 ACCTCGCCTCATTACGTACAA 59.179 47.619 0.00 0.00 0.00 2.41
680 1819 2.231964 ACCTCGCCTCATTACGTACAAA 59.768 45.455 0.00 0.00 0.00 2.83
681 1820 2.601763 CCTCGCCTCATTACGTACAAAC 59.398 50.000 0.00 0.00 0.00 2.93
682 1821 3.247442 CTCGCCTCATTACGTACAAACA 58.753 45.455 0.00 0.00 0.00 2.83
683 1822 3.247442 TCGCCTCATTACGTACAAACAG 58.753 45.455 0.00 0.00 0.00 3.16
684 1823 3.057386 TCGCCTCATTACGTACAAACAGA 60.057 43.478 0.00 0.00 0.00 3.41
685 1824 3.863424 CGCCTCATTACGTACAAACAGAT 59.137 43.478 0.00 0.00 0.00 2.90
686 1825 4.259810 CGCCTCATTACGTACAAACAGATG 60.260 45.833 0.00 0.00 0.00 2.90
687 1826 4.630069 GCCTCATTACGTACAAACAGATGT 59.370 41.667 0.00 0.00 37.32 3.06
688 1827 5.808540 GCCTCATTACGTACAAACAGATGTA 59.191 40.000 0.00 0.00 34.75 2.29
696 1835 1.269883 ACAAACAGATGTACGCGGTGA 60.270 47.619 12.47 0.00 0.00 4.02
701 1840 2.267426 CAGATGTACGCGGTGATTTCA 58.733 47.619 12.47 0.00 0.00 2.69
707 1846 5.190992 TGTACGCGGTGATTTCATAGTAT 57.809 39.130 12.47 0.00 0.00 2.12
708 1847 6.316440 TGTACGCGGTGATTTCATAGTATA 57.684 37.500 12.47 0.00 0.00 1.47
710 1849 7.372714 TGTACGCGGTGATTTCATAGTATAAT 58.627 34.615 12.47 0.00 0.00 1.28
716 1861 9.419297 GCGGTGATTTCATAGTATAATTCAGTA 57.581 33.333 0.00 0.00 0.00 2.74
736 1881 2.363306 AAGTCCCAAGTCACATGCAA 57.637 45.000 0.00 0.00 0.00 4.08
770 1918 2.181021 GTAGACACGAGGGCACGG 59.819 66.667 8.04 0.77 37.61 4.94
771 1919 2.282674 TAGACACGAGGGCACGGT 60.283 61.111 8.04 3.52 37.61 4.83
772 1920 1.002257 TAGACACGAGGGCACGGTA 60.002 57.895 8.04 0.00 37.61 4.02
773 1921 1.308069 TAGACACGAGGGCACGGTAC 61.308 60.000 8.04 0.00 37.61 3.34
774 1922 2.599578 ACACGAGGGCACGGTACT 60.600 61.111 8.04 0.00 37.61 2.73
775 1923 1.303561 ACACGAGGGCACGGTACTA 60.304 57.895 8.04 0.00 37.61 1.82
776 1924 1.138247 CACGAGGGCACGGTACTAC 59.862 63.158 8.04 0.00 37.61 2.73
777 1925 1.001641 ACGAGGGCACGGTACTACT 60.002 57.895 8.04 0.00 37.61 2.57
788 1936 3.128242 CACGGTACTACTCACAACCTAGG 59.872 52.174 7.41 7.41 0.00 3.02
792 1940 4.398673 GGTACTACTCACAACCTAGGACAG 59.601 50.000 17.98 7.06 0.00 3.51
799 1947 1.913762 AACCTAGGACAGTGGCGCT 60.914 57.895 17.98 0.00 0.00 5.92
800 1948 1.481056 AACCTAGGACAGTGGCGCTT 61.481 55.000 17.98 0.00 0.00 4.68
816 1964 1.571460 CTTCGCTGGTGACAACTGC 59.429 57.895 12.04 12.04 42.06 4.40
836 1984 1.532794 ATTGTCGCAAGGCCCCAAA 60.533 52.632 0.00 0.00 45.49 3.28
861 2009 3.125573 GGAAAACGGGCCGAGAGC 61.126 66.667 35.78 18.19 42.60 4.09
909 2057 1.595382 GCACACACGGCAACTCTCT 60.595 57.895 0.00 0.00 0.00 3.10
911 2059 0.032678 CACACACGGCAACTCTCTCT 59.967 55.000 0.00 0.00 0.00 3.10
915 2063 0.315251 CACGGCAACTCTCTCTCACA 59.685 55.000 0.00 0.00 0.00 3.58
938 2093 1.374758 CAAGTCCGGCGAGCTTCTT 60.375 57.895 9.30 2.35 0.00 2.52
941 2096 1.079750 GTCCGGCGAGCTTCTTTCT 60.080 57.895 9.30 0.00 0.00 2.52
944 2099 1.480954 TCCGGCGAGCTTCTTTCTAAT 59.519 47.619 9.30 0.00 0.00 1.73
945 2100 2.691526 TCCGGCGAGCTTCTTTCTAATA 59.308 45.455 9.30 0.00 0.00 0.98
946 2101 3.131577 TCCGGCGAGCTTCTTTCTAATAA 59.868 43.478 9.30 0.00 0.00 1.40
947 2102 3.245519 CCGGCGAGCTTCTTTCTAATAAC 59.754 47.826 9.30 0.00 0.00 1.89
948 2103 3.863424 CGGCGAGCTTCTTTCTAATAACA 59.137 43.478 0.00 0.00 0.00 2.41
949 2104 4.259850 CGGCGAGCTTCTTTCTAATAACAC 60.260 45.833 0.00 0.00 0.00 3.32
965 2120 1.676635 CACTCCGTCGTCCCCTACA 60.677 63.158 0.00 0.00 0.00 2.74
966 2121 1.075482 ACTCCGTCGTCCCCTACAA 59.925 57.895 0.00 0.00 0.00 2.41
967 2122 0.964358 ACTCCGTCGTCCCCTACAAG 60.964 60.000 0.00 0.00 0.00 3.16
968 2123 1.664321 CTCCGTCGTCCCCTACAAGG 61.664 65.000 0.00 0.00 34.30 3.61
978 2133 0.988832 CCCTACAAGGCTACAACCCA 59.011 55.000 0.00 0.00 32.73 4.51
987 2142 1.911057 GCTACAACCCAAGAAGCCTT 58.089 50.000 0.00 0.00 0.00 4.35
1040 2195 4.441695 CCTCTTCGGCTGCTGCGA 62.442 66.667 9.65 7.65 40.82 5.10
1041 2196 3.184683 CTCTTCGGCTGCTGCGAC 61.185 66.667 9.65 0.00 40.82 5.19
1058 2213 2.126618 CGACGTCAGCGGCTGTAA 60.127 61.111 27.63 8.60 45.61 2.41
1073 2228 2.633488 CTGTAAGCTTAGCCAACTCCC 58.367 52.381 6.38 0.00 0.00 4.30
1089 2244 2.860041 ACTCCCTCCCTAGCTAGAGAAA 59.140 50.000 22.70 2.26 31.43 2.52
1096 2251 3.011369 TCCCTAGCTAGAGAAACACTGGA 59.989 47.826 22.70 13.13 0.00 3.86
1101 2256 6.881602 CCTAGCTAGAGAAACACTGGAAAAAT 59.118 38.462 22.70 0.00 0.00 1.82
1102 2257 6.566197 AGCTAGAGAAACACTGGAAAAATG 57.434 37.500 0.00 0.00 0.00 2.32
1134 2292 4.343526 TGGTTGGTTATGAACTTGTGCATT 59.656 37.500 0.00 0.00 0.00 3.56
1161 2321 2.980233 GGCTGCCTGACGTGCTTT 60.980 61.111 12.43 0.00 0.00 3.51
1205 2365 2.220615 ATCGCCCACATCGTCGACAA 62.221 55.000 17.16 0.00 33.59 3.18
1230 2397 5.794894 GGAACCTCATGTGAGTTCTTCTTA 58.205 41.667 19.37 0.00 40.48 2.10
1233 2400 7.065204 GGAACCTCATGTGAGTTCTTCTTATTC 59.935 40.741 19.37 5.98 40.48 1.75
1236 2403 7.821846 ACCTCATGTGAGTTCTTCTTATTCTTC 59.178 37.037 9.03 0.00 40.48 2.87
1238 2405 9.434420 CTCATGTGAGTTCTTCTTATTCTTCTT 57.566 33.333 1.84 0.00 37.40 2.52
1239 2406 9.212641 TCATGTGAGTTCTTCTTATTCTTCTTG 57.787 33.333 0.00 0.00 0.00 3.02
1241 2408 7.220030 TGTGAGTTCTTCTTATTCTTCTTGCT 58.780 34.615 0.00 0.00 0.00 3.91
1246 2413 9.561069 AGTTCTTCTTATTCTTCTTGCTGTAAA 57.439 29.630 0.00 0.00 0.00 2.01
1254 2421 6.826893 TTCTTCTTGCTGTAAATTTTGTGC 57.173 33.333 0.00 0.00 0.00 4.57
1255 2422 5.900425 TCTTCTTGCTGTAAATTTTGTGCA 58.100 33.333 0.00 1.86 0.00 4.57
1258 2425 7.495279 TCTTCTTGCTGTAAATTTTGTGCAAAT 59.505 29.630 18.18 0.00 39.42 2.32
1260 2427 8.654230 TCTTGCTGTAAATTTTGTGCAAATTA 57.346 26.923 18.18 9.43 43.20 1.40
1261 2428 9.102757 TCTTGCTGTAAATTTTGTGCAAATTAA 57.897 25.926 18.18 7.86 43.20 1.40
1262 2429 9.157259 CTTGCTGTAAATTTTGTGCAAATTAAC 57.843 29.630 18.18 0.93 43.20 2.01
1263 2430 7.340699 TGCTGTAAATTTTGTGCAAATTAACG 58.659 30.769 0.00 0.00 43.20 3.18
1264 2431 7.010552 TGCTGTAAATTTTGTGCAAATTAACGT 59.989 29.630 0.00 0.00 43.20 3.99
1265 2432 7.525854 GCTGTAAATTTTGTGCAAATTAACGTC 59.474 33.333 0.00 0.00 43.20 4.34
1266 2433 7.547961 TGTAAATTTTGTGCAAATTAACGTCG 58.452 30.769 0.00 0.00 43.20 5.12
1267 2434 6.576551 AAATTTTGTGCAAATTAACGTCGT 57.423 29.167 0.00 0.00 43.20 4.34
1268 2435 5.799542 ATTTTGTGCAAATTAACGTCGTC 57.200 34.783 0.00 0.00 30.09 4.20
1269 2436 2.563670 TGTGCAAATTAACGTCGTCG 57.436 45.000 0.00 0.00 43.34 5.12
1270 2437 1.192757 TGTGCAAATTAACGTCGTCGG 59.807 47.619 7.05 0.00 41.85 4.79
1271 2438 1.192980 GTGCAAATTAACGTCGTCGGT 59.807 47.619 7.05 1.71 41.85 4.69
1272 2439 1.456544 TGCAAATTAACGTCGTCGGTC 59.543 47.619 7.05 0.00 41.85 4.79
1273 2440 1.523600 GCAAATTAACGTCGTCGGTCG 60.524 52.381 7.05 8.63 41.85 4.79
1285 2452 3.173599 TCGTCGGTCGAATGATGTAAAC 58.826 45.455 7.12 0.00 45.98 2.01
1288 2455 4.490319 CGTCGGTCGAATGATGTAAACTTG 60.490 45.833 0.00 0.00 42.86 3.16
1292 2459 4.154195 GGTCGAATGATGTAAACTTGTGCT 59.846 41.667 0.00 0.00 0.00 4.40
1296 2463 5.961843 CGAATGATGTAAACTTGTGCTGATC 59.038 40.000 0.00 0.00 0.00 2.92
1320 2502 1.221414 GAACGAACTCAGCTTGCTGT 58.779 50.000 20.20 3.41 0.00 4.40
1321 2503 0.940126 AACGAACTCAGCTTGCTGTG 59.060 50.000 20.20 19.62 0.00 3.66
1326 2508 2.203056 TCAGCTTGCTGTGTGCGT 60.203 55.556 20.20 0.00 46.63 5.24
1350 2532 3.880846 GCGTACATGCTGCTGGCC 61.881 66.667 0.00 0.00 40.92 5.36
1387 2569 0.034616 CCTATGCTCCTGCTGCTACC 59.965 60.000 0.00 0.00 40.48 3.18
1450 2632 4.363990 CCGACTGCTGCGTCCACT 62.364 66.667 15.34 0.00 0.00 4.00
1525 2707 1.405526 GCTTTGACATGAGCCTCGGTA 60.406 52.381 0.00 0.00 32.80 4.02
1526 2708 2.743183 GCTTTGACATGAGCCTCGGTAT 60.743 50.000 0.00 0.00 32.80 2.73
1531 2719 1.687123 ACATGAGCCTCGGTATGTACC 59.313 52.381 0.00 0.00 42.98 3.34
1540 2728 3.181493 CCTCGGTATGTACCACACTACAC 60.181 52.174 9.69 0.00 46.80 2.90
1541 2729 3.419943 TCGGTATGTACCACACTACACA 58.580 45.455 9.69 0.00 46.80 3.72
1542 2730 3.825585 TCGGTATGTACCACACTACACAA 59.174 43.478 9.69 0.00 46.80 3.33
1543 2731 4.463539 TCGGTATGTACCACACTACACAAT 59.536 41.667 9.69 0.00 46.80 2.71
1544 2732 4.802039 CGGTATGTACCACACTACACAATC 59.198 45.833 9.69 0.00 46.80 2.67
1545 2733 5.114081 GGTATGTACCACACTACACAATCC 58.886 45.833 4.34 0.00 45.73 3.01
1547 2735 4.967084 TGTACCACACTACACAATCCTT 57.033 40.909 0.00 0.00 0.00 3.36
1548 2736 4.890088 TGTACCACACTACACAATCCTTC 58.110 43.478 0.00 0.00 0.00 3.46
1549 2737 3.418684 ACCACACTACACAATCCTTCC 57.581 47.619 0.00 0.00 0.00 3.46
1550 2738 2.979678 ACCACACTACACAATCCTTCCT 59.020 45.455 0.00 0.00 0.00 3.36
1563 2751 0.600057 CCTTCCTTTGTCAGCCTTGC 59.400 55.000 0.00 0.00 0.00 4.01
1603 2791 2.190170 TCACCATTGCCGTTTGCGT 61.190 52.632 0.00 0.00 45.60 5.24
1607 2795 0.231790 CCATTGCCGTTTGCGTTTTG 59.768 50.000 0.00 0.00 45.60 2.44
1615 2803 2.215363 CCGTTTGCGTTTTGTTGATGAC 59.785 45.455 0.00 0.00 36.15 3.06
1617 2805 3.545873 CGTTTGCGTTTTGTTGATGACTT 59.454 39.130 0.00 0.00 0.00 3.01
1618 2806 4.031201 CGTTTGCGTTTTGTTGATGACTTT 59.969 37.500 0.00 0.00 0.00 2.66
1619 2807 5.228220 CGTTTGCGTTTTGTTGATGACTTTA 59.772 36.000 0.00 0.00 0.00 1.85
1620 2808 6.237332 CGTTTGCGTTTTGTTGATGACTTTAA 60.237 34.615 0.00 0.00 0.00 1.52
1621 2809 7.449027 GTTTGCGTTTTGTTGATGACTTTAAA 58.551 30.769 0.00 0.00 0.00 1.52
1625 2813 6.569693 GCGTTTTGTTGATGACTTTAAATTGC 59.430 34.615 0.00 0.00 0.00 3.56
1628 2816 4.233789 TGTTGATGACTTTAAATTGCGGC 58.766 39.130 0.00 0.00 0.00 6.53
1648 2836 2.032681 ACTTTCGGAGCTGGGTGC 59.967 61.111 0.00 0.00 43.29 5.01
1660 2848 2.431942 GGGTGCGTCGTCGTGATT 60.432 61.111 3.66 0.00 39.49 2.57
1667 2855 2.179589 GCGTCGTCGTGATTAGCTTTA 58.820 47.619 3.66 0.00 39.49 1.85
1669 2857 3.301007 GCGTCGTCGTGATTAGCTTTAAG 60.301 47.826 3.66 0.00 39.49 1.85
1672 2860 5.164119 CGTCGTCGTGATTAGCTTTAAGTTT 60.164 40.000 0.00 0.00 0.00 2.66
1683 2871 3.384467 AGCTTTAAGTTTTTGGCTGCTCA 59.616 39.130 0.00 0.00 0.00 4.26
1732 2920 3.453679 GGGAAGAGCGCTCCGACT 61.454 66.667 32.94 15.76 0.00 4.18
1790 2978 1.521681 GCTAGTGTGTCCGCCATCC 60.522 63.158 0.00 0.00 0.00 3.51
1791 2979 1.897423 CTAGTGTGTCCGCCATCCA 59.103 57.895 0.00 0.00 0.00 3.41
1792 2980 0.179100 CTAGTGTGTCCGCCATCCAG 60.179 60.000 0.00 0.00 0.00 3.86
1793 2981 2.238847 TAGTGTGTCCGCCATCCAGC 62.239 60.000 0.00 0.00 0.00 4.85
1794 2982 3.321648 TGTGTCCGCCATCCAGCT 61.322 61.111 0.00 0.00 0.00 4.24
1795 2983 2.512515 GTGTCCGCCATCCAGCTC 60.513 66.667 0.00 0.00 0.00 4.09
1796 2984 3.002583 TGTCCGCCATCCAGCTCA 61.003 61.111 0.00 0.00 0.00 4.26
1797 2985 2.268920 GTCCGCCATCCAGCTCAA 59.731 61.111 0.00 0.00 0.00 3.02
1798 2986 1.817099 GTCCGCCATCCAGCTCAAG 60.817 63.158 0.00 0.00 0.00 3.02
1799 2987 1.989508 TCCGCCATCCAGCTCAAGA 60.990 57.895 0.00 0.00 0.00 3.02
1800 2988 1.523258 CCGCCATCCAGCTCAAGAG 60.523 63.158 0.00 0.00 0.00 2.85
1801 2989 1.519246 CGCCATCCAGCTCAAGAGA 59.481 57.895 0.32 0.00 0.00 3.10
1802 2990 0.107993 CGCCATCCAGCTCAAGAGAA 60.108 55.000 0.32 0.00 0.00 2.87
1803 2991 1.676916 CGCCATCCAGCTCAAGAGAAA 60.677 52.381 0.32 0.00 0.00 2.52
1804 2992 2.440409 GCCATCCAGCTCAAGAGAAAA 58.560 47.619 0.32 0.00 0.00 2.29
1805 2993 2.821969 GCCATCCAGCTCAAGAGAAAAA 59.178 45.455 0.32 0.00 0.00 1.94
1823 3011 2.355010 AAAGGATGCCATCTACCAGC 57.645 50.000 4.41 0.00 0.00 4.85
1824 3012 1.516110 AAGGATGCCATCTACCAGCT 58.484 50.000 4.41 0.00 0.00 4.24
1825 3013 1.516110 AGGATGCCATCTACCAGCTT 58.484 50.000 4.41 0.00 0.00 3.74
1826 3014 1.419387 AGGATGCCATCTACCAGCTTC 59.581 52.381 4.41 0.00 0.00 3.86
1827 3015 1.419387 GGATGCCATCTACCAGCTTCT 59.581 52.381 4.41 0.00 32.80 2.85
1828 3016 2.634940 GGATGCCATCTACCAGCTTCTA 59.365 50.000 4.41 0.00 32.80 2.10
1829 3017 3.556004 GGATGCCATCTACCAGCTTCTAC 60.556 52.174 4.41 0.00 32.80 2.59
1830 3018 2.752030 TGCCATCTACCAGCTTCTACT 58.248 47.619 0.00 0.00 0.00 2.57
1831 3019 3.107601 TGCCATCTACCAGCTTCTACTT 58.892 45.455 0.00 0.00 0.00 2.24
1832 3020 3.519510 TGCCATCTACCAGCTTCTACTTT 59.480 43.478 0.00 0.00 0.00 2.66
1833 3021 4.019321 TGCCATCTACCAGCTTCTACTTTT 60.019 41.667 0.00 0.00 0.00 2.27
1834 3022 4.333926 GCCATCTACCAGCTTCTACTTTTG 59.666 45.833 0.00 0.00 0.00 2.44
1835 3023 5.491982 CCATCTACCAGCTTCTACTTTTGT 58.508 41.667 0.00 0.00 0.00 2.83
1836 3024 5.352569 CCATCTACCAGCTTCTACTTTTGTG 59.647 44.000 0.00 0.00 0.00 3.33
1837 3025 5.546621 TCTACCAGCTTCTACTTTTGTGT 57.453 39.130 0.00 0.00 0.00 3.72
1838 3026 5.925509 TCTACCAGCTTCTACTTTTGTGTT 58.074 37.500 0.00 0.00 0.00 3.32
1839 3027 4.900635 ACCAGCTTCTACTTTTGTGTTG 57.099 40.909 0.00 0.00 0.00 3.33
1840 3028 4.270008 ACCAGCTTCTACTTTTGTGTTGT 58.730 39.130 0.00 0.00 0.00 3.32
1841 3029 5.433526 ACCAGCTTCTACTTTTGTGTTGTA 58.566 37.500 0.00 0.00 0.00 2.41
1842 3030 6.062095 ACCAGCTTCTACTTTTGTGTTGTAT 58.938 36.000 0.00 0.00 0.00 2.29
1843 3031 6.546034 ACCAGCTTCTACTTTTGTGTTGTATT 59.454 34.615 0.00 0.00 0.00 1.89
1844 3032 6.857964 CCAGCTTCTACTTTTGTGTTGTATTG 59.142 38.462 0.00 0.00 0.00 1.90
1845 3033 7.417612 CAGCTTCTACTTTTGTGTTGTATTGT 58.582 34.615 0.00 0.00 0.00 2.71
1846 3034 7.915397 CAGCTTCTACTTTTGTGTTGTATTGTT 59.085 33.333 0.00 0.00 0.00 2.83
1847 3035 7.915397 AGCTTCTACTTTTGTGTTGTATTGTTG 59.085 33.333 0.00 0.00 0.00 3.33
1848 3036 7.700656 GCTTCTACTTTTGTGTTGTATTGTTGT 59.299 33.333 0.00 0.00 0.00 3.32
1849 3037 8.903570 TTCTACTTTTGTGTTGTATTGTTGTG 57.096 30.769 0.00 0.00 0.00 3.33
1850 3038 8.270080 TCTACTTTTGTGTTGTATTGTTGTGA 57.730 30.769 0.00 0.00 0.00 3.58
1851 3039 8.394877 TCTACTTTTGTGTTGTATTGTTGTGAG 58.605 33.333 0.00 0.00 0.00 3.51
1852 3040 6.919721 ACTTTTGTGTTGTATTGTTGTGAGT 58.080 32.000 0.00 0.00 0.00 3.41
1853 3041 7.375053 ACTTTTGTGTTGTATTGTTGTGAGTT 58.625 30.769 0.00 0.00 0.00 3.01
1854 3042 8.516234 ACTTTTGTGTTGTATTGTTGTGAGTTA 58.484 29.630 0.00 0.00 0.00 2.24
1855 3043 8.903570 TTTTGTGTTGTATTGTTGTGAGTTAG 57.096 30.769 0.00 0.00 0.00 2.34
1856 3044 7.618502 TTGTGTTGTATTGTTGTGAGTTAGT 57.381 32.000 0.00 0.00 0.00 2.24
1857 3045 7.618502 TGTGTTGTATTGTTGTGAGTTAGTT 57.381 32.000 0.00 0.00 0.00 2.24
1858 3046 8.719560 TGTGTTGTATTGTTGTGAGTTAGTTA 57.280 30.769 0.00 0.00 0.00 2.24
1859 3047 9.163899 TGTGTTGTATTGTTGTGAGTTAGTTAA 57.836 29.630 0.00 0.00 0.00 2.01
2015 3203 5.121611 TCGTTTTGAGCACGATTATGACAAT 59.878 36.000 0.00 0.00 41.66 2.71
2039 3227 3.238497 CCGGTGGACAGGGTGACA 61.238 66.667 0.00 0.00 0.00 3.58
2445 3636 0.760567 AGTCTCAGAGCCACACACCA 60.761 55.000 0.00 0.00 0.00 4.17
2492 3683 1.924320 GCGTACTCCAGTCGTGCTCT 61.924 60.000 0.00 0.00 0.00 4.09
2546 3737 4.678743 GCCACCAACCCAGGGACC 62.679 72.222 14.54 0.00 0.00 4.46
2547 3738 2.858974 CCACCAACCCAGGGACCT 60.859 66.667 14.54 0.00 0.00 3.85
2548 3739 2.469765 CCACCAACCCAGGGACCTT 61.470 63.158 14.54 0.00 0.00 3.50
2549 3740 1.074951 CACCAACCCAGGGACCTTC 59.925 63.158 14.54 0.00 0.00 3.46
2550 3741 2.351276 CCAACCCAGGGACCTTCG 59.649 66.667 14.54 0.00 0.00 3.79
2551 3742 2.359975 CAACCCAGGGACCTTCGC 60.360 66.667 14.54 0.00 0.00 4.70
2552 3743 4.016706 AACCCAGGGACCTTCGCG 62.017 66.667 14.54 0.00 34.19 5.87
2559 3750 3.733960 GGACCTTCGCGCCCAAAC 61.734 66.667 0.00 0.00 0.00 2.93
2560 3751 3.733960 GACCTTCGCGCCCAAACC 61.734 66.667 0.00 0.00 0.00 3.27
2561 3752 4.572571 ACCTTCGCGCCCAAACCA 62.573 61.111 0.00 0.00 0.00 3.67
2562 3753 3.737172 CCTTCGCGCCCAAACCAG 61.737 66.667 0.00 0.00 0.00 4.00
2563 3754 4.404654 CTTCGCGCCCAAACCAGC 62.405 66.667 0.00 0.00 0.00 4.85
2568 3759 3.365265 CGCCCAAACCAGCCACTC 61.365 66.667 0.00 0.00 0.00 3.51
2569 3760 2.991540 GCCCAAACCAGCCACTCC 60.992 66.667 0.00 0.00 0.00 3.85
2570 3761 2.283173 CCCAAACCAGCCACTCCC 60.283 66.667 0.00 0.00 0.00 4.30
2571 3762 2.283173 CCAAACCAGCCACTCCCC 60.283 66.667 0.00 0.00 0.00 4.81
2572 3763 2.520458 CAAACCAGCCACTCCCCA 59.480 61.111 0.00 0.00 0.00 4.96
2573 3764 1.604593 CAAACCAGCCACTCCCCAG 60.605 63.158 0.00 0.00 0.00 4.45
2574 3765 3.513750 AAACCAGCCACTCCCCAGC 62.514 63.158 0.00 0.00 0.00 4.85
2577 3768 4.106925 CAGCCACTCCCCAGCCTC 62.107 72.222 0.00 0.00 0.00 4.70
2580 3771 3.775654 CCACTCCCCAGCCTCGTC 61.776 72.222 0.00 0.00 0.00 4.20
2581 3772 4.135153 CACTCCCCAGCCTCGTCG 62.135 72.222 0.00 0.00 0.00 5.12
2582 3773 4.680537 ACTCCCCAGCCTCGTCGT 62.681 66.667 0.00 0.00 0.00 4.34
2583 3774 4.135153 CTCCCCAGCCTCGTCGTG 62.135 72.222 0.00 0.00 0.00 4.35
2584 3775 4.988716 TCCCCAGCCTCGTCGTGT 62.989 66.667 0.00 0.00 0.00 4.49
2585 3776 4.436998 CCCCAGCCTCGTCGTGTC 62.437 72.222 0.00 0.00 0.00 3.67
2586 3777 4.778415 CCCAGCCTCGTCGTGTCG 62.778 72.222 0.00 0.00 0.00 4.35
2587 3778 3.733960 CCAGCCTCGTCGTGTCGA 61.734 66.667 0.00 0.00 38.19 4.20
2634 3880 4.467084 GGAATCGAGCCACCGCCA 62.467 66.667 2.43 0.00 34.57 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.622154 AGAGGAGAGAGACGGAGGGA 60.622 60.000 0.00 0.00 0.00 4.20
5 6 2.021457 GAAAGAGGAGAGAGACGGAGG 58.979 57.143 0.00 0.00 0.00 4.30
6 7 2.422127 GTGAAAGAGGAGAGAGACGGAG 59.578 54.545 0.00 0.00 0.00 4.63
7 8 2.438411 GTGAAAGAGGAGAGAGACGGA 58.562 52.381 0.00 0.00 0.00 4.69
10 11 2.438411 TCGGTGAAAGAGGAGAGAGAC 58.562 52.381 0.00 0.00 0.00 3.36
24 25 0.320374 AATGTTCGCTCCTTCGGTGA 59.680 50.000 0.00 0.00 0.00 4.02
26 27 1.535462 CAAAATGTTCGCTCCTTCGGT 59.465 47.619 0.00 0.00 0.00 4.69
27 28 1.535462 ACAAAATGTTCGCTCCTTCGG 59.465 47.619 0.00 0.00 0.00 4.30
28 29 2.223144 TCACAAAATGTTCGCTCCTTCG 59.777 45.455 0.00 0.00 0.00 3.79
38 40 4.066490 TCCGACGGTATTCACAAAATGTT 58.934 39.130 14.79 0.00 0.00 2.71
45 47 1.187974 ACCATCCGACGGTATTCACA 58.812 50.000 14.79 0.00 34.02 3.58
46 48 1.931172 CAACCATCCGACGGTATTCAC 59.069 52.381 14.79 0.00 34.99 3.18
47 49 1.134640 CCAACCATCCGACGGTATTCA 60.135 52.381 14.79 0.00 34.99 2.57
50 52 1.145377 GCCAACCATCCGACGGTAT 59.855 57.895 14.79 3.35 34.99 2.73
51 53 0.683828 TAGCCAACCATCCGACGGTA 60.684 55.000 14.79 0.72 34.99 4.02
52 54 1.985662 TAGCCAACCATCCGACGGT 60.986 57.895 14.79 0.00 38.85 4.83
53 55 1.520787 GTAGCCAACCATCCGACGG 60.521 63.158 7.84 7.84 0.00 4.79
54 56 4.104143 GTAGCCAACCATCCGACG 57.896 61.111 0.00 0.00 0.00 5.12
69 71 3.244735 TGCTTGTAGGCAGTGAAATGGTA 60.245 43.478 0.00 0.00 37.29 3.25
70 72 2.162681 GCTTGTAGGCAGTGAAATGGT 58.837 47.619 0.00 0.00 0.00 3.55
82 84 2.813908 GGGCGACGTGCTTGTAGG 60.814 66.667 0.00 0.00 45.43 3.18
98 100 5.362556 AAGATATCATCAAATTTCCGCGG 57.637 39.130 22.12 22.12 0.00 6.46
99 101 7.684062 AAAAAGATATCATCAAATTTCCGCG 57.316 32.000 5.32 0.00 0.00 6.46
120 122 5.743026 TCACTAACGCAGATCAACAAAAA 57.257 34.783 0.00 0.00 0.00 1.94
121 123 5.688823 CATCACTAACGCAGATCAACAAAA 58.311 37.500 0.00 0.00 0.00 2.44
124 126 2.672874 GCATCACTAACGCAGATCAACA 59.327 45.455 0.00 0.00 0.00 3.33
126 128 2.279741 GGCATCACTAACGCAGATCAA 58.720 47.619 0.00 0.00 0.00 2.57
127 129 1.473257 GGGCATCACTAACGCAGATCA 60.473 52.381 0.00 0.00 0.00 2.92
132 134 1.276705 TGTAAGGGCATCACTAACGCA 59.723 47.619 0.00 0.00 0.00 5.24
135 137 3.439129 GGTGTTGTAAGGGCATCACTAAC 59.561 47.826 0.00 0.00 38.46 2.34
164 166 4.007644 CGGCCCTCTGCTGTCACA 62.008 66.667 0.00 0.00 41.73 3.58
180 182 1.026718 AAAGATTCCCTTGAGCCGCG 61.027 55.000 0.00 0.00 34.79 6.46
181 183 0.735471 GAAAGATTCCCTTGAGCCGC 59.265 55.000 0.00 0.00 34.79 6.53
184 186 5.472820 CCATATGAGAAAGATTCCCTTGAGC 59.527 44.000 3.65 0.00 34.79 4.26
186 188 6.409695 GGACCATATGAGAAAGATTCCCTTGA 60.410 42.308 3.65 0.00 34.79 3.02
209 211 3.634910 TGCGTATAGTACTGCTTGATGGA 59.365 43.478 5.39 0.00 32.30 3.41
215 217 3.021695 TCTGGTGCGTATAGTACTGCTT 58.978 45.455 5.39 0.00 35.67 3.91
244 248 5.340932 CGCAACATAATACGCTCTCTCTAAG 59.659 44.000 0.00 0.00 0.00 2.18
254 258 5.336990 GTGAATGAATCGCAACATAATACGC 59.663 40.000 0.00 0.00 38.47 4.42
255 259 6.418141 TGTGAATGAATCGCAACATAATACG 58.582 36.000 0.00 0.00 45.27 3.06
266 270 7.695540 AATGCACGAGATGTGAATGAATCGC 62.696 44.000 0.00 0.00 46.78 4.58
267 271 4.260497 AATGCACGAGATGTGAATGAATCG 60.260 41.667 0.00 0.00 46.78 3.34
268 272 4.968181 CAATGCACGAGATGTGAATGAATC 59.032 41.667 0.00 0.00 46.78 2.52
269 273 4.397103 ACAATGCACGAGATGTGAATGAAT 59.603 37.500 0.00 0.00 46.78 2.57
270 274 3.752747 ACAATGCACGAGATGTGAATGAA 59.247 39.130 0.00 0.00 46.78 2.57
294 298 0.107263 ATGCATGCATGGTACGGTGA 60.107 50.000 31.74 0.00 35.03 4.02
297 301 1.159713 ACGATGCATGCATGGTACGG 61.160 55.000 37.28 21.10 42.16 4.02
299 303 2.476619 GTCTACGATGCATGCATGGTAC 59.523 50.000 36.88 30.36 42.16 3.34
300 304 2.754472 GTCTACGATGCATGCATGGTA 58.246 47.619 37.25 37.25 42.16 3.25
301 305 1.586422 GTCTACGATGCATGCATGGT 58.414 50.000 38.67 38.67 45.05 3.55
302 306 0.509929 CGTCTACGATGCATGCATGG 59.490 55.000 36.73 34.72 43.02 3.66
320 327 2.355363 TGGTTTCGTGACTCGGCG 60.355 61.111 0.00 0.00 40.32 6.46
323 330 0.242825 TAGGCTGGTTTCGTGACTCG 59.757 55.000 0.00 0.00 41.41 4.18
405 412 5.982890 AAATAGGAATGTGTGGTTCAAGG 57.017 39.130 0.00 0.00 0.00 3.61
457 467 2.927580 CGTACGACTGGCTGGGTGT 61.928 63.158 10.44 0.00 0.00 4.16
459 469 4.065281 GCGTACGACTGGCTGGGT 62.065 66.667 21.65 0.00 0.00 4.51
460 470 4.063967 TGCGTACGACTGGCTGGG 62.064 66.667 21.65 0.00 0.00 4.45
461 471 2.809601 GTGCGTACGACTGGCTGG 60.810 66.667 21.65 0.00 0.00 4.85
482 502 0.339510 GGTACTAGGGTGGTGGGGTA 59.660 60.000 0.00 0.00 0.00 3.69
483 503 1.081648 GGTACTAGGGTGGTGGGGT 59.918 63.158 0.00 0.00 0.00 4.95
484 504 0.690077 GAGGTACTAGGGTGGTGGGG 60.690 65.000 0.00 0.00 41.55 4.96
485 505 1.041447 CGAGGTACTAGGGTGGTGGG 61.041 65.000 0.00 0.00 41.55 4.61
501 529 1.153489 CCAGCATGAGTGGTCCGAG 60.153 63.158 0.00 0.00 39.69 4.63
507 535 1.683385 TCGTAGATCCAGCATGAGTGG 59.317 52.381 8.00 8.00 39.69 4.00
541 569 3.123804 ACGAAATCATGAGCGTGGATAC 58.876 45.455 16.90 0.00 35.44 2.24
542 570 3.452755 ACGAAATCATGAGCGTGGATA 57.547 42.857 16.90 0.00 35.44 2.59
543 571 2.315925 ACGAAATCATGAGCGTGGAT 57.684 45.000 16.90 0.00 35.44 3.41
544 572 2.165641 ACTACGAAATCATGAGCGTGGA 59.834 45.455 26.55 12.13 38.37 4.02
546 574 3.179048 TCACTACGAAATCATGAGCGTG 58.821 45.455 23.12 17.07 37.56 5.34
547 575 3.503827 TCACTACGAAATCATGAGCGT 57.496 42.857 20.04 20.04 40.42 5.07
548 576 4.504097 TGAATCACTACGAAATCATGAGCG 59.496 41.667 0.09 7.67 0.00 5.03
566 622 4.731773 GCACATCCGTTTTCCTGATGAATC 60.732 45.833 5.79 0.00 38.49 2.52
576 632 2.793278 ACTTTGGCACATCCGTTTTC 57.207 45.000 0.00 0.00 39.30 2.29
582 638 4.021544 TCCAATGTTTACTTTGGCACATCC 60.022 41.667 17.98 0.00 45.50 3.51
584 640 5.743636 ATCCAATGTTTACTTTGGCACAT 57.256 34.783 17.98 7.95 45.50 3.21
585 641 6.435591 TGATATCCAATGTTTACTTTGGCACA 59.564 34.615 17.98 13.02 45.50 4.57
595 651 3.146066 GCCGGCTGATATCCAATGTTTA 58.854 45.455 22.15 0.00 0.00 2.01
598 654 0.250901 GGCCGGCTGATATCCAATGT 60.251 55.000 28.56 0.00 0.00 2.71
599 655 1.300971 CGGCCGGCTGATATCCAATG 61.301 60.000 32.31 0.00 0.00 2.82
600 656 1.003355 CGGCCGGCTGATATCCAAT 60.003 57.895 32.31 0.00 0.00 3.16
601 657 2.425592 CGGCCGGCTGATATCCAA 59.574 61.111 32.31 0.00 0.00 3.53
602 658 3.625897 CCGGCCGGCTGATATCCA 61.626 66.667 37.00 0.00 0.00 3.41
603 659 3.178540 AACCGGCCGGCTGATATCC 62.179 63.158 43.58 12.00 39.32 2.59
604 660 1.961277 CAACCGGCCGGCTGATATC 60.961 63.158 43.58 12.82 39.32 1.63
605 661 2.111043 CAACCGGCCGGCTGATAT 59.889 61.111 43.58 21.49 39.32 1.63
632 1527 4.547367 GATCAACGGGCGGGGGAG 62.547 72.222 0.00 0.00 0.00 4.30
642 1537 0.030908 GGTAGGAGAGCCGATCAACG 59.969 60.000 0.00 0.00 39.96 4.10
644 1783 1.693627 GAGGTAGGAGAGCCGATCAA 58.306 55.000 0.00 0.00 39.96 2.57
647 1786 1.899534 GCGAGGTAGGAGAGCCGAT 60.900 63.158 0.00 0.00 39.96 4.18
649 1788 3.597728 GGCGAGGTAGGAGAGCCG 61.598 72.222 0.00 0.00 38.28 5.52
651 1790 0.825840 ATGAGGCGAGGTAGGAGAGC 60.826 60.000 0.00 0.00 0.00 4.09
653 1792 2.584236 GTAATGAGGCGAGGTAGGAGA 58.416 52.381 0.00 0.00 0.00 3.71
659 1798 1.466856 TGTACGTAATGAGGCGAGGT 58.533 50.000 0.00 0.00 0.00 3.85
665 1804 7.218145 GTACATCTGTTTGTACGTAATGAGG 57.782 40.000 0.00 0.00 41.68 3.86
674 1813 2.091588 CACCGCGTACATCTGTTTGTAC 59.908 50.000 4.92 11.18 45.48 2.90
675 1814 2.030096 TCACCGCGTACATCTGTTTGTA 60.030 45.455 4.92 0.00 0.00 2.41
676 1815 1.144969 CACCGCGTACATCTGTTTGT 58.855 50.000 4.92 0.00 0.00 2.83
677 1816 1.424403 TCACCGCGTACATCTGTTTG 58.576 50.000 4.92 0.00 0.00 2.93
678 1817 2.380084 ATCACCGCGTACATCTGTTT 57.620 45.000 4.92 0.00 0.00 2.83
679 1818 2.380084 AATCACCGCGTACATCTGTT 57.620 45.000 4.92 0.00 0.00 3.16
680 1819 2.268298 GAAATCACCGCGTACATCTGT 58.732 47.619 4.92 0.00 0.00 3.41
681 1820 2.267426 TGAAATCACCGCGTACATCTG 58.733 47.619 4.92 0.00 0.00 2.90
682 1821 2.665649 TGAAATCACCGCGTACATCT 57.334 45.000 4.92 0.00 0.00 2.90
683 1822 4.049186 ACTATGAAATCACCGCGTACATC 58.951 43.478 4.92 0.00 0.00 3.06
684 1823 4.054780 ACTATGAAATCACCGCGTACAT 57.945 40.909 4.92 2.60 0.00 2.29
685 1824 3.513680 ACTATGAAATCACCGCGTACA 57.486 42.857 4.92 0.00 0.00 2.90
686 1825 7.807687 ATTATACTATGAAATCACCGCGTAC 57.192 36.000 4.92 0.00 0.00 3.67
687 1826 8.083462 TGAATTATACTATGAAATCACCGCGTA 58.917 33.333 4.92 0.00 0.00 4.42
688 1827 6.926826 TGAATTATACTATGAAATCACCGCGT 59.073 34.615 4.92 0.00 0.00 6.01
689 1828 7.116376 ACTGAATTATACTATGAAATCACCGCG 59.884 37.037 0.00 0.00 0.00 6.46
707 1846 6.833041 TGTGACTTGGGACTTTACTGAATTA 58.167 36.000 0.00 0.00 0.00 1.40
708 1847 5.690865 TGTGACTTGGGACTTTACTGAATT 58.309 37.500 0.00 0.00 0.00 2.17
710 1849 4.764050 TGTGACTTGGGACTTTACTGAA 57.236 40.909 0.00 0.00 0.00 3.02
716 1861 2.363306 TGCATGTGACTTGGGACTTT 57.637 45.000 0.53 0.00 0.00 2.66
720 1865 2.064434 TGTTTGCATGTGACTTGGGA 57.936 45.000 0.53 0.00 0.00 4.37
736 1881 3.009026 TCTACGTCATTGCATGCATGTT 58.991 40.909 26.79 6.86 0.00 2.71
763 1911 0.604578 TTGTGAGTAGTACCGTGCCC 59.395 55.000 0.00 0.00 0.00 5.36
768 1916 3.376546 GTCCTAGGTTGTGAGTAGTACCG 59.623 52.174 9.08 0.00 35.80 4.02
769 1917 4.338879 TGTCCTAGGTTGTGAGTAGTACC 58.661 47.826 9.08 0.00 0.00 3.34
770 1918 5.008980 ACTGTCCTAGGTTGTGAGTAGTAC 58.991 45.833 9.08 0.00 0.00 2.73
771 1919 5.008331 CACTGTCCTAGGTTGTGAGTAGTA 58.992 45.833 19.34 0.00 0.00 1.82
772 1920 3.827302 CACTGTCCTAGGTTGTGAGTAGT 59.173 47.826 19.34 7.87 0.00 2.73
773 1921 3.193691 CCACTGTCCTAGGTTGTGAGTAG 59.806 52.174 23.11 10.10 0.00 2.57
774 1922 3.162666 CCACTGTCCTAGGTTGTGAGTA 58.837 50.000 23.11 0.00 0.00 2.59
775 1923 1.971357 CCACTGTCCTAGGTTGTGAGT 59.029 52.381 23.11 11.76 0.00 3.41
776 1924 1.338200 GCCACTGTCCTAGGTTGTGAG 60.338 57.143 23.11 16.84 0.00 3.51
777 1925 0.685097 GCCACTGTCCTAGGTTGTGA 59.315 55.000 23.11 0.00 0.00 3.58
799 1947 1.891919 GGCAGTTGTCACCAGCGAA 60.892 57.895 0.00 0.00 0.00 4.70
800 1948 2.280797 GGCAGTTGTCACCAGCGA 60.281 61.111 0.00 0.00 0.00 4.93
809 1957 0.311790 CTTGCGACAATGGCAGTTGT 59.688 50.000 12.87 12.87 44.53 3.32
816 1964 3.451894 GGGGCCTTGCGACAATGG 61.452 66.667 0.84 0.00 0.00 3.16
874 2022 1.071698 GTGCGTGCGTATTTATCGTCC 60.072 52.381 0.00 0.00 0.00 4.79
875 2023 1.584761 TGTGCGTGCGTATTTATCGTC 59.415 47.619 0.00 0.00 0.00 4.20
876 2024 1.322338 GTGTGCGTGCGTATTTATCGT 59.678 47.619 0.00 0.00 0.00 3.73
903 2051 3.027412 ACTTGTGTGTGTGAGAGAGAGT 58.973 45.455 0.00 0.00 0.00 3.24
909 2057 0.104120 CCGGACTTGTGTGTGTGAGA 59.896 55.000 0.00 0.00 0.00 3.27
911 2059 1.522806 GCCGGACTTGTGTGTGTGA 60.523 57.895 5.05 0.00 0.00 3.58
915 2063 2.029073 CTCGCCGGACTTGTGTGT 59.971 61.111 5.05 0.00 0.00 3.72
949 2104 1.664321 CCTTGTAGGGGACGACGGAG 61.664 65.000 0.00 0.00 39.02 4.63
965 2120 1.547901 GGCTTCTTGGGTTGTAGCCTT 60.548 52.381 0.00 0.00 46.14 4.35
966 2121 0.038310 GGCTTCTTGGGTTGTAGCCT 59.962 55.000 0.00 0.00 46.14 4.58
967 2122 2.568003 GGCTTCTTGGGTTGTAGCC 58.432 57.895 0.00 0.00 43.96 3.93
968 2123 1.911057 AAGGCTTCTTGGGTTGTAGC 58.089 50.000 0.00 0.00 0.00 3.58
978 2133 1.741770 CGGCGCTGTAAGGCTTCTT 60.742 57.895 8.45 0.00 31.88 2.52
1011 2166 3.607370 GAAGAGGCCGGTGGACCAC 62.607 68.421 16.86 16.86 35.14 4.16
1039 2194 2.791396 TTACAGCCGCTGACGTCGTC 62.791 60.000 27.12 18.51 37.70 4.20
1040 2195 2.797866 CTTACAGCCGCTGACGTCGT 62.798 60.000 27.12 0.00 37.70 4.34
1041 2196 2.126618 TTACAGCCGCTGACGTCG 60.127 61.111 27.12 7.05 37.70 5.12
1042 2197 2.445438 GCTTACAGCCGCTGACGTC 61.445 63.158 27.12 9.11 34.48 4.34
1043 2198 2.432628 GCTTACAGCCGCTGACGT 60.433 61.111 27.12 7.30 34.48 4.34
1044 2199 0.457853 TAAGCTTACAGCCGCTGACG 60.458 55.000 27.12 14.25 43.77 4.35
1045 2200 1.281899 CTAAGCTTACAGCCGCTGAC 58.718 55.000 27.12 12.43 43.77 3.51
1058 2213 1.275421 GGGAGGGAGTTGGCTAAGCT 61.275 60.000 0.00 0.00 0.00 3.74
1062 2217 0.398664 GCTAGGGAGGGAGTTGGCTA 60.399 60.000 0.00 0.00 0.00 3.93
1070 2225 2.585900 TGTTTCTCTAGCTAGGGAGGGA 59.414 50.000 22.29 10.74 33.66 4.20
1071 2226 2.696187 GTGTTTCTCTAGCTAGGGAGGG 59.304 54.545 22.29 0.00 33.66 4.30
1072 2227 3.383185 CAGTGTTTCTCTAGCTAGGGAGG 59.617 52.174 22.29 9.82 33.66 4.30
1073 2228 3.383185 CCAGTGTTTCTCTAGCTAGGGAG 59.617 52.174 22.29 12.85 33.66 4.30
1089 2244 8.245195 ACCAAAAGTATACATTTTTCCAGTGT 57.755 30.769 5.50 0.00 0.00 3.55
1101 2256 8.927675 AGTTCATAACCAACCAAAAGTATACA 57.072 30.769 5.50 0.00 0.00 2.29
1102 2257 9.620660 CAAGTTCATAACCAACCAAAAGTATAC 57.379 33.333 0.00 0.00 0.00 1.47
1196 2356 0.824595 TGAGGTTCCCTTGTCGACGA 60.825 55.000 11.62 8.40 31.76 4.20
1205 2365 2.625639 AGAACTCACATGAGGTTCCCT 58.374 47.619 13.33 0.00 43.22 4.20
1230 2397 6.985645 TGCACAAAATTTACAGCAAGAAGAAT 59.014 30.769 8.38 0.00 0.00 2.40
1233 2400 6.586868 TTGCACAAAATTTACAGCAAGAAG 57.413 33.333 15.71 0.00 37.10 2.85
1236 2403 9.157259 GTTAATTTGCACAAAATTTACAGCAAG 57.843 29.630 17.70 0.00 44.41 4.01
1238 2405 7.010552 ACGTTAATTTGCACAAAATTTACAGCA 59.989 29.630 10.43 7.11 44.41 4.41
1239 2406 7.341446 ACGTTAATTTGCACAAAATTTACAGC 58.659 30.769 10.43 0.00 44.41 4.40
1241 2408 7.220300 ACGACGTTAATTTGCACAAAATTTACA 59.780 29.630 10.43 0.00 44.41 2.41
1246 2413 4.377445 CGACGACGTTAATTTGCACAAAAT 59.623 37.500 0.13 0.00 36.03 1.82
1251 2418 1.192980 ACCGACGACGTTAATTTGCAC 59.807 47.619 0.13 0.00 37.88 4.57
1253 2420 1.523600 CGACCGACGACGTTAATTTGC 60.524 52.381 0.13 0.00 45.77 3.68
1254 2421 1.978097 TCGACCGACGACGTTAATTTG 59.022 47.619 0.13 0.00 46.45 2.32
1255 2422 2.330231 TCGACCGACGACGTTAATTT 57.670 45.000 0.13 0.00 46.45 1.82
1265 2432 3.176708 AGTTTACATCATTCGACCGACG 58.823 45.455 0.00 0.00 44.09 5.12
1266 2433 4.387862 ACAAGTTTACATCATTCGACCGAC 59.612 41.667 0.00 0.00 0.00 4.79
1267 2434 4.387559 CACAAGTTTACATCATTCGACCGA 59.612 41.667 0.00 0.00 0.00 4.69
1268 2435 4.637968 CACAAGTTTACATCATTCGACCG 58.362 43.478 0.00 0.00 0.00 4.79
1269 2436 4.154195 AGCACAAGTTTACATCATTCGACC 59.846 41.667 0.00 0.00 0.00 4.79
1270 2437 5.082059 CAGCACAAGTTTACATCATTCGAC 58.918 41.667 0.00 0.00 0.00 4.20
1271 2438 4.994217 TCAGCACAAGTTTACATCATTCGA 59.006 37.500 0.00 0.00 0.00 3.71
1272 2439 5.281693 TCAGCACAAGTTTACATCATTCG 57.718 39.130 0.00 0.00 0.00 3.34
1273 2440 5.961843 CGATCAGCACAAGTTTACATCATTC 59.038 40.000 0.00 0.00 0.00 2.67
1285 2452 1.201704 CGTTCGTTCGATCAGCACAAG 60.202 52.381 0.00 0.00 0.00 3.16
1288 2455 1.057636 TTCGTTCGTTCGATCAGCAC 58.942 50.000 5.70 0.00 39.57 4.40
1292 2459 2.581637 CTGAGTTCGTTCGTTCGATCA 58.418 47.619 12.45 9.99 39.57 2.92
1296 2463 1.129326 AAGCTGAGTTCGTTCGTTCG 58.871 50.000 0.00 0.00 0.00 3.95
1326 2508 3.387091 AGCATGTACGCCGTCCCA 61.387 61.111 0.00 0.00 0.00 4.37
1371 2553 2.503061 CGGTAGCAGCAGGAGCAT 59.497 61.111 0.00 0.00 45.49 3.79
1450 2632 2.347490 GCAGGGGTCGCAGAAGAA 59.653 61.111 0.00 0.00 39.69 2.52
1509 2691 1.485124 ACATACCGAGGCTCATGTCA 58.515 50.000 15.95 1.43 0.00 3.58
1525 2707 5.488341 GAAGGATTGTGTAGTGTGGTACAT 58.512 41.667 0.00 0.00 44.52 2.29
1526 2708 4.262721 GGAAGGATTGTGTAGTGTGGTACA 60.263 45.833 0.00 0.00 0.00 2.90
1531 2719 4.821805 ACAAAGGAAGGATTGTGTAGTGTG 59.178 41.667 0.00 0.00 38.29 3.82
1540 2728 2.800250 AGGCTGACAAAGGAAGGATTG 58.200 47.619 0.00 0.00 0.00 2.67
1541 2729 3.160269 CAAGGCTGACAAAGGAAGGATT 58.840 45.455 0.00 0.00 0.00 3.01
1542 2730 2.800250 CAAGGCTGACAAAGGAAGGAT 58.200 47.619 0.00 0.00 0.00 3.24
1543 2731 1.819305 GCAAGGCTGACAAAGGAAGGA 60.819 52.381 0.00 0.00 0.00 3.36
1544 2732 0.600057 GCAAGGCTGACAAAGGAAGG 59.400 55.000 0.00 0.00 0.00 3.46
1545 2733 1.538950 GAGCAAGGCTGACAAAGGAAG 59.461 52.381 0.00 0.00 39.88 3.46
1547 2735 0.473755 TGAGCAAGGCTGACAAAGGA 59.526 50.000 0.00 0.00 39.88 3.36
1548 2736 1.542492 ATGAGCAAGGCTGACAAAGG 58.458 50.000 0.00 0.00 39.88 3.11
1549 2737 2.925306 GCAATGAGCAAGGCTGACAAAG 60.925 50.000 0.00 0.00 44.79 2.77
1550 2738 1.000060 GCAATGAGCAAGGCTGACAAA 60.000 47.619 0.00 0.00 44.79 2.83
1584 2772 1.729131 CGCAAACGGCAATGGTGAC 60.729 57.895 0.00 0.00 45.17 3.67
1603 2791 6.292596 GCCGCAATTTAAAGTCATCAACAAAA 60.293 34.615 0.00 0.00 0.00 2.44
1607 2795 3.300590 CGCCGCAATTTAAAGTCATCAAC 59.699 43.478 0.00 0.00 0.00 3.18
1615 2803 1.696988 AAGTGCGCCGCAATTTAAAG 58.303 45.000 19.86 0.00 44.39 1.85
1621 2809 4.101790 CCGAAAGTGCGCCGCAAT 62.102 61.111 15.84 10.94 41.47 3.56
1628 2816 3.121030 CCCAGCTCCGAAAGTGCG 61.121 66.667 0.00 0.00 34.58 5.34
1648 2836 3.850273 ACTTAAAGCTAATCACGACGACG 59.150 43.478 5.58 5.58 45.75 5.12
1654 2842 6.088085 CAGCCAAAAACTTAAAGCTAATCACG 59.912 38.462 0.00 0.00 0.00 4.35
1655 2843 6.128822 GCAGCCAAAAACTTAAAGCTAATCAC 60.129 38.462 0.00 0.00 0.00 3.06
1656 2844 5.925969 GCAGCCAAAAACTTAAAGCTAATCA 59.074 36.000 0.00 0.00 0.00 2.57
1660 2848 4.582656 TGAGCAGCCAAAAACTTAAAGCTA 59.417 37.500 0.00 0.00 0.00 3.32
1667 2855 2.159327 GCATGAGCAGCCAAAAACTT 57.841 45.000 0.00 0.00 41.58 2.66
1732 2920 1.599047 GTAAGCCTGAGGAGCAGCA 59.401 57.895 0.65 0.00 43.50 4.41
1738 2926 2.365105 CCCGGGTAAGCCTGAGGA 60.365 66.667 14.18 0.00 43.97 3.71
1802 2990 3.026694 GCTGGTAGATGGCATCCTTTTT 58.973 45.455 23.33 7.61 0.00 1.94
1803 2991 2.243221 AGCTGGTAGATGGCATCCTTTT 59.757 45.455 23.33 7.99 0.00 2.27
1804 2992 1.849039 AGCTGGTAGATGGCATCCTTT 59.151 47.619 23.33 8.36 0.00 3.11
1805 2993 1.516110 AGCTGGTAGATGGCATCCTT 58.484 50.000 23.33 9.10 0.00 3.36
1806 2994 1.419387 GAAGCTGGTAGATGGCATCCT 59.581 52.381 23.33 13.21 0.00 3.24
1807 2995 1.419387 AGAAGCTGGTAGATGGCATCC 59.581 52.381 23.33 10.22 0.00 3.51
1808 2996 2.926778 AGAAGCTGGTAGATGGCATC 57.073 50.000 19.78 19.78 0.00 3.91
1809 2997 3.312890 AGTAGAAGCTGGTAGATGGCAT 58.687 45.455 0.00 0.00 0.00 4.40
1810 2998 2.752030 AGTAGAAGCTGGTAGATGGCA 58.248 47.619 0.00 0.00 0.00 4.92
1811 2999 3.828875 AAGTAGAAGCTGGTAGATGGC 57.171 47.619 0.00 0.00 0.00 4.40
1812 3000 5.352569 CACAAAAGTAGAAGCTGGTAGATGG 59.647 44.000 0.00 0.00 0.00 3.51
1813 3001 5.934625 ACACAAAAGTAGAAGCTGGTAGATG 59.065 40.000 0.00 0.00 0.00 2.90
1814 3002 6.115448 ACACAAAAGTAGAAGCTGGTAGAT 57.885 37.500 0.00 0.00 0.00 1.98
1815 3003 5.546621 ACACAAAAGTAGAAGCTGGTAGA 57.453 39.130 0.00 0.00 0.00 2.59
1816 3004 5.527582 ACAACACAAAAGTAGAAGCTGGTAG 59.472 40.000 0.00 0.00 0.00 3.18
1817 3005 5.433526 ACAACACAAAAGTAGAAGCTGGTA 58.566 37.500 0.00 0.00 0.00 3.25
1818 3006 4.270008 ACAACACAAAAGTAGAAGCTGGT 58.730 39.130 0.00 0.00 0.00 4.00
1819 3007 4.900635 ACAACACAAAAGTAGAAGCTGG 57.099 40.909 0.00 0.00 0.00 4.85
1820 3008 7.417612 ACAATACAACACAAAAGTAGAAGCTG 58.582 34.615 0.00 0.00 0.00 4.24
1821 3009 7.568199 ACAATACAACACAAAAGTAGAAGCT 57.432 32.000 0.00 0.00 0.00 3.74
1822 3010 7.700656 ACAACAATACAACACAAAAGTAGAAGC 59.299 33.333 0.00 0.00 0.00 3.86
1823 3011 9.009327 CACAACAATACAACACAAAAGTAGAAG 57.991 33.333 0.00 0.00 0.00 2.85
1824 3012 8.731605 TCACAACAATACAACACAAAAGTAGAA 58.268 29.630 0.00 0.00 0.00 2.10
1825 3013 8.270080 TCACAACAATACAACACAAAAGTAGA 57.730 30.769 0.00 0.00 0.00 2.59
1826 3014 8.181573 ACTCACAACAATACAACACAAAAGTAG 58.818 33.333 0.00 0.00 0.00 2.57
1827 3015 8.046294 ACTCACAACAATACAACACAAAAGTA 57.954 30.769 0.00 0.00 0.00 2.24
1828 3016 6.919721 ACTCACAACAATACAACACAAAAGT 58.080 32.000 0.00 0.00 0.00 2.66
1829 3017 7.810766 AACTCACAACAATACAACACAAAAG 57.189 32.000 0.00 0.00 0.00 2.27
1830 3018 8.516234 ACTAACTCACAACAATACAACACAAAA 58.484 29.630 0.00 0.00 0.00 2.44
1831 3019 8.046294 ACTAACTCACAACAATACAACACAAA 57.954 30.769 0.00 0.00 0.00 2.83
1832 3020 7.618502 ACTAACTCACAACAATACAACACAA 57.381 32.000 0.00 0.00 0.00 3.33
1833 3021 7.618502 AACTAACTCACAACAATACAACACA 57.381 32.000 0.00 0.00 0.00 3.72
1841 3029 9.131791 ACTCCAAATTAACTAACTCACAACAAT 57.868 29.630 0.00 0.00 0.00 2.71
1842 3030 8.402472 CACTCCAAATTAACTAACTCACAACAA 58.598 33.333 0.00 0.00 0.00 2.83
1843 3031 7.771361 TCACTCCAAATTAACTAACTCACAACA 59.229 33.333 0.00 0.00 0.00 3.33
1844 3032 8.149973 TCACTCCAAATTAACTAACTCACAAC 57.850 34.615 0.00 0.00 0.00 3.32
1845 3033 8.740123 TTCACTCCAAATTAACTAACTCACAA 57.260 30.769 0.00 0.00 0.00 3.33
1846 3034 8.918202 ATTCACTCCAAATTAACTAACTCACA 57.082 30.769 0.00 0.00 0.00 3.58
1858 3046 9.696917 GATGTTTTCTGTAATTCACTCCAAATT 57.303 29.630 0.00 0.00 0.00 1.82
1859 3047 8.023128 CGATGTTTTCTGTAATTCACTCCAAAT 58.977 33.333 0.00 0.00 0.00 2.32
1860 3048 7.227711 TCGATGTTTTCTGTAATTCACTCCAAA 59.772 33.333 0.00 0.00 0.00 3.28
1873 3061 4.320494 GCCTTCAATGTCGATGTTTTCTGT 60.320 41.667 0.00 0.00 0.00 3.41
2039 3227 3.200605 TGTGATCTGTTATGTCCTGCCAT 59.799 43.478 0.00 0.00 0.00 4.40
2426 3617 0.760567 TGGTGTGTGGCTCTGAGACT 60.761 55.000 12.54 0.00 0.00 3.24
2542 3733 3.733960 GTTTGGGCGCGAAGGTCC 61.734 66.667 12.10 0.00 0.00 4.46
2543 3734 3.733960 GGTTTGGGCGCGAAGGTC 61.734 66.667 12.10 0.00 0.00 3.85
2544 3735 4.572571 TGGTTTGGGCGCGAAGGT 62.573 61.111 12.10 0.00 0.00 3.50
2545 3736 3.737172 CTGGTTTGGGCGCGAAGG 61.737 66.667 12.10 0.00 0.00 3.46
2546 3737 4.404654 GCTGGTTTGGGCGCGAAG 62.405 66.667 12.10 0.00 0.00 3.79
2551 3742 3.365265 GAGTGGCTGGTTTGGGCG 61.365 66.667 0.00 0.00 0.00 6.13
2552 3743 2.991540 GGAGTGGCTGGTTTGGGC 60.992 66.667 0.00 0.00 0.00 5.36
2553 3744 2.283173 GGGAGTGGCTGGTTTGGG 60.283 66.667 0.00 0.00 0.00 4.12
2554 3745 2.283173 GGGGAGTGGCTGGTTTGG 60.283 66.667 0.00 0.00 0.00 3.28
2555 3746 1.604593 CTGGGGAGTGGCTGGTTTG 60.605 63.158 0.00 0.00 0.00 2.93
2556 3747 2.846532 CTGGGGAGTGGCTGGTTT 59.153 61.111 0.00 0.00 0.00 3.27
2557 3748 3.971702 GCTGGGGAGTGGCTGGTT 61.972 66.667 0.00 0.00 0.00 3.67
2560 3751 4.106925 GAGGCTGGGGAGTGGCTG 62.107 72.222 0.00 0.00 0.00 4.85
2563 3754 3.775654 GACGAGGCTGGGGAGTGG 61.776 72.222 0.51 0.00 0.00 4.00
2564 3755 4.135153 CGACGAGGCTGGGGAGTG 62.135 72.222 0.51 0.00 0.00 3.51
2565 3756 4.680537 ACGACGAGGCTGGGGAGT 62.681 66.667 0.00 0.00 0.00 3.85
2566 3757 4.135153 CACGACGAGGCTGGGGAG 62.135 72.222 0.00 0.00 0.00 4.30
2567 3758 4.988716 ACACGACGAGGCTGGGGA 62.989 66.667 0.00 0.00 0.00 4.81
2568 3759 4.436998 GACACGACGAGGCTGGGG 62.437 72.222 0.00 0.00 0.00 4.96
2569 3760 4.778415 CGACACGACGAGGCTGGG 62.778 72.222 0.00 0.00 35.09 4.45
2570 3761 3.733960 TCGACACGACGAGGCTGG 61.734 66.667 0.00 0.00 37.37 4.85
2571 3762 2.502080 GTCGACACGACGAGGCTG 60.502 66.667 11.55 0.00 46.56 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.