Multiple sequence alignment - TraesCS7D01G521900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G521900 chr7D 100.000 6120 0 0 1 6120 618889432 618895551 0.000000e+00 11302.0
1 TraesCS7D01G521900 chr7D 82.739 3395 509 50 1146 4491 619156526 619153160 0.000000e+00 2952.0
2 TraesCS7D01G521900 chr7D 91.111 45 3 1 244 287 213455594 213455638 6.620000e-05 60.2
3 TraesCS7D01G521900 chr7B 91.965 5364 263 63 346 5633 713459313 713454042 0.000000e+00 7363.0
4 TraesCS7D01G521900 chr7B 82.538 3373 530 36 1166 4495 714598270 714594914 0.000000e+00 2911.0
5 TraesCS7D01G521900 chr7B 82.302 3379 534 36 1151 4494 714301477 714298128 0.000000e+00 2868.0
6 TraesCS7D01G521900 chr7B 82.663 3305 508 40 1229 4495 714461473 714458196 0.000000e+00 2868.0
7 TraesCS7D01G521900 chr7B 89.457 2248 154 38 3432 5633 713360278 713362488 0.000000e+00 2761.0
8 TraesCS7D01G521900 chr7B 86.132 2495 316 25 2647 5121 713299568 713302052 0.000000e+00 2663.0
9 TraesCS7D01G521900 chr7B 81.550 3149 497 53 1958 5039 714359622 714356491 0.000000e+00 2519.0
10 TraesCS7D01G521900 chr7B 80.879 2594 444 29 1927 4491 714474635 714472065 0.000000e+00 1995.0
11 TraesCS7D01G521900 chr7B 89.136 1482 113 16 458 1924 713297175 713298623 0.000000e+00 1801.0
12 TraesCS7D01G521900 chr7B 91.762 1311 72 13 711 2009 713358962 713360248 0.000000e+00 1790.0
13 TraesCS7D01G521900 chr7B 80.432 2407 399 57 2789 5153 714620788 714618412 0.000000e+00 1770.0
14 TraesCS7D01G521900 chr7B 84.367 1644 218 23 1151 2761 714622417 714620780 0.000000e+00 1576.0
15 TraesCS7D01G521900 chr7B 82.685 797 128 10 2789 3580 714605470 714604679 0.000000e+00 699.0
16 TraesCS7D01G521900 chr7B 81.455 825 117 24 1146 1940 714522452 714521634 1.440000e-180 643.0
17 TraesCS7D01G521900 chr7B 78.799 783 157 8 3545 4324 714426270 714425494 9.090000e-143 518.0
18 TraesCS7D01G521900 chr7B 92.000 50 2 2 251 299 692879299 692879347 1.100000e-07 69.4
19 TraesCS7D01G521900 chr7A 89.370 5400 416 72 384 5689 712440072 712445407 0.000000e+00 6647.0
20 TraesCS7D01G521900 chr7A 80.545 4040 648 82 1166 5144 712834897 712830935 0.000000e+00 2979.0
21 TraesCS7D01G521900 chr7A 81.687 2774 440 37 1759 4495 713122240 713119498 0.000000e+00 2246.0
22 TraesCS7D01G521900 chr7A 83.767 1614 235 17 1170 2764 713136014 713134409 0.000000e+00 1504.0
23 TraesCS7D01G521900 chr7A 82.728 799 124 12 2789 3580 713134420 713133629 0.000000e+00 699.0
24 TraesCS7D01G521900 chr7A 84.887 397 43 6 5733 6117 712445489 712445880 9.620000e-103 385.0
25 TraesCS7D01G521900 chr6A 93.878 49 2 1 251 299 235083852 235083805 8.510000e-09 73.1
26 TraesCS7D01G521900 chr4A 93.878 49 2 1 251 299 236541741 236541788 8.510000e-09 73.1
27 TraesCS7D01G521900 chr4B 90.566 53 2 3 249 300 666254138 666254188 3.960000e-07 67.6
28 TraesCS7D01G521900 chr3D 95.238 42 0 2 251 291 68836916 68836876 1.420000e-06 65.8
29 TraesCS7D01G521900 chr6B 91.489 47 1 2 247 290 604075548 604075502 1.840000e-05 62.1
30 TraesCS7D01G521900 chr3B 88.679 53 3 3 244 294 28121580 28121631 1.840000e-05 62.1
31 TraesCS7D01G521900 chr2D 91.304 46 2 2 22 67 406199814 406199771 1.840000e-05 62.1
32 TraesCS7D01G521900 chr2D 93.023 43 2 1 246 287 572367541 572367583 1.840000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G521900 chr7D 618889432 618895551 6119 False 11302.0 11302 100.0000 1 6120 1 chr7D.!!$F2 6119
1 TraesCS7D01G521900 chr7D 619153160 619156526 3366 True 2952.0 2952 82.7390 1146 4491 1 chr7D.!!$R1 3345
2 TraesCS7D01G521900 chr7B 713454042 713459313 5271 True 7363.0 7363 91.9650 346 5633 1 chr7B.!!$R1 5287
3 TraesCS7D01G521900 chr7B 714594914 714598270 3356 True 2911.0 2911 82.5380 1166 4495 1 chr7B.!!$R8 3329
4 TraesCS7D01G521900 chr7B 714298128 714301477 3349 True 2868.0 2868 82.3020 1151 4494 1 chr7B.!!$R2 3343
5 TraesCS7D01G521900 chr7B 714458196 714461473 3277 True 2868.0 2868 82.6630 1229 4495 1 chr7B.!!$R5 3266
6 TraesCS7D01G521900 chr7B 714356491 714359622 3131 True 2519.0 2519 81.5500 1958 5039 1 chr7B.!!$R3 3081
7 TraesCS7D01G521900 chr7B 713358962 713362488 3526 False 2275.5 2761 90.6095 711 5633 2 chr7B.!!$F3 4922
8 TraesCS7D01G521900 chr7B 713297175 713302052 4877 False 2232.0 2663 87.6340 458 5121 2 chr7B.!!$F2 4663
9 TraesCS7D01G521900 chr7B 714472065 714474635 2570 True 1995.0 1995 80.8790 1927 4491 1 chr7B.!!$R6 2564
10 TraesCS7D01G521900 chr7B 714618412 714622417 4005 True 1673.0 1770 82.3995 1151 5153 2 chr7B.!!$R10 4002
11 TraesCS7D01G521900 chr7B 714604679 714605470 791 True 699.0 699 82.6850 2789 3580 1 chr7B.!!$R9 791
12 TraesCS7D01G521900 chr7B 714521634 714522452 818 True 643.0 643 81.4550 1146 1940 1 chr7B.!!$R7 794
13 TraesCS7D01G521900 chr7B 714425494 714426270 776 True 518.0 518 78.7990 3545 4324 1 chr7B.!!$R4 779
14 TraesCS7D01G521900 chr7A 712440072 712445880 5808 False 3516.0 6647 87.1285 384 6117 2 chr7A.!!$F1 5733
15 TraesCS7D01G521900 chr7A 712830935 712834897 3962 True 2979.0 2979 80.5450 1166 5144 1 chr7A.!!$R1 3978
16 TraesCS7D01G521900 chr7A 713119498 713122240 2742 True 2246.0 2246 81.6870 1759 4495 1 chr7A.!!$R2 2736
17 TraesCS7D01G521900 chr7A 713133629 713136014 2385 True 1101.5 1504 83.2475 1170 3580 2 chr7A.!!$R3 2410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.251519 AACGGAGTAACGGAGGGAGT 60.252 55.0 0.0 0.0 45.00 3.85 F
359 360 0.466189 CCCATTCCCTCAATCCCACG 60.466 60.0 0.0 0.0 0.00 4.94 F
815 833 0.688087 CTCTACTCTCCACCCCACCC 60.688 65.0 0.0 0.0 0.00 4.61 F
1570 1693 0.613260 TAGTGCGAGCCATTGAGGTT 59.387 50.0 0.0 0.0 40.61 3.50 F
2682 3082 1.369625 GGGGCGTGTTATGTCAGAAG 58.630 55.0 0.0 0.0 0.00 2.85 F
3478 3944 0.665670 CTAGCAGTCGGGATGATGCG 60.666 60.0 0.0 0.0 43.41 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1570 0.253327 CCTTGTAGTGCCCCTCCTTC 59.747 60.000 0.00 0.0 0.00 3.46 R
1552 1675 0.674895 GAACCTCAATGGCTCGCACT 60.675 55.000 0.00 0.0 40.22 4.40 R
1620 1746 2.406616 CGCCACTGGTTGTATGCCC 61.407 63.158 0.00 0.0 0.00 5.36 R
2897 3297 2.158623 ACAGAAGTGTTTGGATGGCTGA 60.159 45.455 0.00 0.0 30.30 4.26 R
4584 5112 0.533032 CTTGAGGGACGAAGGGAGAC 59.467 60.000 0.00 0.0 0.00 3.36 R
5464 6041 0.179100 CAGTGCCTAGGACATGACCG 60.179 60.000 14.75 0.0 34.73 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.504924 TTTAATCTAGGGCATACATTTTCCG 57.495 36.000 0.00 0.00 0.00 4.30
40 41 4.974645 ATCTAGGGCATACATTTTCCGA 57.025 40.909 0.00 0.00 0.00 4.55
41 42 4.764050 TCTAGGGCATACATTTTCCGAA 57.236 40.909 0.00 0.00 0.00 4.30
42 43 5.304686 TCTAGGGCATACATTTTCCGAAT 57.695 39.130 0.00 0.00 0.00 3.34
43 44 5.690865 TCTAGGGCATACATTTTCCGAATT 58.309 37.500 0.00 0.00 0.00 2.17
44 45 6.126409 TCTAGGGCATACATTTTCCGAATTT 58.874 36.000 0.00 0.00 0.00 1.82
45 46 5.009854 AGGGCATACATTTTCCGAATTTG 57.990 39.130 0.00 0.00 0.00 2.32
46 47 4.466015 AGGGCATACATTTTCCGAATTTGT 59.534 37.500 0.00 2.96 0.00 2.83
47 48 5.046663 AGGGCATACATTTTCCGAATTTGTT 60.047 36.000 2.77 0.00 0.00 2.83
48 49 6.153680 AGGGCATACATTTTCCGAATTTGTTA 59.846 34.615 2.77 0.00 0.00 2.41
49 50 6.983890 GGGCATACATTTTCCGAATTTGTTAT 59.016 34.615 2.77 0.00 0.00 1.89
50 51 8.138712 GGGCATACATTTTCCGAATTTGTTATA 58.861 33.333 2.77 0.00 0.00 0.98
51 52 9.522804 GGCATACATTTTCCGAATTTGTTATAA 57.477 29.630 2.77 0.00 0.00 0.98
91 92 8.940768 TTTTTCTAATTTTGAGACCACAAAGG 57.059 30.769 0.00 0.00 40.15 3.11
92 93 7.889873 TTTCTAATTTTGAGACCACAAAGGA 57.110 32.000 0.00 0.00 40.15 3.36
93 94 6.877611 TCTAATTTTGAGACCACAAAGGAC 57.122 37.500 0.00 0.00 40.15 3.85
94 95 6.361433 TCTAATTTTGAGACCACAAAGGACA 58.639 36.000 0.00 0.00 40.15 4.02
95 96 5.520376 AATTTTGAGACCACAAAGGACAG 57.480 39.130 0.00 0.00 40.15 3.51
96 97 2.638480 TTGAGACCACAAAGGACAGG 57.362 50.000 0.00 0.00 41.22 4.00
97 98 0.764890 TGAGACCACAAAGGACAGGG 59.235 55.000 0.00 0.00 41.22 4.45
98 99 0.765510 GAGACCACAAAGGACAGGGT 59.234 55.000 0.00 0.00 41.22 4.34
99 100 0.474184 AGACCACAAAGGACAGGGTG 59.526 55.000 0.00 0.00 41.22 4.61
100 101 4.500265 CCACAAAGGACAGGGTGG 57.500 61.111 0.00 0.00 44.17 4.61
102 103 3.021451 CACAAAGGACAGGGTGGAC 57.979 57.895 0.00 0.00 0.00 4.02
103 104 0.537371 CACAAAGGACAGGGTGGACC 60.537 60.000 0.00 0.00 40.67 4.46
113 114 3.754766 GGGTGGACCTAGCGTTTAG 57.245 57.895 0.00 0.00 35.85 1.85
114 115 1.188863 GGGTGGACCTAGCGTTTAGA 58.811 55.000 0.00 0.00 35.85 2.10
115 116 1.551883 GGGTGGACCTAGCGTTTAGAA 59.448 52.381 0.00 0.00 35.85 2.10
116 117 2.027837 GGGTGGACCTAGCGTTTAGAAA 60.028 50.000 0.00 0.00 35.85 2.52
117 118 3.557686 GGGTGGACCTAGCGTTTAGAAAA 60.558 47.826 0.00 0.00 35.85 2.29
118 119 4.067192 GGTGGACCTAGCGTTTAGAAAAA 58.933 43.478 0.00 0.00 0.00 1.94
137 138 4.675063 AAAAATAGTGATGGACCTGGGT 57.325 40.909 0.00 0.00 0.00 4.51
138 139 3.933861 AAATAGTGATGGACCTGGGTC 57.066 47.619 11.03 11.03 43.87 4.46
139 140 2.877154 ATAGTGATGGACCTGGGTCT 57.123 50.000 17.82 0.78 44.04 3.85
140 141 3.993658 ATAGTGATGGACCTGGGTCTA 57.006 47.619 17.82 13.29 44.04 2.59
141 142 2.166907 AGTGATGGACCTGGGTCTAG 57.833 55.000 17.82 0.00 44.04 2.43
142 143 1.362932 AGTGATGGACCTGGGTCTAGT 59.637 52.381 17.82 5.92 44.04 2.57
143 144 1.482593 GTGATGGACCTGGGTCTAGTG 59.517 57.143 17.82 0.00 44.04 2.74
144 145 1.361197 TGATGGACCTGGGTCTAGTGA 59.639 52.381 17.82 0.00 44.04 3.41
145 146 1.757699 GATGGACCTGGGTCTAGTGAC 59.242 57.143 17.82 2.77 44.04 3.67
158 159 4.993705 TCTAGTGACCCTGGACAATTTT 57.006 40.909 0.00 0.00 0.00 1.82
159 160 4.651778 TCTAGTGACCCTGGACAATTTTG 58.348 43.478 0.00 0.00 0.00 2.44
160 161 3.312736 AGTGACCCTGGACAATTTTGT 57.687 42.857 0.00 0.00 45.65 2.83
173 174 5.776173 ACAATTTTGTCCACGTTATTCCA 57.224 34.783 0.00 0.00 36.50 3.53
174 175 5.525199 ACAATTTTGTCCACGTTATTCCAC 58.475 37.500 0.00 0.00 36.50 4.02
175 176 5.300792 ACAATTTTGTCCACGTTATTCCACT 59.699 36.000 0.00 0.00 36.50 4.00
176 177 6.183360 ACAATTTTGTCCACGTTATTCCACTT 60.183 34.615 0.00 0.00 36.50 3.16
177 178 4.822036 TTTGTCCACGTTATTCCACTTG 57.178 40.909 0.00 0.00 0.00 3.16
178 179 3.755112 TGTCCACGTTATTCCACTTGA 57.245 42.857 0.00 0.00 0.00 3.02
179 180 4.074627 TGTCCACGTTATTCCACTTGAA 57.925 40.909 0.00 0.00 37.38 2.69
180 181 4.452825 TGTCCACGTTATTCCACTTGAAA 58.547 39.130 0.00 0.00 36.33 2.69
181 182 4.882427 TGTCCACGTTATTCCACTTGAAAA 59.118 37.500 0.00 0.00 36.33 2.29
182 183 5.357314 TGTCCACGTTATTCCACTTGAAAAA 59.643 36.000 0.00 0.00 36.33 1.94
238 239 5.695851 ATGACACTTCATTCTTGTGGTTC 57.304 39.130 0.00 0.00 39.66 3.62
239 240 4.522114 TGACACTTCATTCTTGTGGTTCA 58.478 39.130 0.00 0.00 36.16 3.18
240 241 4.335315 TGACACTTCATTCTTGTGGTTCAC 59.665 41.667 0.00 0.00 36.16 3.18
241 242 4.269183 ACACTTCATTCTTGTGGTTCACA 58.731 39.130 0.00 0.00 43.02 3.58
242 243 8.764365 ATGACACTTCATTCTTGTGGTTCACAA 61.764 37.037 12.13 12.13 44.31 3.33
255 256 6.792326 TGTGGTTCACAATAGTATACTCTCG 58.208 40.000 9.12 1.29 41.69 4.04
256 257 6.376299 TGTGGTTCACAATAGTATACTCTCGT 59.624 38.462 9.12 1.95 41.69 4.18
257 258 7.094075 TGTGGTTCACAATAGTATACTCTCGTT 60.094 37.037 9.12 0.00 41.69 3.85
258 259 7.758528 GTGGTTCACAATAGTATACTCTCGTTT 59.241 37.037 9.12 0.00 34.08 3.60
259 260 7.972277 TGGTTCACAATAGTATACTCTCGTTTC 59.028 37.037 9.12 0.00 0.00 2.78
260 261 7.972277 GGTTCACAATAGTATACTCTCGTTTCA 59.028 37.037 9.12 0.00 0.00 2.69
261 262 9.350357 GTTCACAATAGTATACTCTCGTTTCAA 57.650 33.333 9.12 0.00 0.00 2.69
262 263 9.917129 TTCACAATAGTATACTCTCGTTTCAAA 57.083 29.630 9.12 0.00 0.00 2.69
263 264 9.917129 TCACAATAGTATACTCTCGTTTCAAAA 57.083 29.630 9.12 0.00 0.00 2.44
273 274 7.845066 ACTCTCGTTTCAAAATAGATAACCC 57.155 36.000 0.00 0.00 0.00 4.11
274 275 7.391620 ACTCTCGTTTCAAAATAGATAACCCA 58.608 34.615 0.00 0.00 0.00 4.51
275 276 7.881232 ACTCTCGTTTCAAAATAGATAACCCAA 59.119 33.333 0.00 0.00 0.00 4.12
276 277 8.036273 TCTCGTTTCAAAATAGATAACCCAAC 57.964 34.615 0.00 0.00 0.00 3.77
277 278 7.881232 TCTCGTTTCAAAATAGATAACCCAACT 59.119 33.333 0.00 0.00 0.00 3.16
278 279 8.398878 TCGTTTCAAAATAGATAACCCAACTT 57.601 30.769 0.00 0.00 0.00 2.66
279 280 8.852135 TCGTTTCAAAATAGATAACCCAACTTT 58.148 29.630 0.00 0.00 0.00 2.66
280 281 8.911662 CGTTTCAAAATAGATAACCCAACTTTG 58.088 33.333 0.00 0.00 0.00 2.77
281 282 9.758651 GTTTCAAAATAGATAACCCAACTTTGT 57.241 29.630 0.00 0.00 0.00 2.83
284 285 9.802039 TCAAAATAGATAACCCAACTTTGTACT 57.198 29.630 0.00 0.00 0.00 2.73
299 300 8.594881 AACTTTGTACTAAGTTGAGTCATCTG 57.405 34.615 27.27 0.00 44.42 2.90
300 301 6.647067 ACTTTGTACTAAGTTGAGTCATCTGC 59.353 38.462 15.68 0.00 34.81 4.26
301 302 5.984695 TGTACTAAGTTGAGTCATCTGCT 57.015 39.130 4.47 0.00 0.00 4.24
302 303 5.955488 TGTACTAAGTTGAGTCATCTGCTC 58.045 41.667 4.47 0.00 0.00 4.26
303 304 4.464069 ACTAAGTTGAGTCATCTGCTCC 57.536 45.455 4.47 0.00 32.31 4.70
304 305 4.093011 ACTAAGTTGAGTCATCTGCTCCT 58.907 43.478 4.47 0.00 32.31 3.69
305 306 5.265191 ACTAAGTTGAGTCATCTGCTCCTA 58.735 41.667 4.47 0.00 32.31 2.94
306 307 5.896678 ACTAAGTTGAGTCATCTGCTCCTAT 59.103 40.000 4.47 0.00 32.31 2.57
307 308 4.935352 AGTTGAGTCATCTGCTCCTATC 57.065 45.455 2.83 0.00 32.31 2.08
308 309 4.545678 AGTTGAGTCATCTGCTCCTATCT 58.454 43.478 2.83 0.00 32.31 1.98
309 310 4.961730 AGTTGAGTCATCTGCTCCTATCTT 59.038 41.667 2.83 0.00 32.31 2.40
310 311 5.068987 AGTTGAGTCATCTGCTCCTATCTTC 59.931 44.000 2.83 0.00 32.31 2.87
311 312 3.567585 TGAGTCATCTGCTCCTATCTTCG 59.432 47.826 0.00 0.00 32.31 3.79
312 313 3.818210 GAGTCATCTGCTCCTATCTTCGA 59.182 47.826 0.00 0.00 0.00 3.71
313 314 4.211125 AGTCATCTGCTCCTATCTTCGAA 58.789 43.478 0.00 0.00 0.00 3.71
314 315 4.037446 AGTCATCTGCTCCTATCTTCGAAC 59.963 45.833 0.00 0.00 0.00 3.95
315 316 3.003793 TCATCTGCTCCTATCTTCGAACG 59.996 47.826 0.00 0.00 0.00 3.95
316 317 1.676529 TCTGCTCCTATCTTCGAACGG 59.323 52.381 0.00 0.00 0.00 4.44
317 318 1.676529 CTGCTCCTATCTTCGAACGGA 59.323 52.381 0.00 0.00 0.00 4.69
318 319 1.676529 TGCTCCTATCTTCGAACGGAG 59.323 52.381 17.37 17.37 43.18 4.63
320 321 2.877168 GCTCCTATCTTCGAACGGAGTA 59.123 50.000 20.34 4.40 45.00 2.59
321 322 3.314635 GCTCCTATCTTCGAACGGAGTAA 59.685 47.826 20.34 0.84 45.00 2.24
322 323 4.789161 GCTCCTATCTTCGAACGGAGTAAC 60.789 50.000 20.34 8.17 45.00 2.50
323 324 3.310774 TCCTATCTTCGAACGGAGTAACG 59.689 47.826 0.00 0.00 45.00 3.18
324 325 2.556534 ATCTTCGAACGGAGTAACGG 57.443 50.000 0.00 0.00 45.00 4.44
325 326 1.522668 TCTTCGAACGGAGTAACGGA 58.477 50.000 0.00 0.00 45.00 4.69
326 327 1.466167 TCTTCGAACGGAGTAACGGAG 59.534 52.381 0.00 0.00 45.00 4.63
327 328 0.523072 TTCGAACGGAGTAACGGAGG 59.477 55.000 0.00 0.00 45.00 4.30
328 329 1.138247 CGAACGGAGTAACGGAGGG 59.862 63.158 0.00 0.00 45.00 4.30
329 330 1.308069 CGAACGGAGTAACGGAGGGA 61.308 60.000 0.00 0.00 45.00 4.20
330 331 0.455005 GAACGGAGTAACGGAGGGAG 59.545 60.000 0.00 0.00 45.00 4.30
331 332 0.251519 AACGGAGTAACGGAGGGAGT 60.252 55.000 0.00 0.00 45.00 3.85
332 333 0.620556 ACGGAGTAACGGAGGGAGTA 59.379 55.000 0.00 0.00 41.94 2.59
333 334 1.307097 CGGAGTAACGGAGGGAGTAG 58.693 60.000 0.00 0.00 0.00 2.57
334 335 1.134280 CGGAGTAACGGAGGGAGTAGA 60.134 57.143 0.00 0.00 0.00 2.59
335 336 2.486907 CGGAGTAACGGAGGGAGTAGAT 60.487 54.545 0.00 0.00 0.00 1.98
336 337 3.244353 CGGAGTAACGGAGGGAGTAGATA 60.244 52.174 0.00 0.00 0.00 1.98
337 338 4.565236 CGGAGTAACGGAGGGAGTAGATAT 60.565 50.000 0.00 0.00 0.00 1.63
338 339 4.943093 GGAGTAACGGAGGGAGTAGATATC 59.057 50.000 0.00 0.00 0.00 1.63
339 340 5.280624 GGAGTAACGGAGGGAGTAGATATCT 60.281 48.000 10.73 10.73 0.00 1.98
340 341 5.807909 AGTAACGGAGGGAGTAGATATCTC 58.192 45.833 8.95 1.35 0.00 2.75
349 350 4.954089 GGAGTAGATATCTCCCATTCCCT 58.046 47.826 8.95 0.00 43.90 4.20
359 360 0.466189 CCCATTCCCTCAATCCCACG 60.466 60.000 0.00 0.00 0.00 4.94
408 409 1.733526 GCCGCCTTCACTGTGTTTT 59.266 52.632 7.79 0.00 0.00 2.43
442 443 2.028733 CACCGCAAAAAGCCATGCC 61.029 57.895 0.00 0.00 41.38 4.40
445 446 2.946346 CGCAAAAAGCCATGCCCCT 61.946 57.895 0.00 0.00 41.38 4.79
652 654 2.567470 GATCCACATGTGCGTGCGTG 62.567 60.000 20.81 5.01 35.47 5.34
708 710 3.062774 GCTTCTATTTTCCTCACGAGCAC 59.937 47.826 0.00 0.00 0.00 4.40
709 711 2.876091 TCTATTTTCCTCACGAGCACG 58.124 47.619 0.76 0.76 45.75 5.34
751 765 5.881637 TTATTGCGTTTGAAACAAAGCTC 57.118 34.783 8.93 0.00 0.00 4.09
755 769 3.378742 TGCGTTTGAAACAAAGCTCCTAA 59.621 39.130 8.93 0.00 0.00 2.69
815 833 0.688087 CTCTACTCTCCACCCCACCC 60.688 65.000 0.00 0.00 0.00 4.61
816 834 1.080354 CTACTCTCCACCCCACCCA 59.920 63.158 0.00 0.00 0.00 4.51
817 835 1.229400 TACTCTCCACCCCACCCAC 60.229 63.158 0.00 0.00 0.00 4.61
818 836 2.758852 TACTCTCCACCCCACCCACC 62.759 65.000 0.00 0.00 0.00 4.61
819 837 4.995058 TCTCCACCCCACCCACCC 62.995 72.222 0.00 0.00 0.00 4.61
848 866 5.466127 AGTTCTAATAATGGGGCCAGAAA 57.534 39.130 4.39 0.00 0.00 2.52
893 917 1.774254 TCGTCCTATGGCCATTGGATT 59.226 47.619 39.74 15.30 42.85 3.01
896 920 0.883833 CCTATGGCCATTGGATTCGC 59.116 55.000 34.89 0.00 36.06 4.70
902 926 0.886490 GCCATTGGATTCGCGGAGAT 60.886 55.000 6.13 0.00 0.00 2.75
1026 1054 2.031516 CGCTCAAGCCACAGGTGAG 61.032 63.158 0.00 0.00 37.91 3.51
1040 1069 3.706086 ACAGGTGAGGTGAAAAATTGCTT 59.294 39.130 0.00 0.00 0.00 3.91
1059 1088 3.777478 CTTGCTTATTTGCTCCCACATG 58.223 45.455 0.00 0.00 0.00 3.21
1063 1092 3.066760 GCTTATTTGCTCCCACATGTACC 59.933 47.826 0.00 0.00 0.00 3.34
1064 1093 2.897271 ATTTGCTCCCACATGTACCA 57.103 45.000 0.00 0.00 0.00 3.25
1405 1528 1.066143 ACCTACCAGGCGAATGAAGTG 60.066 52.381 0.00 0.00 39.63 3.16
1447 1570 2.863153 CTTCGTCGCAAGGCCAAG 59.137 61.111 5.01 0.00 40.39 3.61
1552 1675 2.420129 GGGAAGAAAGCTCCGCAAGATA 60.420 50.000 0.00 0.00 43.02 1.98
1570 1693 0.613260 TAGTGCGAGCCATTGAGGTT 59.387 50.000 0.00 0.00 40.61 3.50
2682 3082 1.369625 GGGGCGTGTTATGTCAGAAG 58.630 55.000 0.00 0.00 0.00 2.85
2783 3183 3.962718 CCCAGGCAAGATTGGATATGTTT 59.037 43.478 0.00 0.00 36.55 2.83
3268 3707 6.262273 CCCTACAGACACTTACATGTTTTGTT 59.738 38.462 2.30 0.00 39.87 2.83
3478 3944 0.665670 CTAGCAGTCGGGATGATGCG 60.666 60.000 0.00 0.00 43.41 4.73
3610 4076 9.941664 GTTGTGATCCATATTTCTCATTGTAAG 57.058 33.333 0.00 0.00 0.00 2.34
3726 4195 7.293299 TGAGAGATGGTGGGAAATAGATAATGT 59.707 37.037 0.00 0.00 0.00 2.71
3865 4348 2.489722 TGAGAGATGTCCAGAGTTGACG 59.510 50.000 0.00 0.00 35.46 4.35
4471 4978 1.585668 CAGTCAGCATCGTCGATTCAC 59.414 52.381 4.63 0.00 0.00 3.18
4508 5015 2.687700 AGCAGAGGTGTCATCATCAC 57.312 50.000 0.00 0.00 35.36 3.06
4542 5070 5.077564 AGTTGGGGTGGAGAATTTAGAAAC 58.922 41.667 0.00 0.00 0.00 2.78
4543 5071 3.681593 TGGGGTGGAGAATTTAGAAACG 58.318 45.455 0.00 0.00 0.00 3.60
4631 5159 0.666913 CATTGATAGCTGCAGTGGGC 59.333 55.000 16.64 0.71 45.13 5.36
4650 5178 2.433604 GGCTGACATCTCTGGAATCTCA 59.566 50.000 0.00 0.00 0.00 3.27
4702 5230 5.710099 CCTCTACCTTTGGAGTTGCAATAAA 59.290 40.000 0.59 1.96 0.00 1.40
4716 5244 5.435686 TGCAATAAACTGTCATCCCTACT 57.564 39.130 0.00 0.00 0.00 2.57
4728 5256 2.505982 CCTACTGGATGGGCCACG 59.494 66.667 9.28 0.00 43.33 4.94
4738 5266 1.050988 ATGGGCCACGAGCATACTCT 61.051 55.000 9.28 0.00 46.50 3.24
4748 5276 5.451937 CCACGAGCATACTCTTATCTCCAAA 60.452 44.000 0.00 0.00 41.09 3.28
4781 5309 3.933861 AGAACTGCCCTGGTATAAAGG 57.066 47.619 0.00 0.00 34.31 3.11
4863 5391 7.720957 TGCTCATTATTATGGAAGTAAGCATGT 59.279 33.333 0.00 0.00 32.40 3.21
4943 5489 9.440784 GATAACTATAATAGCATCACTCGTAGC 57.559 37.037 0.00 0.00 0.00 3.58
4971 5526 8.655092 CGGCAGAAAAATGAAGCAAATTAAATA 58.345 29.630 0.00 0.00 0.00 1.40
4972 5527 9.977762 GGCAGAAAAATGAAGCAAATTAAATAG 57.022 29.630 0.00 0.00 0.00 1.73
5122 5680 3.057174 GTGCCATCCGTAGAGATTAGAGG 60.057 52.174 0.00 0.00 0.00 3.69
5183 5755 6.319658 CAGGTTTGTGATGTAGAAATATGCCT 59.680 38.462 0.00 0.00 0.00 4.75
5186 5758 7.282224 GGTTTGTGATGTAGAAATATGCCTACA 59.718 37.037 15.56 15.56 46.15 2.74
5191 5763 4.368315 TGTAGAAATATGCCTACACTGCG 58.632 43.478 11.36 0.00 39.96 5.18
5218 5790 8.988934 GGAACCTTTGATTGGTTTTCTTATTTC 58.011 33.333 0.00 0.00 46.59 2.17
5268 5840 3.575256 TGTTTGCAGAATTCTTCCAGCAT 59.425 39.130 16.32 0.00 39.75 3.79
5273 5845 3.314635 GCAGAATTCTTCCAGCATACAGG 59.685 47.826 4.86 0.00 33.13 4.00
5312 5884 2.122768 CTTGGGGTGGAGCTATTCTCT 58.877 52.381 0.00 0.00 41.60 3.10
5316 5888 1.488393 GGGTGGAGCTATTCTCTTGCT 59.512 52.381 0.00 0.00 41.60 3.91
5317 5889 2.559440 GGTGGAGCTATTCTCTTGCTG 58.441 52.381 0.00 0.00 41.60 4.41
5318 5890 2.169352 GGTGGAGCTATTCTCTTGCTGA 59.831 50.000 0.00 0.00 41.60 4.26
5319 5891 3.456280 GTGGAGCTATTCTCTTGCTGAG 58.544 50.000 0.00 1.66 43.96 3.35
5326 5898 3.396767 CTCTTGCTGAGAGGCCCA 58.603 61.111 0.00 0.00 46.77 5.36
5327 5899 1.078567 CTCTTGCTGAGAGGCCCAC 60.079 63.158 0.00 0.00 46.77 4.61
5363 5937 3.046390 CTGAACTGCGAGATCCGTAATC 58.954 50.000 5.66 3.93 41.15 1.75
5366 5940 1.338337 ACTGCGAGATCCGTAATCAGG 59.662 52.381 5.66 0.00 41.15 3.86
5367 5941 1.609072 CTGCGAGATCCGTAATCAGGA 59.391 52.381 5.66 0.00 42.69 3.86
5368 5942 2.028876 TGCGAGATCCGTAATCAGGAA 58.971 47.619 5.66 0.00 41.69 3.36
5369 5943 2.034685 TGCGAGATCCGTAATCAGGAAG 59.965 50.000 5.66 0.00 41.69 3.46
5370 5944 2.667137 CGAGATCCGTAATCAGGAAGC 58.333 52.381 0.00 0.00 41.69 3.86
5371 5945 2.667137 GAGATCCGTAATCAGGAAGCG 58.333 52.381 0.00 0.00 41.69 4.68
5372 5946 1.140816 GATCCGTAATCAGGAAGCGC 58.859 55.000 0.00 0.00 41.69 5.92
5373 5947 0.753262 ATCCGTAATCAGGAAGCGCT 59.247 50.000 2.64 2.64 41.69 5.92
5374 5948 0.535335 TCCGTAATCAGGAAGCGCTT 59.465 50.000 25.35 25.35 34.33 4.68
5375 5949 0.931005 CCGTAATCAGGAAGCGCTTC 59.069 55.000 36.49 36.49 38.80 3.86
5376 5950 1.471676 CCGTAATCAGGAAGCGCTTCT 60.472 52.381 40.11 26.79 39.45 2.85
5377 5951 2.223735 CCGTAATCAGGAAGCGCTTCTA 60.224 50.000 40.11 28.61 39.45 2.10
5378 5952 3.444916 CGTAATCAGGAAGCGCTTCTAA 58.555 45.455 40.11 28.27 39.45 2.10
5379 5953 4.051922 CGTAATCAGGAAGCGCTTCTAAT 58.948 43.478 40.11 28.99 39.45 1.73
5380 5954 5.220381 CGTAATCAGGAAGCGCTTCTAATA 58.780 41.667 40.11 26.49 39.45 0.98
5395 5969 7.278868 GCGCTTCTAATACTATTGGCTATCAAT 59.721 37.037 0.00 0.00 46.79 2.57
5396 5970 8.812329 CGCTTCTAATACTATTGGCTATCAATC 58.188 37.037 0.00 0.00 44.32 2.67
5397 5971 9.658799 GCTTCTAATACTATTGGCTATCAATCA 57.341 33.333 0.00 0.00 44.32 2.57
5408 5982 7.649533 TTGGCTATCAATCATTTCATTCTGT 57.350 32.000 0.00 0.00 0.00 3.41
5426 6003 4.645535 TCTGTTCCCAGAAGATCTTGTTG 58.354 43.478 14.00 10.80 44.67 3.33
5434 6011 7.413446 TCCCAGAAGATCTTGTTGGAATAATT 58.587 34.615 26.35 0.00 27.13 1.40
5436 6013 8.624776 CCCAGAAGATCTTGTTGGAATAATTAC 58.375 37.037 26.35 5.38 0.00 1.89
5464 6041 7.662669 TGTATTTTTCCACCTCTGTTTACCTAC 59.337 37.037 0.00 0.00 0.00 3.18
5474 6051 3.194116 TCTGTTTACCTACGGTCATGTCC 59.806 47.826 0.00 0.00 37.09 4.02
5476 6053 4.343231 TGTTTACCTACGGTCATGTCCTA 58.657 43.478 7.41 0.00 37.09 2.94
5478 6055 2.068834 ACCTACGGTCATGTCCTAGG 57.931 55.000 21.51 21.51 35.96 3.02
5479 6056 0.674534 CCTACGGTCATGTCCTAGGC 59.325 60.000 2.96 0.00 0.00 3.93
5480 6057 1.399714 CTACGGTCATGTCCTAGGCA 58.600 55.000 2.96 6.10 0.00 4.75
5481 6058 1.067212 CTACGGTCATGTCCTAGGCAC 59.933 57.143 2.96 4.14 0.00 5.01
5483 6060 0.179100 CGGTCATGTCCTAGGCACTG 60.179 60.000 2.96 0.80 41.52 3.66
5485 6062 1.134670 GGTCATGTCCTAGGCACTGTC 60.135 57.143 2.96 0.00 41.52 3.51
5486 6063 1.550524 GTCATGTCCTAGGCACTGTCA 59.449 52.381 2.96 0.00 41.52 3.58
5487 6064 1.827344 TCATGTCCTAGGCACTGTCAG 59.173 52.381 2.96 0.00 41.52 3.51
5488 6065 1.552337 CATGTCCTAGGCACTGTCAGT 59.448 52.381 2.96 0.00 41.52 3.41
5489 6066 1.717032 TGTCCTAGGCACTGTCAGTT 58.283 50.000 2.96 0.00 41.52 3.16
5490 6067 2.047061 TGTCCTAGGCACTGTCAGTTT 58.953 47.619 2.96 0.00 41.52 2.66
5491 6068 2.438021 TGTCCTAGGCACTGTCAGTTTT 59.562 45.455 2.96 0.00 41.52 2.43
5493 6070 2.972713 TCCTAGGCACTGTCAGTTTTCT 59.027 45.455 2.96 3.97 41.52 2.52
5494 6071 3.070018 CCTAGGCACTGTCAGTTTTCTG 58.930 50.000 1.67 0.00 44.56 3.02
5495 6072 2.717639 AGGCACTGTCAGTTTTCTGT 57.282 45.000 1.67 0.00 43.07 3.41
5496 6073 2.292267 AGGCACTGTCAGTTTTCTGTG 58.708 47.619 1.67 0.00 43.07 3.66
5515 6109 0.796927 GCTAGGCACCGTCAGTTTTC 59.203 55.000 0.00 0.00 0.00 2.29
5527 6121 4.976116 CCGTCAGTTTTCTGTTGAAATTCC 59.024 41.667 0.00 0.00 46.98 3.01
5541 6137 0.036306 AATTCCGTCGCAGTTTCCCT 59.964 50.000 0.00 0.00 0.00 4.20
5551 6147 3.751175 TCGCAGTTTCCCTGTTTTATCTG 59.249 43.478 0.00 0.00 43.55 2.90
5554 6150 4.518970 GCAGTTTCCCTGTTTTATCTGTGA 59.481 41.667 0.00 0.00 43.55 3.58
5587 6186 3.130693 ACAGAGTACCGCCATTTAGAGTC 59.869 47.826 0.00 0.00 0.00 3.36
5598 6197 5.116882 GCCATTTAGAGTCAGTATTCCGTT 58.883 41.667 0.00 0.00 0.00 4.44
5601 6200 7.441458 GCCATTTAGAGTCAGTATTCCGTTTAT 59.559 37.037 0.00 0.00 0.00 1.40
5602 6201 8.979574 CCATTTAGAGTCAGTATTCCGTTTATC 58.020 37.037 0.00 0.00 0.00 1.75
5605 6204 4.097437 AGAGTCAGTATTCCGTTTATCGCA 59.903 41.667 0.00 0.00 38.35 5.10
5606 6205 4.945246 AGTCAGTATTCCGTTTATCGCAT 58.055 39.130 0.00 0.00 38.35 4.73
5642 6242 8.788813 CAATGTTATTTACGAAGCTGTTGATTC 58.211 33.333 0.00 0.00 35.45 2.52
5643 6243 7.667043 TGTTATTTACGAAGCTGTTGATTCT 57.333 32.000 0.00 0.00 36.54 2.40
5645 6245 7.602644 TGTTATTTACGAAGCTGTTGATTCTCT 59.397 33.333 0.00 0.00 36.54 3.10
5651 6251 5.164233 CGAAGCTGTTGATTCTCTCTTGTA 58.836 41.667 0.00 0.00 36.54 2.41
5654 6254 6.842437 AGCTGTTGATTCTCTCTTGTACTA 57.158 37.500 0.00 0.00 0.00 1.82
5665 6265 5.658634 TCTCTCTTGTACTATGCACCAGATT 59.341 40.000 4.22 0.00 0.00 2.40
5667 6267 6.341316 TCTCTTGTACTATGCACCAGATTTC 58.659 40.000 4.22 0.00 0.00 2.17
5671 6271 5.125356 TGTACTATGCACCAGATTTCATGG 58.875 41.667 4.22 0.00 43.87 3.66
5697 6297 4.006319 GGATTATCCCAGATGTAGCTTGC 58.994 47.826 0.00 0.00 0.00 4.01
5698 6298 3.492102 TTATCCCAGATGTAGCTTGCC 57.508 47.619 0.00 0.00 0.00 4.52
5699 6299 1.516110 ATCCCAGATGTAGCTTGCCT 58.484 50.000 0.00 0.00 0.00 4.75
5700 6300 0.543277 TCCCAGATGTAGCTTGCCTG 59.457 55.000 0.00 0.00 0.00 4.85
5701 6301 0.254178 CCCAGATGTAGCTTGCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
5702 6302 1.661341 CCAGATGTAGCTTGCCTGTC 58.339 55.000 0.00 0.00 0.00 3.51
5703 6303 1.284657 CAGATGTAGCTTGCCTGTCG 58.715 55.000 0.00 0.00 0.00 4.35
5704 6304 0.898320 AGATGTAGCTTGCCTGTCGT 59.102 50.000 0.00 0.00 0.00 4.34
5705 6305 1.134965 AGATGTAGCTTGCCTGTCGTC 60.135 52.381 0.00 0.00 0.00 4.20
5706 6306 0.898320 ATGTAGCTTGCCTGTCGTCT 59.102 50.000 0.00 0.00 0.00 4.18
5707 6307 0.038251 TGTAGCTTGCCTGTCGTCTG 60.038 55.000 0.00 0.00 0.00 3.51
5708 6308 0.038159 GTAGCTTGCCTGTCGTCTGT 60.038 55.000 0.00 0.00 0.00 3.41
5710 6310 2.375766 GCTTGCCTGTCGTCTGTCG 61.376 63.158 0.00 0.00 41.41 4.35
5711 6311 1.285950 CTTGCCTGTCGTCTGTCGA 59.714 57.895 0.00 0.00 46.83 4.20
5731 6341 4.097135 TCGACTTTCAACAGGAAAAATGCA 59.903 37.500 0.00 0.00 44.52 3.96
5745 6383 3.947910 AAATGCATGTGGAAACAGAGG 57.052 42.857 0.00 0.00 44.46 3.69
5750 6388 3.084039 GCATGTGGAAACAGAGGAATGA 58.916 45.455 0.00 0.00 44.46 2.57
5756 6394 5.598005 TGTGGAAACAGAGGAATGACATTTT 59.402 36.000 1.39 0.00 44.46 1.82
5758 6396 6.642540 GTGGAAACAGAGGAATGACATTTTTC 59.357 38.462 1.39 7.09 44.46 2.29
5780 6418 2.182842 GGGCGATGCATGTGGTCTC 61.183 63.158 2.46 0.00 0.00 3.36
5783 6421 1.756375 GCGATGCATGTGGTCTCGTC 61.756 60.000 2.46 0.00 0.00 4.20
5811 6449 0.035725 CTCTGGCACATCTGGAAGCA 60.036 55.000 0.00 0.00 38.20 3.91
5812 6450 0.321919 TCTGGCACATCTGGAAGCAC 60.322 55.000 0.00 0.00 38.20 4.40
5824 6462 3.237268 TGGAAGCACCAATGTTAACCT 57.763 42.857 2.48 0.00 46.75 3.50
5834 6472 0.323725 ATGTTAACCTGCTGCTGGGG 60.324 55.000 26.30 15.73 0.00 4.96
5835 6473 1.074951 GTTAACCTGCTGCTGGGGT 59.925 57.895 26.30 17.04 34.47 4.95
5836 6474 0.539669 GTTAACCTGCTGCTGGGGTT 60.540 55.000 26.30 23.46 44.33 4.11
5837 6475 0.251165 TTAACCTGCTGCTGGGGTTC 60.251 55.000 26.30 0.00 41.69 3.62
5838 6476 2.463589 TAACCTGCTGCTGGGGTTCG 62.464 60.000 26.30 3.94 41.69 3.95
5855 6502 3.626924 GGCCACAGACCCTGTCGT 61.627 66.667 0.00 0.00 43.43 4.34
5868 6515 2.110213 GTCGTGGTGGTCAGGCAA 59.890 61.111 0.00 0.00 0.00 4.52
5891 6538 5.431765 ACTGTTGAAGACTGTTCACTGAAT 58.568 37.500 0.00 0.00 37.14 2.57
5892 6539 5.525378 ACTGTTGAAGACTGTTCACTGAATC 59.475 40.000 0.00 0.00 37.14 2.52
5894 6541 5.525012 TGTTGAAGACTGTTCACTGAATCAG 59.475 40.000 8.98 8.98 37.52 2.90
5895 6542 4.635223 TGAAGACTGTTCACTGAATCAGG 58.365 43.478 15.38 3.94 35.51 3.86
5896 6543 3.051081 AGACTGTTCACTGAATCAGGC 57.949 47.619 15.38 16.40 35.51 4.85
5897 6544 2.636893 AGACTGTTCACTGAATCAGGCT 59.363 45.455 15.38 17.41 35.69 4.58
5899 6546 1.467734 CTGTTCACTGAATCAGGCTGC 59.532 52.381 15.38 3.07 35.51 5.25
5901 6548 1.736681 GTTCACTGAATCAGGCTGCTC 59.263 52.381 15.38 9.46 35.51 4.26
5902 6549 1.273759 TCACTGAATCAGGCTGCTCT 58.726 50.000 15.38 0.00 35.51 4.09
5903 6550 1.066358 TCACTGAATCAGGCTGCTCTG 60.066 52.381 15.38 14.29 35.51 3.35
5904 6551 0.982704 ACTGAATCAGGCTGCTCTGT 59.017 50.000 15.38 14.89 35.51 3.41
5906 6553 2.568956 ACTGAATCAGGCTGCTCTGTTA 59.431 45.455 15.38 0.00 35.51 2.41
5907 6554 3.008375 ACTGAATCAGGCTGCTCTGTTAA 59.992 43.478 15.38 0.00 35.51 2.01
5910 6557 5.012239 TGAATCAGGCTGCTCTGTTAATTT 58.988 37.500 10.34 5.82 36.25 1.82
5954 6601 5.574891 TTTTTGCAGTGTTTCTTCAGCTA 57.425 34.783 0.00 0.00 0.00 3.32
5984 6631 6.661377 AGCAACGATATGTATCTATCTGGAGT 59.339 38.462 0.00 0.00 0.00 3.85
5988 6635 8.871629 ACGATATGTATCTATCTGGAGTCTTT 57.128 34.615 0.00 0.00 0.00 2.52
6002 6649 2.963498 GTCTTTTGACGCCTGTTACC 57.037 50.000 0.00 0.00 39.89 2.85
6006 6653 0.878416 TTTGACGCCTGTTACCATGC 59.122 50.000 0.00 0.00 0.00 4.06
6010 6657 1.873165 CGCCTGTTACCATGCGTTT 59.127 52.632 1.84 0.00 46.44 3.60
6012 6659 0.878416 GCCTGTTACCATGCGTTTCA 59.122 50.000 0.00 0.00 0.00 2.69
6032 6679 6.477053 TTCATTTTCAATGAAACTGGGACA 57.523 33.333 20.76 4.31 35.35 4.02
6054 6701 2.406616 CGTGGGCCTTTTGATCGGG 61.407 63.158 4.53 0.00 0.00 5.14
6056 6703 0.898326 GTGGGCCTTTTGATCGGGTT 60.898 55.000 4.53 0.00 0.00 4.11
6060 6707 2.563620 GGGCCTTTTGATCGGGTTTTTA 59.436 45.455 0.84 0.00 0.00 1.52
6061 6708 3.007074 GGGCCTTTTGATCGGGTTTTTAA 59.993 43.478 0.84 0.00 0.00 1.52
6076 6723 8.775527 TCGGGTTTTTAAATTTTTATTTCCAGC 58.224 29.630 0.00 0.00 0.00 4.85
6085 6732 8.770438 AAATTTTTATTTCCAGCGCAATCTAA 57.230 26.923 11.47 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.226606 CGGAAAATGTATGCCCTAGATTAAATA 57.773 33.333 0.00 0.00 0.00 1.40
14 15 7.942341 TCGGAAAATGTATGCCCTAGATTAAAT 59.058 33.333 0.00 0.00 0.00 1.40
15 16 7.284074 TCGGAAAATGTATGCCCTAGATTAAA 58.716 34.615 0.00 0.00 0.00 1.52
16 17 6.833041 TCGGAAAATGTATGCCCTAGATTAA 58.167 36.000 0.00 0.00 0.00 1.40
17 18 6.428083 TCGGAAAATGTATGCCCTAGATTA 57.572 37.500 0.00 0.00 0.00 1.75
18 19 5.304686 TCGGAAAATGTATGCCCTAGATT 57.695 39.130 0.00 0.00 0.00 2.40
19 20 4.974645 TCGGAAAATGTATGCCCTAGAT 57.025 40.909 0.00 0.00 0.00 1.98
20 21 4.764050 TTCGGAAAATGTATGCCCTAGA 57.236 40.909 0.00 0.00 0.00 2.43
21 22 6.183360 ACAAATTCGGAAAATGTATGCCCTAG 60.183 38.462 9.26 0.00 0.00 3.02
22 23 5.654650 ACAAATTCGGAAAATGTATGCCCTA 59.345 36.000 9.26 0.00 0.00 3.53
23 24 4.466015 ACAAATTCGGAAAATGTATGCCCT 59.534 37.500 9.26 0.00 0.00 5.19
24 25 4.754322 ACAAATTCGGAAAATGTATGCCC 58.246 39.130 9.26 0.00 0.00 5.36
25 26 9.522804 TTATAACAAATTCGGAAAATGTATGCC 57.477 29.630 10.84 0.00 0.00 4.40
66 67 8.754080 TCCTTTGTGGTCTCAAAATTAGAAAAA 58.246 29.630 0.91 0.00 36.96 1.94
67 68 8.194769 GTCCTTTGTGGTCTCAAAATTAGAAAA 58.805 33.333 0.91 0.00 36.96 2.29
68 69 7.340743 TGTCCTTTGTGGTCTCAAAATTAGAAA 59.659 33.333 0.91 0.00 36.96 2.52
69 70 6.831353 TGTCCTTTGTGGTCTCAAAATTAGAA 59.169 34.615 0.91 0.00 36.96 2.10
70 71 6.361433 TGTCCTTTGTGGTCTCAAAATTAGA 58.639 36.000 0.91 0.00 36.96 2.10
71 72 6.294176 CCTGTCCTTTGTGGTCTCAAAATTAG 60.294 42.308 0.91 0.00 36.96 1.73
72 73 5.534654 CCTGTCCTTTGTGGTCTCAAAATTA 59.465 40.000 0.91 0.00 36.96 1.40
73 74 4.342092 CCTGTCCTTTGTGGTCTCAAAATT 59.658 41.667 0.91 0.00 36.96 1.82
74 75 3.891366 CCTGTCCTTTGTGGTCTCAAAAT 59.109 43.478 0.91 0.00 36.96 1.82
75 76 3.287222 CCTGTCCTTTGTGGTCTCAAAA 58.713 45.455 0.91 0.00 36.96 2.44
76 77 2.422803 CCCTGTCCTTTGTGGTCTCAAA 60.423 50.000 0.00 0.00 37.07 2.69
77 78 1.142870 CCCTGTCCTTTGTGGTCTCAA 59.857 52.381 0.00 0.00 37.07 3.02
78 79 0.764890 CCCTGTCCTTTGTGGTCTCA 59.235 55.000 0.00 0.00 37.07 3.27
79 80 0.765510 ACCCTGTCCTTTGTGGTCTC 59.234 55.000 0.00 0.00 37.07 3.36
80 81 0.474184 CACCCTGTCCTTTGTGGTCT 59.526 55.000 0.00 0.00 37.07 3.85
81 82 0.537371 CCACCCTGTCCTTTGTGGTC 60.537 60.000 0.00 0.00 42.61 4.02
82 83 0.991355 TCCACCCTGTCCTTTGTGGT 60.991 55.000 7.34 0.00 46.59 4.16
83 84 4.500265 CCACCCTGTCCTTTGTGG 57.500 61.111 0.00 0.00 42.01 4.17
84 85 0.537371 GGTCCACCCTGTCCTTTGTG 60.537 60.000 0.00 0.00 0.00 3.33
85 86 0.697854 AGGTCCACCCTGTCCTTTGT 60.698 55.000 0.00 0.00 44.08 2.83
86 87 1.279271 CTAGGTCCACCCTGTCCTTTG 59.721 57.143 0.00 0.00 45.81 2.77
87 88 1.657804 CTAGGTCCACCCTGTCCTTT 58.342 55.000 0.00 0.00 45.81 3.11
88 89 0.910088 GCTAGGTCCACCCTGTCCTT 60.910 60.000 0.00 0.00 45.81 3.36
89 90 1.306226 GCTAGGTCCACCCTGTCCT 60.306 63.158 0.00 0.00 45.81 3.85
90 91 2.722201 CGCTAGGTCCACCCTGTCC 61.722 68.421 0.00 0.00 45.81 4.02
91 92 1.542187 AACGCTAGGTCCACCCTGTC 61.542 60.000 0.00 0.00 45.81 3.51
92 93 1.125711 AAACGCTAGGTCCACCCTGT 61.126 55.000 0.00 0.00 45.81 4.00
93 94 0.899720 TAAACGCTAGGTCCACCCTG 59.100 55.000 0.00 0.00 45.81 4.45
95 96 1.188863 TCTAAACGCTAGGTCCACCC 58.811 55.000 0.00 0.00 36.42 4.61
96 97 3.323751 TTTCTAAACGCTAGGTCCACC 57.676 47.619 0.00 0.00 0.00 4.61
116 117 4.292306 AGACCCAGGTCCATCACTATTTTT 59.708 41.667 13.27 0.00 45.59 1.94
117 118 3.852578 AGACCCAGGTCCATCACTATTTT 59.147 43.478 13.27 0.00 45.59 1.82
118 119 3.464828 AGACCCAGGTCCATCACTATTT 58.535 45.455 13.27 0.00 45.59 1.40
119 120 3.136641 AGACCCAGGTCCATCACTATT 57.863 47.619 13.27 0.00 45.59 1.73
120 121 2.877154 AGACCCAGGTCCATCACTAT 57.123 50.000 13.27 0.00 45.59 2.12
121 122 2.585900 ACTAGACCCAGGTCCATCACTA 59.414 50.000 13.27 0.00 45.59 2.74
122 123 1.362932 ACTAGACCCAGGTCCATCACT 59.637 52.381 13.27 0.00 45.59 3.41
123 124 1.482593 CACTAGACCCAGGTCCATCAC 59.517 57.143 13.27 0.00 45.59 3.06
124 125 1.361197 TCACTAGACCCAGGTCCATCA 59.639 52.381 13.27 0.00 45.59 3.07
125 126 1.757699 GTCACTAGACCCAGGTCCATC 59.242 57.143 13.27 0.00 45.59 3.51
126 127 1.867363 GTCACTAGACCCAGGTCCAT 58.133 55.000 13.27 0.00 45.59 3.41
127 128 3.376082 GTCACTAGACCCAGGTCCA 57.624 57.895 13.27 0.00 45.59 4.02
136 137 3.983044 AATTGTCCAGGGTCACTAGAC 57.017 47.619 0.00 0.00 44.21 2.59
137 138 4.104102 ACAAAATTGTCCAGGGTCACTAGA 59.896 41.667 0.00 0.00 36.50 2.43
138 139 4.398319 ACAAAATTGTCCAGGGTCACTAG 58.602 43.478 0.00 0.00 36.50 2.57
139 140 4.447138 ACAAAATTGTCCAGGGTCACTA 57.553 40.909 0.00 0.00 36.50 2.74
140 141 3.312736 ACAAAATTGTCCAGGGTCACT 57.687 42.857 0.00 0.00 36.50 3.41
151 152 5.300792 AGTGGAATAACGTGGACAAAATTGT 59.699 36.000 0.00 0.00 45.65 2.71
152 153 5.768317 AGTGGAATAACGTGGACAAAATTG 58.232 37.500 0.00 0.00 0.00 2.32
153 154 6.039941 TCAAGTGGAATAACGTGGACAAAATT 59.960 34.615 0.00 0.00 31.42 1.82
154 155 5.533154 TCAAGTGGAATAACGTGGACAAAAT 59.467 36.000 0.00 0.00 31.42 1.82
155 156 4.882427 TCAAGTGGAATAACGTGGACAAAA 59.118 37.500 0.00 0.00 31.42 2.44
156 157 4.452825 TCAAGTGGAATAACGTGGACAAA 58.547 39.130 0.00 0.00 31.42 2.83
157 158 4.074627 TCAAGTGGAATAACGTGGACAA 57.925 40.909 0.00 0.00 31.42 3.18
158 159 3.755112 TCAAGTGGAATAACGTGGACA 57.245 42.857 0.00 0.00 31.42 4.02
159 160 5.427036 TTTTCAAGTGGAATAACGTGGAC 57.573 39.130 0.00 0.00 34.91 4.02
214 215 7.255104 GTGAACCACAAGAATGAAGTGTCATTA 60.255 37.037 2.06 0.00 42.66 1.90
215 216 6.460123 GTGAACCACAAGAATGAAGTGTCATT 60.460 38.462 1.66 1.66 43.87 2.57
216 217 5.009010 GTGAACCACAAGAATGAAGTGTCAT 59.991 40.000 0.00 0.00 39.04 3.06
217 218 4.335315 GTGAACCACAAGAATGAAGTGTCA 59.665 41.667 0.00 0.00 34.55 3.58
218 219 4.335315 TGTGAACCACAAGAATGAAGTGTC 59.665 41.667 0.00 0.00 41.69 3.67
219 220 4.269183 TGTGAACCACAAGAATGAAGTGT 58.731 39.130 0.00 0.00 41.69 3.55
220 221 4.898829 TGTGAACCACAAGAATGAAGTG 57.101 40.909 0.00 0.00 41.69 3.16
231 232 6.376299 ACGAGAGTATACTATTGTGAACCACA 59.624 38.462 17.73 0.00 46.88 4.17
232 233 6.793349 ACGAGAGTATACTATTGTGAACCAC 58.207 40.000 17.73 0.00 46.88 4.16
250 251 7.843490 TGGGTTATCTATTTTGAAACGAGAG 57.157 36.000 0.00 0.00 0.00 3.20
251 252 7.881232 AGTTGGGTTATCTATTTTGAAACGAGA 59.119 33.333 0.00 0.00 0.00 4.04
252 253 8.040716 AGTTGGGTTATCTATTTTGAAACGAG 57.959 34.615 0.00 0.00 0.00 4.18
253 254 7.989416 AGTTGGGTTATCTATTTTGAAACGA 57.011 32.000 0.00 0.00 0.00 3.85
254 255 8.911662 CAAAGTTGGGTTATCTATTTTGAAACG 58.088 33.333 0.00 0.00 0.00 3.60
255 256 9.758651 ACAAAGTTGGGTTATCTATTTTGAAAC 57.241 29.630 0.00 0.00 0.00 2.78
258 259 9.802039 AGTACAAAGTTGGGTTATCTATTTTGA 57.198 29.630 0.00 0.00 0.00 2.69
275 276 6.647067 GCAGATGACTCAACTTAGTACAAAGT 59.353 38.462 0.00 0.00 41.46 2.66
276 277 6.870965 AGCAGATGACTCAACTTAGTACAAAG 59.129 38.462 0.00 0.00 0.00 2.77
277 278 6.759272 AGCAGATGACTCAACTTAGTACAAA 58.241 36.000 0.00 0.00 0.00 2.83
278 279 6.346477 AGCAGATGACTCAACTTAGTACAA 57.654 37.500 0.00 0.00 0.00 2.41
279 280 5.105716 GGAGCAGATGACTCAACTTAGTACA 60.106 44.000 0.00 0.00 35.79 2.90
280 281 5.126384 AGGAGCAGATGACTCAACTTAGTAC 59.874 44.000 0.00 0.00 35.79 2.73
281 282 5.265191 AGGAGCAGATGACTCAACTTAGTA 58.735 41.667 0.00 0.00 35.79 1.82
282 283 4.093011 AGGAGCAGATGACTCAACTTAGT 58.907 43.478 0.00 0.00 35.79 2.24
283 284 4.734398 AGGAGCAGATGACTCAACTTAG 57.266 45.455 0.00 0.00 35.79 2.18
284 285 6.132658 AGATAGGAGCAGATGACTCAACTTA 58.867 40.000 0.00 0.00 35.79 2.24
285 286 4.961730 AGATAGGAGCAGATGACTCAACTT 59.038 41.667 0.00 0.00 35.79 2.66
286 287 4.545678 AGATAGGAGCAGATGACTCAACT 58.454 43.478 0.00 0.00 35.79 3.16
287 288 4.935352 AGATAGGAGCAGATGACTCAAC 57.065 45.455 0.00 0.00 35.79 3.18
288 289 4.037327 CGAAGATAGGAGCAGATGACTCAA 59.963 45.833 0.00 0.00 35.79 3.02
289 290 3.567585 CGAAGATAGGAGCAGATGACTCA 59.432 47.826 0.00 0.00 35.79 3.41
290 291 3.818210 TCGAAGATAGGAGCAGATGACTC 59.182 47.826 0.00 0.00 0.00 3.36
291 292 3.826524 TCGAAGATAGGAGCAGATGACT 58.173 45.455 0.00 0.00 0.00 3.41
292 293 4.295051 GTTCGAAGATAGGAGCAGATGAC 58.705 47.826 0.00 0.00 35.04 3.06
293 294 3.003793 CGTTCGAAGATAGGAGCAGATGA 59.996 47.826 0.00 0.00 35.04 2.92
294 295 3.304257 CGTTCGAAGATAGGAGCAGATG 58.696 50.000 0.00 0.00 35.04 2.90
295 296 2.294791 CCGTTCGAAGATAGGAGCAGAT 59.705 50.000 0.00 0.00 35.86 2.90
296 297 1.676529 CCGTTCGAAGATAGGAGCAGA 59.323 52.381 0.00 0.00 35.86 4.26
297 298 1.676529 TCCGTTCGAAGATAGGAGCAG 59.323 52.381 0.00 0.00 37.50 4.24
298 299 1.758936 TCCGTTCGAAGATAGGAGCA 58.241 50.000 0.00 0.00 37.50 4.26
301 302 3.310774 CGTTACTCCGTTCGAAGATAGGA 59.689 47.826 0.00 4.79 39.48 2.94
302 303 3.547613 CCGTTACTCCGTTCGAAGATAGG 60.548 52.174 0.00 0.00 35.04 2.57
303 304 3.310774 TCCGTTACTCCGTTCGAAGATAG 59.689 47.826 0.00 0.00 35.04 2.08
304 305 3.270027 TCCGTTACTCCGTTCGAAGATA 58.730 45.455 0.00 0.00 35.04 1.98
305 306 2.086869 TCCGTTACTCCGTTCGAAGAT 58.913 47.619 0.00 0.00 35.04 2.40
306 307 1.466167 CTCCGTTACTCCGTTCGAAGA 59.534 52.381 0.00 0.00 0.00 2.87
307 308 1.467035 CCTCCGTTACTCCGTTCGAAG 60.467 57.143 0.00 0.00 0.00 3.79
308 309 0.523072 CCTCCGTTACTCCGTTCGAA 59.477 55.000 0.00 0.00 0.00 3.71
309 310 1.308069 CCCTCCGTTACTCCGTTCGA 61.308 60.000 0.00 0.00 0.00 3.71
310 311 1.138247 CCCTCCGTTACTCCGTTCG 59.862 63.158 0.00 0.00 0.00 3.95
311 312 0.455005 CTCCCTCCGTTACTCCGTTC 59.545 60.000 0.00 0.00 0.00 3.95
312 313 0.251519 ACTCCCTCCGTTACTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
313 314 0.620556 TACTCCCTCCGTTACTCCGT 59.379 55.000 0.00 0.00 0.00 4.69
314 315 1.134280 TCTACTCCCTCCGTTACTCCG 60.134 57.143 0.00 0.00 0.00 4.63
315 316 2.725221 TCTACTCCCTCCGTTACTCC 57.275 55.000 0.00 0.00 0.00 3.85
316 317 5.807909 AGATATCTACTCCCTCCGTTACTC 58.192 45.833 2.53 0.00 0.00 2.59
317 318 5.280624 GGAGATATCTACTCCCTCCGTTACT 60.281 48.000 7.79 0.00 45.64 2.24
318 319 4.943093 GGAGATATCTACTCCCTCCGTTAC 59.057 50.000 7.79 0.00 45.64 2.50
319 320 5.176741 GGAGATATCTACTCCCTCCGTTA 57.823 47.826 7.79 0.00 45.64 3.18
320 321 4.036941 GGAGATATCTACTCCCTCCGTT 57.963 50.000 7.79 0.00 45.64 4.44
321 322 3.724732 GGAGATATCTACTCCCTCCGT 57.275 52.381 7.79 0.00 45.64 4.69
328 329 5.584913 TGAGGGAATGGGAGATATCTACTC 58.415 45.833 14.76 4.66 0.00 2.59
329 330 5.623551 TGAGGGAATGGGAGATATCTACT 57.376 43.478 14.76 0.00 0.00 2.57
330 331 6.126911 GGATTGAGGGAATGGGAGATATCTAC 60.127 46.154 6.38 6.38 0.00 2.59
331 332 5.966935 GGATTGAGGGAATGGGAGATATCTA 59.033 44.000 4.89 0.00 0.00 1.98
332 333 4.787534 GGATTGAGGGAATGGGAGATATCT 59.212 45.833 4.47 4.47 0.00 1.98
333 334 4.080072 GGGATTGAGGGAATGGGAGATATC 60.080 50.000 0.00 0.00 0.00 1.63
334 335 3.854994 GGGATTGAGGGAATGGGAGATAT 59.145 47.826 0.00 0.00 0.00 1.63
335 336 3.260205 GGGATTGAGGGAATGGGAGATA 58.740 50.000 0.00 0.00 0.00 1.98
336 337 2.068977 GGGATTGAGGGAATGGGAGAT 58.931 52.381 0.00 0.00 0.00 2.75
337 338 1.274943 TGGGATTGAGGGAATGGGAGA 60.275 52.381 0.00 0.00 0.00 3.71
338 339 1.133668 GTGGGATTGAGGGAATGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
339 340 0.926293 GTGGGATTGAGGGAATGGGA 59.074 55.000 0.00 0.00 0.00 4.37
340 341 0.466189 CGTGGGATTGAGGGAATGGG 60.466 60.000 0.00 0.00 0.00 4.00
341 342 0.466189 CCGTGGGATTGAGGGAATGG 60.466 60.000 0.00 0.00 0.00 3.16
342 343 0.466189 CCCGTGGGATTGAGGGAATG 60.466 60.000 0.00 0.00 46.64 2.67
343 344 1.922821 CCCGTGGGATTGAGGGAAT 59.077 57.895 0.00 0.00 46.64 3.01
344 345 3.410541 CCCGTGGGATTGAGGGAA 58.589 61.111 0.00 0.00 46.64 3.97
397 398 5.581605 GCTTGAATCAAGAAAACACAGTGA 58.418 37.500 25.54 0.00 43.42 3.41
399 400 4.335315 TCGCTTGAATCAAGAAAACACAGT 59.665 37.500 25.54 0.00 43.42 3.55
401 402 4.789481 GCTCGCTTGAATCAAGAAAACACA 60.789 41.667 25.54 0.97 43.42 3.72
408 409 1.442769 GGTGCTCGCTTGAATCAAGA 58.557 50.000 25.54 6.00 43.42 3.02
442 443 2.041405 GGAGGAGGTGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
445 446 0.336737 GAAGAGGAGGAGGTGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
519 520 0.179000 CTTGGTCCCTCAATCCTCCG 59.821 60.000 0.00 0.00 0.00 4.63
527 528 4.649705 TCCCGGCTTGGTCCCTCA 62.650 66.667 0.00 0.00 35.15 3.86
622 624 0.250209 ATGTGGATCTGGATGCGCTC 60.250 55.000 9.73 3.37 39.85 5.03
652 654 0.395312 TGTTCTTGACTTCCGGGGAC 59.605 55.000 0.00 0.00 0.00 4.46
751 765 1.191647 GGCGCATACGACGAATTTAGG 59.808 52.381 10.83 0.00 43.93 2.69
815 833 5.163519 CCATTATTAGAACTTTGCAGGGGTG 60.164 44.000 0.00 0.00 0.00 4.61
816 834 4.956075 CCATTATTAGAACTTTGCAGGGGT 59.044 41.667 0.00 0.00 0.00 4.95
817 835 4.342092 CCCATTATTAGAACTTTGCAGGGG 59.658 45.833 0.00 0.00 0.00 4.79
818 836 4.342092 CCCCATTATTAGAACTTTGCAGGG 59.658 45.833 0.00 0.00 0.00 4.45
819 837 4.202151 GCCCCATTATTAGAACTTTGCAGG 60.202 45.833 0.00 0.00 0.00 4.85
848 866 4.160252 GTGTTCTTCCCCAAATATGCATGT 59.840 41.667 10.16 0.00 0.00 3.21
893 917 0.811219 CTTCAATGGCATCTCCGCGA 60.811 55.000 8.23 0.00 37.80 5.87
896 920 1.332997 GCTTCTTCAATGGCATCTCCG 59.667 52.381 0.00 0.00 37.80 4.63
902 926 0.899717 GTGGGGCTTCTTCAATGGCA 60.900 55.000 0.00 0.00 0.00 4.92
981 1009 2.009681 TCTTGTGAGCAGAGGTACCA 57.990 50.000 15.94 0.00 0.00 3.25
1026 1054 5.852755 GCAAATAAGCAAGCAATTTTTCACC 59.147 36.000 0.00 0.00 0.00 4.02
1040 1069 2.806434 ACATGTGGGAGCAAATAAGCA 58.194 42.857 0.00 0.00 36.85 3.91
1059 1088 2.492088 GGAAGGAAACAATGCCTGGTAC 59.508 50.000 0.00 0.00 34.00 3.34
1063 1092 2.675889 GCATGGAAGGAAACAATGCCTG 60.676 50.000 0.00 0.00 34.00 4.85
1064 1093 1.551883 GCATGGAAGGAAACAATGCCT 59.448 47.619 0.00 0.00 35.61 4.75
1113 1177 4.288366 TGGAGAGGACAAATATGGTGTGAA 59.712 41.667 0.00 0.00 0.00 3.18
1405 1528 2.901264 CTCGTACTTGAACTCGTCGAAC 59.099 50.000 0.00 0.00 0.00 3.95
1447 1570 0.253327 CCTTGTAGTGCCCCTCCTTC 59.747 60.000 0.00 0.00 0.00 3.46
1552 1675 0.674895 GAACCTCAATGGCTCGCACT 60.675 55.000 0.00 0.00 40.22 4.40
1558 1681 1.915141 CCACAAGAACCTCAATGGCT 58.085 50.000 0.00 0.00 40.22 4.75
1570 1693 3.149196 GTCCTTCATTTCAGCCACAAGA 58.851 45.455 0.00 0.00 0.00 3.02
1620 1746 2.406616 CGCCACTGGTTGTATGCCC 61.407 63.158 0.00 0.00 0.00 5.36
2682 3082 9.831737 GCATAAGATCATGGATTTTACATGTAC 57.168 33.333 4.68 0.00 44.57 2.90
2783 3183 3.454447 TGACTTGGTTCCTCAGTTGAGAA 59.546 43.478 10.64 1.22 44.74 2.87
2897 3297 2.158623 ACAGAAGTGTTTGGATGGCTGA 60.159 45.455 0.00 0.00 30.30 4.26
3268 3707 2.680805 GCAATTAGAGCCACTACCTGCA 60.681 50.000 12.23 0.00 38.12 4.41
3478 3944 4.083961 GGTTTAAGTTCCTCGAGCACTTTC 60.084 45.833 24.94 17.56 32.88 2.62
3610 4076 5.221244 ACCACTAAAGAACCATTGCAGTTTC 60.221 40.000 0.00 0.00 0.00 2.78
3726 4195 1.689813 TCACCACTTCTCCTTGCGTTA 59.310 47.619 0.00 0.00 0.00 3.18
3865 4348 5.241662 AGCTTTGGTGATTCAACTCTAGTC 58.758 41.667 2.91 0.00 0.00 2.59
4471 4978 2.906389 TGCTATACTAGATGGCCCTTGG 59.094 50.000 0.00 0.00 0.00 3.61
4521 5049 4.076394 CGTTTCTAAATTCTCCACCCCAA 58.924 43.478 0.00 0.00 0.00 4.12
4542 5070 7.220300 AGCTATGACACTCGACTAATTTTAACG 59.780 37.037 0.00 0.00 0.00 3.18
4543 5071 8.408743 AGCTATGACACTCGACTAATTTTAAC 57.591 34.615 0.00 0.00 0.00 2.01
4582 5110 3.066233 GAGGGACGAAGGGAGACGC 62.066 68.421 0.00 0.00 0.00 5.19
4584 5112 0.533032 CTTGAGGGACGAAGGGAGAC 59.467 60.000 0.00 0.00 0.00 3.36
4591 5119 2.824341 GTCTAGAACCTTGAGGGACGAA 59.176 50.000 0.00 0.00 40.27 3.85
4631 5159 4.202141 GGAGTGAGATTCCAGAGATGTCAG 60.202 50.000 0.00 0.00 34.74 3.51
4677 5205 2.054799 TGCAACTCCAAAGGTAGAGGT 58.945 47.619 0.00 0.00 34.27 3.85
4716 5244 2.069430 TATGCTCGTGGCCCATCCA 61.069 57.895 0.00 0.00 44.18 3.41
4728 5256 7.049799 AGACTTTGGAGATAAGAGTATGCTC 57.950 40.000 2.03 2.03 41.94 4.26
4748 5276 5.940470 CAGGGCAGTTCTTAATGTAAAGACT 59.060 40.000 0.00 0.00 35.25 3.24
4781 5309 2.399356 GCAGGCTTGTAGGGAACGC 61.399 63.158 0.00 0.00 0.00 4.84
4784 5312 1.002134 GCTGCAGGCTTGTAGGGAA 60.002 57.895 17.12 0.00 37.49 3.97
4829 5357 8.432013 ACTTCCATAATAATGAGCATCTGTGTA 58.568 33.333 0.00 0.00 34.84 2.90
4833 5361 8.449397 GCTTACTTCCATAATAATGAGCATCTG 58.551 37.037 0.00 0.00 34.84 2.90
4938 5484 1.463056 TCATTTTTCTGCCGTGCTACG 59.537 47.619 2.27 2.27 42.11 3.51
4943 5489 2.420628 TGCTTCATTTTTCTGCCGTG 57.579 45.000 0.00 0.00 0.00 4.94
4999 5557 7.697710 TGCGCTTAGAAGAACATCAATAAATTG 59.302 33.333 9.73 0.00 39.10 2.32
5044 5602 1.134995 GGCCTTGGCTTATCTGCAAAC 60.135 52.381 11.71 0.00 34.04 2.93
5122 5680 3.808174 GTCCCGTGATTCTGTTTATAGCC 59.192 47.826 0.00 0.00 0.00 3.93
5183 5755 0.759959 TCAAAGGTTCCCGCAGTGTA 59.240 50.000 0.00 0.00 0.00 2.90
5186 5758 1.247567 CAATCAAAGGTTCCCGCAGT 58.752 50.000 0.00 0.00 0.00 4.40
5218 5790 5.178067 CCACCAGCTTAATTCTTTTTGCAAG 59.822 40.000 0.00 0.00 0.00 4.01
5238 5810 4.886579 AGAATTCTGCAAACAATTCCACC 58.113 39.130 7.30 0.49 39.06 4.61
5268 5840 3.827817 TCTCTCTTTCCAGTCCCTGTA 57.172 47.619 0.00 0.00 0.00 2.74
5273 5845 4.502962 CAAGTGATCTCTCTTTCCAGTCC 58.497 47.826 0.00 0.00 0.00 3.85
5312 5884 1.073722 CTTGTGGGCCTCTCAGCAA 59.926 57.895 4.53 0.00 0.00 3.91
5316 5888 0.550914 AACAACTTGTGGGCCTCTCA 59.449 50.000 4.53 0.00 0.00 3.27
5317 5889 0.954452 CAACAACTTGTGGGCCTCTC 59.046 55.000 4.53 0.00 0.00 3.20
5318 5890 1.109323 GCAACAACTTGTGGGCCTCT 61.109 55.000 4.53 0.00 0.00 3.69
5319 5891 1.363807 GCAACAACTTGTGGGCCTC 59.636 57.895 4.53 0.49 0.00 4.70
5320 5892 2.133641 GGCAACAACTTGTGGGCCT 61.134 57.895 22.09 0.00 43.89 5.19
5363 5937 5.406780 CCAATAGTATTAGAAGCGCTTCCTG 59.593 44.000 39.16 22.86 40.33 3.86
5366 5940 4.991687 AGCCAATAGTATTAGAAGCGCTTC 59.008 41.667 37.06 37.06 39.78 3.86
5367 5941 4.962155 AGCCAATAGTATTAGAAGCGCTT 58.038 39.130 25.35 25.35 0.00 4.68
5368 5942 4.608948 AGCCAATAGTATTAGAAGCGCT 57.391 40.909 2.64 2.64 0.00 5.92
5369 5943 6.100004 TGATAGCCAATAGTATTAGAAGCGC 58.900 40.000 0.00 0.00 0.00 5.92
5370 5944 8.709386 ATTGATAGCCAATAGTATTAGAAGCG 57.291 34.615 0.00 0.00 43.30 4.68
5371 5945 9.658799 TGATTGATAGCCAATAGTATTAGAAGC 57.341 33.333 0.00 0.00 45.00 3.86
5380 5954 9.584008 AGAATGAAATGATTGATAGCCAATAGT 57.416 29.630 0.00 0.00 45.00 2.12
5408 5982 4.722526 TTCCAACAAGATCTTCTGGGAA 57.277 40.909 23.88 19.53 0.00 3.97
5434 6011 9.059260 GTAAACAGAGGTGGAAAAATACAAGTA 57.941 33.333 0.00 0.00 0.00 2.24
5436 6013 7.230712 AGGTAAACAGAGGTGGAAAAATACAAG 59.769 37.037 0.00 0.00 0.00 3.16
5438 6015 6.607019 AGGTAAACAGAGGTGGAAAAATACA 58.393 36.000 0.00 0.00 0.00 2.29
5439 6016 7.148523 CGTAGGTAAACAGAGGTGGAAAAATAC 60.149 40.741 0.00 0.00 0.00 1.89
5441 6018 5.704053 CGTAGGTAAACAGAGGTGGAAAAAT 59.296 40.000 0.00 0.00 0.00 1.82
5442 6019 5.058490 CGTAGGTAAACAGAGGTGGAAAAA 58.942 41.667 0.00 0.00 0.00 1.94
5444 6021 4.261578 CGTAGGTAAACAGAGGTGGAAA 57.738 45.455 0.00 0.00 0.00 3.13
5445 6022 3.947910 CGTAGGTAAACAGAGGTGGAA 57.052 47.619 0.00 0.00 0.00 3.53
5464 6041 0.179100 CAGTGCCTAGGACATGACCG 60.179 60.000 14.75 0.00 34.73 4.79
5474 6051 3.496130 CACAGAAAACTGACAGTGCCTAG 59.504 47.826 9.33 2.65 0.00 3.02
5476 6053 2.292267 CACAGAAAACTGACAGTGCCT 58.708 47.619 9.33 3.96 0.00 4.75
5478 6055 2.111041 GCACAGAAAACTGACAGTGC 57.889 50.000 9.33 3.33 44.31 4.40
5479 6056 3.496130 CCTAGCACAGAAAACTGACAGTG 59.504 47.826 9.33 0.00 0.00 3.66
5480 6057 3.733337 CCTAGCACAGAAAACTGACAGT 58.267 45.455 1.07 1.07 0.00 3.55
5481 6058 2.481952 GCCTAGCACAGAAAACTGACAG 59.518 50.000 0.00 0.00 0.00 3.51
5483 6060 2.494059 TGCCTAGCACAGAAAACTGAC 58.506 47.619 0.00 0.00 31.71 3.51
5495 6072 0.107831 AAAACTGACGGTGCCTAGCA 59.892 50.000 0.00 0.00 35.60 3.49
5496 6073 0.796927 GAAAACTGACGGTGCCTAGC 59.203 55.000 0.00 0.00 0.00 3.42
5499 6093 0.180406 ACAGAAAACTGACGGTGCCT 59.820 50.000 0.00 0.00 0.00 4.75
5504 6098 4.976116 GGAATTTCAACAGAAAACTGACGG 59.024 41.667 0.00 0.00 35.12 4.79
5505 6099 4.670621 CGGAATTTCAACAGAAAACTGACG 59.329 41.667 0.00 0.00 35.12 4.35
5515 6109 1.531149 ACTGCGACGGAATTTCAACAG 59.469 47.619 0.00 0.00 0.00 3.16
5541 6137 9.562408 TGTTTATACAGGTTCACAGATAAAACA 57.438 29.630 0.00 0.00 0.00 2.83
5613 6212 4.700213 ACAGCTTCGTAAATAACATTGCCT 59.300 37.500 0.00 0.00 0.00 4.75
5628 6228 3.993081 ACAAGAGAGAATCAACAGCTTCG 59.007 43.478 0.00 0.00 37.82 3.79
5642 6242 4.991153 TCTGGTGCATAGTACAAGAGAG 57.009 45.455 0.00 0.00 0.00 3.20
5643 6243 5.939764 AATCTGGTGCATAGTACAAGAGA 57.060 39.130 0.00 0.00 31.95 3.10
5645 6245 6.048732 TGAAATCTGGTGCATAGTACAAGA 57.951 37.500 0.00 0.00 32.91 3.02
5651 6251 4.458397 CTCCATGAAATCTGGTGCATAGT 58.542 43.478 0.00 0.00 35.19 2.12
5654 6254 2.662866 CCTCCATGAAATCTGGTGCAT 58.337 47.619 0.00 0.00 35.19 3.96
5684 6284 1.284657 CGACAGGCAAGCTACATCTG 58.715 55.000 0.00 0.00 0.00 2.90
5689 6289 0.038159 ACAGACGACAGGCAAGCTAC 60.038 55.000 0.00 0.00 0.00 3.58
5691 6291 1.005630 GACAGACGACAGGCAAGCT 60.006 57.895 0.00 0.00 0.00 3.74
5694 6294 3.439008 TCGACAGACGACAGGCAA 58.561 55.556 0.00 0.00 46.45 4.52
5706 6306 5.577835 CATTTTTCCTGTTGAAAGTCGACA 58.422 37.500 19.50 0.00 43.57 4.35
5707 6307 4.441087 GCATTTTTCCTGTTGAAAGTCGAC 59.559 41.667 7.70 7.70 43.57 4.20
5708 6308 4.097135 TGCATTTTTCCTGTTGAAAGTCGA 59.903 37.500 0.00 0.00 43.57 4.20
5710 6310 5.754890 ACATGCATTTTTCCTGTTGAAAGTC 59.245 36.000 0.00 0.00 43.57 3.01
5711 6311 5.524646 CACATGCATTTTTCCTGTTGAAAGT 59.475 36.000 0.00 0.00 43.57 2.66
5712 6312 5.049954 CCACATGCATTTTTCCTGTTGAAAG 60.050 40.000 0.00 0.00 43.57 2.62
5731 6341 4.371624 TGTCATTCCTCTGTTTCCACAT 57.628 40.909 0.00 0.00 30.39 3.21
5745 6383 4.555262 TCGCCCAAAGAAAAATGTCATTC 58.445 39.130 0.00 0.00 0.00 2.67
5750 6388 2.036992 TGCATCGCCCAAAGAAAAATGT 59.963 40.909 0.00 0.00 0.00 2.71
5756 6394 0.527113 CACATGCATCGCCCAAAGAA 59.473 50.000 0.00 0.00 0.00 2.52
5758 6396 1.140161 CCACATGCATCGCCCAAAG 59.860 57.895 0.00 0.00 0.00 2.77
5780 6418 0.888619 TGCCAGAGAACCTGTAGACG 59.111 55.000 0.00 0.00 41.33 4.18
5783 6421 2.499289 AGATGTGCCAGAGAACCTGTAG 59.501 50.000 0.00 0.00 41.33 2.74
5811 6449 1.888512 CAGCAGCAGGTTAACATTGGT 59.111 47.619 8.10 7.97 0.00 3.67
5812 6450 1.203052 CCAGCAGCAGGTTAACATTGG 59.797 52.381 8.10 0.57 0.00 3.16
5834 6472 2.358737 CAGGGTCTGTGGCCGAAC 60.359 66.667 0.00 0.00 0.00 3.95
5835 6473 2.847234 ACAGGGTCTGTGGCCGAA 60.847 61.111 0.00 0.00 43.63 4.30
5836 6474 3.311110 GACAGGGTCTGTGGCCGA 61.311 66.667 5.20 0.00 45.44 5.54
5837 6475 4.742201 CGACAGGGTCTGTGGCCG 62.742 72.222 5.20 0.00 45.44 6.13
5838 6476 3.626924 ACGACAGGGTCTGTGGCC 61.627 66.667 5.20 0.00 45.44 5.36
5855 6502 0.751277 CAACAGTTGCCTGACCACCA 60.751 55.000 0.00 0.00 41.50 4.17
5868 6515 4.471904 TCAGTGAACAGTCTTCAACAGT 57.528 40.909 0.00 0.00 0.00 3.55
5933 6580 4.202010 GGTAGCTGAAGAAACACTGCAAAA 60.202 41.667 0.00 0.00 33.16 2.44
5936 6583 2.104792 AGGTAGCTGAAGAAACACTGCA 59.895 45.455 0.00 0.00 34.35 4.41
5950 6597 6.434652 AGATACATATCGTTGCTAAGGTAGCT 59.565 38.462 8.61 0.00 43.43 3.32
5954 6601 8.462811 CAGATAGATACATATCGTTGCTAAGGT 58.537 37.037 0.00 0.00 37.27 3.50
5963 6610 8.871629 AAAGACTCCAGATAGATACATATCGT 57.128 34.615 0.00 0.00 37.27 3.73
5977 6624 1.048601 AGGCGTCAAAAGACTCCAGA 58.951 50.000 7.32 0.00 32.68 3.86
5984 6631 2.623878 TGGTAACAGGCGTCAAAAGA 57.376 45.000 0.00 0.00 46.17 2.52
6010 6657 5.010922 CCTGTCCCAGTTTCATTGAAAATGA 59.989 40.000 30.71 15.82 46.22 2.57
6012 6659 4.284234 CCCTGTCCCAGTTTCATTGAAAAT 59.716 41.667 13.21 9.73 33.14 1.82
6036 6683 2.406616 CCCGATCAAAAGGCCCACG 61.407 63.158 0.00 0.00 0.00 4.94
6040 6687 2.831685 AAAAACCCGATCAAAAGGCC 57.168 45.000 0.00 0.00 0.00 5.19
6054 6701 8.995419 TGCGCTGGAAATAAAAATTTAAAAAC 57.005 26.923 9.73 0.00 0.00 2.43
6056 6703 9.818796 GATTGCGCTGGAAATAAAAATTTAAAA 57.181 25.926 9.73 0.00 0.00 1.52
6060 6707 8.770438 TTAGATTGCGCTGGAAATAAAAATTT 57.230 26.923 9.73 0.00 0.00 1.82
6061 6708 7.010460 GCTTAGATTGCGCTGGAAATAAAAATT 59.990 33.333 9.73 0.00 0.00 1.82
6072 6719 2.515926 TCTAGCTTAGATTGCGCTGG 57.484 50.000 9.73 0.00 35.33 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.