Multiple sequence alignment - TraesCS7D01G521800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G521800 chr7D 100.000 3617 0 0 1 3617 618872923 618876539 0.000000e+00 6680.0
1 TraesCS7D01G521800 chr7D 80.370 433 49 19 3191 3617 223504686 223504284 2.730000e-76 296.0
2 TraesCS7D01G521800 chr7D 84.444 180 16 3 2741 2918 618876150 618876319 2.230000e-37 167.0
3 TraesCS7D01G521800 chr7D 77.619 210 16 12 2744 2953 223504646 223504468 8.270000e-17 99.0
4 TraesCS7D01G521800 chr7A 92.943 3500 193 30 1 3462 712421239 712424722 0.000000e+00 5046.0
5 TraesCS7D01G521800 chr7A 79.263 434 55 20 3191 3617 594424693 594424288 1.660000e-68 270.0
6 TraesCS7D01G521800 chr7A 77.619 210 19 9 2744 2953 594424653 594424472 6.390000e-18 102.0
7 TraesCS7D01G521800 chr7A 82.474 97 5 6 2741 2836 712424474 712424559 1.390000e-09 75.0
8 TraesCS7D01G521800 chr7B 93.084 2863 131 28 625 3462 713288779 713291599 0.000000e+00 4128.0
9 TraesCS7D01G521800 chr7B 90.484 578 39 8 1 572 713288214 713288781 0.000000e+00 749.0
10 TraesCS7D01G521800 chr7B 90.452 398 38 0 1201 1598 86005807 86006204 3.200000e-145 525.0
11 TraesCS7D01G521800 chr7B 90.201 398 39 0 1201 1598 289702397 289702794 1.490000e-143 520.0
12 TraesCS7D01G521800 chr4B 95.012 401 20 0 1201 1601 330524462 330524062 6.590000e-177 630.0
13 TraesCS7D01G521800 chr4B 91.771 401 33 0 1201 1601 528807636 528807236 3.150000e-155 558.0
14 TraesCS7D01G521800 chr5B 93.358 271 18 0 1201 1471 534150368 534150098 5.630000e-108 401.0
15 TraesCS7D01G521800 chr1B 82.353 442 36 15 3191 3617 502323993 502324407 2.670000e-91 346.0
16 TraesCS7D01G521800 chr1B 76.712 219 22 12 2743 2960 502324032 502324222 1.070000e-15 95.3
17 TraesCS7D01G521800 chr4A 80.233 430 59 15 3191 3617 535953745 535954151 2.110000e-77 300.0
18 TraesCS7D01G521800 chr4A 84.545 110 7 2 2744 2853 535953785 535953884 2.300000e-17 100.0
19 TraesCS7D01G521800 chrUn 80.233 430 58 15 3191 3617 208645027 208644622 7.590000e-77 298.0
20 TraesCS7D01G521800 chr6A 80.233 430 58 16 3191 3617 110220966 110221371 7.590000e-77 298.0
21 TraesCS7D01G521800 chr6B 79.954 434 52 19 3191 3617 31284295 31284700 1.640000e-73 287.0
22 TraesCS7D01G521800 chr6B 77.143 210 20 11 2744 2953 31284335 31284516 2.970000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G521800 chr7D 618872923 618876539 3616 False 3423.5 6680 92.2220 1 3617 2 chr7D.!!$F1 3616
1 TraesCS7D01G521800 chr7A 712421239 712424722 3483 False 2560.5 5046 87.7085 1 3462 2 chr7A.!!$F1 3461
2 TraesCS7D01G521800 chr7B 713288214 713291599 3385 False 2438.5 4128 91.7840 1 3462 2 chr7B.!!$F3 3461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 850 1.001633 TGGGCTCACTTCGGTAGAAAC 59.998 52.381 0.0 0.0 35.71 2.78 F
1602 1638 1.227823 CCACAACCTCTTCGCCACA 60.228 57.895 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1692 0.250295 CGTGGGAGAAGGTCAAAGCA 60.250 55.0 0.00 0.0 0.0 3.91 R
3371 3424 0.104487 AGCTCTGGCACGATGATCAG 59.896 55.0 0.09 0.0 41.7 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.978687 ACTGACGAGTACTTGGAAACAG 58.021 45.455 14.75 17.07 44.54 3.16
28 29 3.382227 TGACGAGTACTTGGAAACAGACA 59.618 43.478 14.75 0.00 44.54 3.41
106 107 2.036387 TGTAGCCGCCACATGTATAGT 58.964 47.619 0.00 0.00 0.00 2.12
377 391 7.939782 TCAGAAGCACAAATTCAACTATTTCA 58.060 30.769 0.00 0.00 0.00 2.69
561 577 8.408043 TTTTGATCCATAGTTTTCTCACACAT 57.592 30.769 0.00 0.00 0.00 3.21
622 638 9.103861 CAACCTTTTAAACATACACCAACAAAT 57.896 29.630 0.00 0.00 0.00 2.32
656 672 8.530311 AGTATTCCATGCACAATTTCACAATAA 58.470 29.630 0.00 0.00 0.00 1.40
660 676 8.618702 TCCATGCACAATTTCACAATAATTTT 57.381 26.923 0.00 0.00 0.00 1.82
661 677 9.064706 TCCATGCACAATTTCACAATAATTTTT 57.935 25.926 0.00 0.00 0.00 1.94
784 806 3.149981 GTTGTTCCTTTAGAAGCTGGCT 58.850 45.455 0.00 0.00 34.29 4.75
788 810 4.013050 GTTCCTTTAGAAGCTGGCTCATT 58.987 43.478 0.00 0.00 34.29 2.57
789 811 4.307032 TCCTTTAGAAGCTGGCTCATTT 57.693 40.909 0.00 0.00 0.00 2.32
809 834 2.579410 TGTTTAGAGGAAACCTGGGC 57.421 50.000 0.00 0.00 45.94 5.36
813 838 1.276622 TAGAGGAAACCTGGGCTCAC 58.723 55.000 0.00 0.00 31.76 3.51
821 846 1.258445 ACCTGGGCTCACTTCGGTAG 61.258 60.000 0.00 0.00 0.00 3.18
824 849 1.275291 CTGGGCTCACTTCGGTAGAAA 59.725 52.381 0.00 0.00 35.71 2.52
825 850 1.001633 TGGGCTCACTTCGGTAGAAAC 59.998 52.381 0.00 0.00 35.71 2.78
835 860 5.232838 CACTTCGGTAGAAACAACGTTAAGT 59.767 40.000 0.00 0.00 35.71 2.24
843 868 9.201127 GGTAGAAACAACGTTAAGTCTTCTATT 57.799 33.333 0.00 0.00 34.18 1.73
967 994 2.798364 GCTAGGGTTCCTCTCGCCC 61.798 68.421 0.00 0.00 42.64 6.13
968 995 2.441532 TAGGGTTCCTCTCGCCCG 60.442 66.667 0.00 0.00 46.69 6.13
1602 1638 1.227823 CCACAACCTCTTCGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
1663 1699 2.440599 GGAAGGCCCCTGCTTTGA 59.559 61.111 0.00 0.00 36.85 2.69
1773 1809 0.039618 GGGATGTGATTGGTGGTGGT 59.960 55.000 0.00 0.00 0.00 4.16
1812 1848 2.419297 GGAGAGCCATGTCAAGACGATT 60.419 50.000 0.00 0.00 0.00 3.34
1815 1851 4.074970 AGAGCCATGTCAAGACGATTTTT 58.925 39.130 0.00 0.00 0.00 1.94
2181 2217 1.218316 GGAGGGCGACTTCGTGATT 59.782 57.895 0.00 0.00 42.22 2.57
2624 2660 6.902417 GCGAGTAGATTAGAGTGAATTTTTGC 59.098 38.462 0.00 0.00 0.00 3.68
2631 2667 6.817765 TTAGAGTGAATTTTTGCTACCTGG 57.182 37.500 0.00 0.00 0.00 4.45
2679 2715 7.762159 TGTATGTTCATTTACGCTTCATAGACA 59.238 33.333 0.00 0.00 0.00 3.41
2681 2717 6.827641 TGTTCATTTACGCTTCATAGACAAC 58.172 36.000 0.00 0.00 0.00 3.32
2932 2968 6.476378 AGCTAGAATGGTTACATTTGTCTGT 58.524 36.000 0.00 0.00 46.89 3.41
2960 2996 5.649782 ATTGATAGTTTTGCTGTTCCAGG 57.350 39.130 0.00 0.00 31.21 4.45
2981 3017 2.224402 GGACTGGAGCTTTTCTGTGTCT 60.224 50.000 0.00 0.00 0.00 3.41
3022 3058 9.458374 CGGTCTTGATATTTTTGTAAACTTTGT 57.542 29.630 0.00 0.00 0.00 2.83
3037 3073 8.079203 TGTAAACTTTGTAATGCATCGTCAAAT 58.921 29.630 17.68 10.30 0.00 2.32
3040 3076 6.086222 ACTTTGTAATGCATCGTCAAATGAC 58.914 36.000 17.68 3.43 41.47 3.06
3049 3085 4.248859 CATCGTCAAATGACTTCTGGACT 58.751 43.478 11.45 0.00 42.66 3.85
3072 3108 1.078759 GCAATCCGTCTCCTGTCACG 61.079 60.000 0.00 0.00 35.72 4.35
3085 3121 3.066064 TCCTGTCACGACAAAATTTGTGG 59.934 43.478 16.78 17.04 45.52 4.17
3098 3134 0.746063 TTTGTGGAAGTTGGCTGCTG 59.254 50.000 0.00 0.00 0.00 4.41
3103 3139 0.390492 GGAAGTTGGCTGCTGCTTTT 59.610 50.000 15.64 5.04 39.59 2.27
3151 3187 3.244526 TGCTACTTTCACCTTGCATCTGA 60.245 43.478 0.00 0.00 0.00 3.27
3152 3188 3.944015 GCTACTTTCACCTTGCATCTGAT 59.056 43.478 0.00 0.00 0.00 2.90
3154 3190 5.448360 GCTACTTTCACCTTGCATCTGATTC 60.448 44.000 0.00 0.00 0.00 2.52
3168 3204 6.885918 TGCATCTGATTCTCAGGTATTTTGAA 59.114 34.615 4.43 0.00 44.39 2.69
3232 3268 3.317149 CACATGGCCATAATCCTGACTTG 59.683 47.826 20.30 5.36 0.00 3.16
3305 3341 1.448985 TGTGGTCGCTTATTCCTTGC 58.551 50.000 0.00 0.00 0.00 4.01
3322 3373 0.610174 TGCGCTTCTCTTCCAGACAT 59.390 50.000 9.73 0.00 0.00 3.06
3371 3424 3.909086 GAGACCCTGTGGCCTGTGC 62.909 68.421 3.32 0.00 33.59 4.57
3373 3426 4.275508 ACCCTGTGGCCTGTGCTG 62.276 66.667 3.32 0.00 37.74 4.41
3374 3427 3.957586 CCCTGTGGCCTGTGCTGA 61.958 66.667 3.32 0.00 37.74 4.26
3375 3428 2.353958 CCTGTGGCCTGTGCTGAT 59.646 61.111 3.32 0.00 37.74 2.90
3376 3429 1.748122 CCTGTGGCCTGTGCTGATC 60.748 63.158 3.32 0.00 37.74 2.92
3377 3430 1.002990 CTGTGGCCTGTGCTGATCA 60.003 57.895 3.32 0.00 37.74 2.92
3378 3431 0.393944 CTGTGGCCTGTGCTGATCAT 60.394 55.000 3.32 0.00 37.74 2.45
3379 3432 0.393402 TGTGGCCTGTGCTGATCATC 60.393 55.000 3.32 0.00 37.74 2.92
3397 3450 1.086696 TCGTGCCAGAGCTAAAATGC 58.913 50.000 0.00 0.00 40.80 3.56
3452 3520 3.909732 TCTCTTGCCCTTTCCTCAAAAA 58.090 40.909 0.00 0.00 0.00 1.94
3456 3524 1.688197 TGCCCTTTCCTCAAAAAGCTG 59.312 47.619 0.00 0.00 35.37 4.24
3462 3530 5.069119 CCCTTTCCTCAAAAAGCTGTAACTT 59.931 40.000 0.00 0.00 35.37 2.66
3463 3531 6.264518 CCCTTTCCTCAAAAAGCTGTAACTTA 59.735 38.462 0.00 0.00 35.37 2.24
3464 3532 7.039714 CCCTTTCCTCAAAAAGCTGTAACTTAT 60.040 37.037 0.00 0.00 35.37 1.73
3465 3533 8.023706 CCTTTCCTCAAAAAGCTGTAACTTATC 58.976 37.037 0.00 0.00 35.37 1.75
3466 3534 8.458573 TTTCCTCAAAAAGCTGTAACTTATCA 57.541 30.769 0.00 0.00 0.00 2.15
3467 3535 8.458573 TTCCTCAAAAAGCTGTAACTTATCAA 57.541 30.769 0.00 0.00 0.00 2.57
3468 3536 8.458573 TCCTCAAAAAGCTGTAACTTATCAAA 57.541 30.769 0.00 0.00 0.00 2.69
3469 3537 8.908903 TCCTCAAAAAGCTGTAACTTATCAAAA 58.091 29.630 0.00 0.00 0.00 2.44
3470 3538 9.696917 CCTCAAAAAGCTGTAACTTATCAAAAT 57.303 29.630 0.00 0.00 0.00 1.82
3477 3545 8.816640 AGCTGTAACTTATCAAAATTTTGTGG 57.183 30.769 25.98 17.30 39.18 4.17
3478 3546 8.421002 AGCTGTAACTTATCAAAATTTTGTGGT 58.579 29.630 25.98 17.80 39.18 4.16
3479 3547 9.040939 GCTGTAACTTATCAAAATTTTGTGGTT 57.959 29.630 25.98 23.82 39.18 3.67
3489 3557 9.679661 ATCAAAATTTTGTGGTTTAAGGAGTTT 57.320 25.926 25.98 0.00 39.18 2.66
3490 3558 9.157104 TCAAAATTTTGTGGTTTAAGGAGTTTC 57.843 29.630 25.98 0.00 39.18 2.78
3491 3559 9.161629 CAAAATTTTGTGGTTTAAGGAGTTTCT 57.838 29.630 20.57 0.00 33.59 2.52
3492 3560 8.716646 AAATTTTGTGGTTTAAGGAGTTTCTG 57.283 30.769 0.00 0.00 0.00 3.02
3493 3561 7.654022 ATTTTGTGGTTTAAGGAGTTTCTGA 57.346 32.000 0.00 0.00 0.00 3.27
3494 3562 7.469537 TTTTGTGGTTTAAGGAGTTTCTGAA 57.530 32.000 0.00 0.00 0.00 3.02
3495 3563 7.469537 TTTGTGGTTTAAGGAGTTTCTGAAA 57.530 32.000 0.00 0.00 0.00 2.69
3496 3564 7.654022 TTGTGGTTTAAGGAGTTTCTGAAAT 57.346 32.000 6.06 0.00 0.00 2.17
3497 3565 7.038154 TGTGGTTTAAGGAGTTTCTGAAATG 57.962 36.000 6.06 0.00 0.00 2.32
3498 3566 5.920840 GTGGTTTAAGGAGTTTCTGAAATGC 59.079 40.000 6.06 1.81 0.00 3.56
3499 3567 5.596361 TGGTTTAAGGAGTTTCTGAAATGCA 59.404 36.000 6.06 0.00 0.00 3.96
3500 3568 6.267471 TGGTTTAAGGAGTTTCTGAAATGCAT 59.733 34.615 6.06 0.00 0.00 3.96
3501 3569 6.587608 GGTTTAAGGAGTTTCTGAAATGCATG 59.412 38.462 0.00 0.00 0.00 4.06
3502 3570 7.370383 GTTTAAGGAGTTTCTGAAATGCATGA 58.630 34.615 0.00 0.00 0.00 3.07
3503 3571 7.523293 TTAAGGAGTTTCTGAAATGCATGAA 57.477 32.000 0.00 0.00 0.00 2.57
3504 3572 6.409524 AAGGAGTTTCTGAAATGCATGAAA 57.590 33.333 0.00 2.63 0.00 2.69
3505 3573 5.776744 AGGAGTTTCTGAAATGCATGAAAC 58.223 37.500 23.09 23.09 40.70 2.78
3506 3574 5.537674 AGGAGTTTCTGAAATGCATGAAACT 59.462 36.000 28.96 28.96 46.06 2.66
3507 3575 6.716628 AGGAGTTTCTGAAATGCATGAAACTA 59.283 34.615 28.77 3.92 44.93 2.24
3508 3576 7.025963 GGAGTTTCTGAAATGCATGAAACTAG 58.974 38.462 28.77 12.51 44.93 2.57
3509 3577 7.094634 GGAGTTTCTGAAATGCATGAAACTAGA 60.095 37.037 28.77 14.11 44.93 2.43
3510 3578 7.814642 AGTTTCTGAAATGCATGAAACTAGAG 58.185 34.615 28.12 8.13 44.15 2.43
3511 3579 7.446625 AGTTTCTGAAATGCATGAAACTAGAGT 59.553 33.333 28.12 13.53 44.15 3.24
3512 3580 8.721478 GTTTCTGAAATGCATGAAACTAGAGTA 58.279 33.333 23.19 5.44 39.21 2.59
3513 3581 8.484641 TTCTGAAATGCATGAAACTAGAGTAG 57.515 34.615 0.00 0.00 0.00 2.57
3514 3582 7.840931 TCTGAAATGCATGAAACTAGAGTAGA 58.159 34.615 0.00 0.00 0.00 2.59
3515 3583 7.761704 TCTGAAATGCATGAAACTAGAGTAGAC 59.238 37.037 0.00 0.00 0.00 2.59
3516 3584 6.531594 TGAAATGCATGAAACTAGAGTAGACG 59.468 38.462 0.00 0.00 0.00 4.18
3517 3585 4.371855 TGCATGAAACTAGAGTAGACGG 57.628 45.455 0.00 0.00 0.00 4.79
3518 3586 3.762288 TGCATGAAACTAGAGTAGACGGT 59.238 43.478 0.00 0.00 0.00 4.83
3519 3587 4.945543 TGCATGAAACTAGAGTAGACGGTA 59.054 41.667 0.00 0.00 0.00 4.02
3520 3588 5.066117 TGCATGAAACTAGAGTAGACGGTAG 59.934 44.000 0.00 0.00 0.00 3.18
3521 3589 5.512473 CATGAAACTAGAGTAGACGGTAGC 58.488 45.833 0.00 0.00 0.00 3.58
3522 3590 4.841422 TGAAACTAGAGTAGACGGTAGCT 58.159 43.478 0.00 0.00 0.00 3.32
3523 3591 4.634883 TGAAACTAGAGTAGACGGTAGCTG 59.365 45.833 0.00 0.00 0.00 4.24
3524 3592 3.910568 ACTAGAGTAGACGGTAGCTGT 57.089 47.619 0.00 0.00 0.00 4.40
3525 3593 5.350504 AACTAGAGTAGACGGTAGCTGTA 57.649 43.478 0.00 0.00 0.00 2.74
3526 3594 5.549742 ACTAGAGTAGACGGTAGCTGTAT 57.450 43.478 0.00 0.00 0.00 2.29
3527 3595 6.662865 ACTAGAGTAGACGGTAGCTGTATA 57.337 41.667 0.00 0.00 0.00 1.47
3528 3596 6.690530 ACTAGAGTAGACGGTAGCTGTATAG 58.309 44.000 0.00 0.00 0.00 1.31
3542 3610 5.986004 GCTGTATAGCGACCATTAGTTTT 57.014 39.130 0.00 0.00 40.67 2.43
3543 3611 6.359480 GCTGTATAGCGACCATTAGTTTTT 57.641 37.500 0.00 0.00 40.67 1.94
3544 3612 6.419771 GCTGTATAGCGACCATTAGTTTTTC 58.580 40.000 0.00 0.00 40.67 2.29
3545 3613 6.258068 GCTGTATAGCGACCATTAGTTTTTCT 59.742 38.462 0.00 0.00 40.67 2.52
3546 3614 7.201617 GCTGTATAGCGACCATTAGTTTTTCTT 60.202 37.037 0.00 0.00 40.67 2.52
3547 3615 9.309516 CTGTATAGCGACCATTAGTTTTTCTTA 57.690 33.333 0.00 0.00 0.00 2.10
3548 3616 9.826574 TGTATAGCGACCATTAGTTTTTCTTAT 57.173 29.630 0.00 0.00 0.00 1.73
3551 3619 7.247929 AGCGACCATTAGTTTTTCTTATAGC 57.752 36.000 0.00 0.00 0.00 2.97
3552 3620 7.048512 AGCGACCATTAGTTTTTCTTATAGCT 58.951 34.615 0.00 0.00 0.00 3.32
3553 3621 7.553044 AGCGACCATTAGTTTTTCTTATAGCTT 59.447 33.333 0.00 0.00 0.00 3.74
3554 3622 7.640240 GCGACCATTAGTTTTTCTTATAGCTTG 59.360 37.037 0.00 0.00 0.00 4.01
3555 3623 8.665685 CGACCATTAGTTTTTCTTATAGCTTGT 58.334 33.333 0.00 0.00 0.00 3.16
3568 3636 9.890629 TTCTTATAGCTTGTTGAATCATGTACT 57.109 29.630 0.00 0.00 0.00 2.73
3569 3637 9.317936 TCTTATAGCTTGTTGAATCATGTACTG 57.682 33.333 0.00 0.00 0.00 2.74
3570 3638 6.932356 ATAGCTTGTTGAATCATGTACTGG 57.068 37.500 0.00 0.00 0.00 4.00
3571 3639 4.012374 AGCTTGTTGAATCATGTACTGGG 58.988 43.478 0.00 0.00 0.00 4.45
3572 3640 4.009675 GCTTGTTGAATCATGTACTGGGA 58.990 43.478 0.00 0.00 0.00 4.37
3573 3641 4.095483 GCTTGTTGAATCATGTACTGGGAG 59.905 45.833 0.00 0.00 0.00 4.30
3574 3642 4.908601 TGTTGAATCATGTACTGGGAGT 57.091 40.909 0.00 0.00 0.00 3.85
3575 3643 4.578871 TGTTGAATCATGTACTGGGAGTG 58.421 43.478 0.00 0.00 0.00 3.51
3576 3644 4.285775 TGTTGAATCATGTACTGGGAGTGA 59.714 41.667 0.00 0.00 0.00 3.41
3577 3645 4.471904 TGAATCATGTACTGGGAGTGAC 57.528 45.455 0.00 0.00 0.00 3.67
3578 3646 3.197766 TGAATCATGTACTGGGAGTGACC 59.802 47.826 0.00 0.00 38.08 4.02
3579 3647 2.623418 TCATGTACTGGGAGTGACCT 57.377 50.000 0.00 0.00 38.98 3.85
3580 3648 2.179427 TCATGTACTGGGAGTGACCTG 58.821 52.381 0.00 0.00 38.98 4.00
3581 3649 2.179427 CATGTACTGGGAGTGACCTGA 58.821 52.381 0.00 0.00 38.98 3.86
3582 3650 2.391926 TGTACTGGGAGTGACCTGAA 57.608 50.000 0.00 0.00 38.98 3.02
3583 3651 2.248248 TGTACTGGGAGTGACCTGAAG 58.752 52.381 0.00 0.00 38.98 3.02
3584 3652 1.066787 GTACTGGGAGTGACCTGAAGC 60.067 57.143 0.00 0.00 38.98 3.86
3585 3653 0.472734 ACTGGGAGTGACCTGAAGCT 60.473 55.000 0.00 0.00 38.98 3.74
3586 3654 0.248843 CTGGGAGTGACCTGAAGCTC 59.751 60.000 0.00 0.00 38.98 4.09
3587 3655 0.471780 TGGGAGTGACCTGAAGCTCA 60.472 55.000 0.00 0.00 38.98 4.26
3588 3656 0.908198 GGGAGTGACCTGAAGCTCAT 59.092 55.000 0.00 0.00 38.98 2.90
3589 3657 1.134551 GGGAGTGACCTGAAGCTCATC 60.135 57.143 0.00 0.00 38.98 2.92
3590 3658 1.134551 GGAGTGACCTGAAGCTCATCC 60.135 57.143 0.00 0.00 35.41 3.51
3591 3659 0.534412 AGTGACCTGAAGCTCATCCG 59.466 55.000 0.00 0.00 0.00 4.18
3592 3660 1.086634 GTGACCTGAAGCTCATCCGC 61.087 60.000 0.00 0.00 0.00 5.54
3593 3661 1.219124 GACCTGAAGCTCATCCGCA 59.781 57.895 0.00 0.00 0.00 5.69
3594 3662 0.179062 GACCTGAAGCTCATCCGCAT 60.179 55.000 0.00 0.00 0.00 4.73
3595 3663 0.463295 ACCTGAAGCTCATCCGCATG 60.463 55.000 0.00 0.00 0.00 4.06
3596 3664 0.179065 CCTGAAGCTCATCCGCATGA 60.179 55.000 0.00 0.00 36.62 3.07
3597 3665 1.542767 CCTGAAGCTCATCCGCATGAT 60.543 52.381 0.00 0.00 38.42 2.45
3598 3666 2.289257 CCTGAAGCTCATCCGCATGATA 60.289 50.000 0.00 0.00 38.42 2.15
3599 3667 2.735663 CTGAAGCTCATCCGCATGATAC 59.264 50.000 0.00 0.00 38.42 2.24
3600 3668 2.102925 TGAAGCTCATCCGCATGATACA 59.897 45.455 0.00 0.00 38.42 2.29
3601 3669 2.160822 AGCTCATCCGCATGATACAC 57.839 50.000 0.00 0.00 38.42 2.90
3602 3670 1.690893 AGCTCATCCGCATGATACACT 59.309 47.619 0.00 0.00 38.42 3.55
3603 3671 1.797046 GCTCATCCGCATGATACACTG 59.203 52.381 0.00 0.00 38.42 3.66
3604 3672 2.410939 CTCATCCGCATGATACACTGG 58.589 52.381 0.00 0.00 38.42 4.00
3605 3673 1.070601 TCATCCGCATGATACACTGGG 59.929 52.381 0.00 0.00 33.80 4.45
3606 3674 1.131638 ATCCGCATGATACACTGGGT 58.868 50.000 0.00 0.00 0.00 4.51
3607 3675 0.908910 TCCGCATGATACACTGGGTT 59.091 50.000 0.00 0.00 0.00 4.11
3608 3676 1.016627 CCGCATGATACACTGGGTTG 58.983 55.000 0.00 0.00 0.00 3.77
3609 3677 1.678728 CCGCATGATACACTGGGTTGT 60.679 52.381 0.00 0.00 0.00 3.32
3610 3678 2.419436 CCGCATGATACACTGGGTTGTA 60.419 50.000 0.00 0.00 36.41 2.41
3611 3679 2.607635 CGCATGATACACTGGGTTGTAC 59.392 50.000 0.00 0.00 34.79 2.90
3612 3680 3.605634 GCATGATACACTGGGTTGTACA 58.394 45.455 0.00 0.00 34.79 2.90
3613 3681 4.199310 GCATGATACACTGGGTTGTACAT 58.801 43.478 0.00 0.00 34.79 2.29
3614 3682 4.035558 GCATGATACACTGGGTTGTACATG 59.964 45.833 0.00 14.67 40.23 3.21
3615 3683 5.427378 CATGATACACTGGGTTGTACATGA 58.573 41.667 0.00 0.00 40.01 3.07
3616 3684 5.084818 TGATACACTGGGTTGTACATGAG 57.915 43.478 0.00 0.00 34.79 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.382227 TGTCTGTTTCCAAGTACTCGTCA 59.618 43.478 0.00 0.00 0.00 4.35
25 26 6.237701 CGAGCTAGACTATTTTGCTTCTTGTC 60.238 42.308 0.00 0.00 33.83 3.18
28 29 5.112686 CCGAGCTAGACTATTTTGCTTCTT 58.887 41.667 0.00 0.00 33.83 2.52
201 206 6.223120 AGCATTACTTTGGGTTTCATCAAAC 58.777 36.000 0.00 0.00 41.22 2.93
207 212 7.589958 TCTTTTAGCATTACTTTGGGTTTCA 57.410 32.000 0.00 0.00 0.00 2.69
208 213 9.489084 AAATCTTTTAGCATTACTTTGGGTTTC 57.511 29.630 0.00 0.00 0.00 2.78
530 546 7.391554 TGAGAAAACTATGGATCAAAAGTGAGG 59.608 37.037 0.00 0.00 37.14 3.86
539 555 6.475504 ACATGTGTGAGAAAACTATGGATCA 58.524 36.000 0.00 0.00 0.00 2.92
540 556 6.992063 ACATGTGTGAGAAAACTATGGATC 57.008 37.500 0.00 0.00 0.00 3.36
625 641 9.202273 GTGAAATTGTGCATGGAATACTTTTTA 57.798 29.630 0.00 0.00 0.00 1.52
809 834 3.378339 ACGTTGTTTCTACCGAAGTGAG 58.622 45.455 0.00 0.00 0.00 3.51
813 838 5.689068 AGACTTAACGTTGTTTCTACCGAAG 59.311 40.000 11.99 4.85 0.00 3.79
821 846 7.295930 CCCAATAGAAGACTTAACGTTGTTTC 58.704 38.462 11.99 7.39 0.00 2.78
824 849 4.694037 GCCCAATAGAAGACTTAACGTTGT 59.306 41.667 11.99 0.00 0.00 3.32
825 850 4.094442 GGCCCAATAGAAGACTTAACGTTG 59.906 45.833 11.99 0.00 0.00 4.10
835 860 4.503714 AGAATTTCGGCCCAATAGAAGA 57.496 40.909 0.00 0.00 0.00 2.87
843 868 2.159382 GTCTTCAAGAATTTCGGCCCA 58.841 47.619 0.00 0.00 0.00 5.36
1572 1608 3.307906 TTGTGGTCGACGGGGGAG 61.308 66.667 9.92 0.00 0.00 4.30
1602 1638 1.755008 GCTCTGGTCGTAGGAGCCT 60.755 63.158 11.76 0.00 44.46 4.58
1656 1692 0.250295 CGTGGGAGAAGGTCAAAGCA 60.250 55.000 0.00 0.00 0.00 3.91
1737 1773 1.979308 TCCCAAATCTTCACCGTGGTA 59.021 47.619 0.00 0.00 0.00 3.25
1746 1782 4.142093 CCACCAATCACATCCCAAATCTTC 60.142 45.833 0.00 0.00 0.00 2.87
2115 2151 4.136051 GGAAGTATCTGTAGTAGCTCGGT 58.864 47.826 0.00 0.00 0.00 4.69
2181 2217 4.519610 GCCTTCTTGGGCCTTGAA 57.480 55.556 4.53 8.31 45.92 2.69
2611 2647 5.222631 CAACCAGGTAGCAAAAATTCACTC 58.777 41.667 0.00 0.00 0.00 3.51
2624 2660 2.044946 GGCAGCCCAACCAGGTAG 60.045 66.667 0.00 0.00 34.66 3.18
2631 2667 0.967380 AGCACTTATGGCAGCCCAAC 60.967 55.000 9.64 0.00 46.14 3.77
2679 2715 0.814457 TTCACCAACAAGCAAGCGTT 59.186 45.000 0.00 0.00 0.00 4.84
2681 2717 2.138596 ATTTCACCAACAAGCAAGCG 57.861 45.000 0.00 0.00 0.00 4.68
2932 2968 8.417106 TGGAACAGCAAAACTATCAATTTGTTA 58.583 29.630 0.00 0.00 38.48 2.41
2960 2996 2.147150 GACACAGAAAAGCTCCAGTCC 58.853 52.381 0.00 0.00 0.00 3.85
3037 3073 3.118261 GGATTGCCATAGTCCAGAAGTCA 60.118 47.826 0.00 0.00 35.36 3.41
3040 3076 2.158900 ACGGATTGCCATAGTCCAGAAG 60.159 50.000 0.00 0.00 34.99 2.85
3049 3085 1.412710 GACAGGAGACGGATTGCCATA 59.587 52.381 0.00 0.00 0.00 2.74
3072 3108 4.270808 CAGCCAACTTCCACAAATTTTGTC 59.729 41.667 11.78 0.00 43.23 3.18
3083 3119 0.756442 AAAGCAGCAGCCAACTTCCA 60.756 50.000 0.00 0.00 43.56 3.53
3085 3121 1.494824 CAAAAGCAGCAGCCAACTTC 58.505 50.000 0.00 0.00 43.56 3.01
3098 3134 4.440663 GGATGGATTAAGGAGTGCAAAAGC 60.441 45.833 0.00 0.00 0.00 3.51
3103 3139 2.204463 TGGGATGGATTAAGGAGTGCA 58.796 47.619 0.00 0.00 0.00 4.57
3177 3213 7.039923 ACAGAGCATTGAATTGAGAACTGAAAT 60.040 33.333 0.00 0.00 0.00 2.17
3183 3219 5.618056 TCACAGAGCATTGAATTGAGAAC 57.382 39.130 0.00 0.00 0.00 3.01
3185 3221 6.317140 GGTAATCACAGAGCATTGAATTGAGA 59.683 38.462 0.00 0.00 0.00 3.27
3188 3224 6.032094 GTGGTAATCACAGAGCATTGAATTG 58.968 40.000 0.00 0.00 45.39 2.32
3265 3301 7.281774 ACCACATCACTTGAACTGAATATCATC 59.718 37.037 0.00 0.00 0.00 2.92
3371 3424 0.104487 AGCTCTGGCACGATGATCAG 59.896 55.000 0.09 0.00 41.70 2.90
3373 3426 2.515926 TTAGCTCTGGCACGATGATC 57.484 50.000 0.00 0.00 41.70 2.92
3374 3427 2.988010 TTTAGCTCTGGCACGATGAT 57.012 45.000 0.00 0.00 41.70 2.45
3375 3428 2.760634 TTTTAGCTCTGGCACGATGA 57.239 45.000 0.00 0.00 41.70 2.92
3376 3429 2.540361 GCATTTTAGCTCTGGCACGATG 60.540 50.000 0.00 0.00 41.70 3.84
3377 3430 1.672881 GCATTTTAGCTCTGGCACGAT 59.327 47.619 0.00 0.00 41.70 3.73
3378 3431 1.086696 GCATTTTAGCTCTGGCACGA 58.913 50.000 0.00 0.00 41.70 4.35
3379 3432 0.804364 TGCATTTTAGCTCTGGCACG 59.196 50.000 0.00 0.00 41.70 5.34
3397 3450 6.293027 GGAACAGCAAAACCATCAATTTCTTG 60.293 38.462 0.00 0.00 0.00 3.02
3452 3520 8.421002 ACCACAAAATTTTGATAAGTTACAGCT 58.579 29.630 32.20 6.92 40.55 4.24
3463 3531 9.679661 AAACTCCTTAAACCACAAAATTTTGAT 57.320 25.926 32.20 16.50 40.55 2.57
3464 3532 9.157104 GAAACTCCTTAAACCACAAAATTTTGA 57.843 29.630 32.20 10.31 40.55 2.69
3465 3533 9.161629 AGAAACTCCTTAAACCACAAAATTTTG 57.838 29.630 25.73 25.73 43.62 2.44
3466 3534 9.161629 CAGAAACTCCTTAAACCACAAAATTTT 57.838 29.630 0.00 0.00 0.00 1.82
3467 3535 8.536175 TCAGAAACTCCTTAAACCACAAAATTT 58.464 29.630 0.00 0.00 0.00 1.82
3468 3536 8.073467 TCAGAAACTCCTTAAACCACAAAATT 57.927 30.769 0.00 0.00 0.00 1.82
3469 3537 7.654022 TCAGAAACTCCTTAAACCACAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
3470 3538 7.469537 TTCAGAAACTCCTTAAACCACAAAA 57.530 32.000 0.00 0.00 0.00 2.44
3471 3539 7.469537 TTTCAGAAACTCCTTAAACCACAAA 57.530 32.000 0.00 0.00 0.00 2.83
3472 3540 7.488322 CATTTCAGAAACTCCTTAAACCACAA 58.512 34.615 0.00 0.00 0.00 3.33
3473 3541 6.460953 GCATTTCAGAAACTCCTTAAACCACA 60.461 38.462 0.00 0.00 0.00 4.17
3474 3542 5.920840 GCATTTCAGAAACTCCTTAAACCAC 59.079 40.000 0.00 0.00 0.00 4.16
3475 3543 5.596361 TGCATTTCAGAAACTCCTTAAACCA 59.404 36.000 0.00 0.00 0.00 3.67
3476 3544 6.084326 TGCATTTCAGAAACTCCTTAAACC 57.916 37.500 0.00 0.00 0.00 3.27
3477 3545 7.370383 TCATGCATTTCAGAAACTCCTTAAAC 58.630 34.615 0.00 0.00 0.00 2.01
3478 3546 7.523293 TCATGCATTTCAGAAACTCCTTAAA 57.477 32.000 0.00 0.00 0.00 1.52
3479 3547 7.523293 TTCATGCATTTCAGAAACTCCTTAA 57.477 32.000 0.00 0.00 0.00 1.85
3480 3548 7.370383 GTTTCATGCATTTCAGAAACTCCTTA 58.630 34.615 23.19 0.00 43.81 2.69
3481 3549 6.218746 GTTTCATGCATTTCAGAAACTCCTT 58.781 36.000 23.19 0.00 43.81 3.36
3482 3550 5.776744 GTTTCATGCATTTCAGAAACTCCT 58.223 37.500 23.19 0.00 43.81 3.69
3486 3554 7.588512 ACTCTAGTTTCATGCATTTCAGAAAC 58.411 34.615 23.09 23.09 46.15 2.78
3487 3555 7.750229 ACTCTAGTTTCATGCATTTCAGAAA 57.250 32.000 0.00 0.63 0.00 2.52
3488 3556 8.314021 TCTACTCTAGTTTCATGCATTTCAGAA 58.686 33.333 0.00 0.00 0.00 3.02
3489 3557 7.761704 GTCTACTCTAGTTTCATGCATTTCAGA 59.238 37.037 0.00 0.00 0.00 3.27
3490 3558 7.253917 CGTCTACTCTAGTTTCATGCATTTCAG 60.254 40.741 0.00 0.00 0.00 3.02
3491 3559 6.531594 CGTCTACTCTAGTTTCATGCATTTCA 59.468 38.462 0.00 0.00 0.00 2.69
3492 3560 6.019479 CCGTCTACTCTAGTTTCATGCATTTC 60.019 42.308 0.00 0.00 0.00 2.17
3493 3561 5.812642 CCGTCTACTCTAGTTTCATGCATTT 59.187 40.000 0.00 0.00 0.00 2.32
3494 3562 5.105310 ACCGTCTACTCTAGTTTCATGCATT 60.105 40.000 0.00 0.00 0.00 3.56
3495 3563 4.402793 ACCGTCTACTCTAGTTTCATGCAT 59.597 41.667 0.00 0.00 0.00 3.96
3496 3564 3.762288 ACCGTCTACTCTAGTTTCATGCA 59.238 43.478 0.00 0.00 0.00 3.96
3497 3565 4.373348 ACCGTCTACTCTAGTTTCATGC 57.627 45.455 0.00 0.00 0.00 4.06
3498 3566 5.297278 AGCTACCGTCTACTCTAGTTTCATG 59.703 44.000 0.00 0.00 0.00 3.07
3499 3567 5.297278 CAGCTACCGTCTACTCTAGTTTCAT 59.703 44.000 0.00 0.00 0.00 2.57
3500 3568 4.634883 CAGCTACCGTCTACTCTAGTTTCA 59.365 45.833 0.00 0.00 0.00 2.69
3501 3569 4.635324 ACAGCTACCGTCTACTCTAGTTTC 59.365 45.833 0.00 0.00 0.00 2.78
3502 3570 4.587891 ACAGCTACCGTCTACTCTAGTTT 58.412 43.478 0.00 0.00 0.00 2.66
3503 3571 4.219264 ACAGCTACCGTCTACTCTAGTT 57.781 45.455 0.00 0.00 0.00 2.24
3504 3572 3.910568 ACAGCTACCGTCTACTCTAGT 57.089 47.619 0.00 0.00 0.00 2.57
3505 3573 5.577945 GCTATACAGCTACCGTCTACTCTAG 59.422 48.000 0.00 0.00 44.93 2.43
3506 3574 5.477510 GCTATACAGCTACCGTCTACTCTA 58.522 45.833 0.00 0.00 44.93 2.43
3507 3575 4.317488 GCTATACAGCTACCGTCTACTCT 58.683 47.826 0.00 0.00 44.93 3.24
3508 3576 3.123284 CGCTATACAGCTACCGTCTACTC 59.877 52.174 0.00 0.00 46.26 2.59
3509 3577 3.065655 CGCTATACAGCTACCGTCTACT 58.934 50.000 0.00 0.00 46.26 2.57
3510 3578 3.062763 TCGCTATACAGCTACCGTCTAC 58.937 50.000 0.00 0.00 46.26 2.59
3511 3579 3.062763 GTCGCTATACAGCTACCGTCTA 58.937 50.000 0.00 0.00 46.26 2.59
3512 3580 1.872313 GTCGCTATACAGCTACCGTCT 59.128 52.381 0.00 0.00 46.26 4.18
3513 3581 2.313004 GTCGCTATACAGCTACCGTC 57.687 55.000 0.00 0.00 46.26 4.79
3517 3585 5.373981 ACTAATGGTCGCTATACAGCTAC 57.626 43.478 0.00 0.00 46.26 3.58
3518 3586 6.401047 AAACTAATGGTCGCTATACAGCTA 57.599 37.500 0.00 0.00 46.26 3.32
3519 3587 4.939052 AACTAATGGTCGCTATACAGCT 57.061 40.909 0.00 0.00 46.26 4.24
3520 3588 5.986004 AAAACTAATGGTCGCTATACAGC 57.014 39.130 0.00 0.00 44.90 4.40
3521 3589 7.772332 AGAAAAACTAATGGTCGCTATACAG 57.228 36.000 0.00 0.00 0.00 2.74
3522 3590 9.826574 ATAAGAAAAACTAATGGTCGCTATACA 57.173 29.630 0.00 0.00 0.00 2.29
3525 3593 8.989980 GCTATAAGAAAAACTAATGGTCGCTAT 58.010 33.333 0.00 0.00 0.00 2.97
3526 3594 8.202137 AGCTATAAGAAAAACTAATGGTCGCTA 58.798 33.333 0.00 0.00 0.00 4.26
3527 3595 7.048512 AGCTATAAGAAAAACTAATGGTCGCT 58.951 34.615 0.00 0.00 0.00 4.93
3528 3596 7.247929 AGCTATAAGAAAAACTAATGGTCGC 57.752 36.000 0.00 0.00 0.00 5.19
3529 3597 8.665685 ACAAGCTATAAGAAAAACTAATGGTCG 58.334 33.333 0.00 0.00 0.00 4.79
3542 3610 9.890629 AGTACATGATTCAACAAGCTATAAGAA 57.109 29.630 0.00 0.00 0.00 2.52
3543 3611 9.317936 CAGTACATGATTCAACAAGCTATAAGA 57.682 33.333 0.00 0.00 0.00 2.10
3544 3612 8.554528 CCAGTACATGATTCAACAAGCTATAAG 58.445 37.037 0.00 0.00 0.00 1.73
3545 3613 7.498900 CCCAGTACATGATTCAACAAGCTATAA 59.501 37.037 0.00 0.00 0.00 0.98
3546 3614 6.992123 CCCAGTACATGATTCAACAAGCTATA 59.008 38.462 0.00 0.00 0.00 1.31
3547 3615 5.824624 CCCAGTACATGATTCAACAAGCTAT 59.175 40.000 0.00 0.00 0.00 2.97
3548 3616 5.045942 TCCCAGTACATGATTCAACAAGCTA 60.046 40.000 0.00 0.00 0.00 3.32
3549 3617 4.012374 CCCAGTACATGATTCAACAAGCT 58.988 43.478 0.00 0.00 0.00 3.74
3550 3618 4.009675 TCCCAGTACATGATTCAACAAGC 58.990 43.478 0.00 0.00 0.00 4.01
3551 3619 5.122869 CACTCCCAGTACATGATTCAACAAG 59.877 44.000 0.00 0.00 0.00 3.16
3552 3620 5.003160 CACTCCCAGTACATGATTCAACAA 58.997 41.667 0.00 0.00 0.00 2.83
3553 3621 4.285775 TCACTCCCAGTACATGATTCAACA 59.714 41.667 0.00 0.00 0.00 3.33
3554 3622 4.631813 GTCACTCCCAGTACATGATTCAAC 59.368 45.833 0.00 0.00 0.00 3.18
3555 3623 4.323485 GGTCACTCCCAGTACATGATTCAA 60.323 45.833 0.00 0.00 0.00 2.69
3556 3624 3.197766 GGTCACTCCCAGTACATGATTCA 59.802 47.826 0.00 0.00 0.00 2.57
3557 3625 3.452627 AGGTCACTCCCAGTACATGATTC 59.547 47.826 0.00 0.00 36.75 2.52
3558 3626 3.198635 CAGGTCACTCCCAGTACATGATT 59.801 47.826 0.00 0.00 36.75 2.57
3559 3627 2.768527 CAGGTCACTCCCAGTACATGAT 59.231 50.000 0.00 0.00 36.75 2.45
3560 3628 2.179427 CAGGTCACTCCCAGTACATGA 58.821 52.381 0.00 0.00 36.75 3.07
3561 3629 2.179427 TCAGGTCACTCCCAGTACATG 58.821 52.381 0.00 0.00 36.75 3.21
3562 3630 2.623418 TCAGGTCACTCCCAGTACAT 57.377 50.000 0.00 0.00 36.75 2.29
3563 3631 2.248248 CTTCAGGTCACTCCCAGTACA 58.752 52.381 0.00 0.00 36.75 2.90
3564 3632 1.066787 GCTTCAGGTCACTCCCAGTAC 60.067 57.143 0.00 0.00 36.75 2.73
3565 3633 1.203187 AGCTTCAGGTCACTCCCAGTA 60.203 52.381 0.00 0.00 36.75 2.74
3566 3634 0.472734 AGCTTCAGGTCACTCCCAGT 60.473 55.000 0.00 0.00 36.75 4.00
3567 3635 0.248843 GAGCTTCAGGTCACTCCCAG 59.751 60.000 1.01 0.00 41.81 4.45
3568 3636 0.471780 TGAGCTTCAGGTCACTCCCA 60.472 55.000 4.56 0.00 46.24 4.37
3569 3637 2.366469 TGAGCTTCAGGTCACTCCC 58.634 57.895 4.56 0.00 46.24 4.30
3575 3643 0.179062 ATGCGGATGAGCTTCAGGTC 60.179 55.000 0.00 0.00 42.48 3.85
3576 3644 0.463295 CATGCGGATGAGCTTCAGGT 60.463 55.000 12.09 0.00 38.13 4.00
3577 3645 0.179065 TCATGCGGATGAGCTTCAGG 60.179 55.000 16.33 0.00 33.40 3.86
3578 3646 1.880271 ATCATGCGGATGAGCTTCAG 58.120 50.000 24.15 0.00 42.01 3.02
3579 3647 2.102925 TGTATCATGCGGATGAGCTTCA 59.897 45.455 24.15 16.13 42.01 3.02
3580 3648 2.478134 GTGTATCATGCGGATGAGCTTC 59.522 50.000 24.15 14.05 42.01 3.86
3581 3649 2.103771 AGTGTATCATGCGGATGAGCTT 59.896 45.455 24.15 10.92 42.01 3.74
3582 3650 1.690893 AGTGTATCATGCGGATGAGCT 59.309 47.619 24.15 15.66 42.01 4.09
3583 3651 1.797046 CAGTGTATCATGCGGATGAGC 59.203 52.381 24.15 18.69 42.01 4.26
3584 3652 2.410939 CCAGTGTATCATGCGGATGAG 58.589 52.381 24.15 9.83 42.01 2.90
3585 3653 1.070601 CCCAGTGTATCATGCGGATGA 59.929 52.381 22.37 22.37 42.92 2.92
3586 3654 1.202687 ACCCAGTGTATCATGCGGATG 60.203 52.381 11.15 11.15 36.72 3.51
3587 3655 1.131638 ACCCAGTGTATCATGCGGAT 58.868 50.000 0.00 0.00 40.14 4.18
3588 3656 0.908910 AACCCAGTGTATCATGCGGA 59.091 50.000 0.00 0.00 0.00 5.54
3589 3657 1.016627 CAACCCAGTGTATCATGCGG 58.983 55.000 0.00 0.00 0.00 5.69
3590 3658 1.737838 ACAACCCAGTGTATCATGCG 58.262 50.000 0.00 0.00 0.00 4.73
3591 3659 3.605634 TGTACAACCCAGTGTATCATGC 58.394 45.455 0.00 0.00 36.42 4.06
3592 3660 5.427378 TCATGTACAACCCAGTGTATCATG 58.573 41.667 0.00 14.74 40.36 3.07
3593 3661 5.674525 CTCATGTACAACCCAGTGTATCAT 58.325 41.667 0.00 0.00 36.42 2.45
3594 3662 5.084818 CTCATGTACAACCCAGTGTATCA 57.915 43.478 0.00 0.00 36.42 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.