Multiple sequence alignment - TraesCS7D01G521000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G521000 chr7D 100.000 7510 0 0 1 7510 618317117 618324626 0.000000e+00 13869.0
1 TraesCS7D01G521000 chr7D 88.448 277 29 3 5576 5850 133352753 133352478 1.560000e-86 331.0
2 TraesCS7D01G521000 chr7D 95.146 103 4 1 4246 4348 615461469 615461368 2.170000e-35 161.0
3 TraesCS7D01G521000 chr7D 82.105 95 16 1 118 212 132858910 132859003 6.250000e-11 80.5
4 TraesCS7D01G521000 chr7D 95.349 43 2 0 640 682 13483824 13483782 1.350000e-07 69.4
5 TraesCS7D01G521000 chr7A 95.813 3511 132 6 755 4251 712055365 712058874 0.000000e+00 5655.0
6 TraesCS7D01G521000 chr7A 91.901 2951 168 26 4588 7510 712059293 712062200 0.000000e+00 4060.0
7 TraesCS7D01G521000 chr7A 89.844 256 7 7 4333 4588 712058873 712059109 2.030000e-80 311.0
8 TraesCS7D01G521000 chr7B 97.246 2360 61 2 1893 4251 712732926 712735282 0.000000e+00 3995.0
9 TraesCS7D01G521000 chr7B 93.294 1521 70 12 5245 6743 712736662 712738172 0.000000e+00 2215.0
10 TraesCS7D01G521000 chr7B 94.525 968 51 2 755 1721 712729645 712730611 0.000000e+00 1493.0
11 TraesCS7D01G521000 chr7B 96.799 656 21 0 4588 5243 712735717 712736372 0.000000e+00 1096.0
12 TraesCS7D01G521000 chr7B 89.780 773 66 10 6741 7506 712738209 712738975 0.000000e+00 977.0
13 TraesCS7D01G521000 chr7B 94.922 256 13 0 4333 4588 712735281 712735536 1.170000e-107 401.0
14 TraesCS7D01G521000 chr7B 92.025 163 13 0 1717 1879 712732714 712732876 5.860000e-56 230.0
15 TraesCS7D01G521000 chr7B 97.849 93 2 0 4246 4338 483787735 483787827 2.170000e-35 161.0
16 TraesCS7D01G521000 chr7B 79.012 243 37 10 236 474 159180684 159180452 3.630000e-33 154.0
17 TraesCS7D01G521000 chr7B 91.525 59 5 0 6685 6743 744737053 744736995 1.740000e-11 82.4
18 TraesCS7D01G521000 chr7B 82.222 90 14 2 127 215 245207847 245207759 8.080000e-10 76.8
19 TraesCS7D01G521000 chr7B 88.889 63 4 2 627 689 690198686 690198745 2.910000e-09 75.0
20 TraesCS7D01G521000 chr2B 90.625 288 21 6 5577 5861 783944891 783945175 1.980000e-100 377.0
21 TraesCS7D01G521000 chr2B 77.660 470 84 8 11 463 644615228 644614763 4.470000e-67 267.0
22 TraesCS7D01G521000 chr2B 78.689 244 36 11 243 481 572689822 572689590 1.690000e-31 148.0
23 TraesCS7D01G521000 chr2B 92.000 50 1 3 635 683 62379281 62379328 4.860000e-07 67.6
24 TraesCS7D01G521000 chr2D 88.525 305 30 4 5572 5874 332586759 332586458 1.540000e-96 364.0
25 TraesCS7D01G521000 chr1D 88.462 286 30 3 5575 5857 444354290 444354575 7.220000e-90 342.0
26 TraesCS7D01G521000 chr1D 96.117 103 2 2 4247 4347 197821565 197821667 4.660000e-37 167.0
27 TraesCS7D01G521000 chr1D 90.833 120 7 3 4237 4355 488954014 488953898 2.810000e-34 158.0
28 TraesCS7D01G521000 chr1D 77.016 248 43 10 236 479 267803088 267803325 6.120000e-26 130.0
29 TraesCS7D01G521000 chr1D 83.333 90 13 2 127 215 154018538 154018450 1.740000e-11 82.4
30 TraesCS7D01G521000 chr1D 85.294 68 7 2 149 215 403070931 403070996 4.860000e-07 67.6
31 TraesCS7D01G521000 chr5A 88.070 285 28 5 5575 5857 94800178 94799898 4.340000e-87 333.0
32 TraesCS7D01G521000 chr5A 91.818 110 5 4 4242 4348 306880880 306880988 4.690000e-32 150.0
33 TraesCS7D01G521000 chr5A 81.921 177 28 4 195 368 392028649 392028824 6.070000e-31 147.0
34 TraesCS7D01G521000 chr5A 84.444 90 12 2 127 215 338569867 338569779 3.730000e-13 87.9
35 TraesCS7D01G521000 chr5B 87.719 285 32 3 5575 5857 112530934 112531217 5.620000e-86 329.0
36 TraesCS7D01G521000 chr5B 85.135 148 19 3 308 454 37569172 37569317 1.690000e-31 148.0
37 TraesCS7D01G521000 chr5B 84.211 152 20 4 304 454 522024188 522024336 2.180000e-30 145.0
38 TraesCS7D01G521000 chr5B 89.831 59 6 0 6685 6743 30692509 30692567 8.080000e-10 76.8
39 TraesCS7D01G521000 chr5B 89.831 59 6 0 6685 6743 30739836 30739894 8.080000e-10 76.8
40 TraesCS7D01G521000 chr5B 81.250 96 17 1 117 212 255228603 255228509 8.080000e-10 76.8
41 TraesCS7D01G521000 chr5B 80.000 100 18 2 118 216 439261016 439261114 1.050000e-08 73.1
42 TraesCS7D01G521000 chr3D 87.719 285 31 3 5575 5857 549101993 549101711 5.620000e-86 329.0
43 TraesCS7D01G521000 chr3D 81.308 214 30 6 236 447 574784492 574784697 1.680000e-36 165.0
44 TraesCS7D01G521000 chr3D 85.811 148 18 3 308 454 397386306 397386161 3.630000e-33 154.0
45 TraesCS7D01G521000 chr3D 78.903 237 38 10 236 469 567489323 567489096 4.690000e-32 150.0
46 TraesCS7D01G521000 chr3D 79.798 99 18 2 118 215 1628919 1629016 3.760000e-08 71.3
47 TraesCS7D01G521000 chr1A 78.815 439 64 16 258 682 557891288 557890865 1.240000e-67 268.0
48 TraesCS7D01G521000 chr1A 78.977 176 30 5 308 480 1106679 1106850 6.160000e-21 113.0
49 TraesCS7D01G521000 chr1A 78.977 176 30 5 308 480 1112522 1112693 6.160000e-21 113.0
50 TraesCS7D01G521000 chr1A 78.409 176 31 5 308 480 1100640 1100811 2.870000e-19 108.0
51 TraesCS7D01G521000 chr1A 81.651 109 10 9 588 691 533214971 533214868 1.740000e-11 82.4
52 TraesCS7D01G521000 chr1A 87.692 65 6 2 149 212 58706686 58706623 2.910000e-09 75.0
53 TraesCS7D01G521000 chr1A 86.885 61 7 1 644 704 286005121 286005180 4.860000e-07 67.6
54 TraesCS7D01G521000 chr6D 74.958 595 117 18 106 681 355883768 355884349 2.090000e-60 244.0
55 TraesCS7D01G521000 chr6D 96.939 98 2 1 4245 4342 63731599 63731503 6.030000e-36 163.0
56 TraesCS7D01G521000 chr6D 81.690 142 23 3 308 447 453225886 453225746 1.710000e-21 115.0
57 TraesCS7D01G521000 chr6B 74.132 576 115 19 128 682 536860265 536860827 2.750000e-49 207.0
58 TraesCS7D01G521000 chr6B 80.808 99 17 2 118 215 710594 710691 8.080000e-10 76.8
59 TraesCS7D01G521000 chr6B 80.808 99 17 2 118 215 20747429 20747526 8.080000e-10 76.8
60 TraesCS7D01G521000 chr6B 81.053 95 17 1 118 212 156406271 156406364 2.910000e-09 75.0
61 TraesCS7D01G521000 chr6B 81.053 95 17 1 118 212 204171755 204171848 2.910000e-09 75.0
62 TraesCS7D01G521000 chr6B 88.525 61 7 0 6683 6743 713913907 713913967 2.910000e-09 75.0
63 TraesCS7D01G521000 chr3B 77.108 332 48 19 118 443 747569102 747569411 4.660000e-37 167.0
64 TraesCS7D01G521000 chr3B 97.436 39 0 1 647 684 59705681 59705643 1.750000e-06 65.8
65 TraesCS7D01G521000 chr4A 98.913 92 1 0 4250 4341 422945192 422945101 1.680000e-36 165.0
66 TraesCS7D01G521000 chr5D 80.631 222 31 8 236 454 334015167 334015379 2.170000e-35 161.0
67 TraesCS7D01G521000 chr5D 80.631 222 31 8 236 454 334017728 334017516 2.170000e-35 161.0
68 TraesCS7D01G521000 chr5D 83.784 148 21 3 308 454 220679566 220679711 3.650000e-28 137.0
69 TraesCS7D01G521000 chr5D 90.909 55 5 0 6685 6739 538535329 538535275 2.910000e-09 75.0
70 TraesCS7D01G521000 chr5D 90.909 55 5 0 6685 6739 538536096 538536042 2.910000e-09 75.0
71 TraesCS7D01G521000 chr5D 81.395 86 15 1 127 212 125996436 125996352 1.350000e-07 69.4
72 TraesCS7D01G521000 chr2A 92.661 109 7 1 4234 4341 686840764 686840872 1.010000e-33 156.0
73 TraesCS7D01G521000 chr4D 75.000 392 69 21 297 682 487787433 487787801 3.630000e-33 154.0
74 TraesCS7D01G521000 chr4D 92.661 109 3 5 4250 4355 119412783 119412677 1.310000e-32 152.0
75 TraesCS7D01G521000 chr6A 78.355 231 34 11 244 469 530592487 530592268 1.310000e-27 135.0
76 TraesCS7D01G521000 chr6A 79.747 158 26 6 314 469 455945602 455945449 7.970000e-20 110.0
77 TraesCS7D01G521000 chr6A 89.831 59 6 0 149 207 579829400 579829458 8.080000e-10 76.8
78 TraesCS7D01G521000 chr4B 91.525 59 5 0 6685 6743 659356641 659356699 1.740000e-11 82.4
79 TraesCS7D01G521000 chr4B 79.208 101 15 6 127 225 88353779 88353683 1.750000e-06 65.8
80 TraesCS7D01G521000 chr1B 83.333 90 13 2 127 215 112198344 112198256 1.740000e-11 82.4
81 TraesCS7D01G521000 chr1B 94.737 38 1 1 647 683 15199205 15199242 2.930000e-04 58.4
82 TraesCS7D01G521000 chrUn 89.831 59 6 0 6685 6743 272942780 272942722 8.080000e-10 76.8
83 TraesCS7D01G521000 chrUn 79.245 106 19 3 106 209 60377219 60377323 3.760000e-08 71.3
84 TraesCS7D01G521000 chrUn 79.798 99 18 2 118 215 290641692 290641789 3.760000e-08 71.3
85 TraesCS7D01G521000 chrUn 79.798 99 18 2 118 215 290647417 290647514 3.760000e-08 71.3
86 TraesCS7D01G521000 chrUn 81.111 90 15 2 127 215 349784993 349784905 3.760000e-08 71.3
87 TraesCS7D01G521000 chrUn 85.938 64 9 0 149 212 96148819 96148882 1.350000e-07 69.4
88 TraesCS7D01G521000 chr3A 81.250 96 15 3 118 212 709777305 709777212 2.910000e-09 75.0
89 TraesCS7D01G521000 chr3A 80.000 85 10 6 259 336 492704495 492704411 1.000000e-03 56.5
90 TraesCS7D01G521000 chr3A 79.121 91 10 9 254 336 60295897 60295808 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G521000 chr7D 618317117 618324626 7509 False 13869.000000 13869 100.000000 1 7510 1 chr7D.!!$F2 7509
1 TraesCS7D01G521000 chr7A 712055365 712062200 6835 False 3342.000000 5655 92.519333 755 7510 3 chr7A.!!$F1 6755
2 TraesCS7D01G521000 chr7B 712729645 712738975 9330 False 1486.714286 3995 94.084429 755 7506 7 chr7B.!!$F3 6751
3 TraesCS7D01G521000 chr6D 355883768 355884349 581 False 244.000000 244 74.958000 106 681 1 chr6D.!!$F1 575
4 TraesCS7D01G521000 chr6B 536860265 536860827 562 False 207.000000 207 74.132000 128 682 1 chr6B.!!$F5 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 270 0.031585 GTTTGCCGAGGTGAAAACCC 59.968 55.000 0.00 0.00 0.00 4.11 F
619 633 0.165079 GGTGGCGTGTGTTTGTATCG 59.835 55.000 0.00 0.00 0.00 2.92 F
638 652 0.447801 GGTGCGTCTGTATTGGCTTG 59.552 55.000 0.00 0.00 0.00 4.01 F
1629 1650 0.178068 TTGGTTCCGAGCTGCCTATC 59.822 55.000 0.00 0.00 0.00 2.08 F
1649 1670 0.249657 CCCTGAGACTATGCTTCCGC 60.250 60.000 0.00 0.00 0.00 5.54 F
1797 3925 0.328592 TTACCGCTATTGCCCAACCA 59.671 50.000 0.00 0.00 35.36 3.67 F
1837 3965 0.744414 TAGCTGAAAGATGCACGGGC 60.744 55.000 0.34 0.34 36.80 6.13 F
3412 5577 1.199327 CATGATTCTGCCATCATCCGC 59.801 52.381 0.00 0.00 41.20 5.54 F
4623 6972 0.106149 CTACCATACCCCTTCCGCAC 59.894 60.000 0.00 0.00 0.00 5.34 F
5119 7468 1.135888 TCGGTCGACATACACACTTCG 60.136 52.381 18.91 7.51 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1216 0.181350 GGATGTGCGGGAGAAGGATT 59.819 55.000 0.00 0.0 0.00 3.01 R
1629 1650 0.390860 CGGAAGCATAGTCTCAGGGG 59.609 60.000 0.00 0.0 0.00 4.79 R
1942 4106 3.004839 CCATCTGGTCAGGTATGTCTACG 59.995 52.174 0.00 0.0 0.00 3.51 R
3484 5649 1.544724 GCTCTGAGATATCCGAGCCT 58.455 55.000 19.55 0.0 42.20 4.58 R
3490 5655 5.757808 GTCTTCCAAAAGCTCTGAGATATCC 59.242 44.000 9.28 0.0 32.18 2.59 R
3679 5844 4.901250 AGTTTTCCAATGGACACCTCAAAT 59.099 37.500 0.00 0.0 0.00 2.32 R
3971 6136 5.243507 CACTCAGATCTGTATGTGCCTCTAT 59.756 44.000 21.92 0.0 0.00 1.98 R
5119 7468 0.323725 ATGGGTGATGCCAAGGTGTC 60.324 55.000 0.00 0.0 39.65 3.67 R
6068 8708 1.198637 GTGCACCTTCTTCAGCATGTC 59.801 52.381 5.22 0.0 39.43 3.06 R
6843 9542 0.948623 TGTGTCCGCCTGTTCGAATG 60.949 55.000 0.00 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.763931 TTGGGGATGTTCAGGGTTG 57.236 52.632 0.00 0.00 0.00 3.77
19 20 0.114168 TTGGGGATGTTCAGGGTTGG 59.886 55.000 0.00 0.00 0.00 3.77
20 21 1.000359 GGGGATGTTCAGGGTTGGG 60.000 63.158 0.00 0.00 0.00 4.12
21 22 1.000359 GGGATGTTCAGGGTTGGGG 60.000 63.158 0.00 0.00 0.00 4.96
22 23 1.506028 GGGATGTTCAGGGTTGGGGA 61.506 60.000 0.00 0.00 0.00 4.81
23 24 0.407918 GGATGTTCAGGGTTGGGGAA 59.592 55.000 0.00 0.00 0.00 3.97
24 25 1.616994 GGATGTTCAGGGTTGGGGAAG 60.617 57.143 0.00 0.00 0.00 3.46
25 26 0.409484 ATGTTCAGGGTTGGGGAAGG 59.591 55.000 0.00 0.00 0.00 3.46
26 27 0.699577 TGTTCAGGGTTGGGGAAGGA 60.700 55.000 0.00 0.00 0.00 3.36
27 28 0.038310 GTTCAGGGTTGGGGAAGGAG 59.962 60.000 0.00 0.00 0.00 3.69
28 29 1.140134 TTCAGGGTTGGGGAAGGAGG 61.140 60.000 0.00 0.00 0.00 4.30
29 30 2.204306 AGGGTTGGGGAAGGAGGG 60.204 66.667 0.00 0.00 0.00 4.30
30 31 2.204244 GGGTTGGGGAAGGAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
31 32 2.613482 GGGTTGGGGAAGGAGGGAC 61.613 68.421 0.00 0.00 0.00 4.46
32 33 2.613482 GGTTGGGGAAGGAGGGACC 61.613 68.421 0.00 0.00 39.35 4.46
46 47 4.144703 GACCTTCCCGCCCGTCTC 62.145 72.222 0.00 0.00 0.00 3.36
47 48 4.698625 ACCTTCCCGCCCGTCTCT 62.699 66.667 0.00 0.00 0.00 3.10
48 49 3.391382 CCTTCCCGCCCGTCTCTT 61.391 66.667 0.00 0.00 0.00 2.85
49 50 2.663196 CTTCCCGCCCGTCTCTTT 59.337 61.111 0.00 0.00 0.00 2.52
50 51 1.003718 CTTCCCGCCCGTCTCTTTT 60.004 57.895 0.00 0.00 0.00 2.27
51 52 1.298859 CTTCCCGCCCGTCTCTTTTG 61.299 60.000 0.00 0.00 0.00 2.44
52 53 2.032071 CCCGCCCGTCTCTTTTGT 59.968 61.111 0.00 0.00 0.00 2.83
53 54 1.599797 CCCGCCCGTCTCTTTTGTT 60.600 57.895 0.00 0.00 0.00 2.83
54 55 1.574428 CCGCCCGTCTCTTTTGTTG 59.426 57.895 0.00 0.00 0.00 3.33
55 56 1.164041 CCGCCCGTCTCTTTTGTTGT 61.164 55.000 0.00 0.00 0.00 3.32
56 57 0.234884 CGCCCGTCTCTTTTGTTGTC 59.765 55.000 0.00 0.00 0.00 3.18
57 58 1.594331 GCCCGTCTCTTTTGTTGTCT 58.406 50.000 0.00 0.00 0.00 3.41
58 59 1.531578 GCCCGTCTCTTTTGTTGTCTC 59.468 52.381 0.00 0.00 0.00 3.36
59 60 1.792949 CCCGTCTCTTTTGTTGTCTCG 59.207 52.381 0.00 0.00 0.00 4.04
60 61 1.792949 CCGTCTCTTTTGTTGTCTCGG 59.207 52.381 0.00 0.00 0.00 4.63
61 62 1.192534 CGTCTCTTTTGTTGTCTCGGC 59.807 52.381 0.00 0.00 0.00 5.54
62 63 2.484889 GTCTCTTTTGTTGTCTCGGCT 58.515 47.619 0.00 0.00 0.00 5.52
63 64 3.650139 GTCTCTTTTGTTGTCTCGGCTA 58.350 45.455 0.00 0.00 0.00 3.93
64 65 3.429207 GTCTCTTTTGTTGTCTCGGCTAC 59.571 47.826 0.00 0.00 0.00 3.58
65 66 2.400399 TCTTTTGTTGTCTCGGCTACG 58.600 47.619 0.00 0.00 42.74 3.51
66 67 2.132762 CTTTTGTTGTCTCGGCTACGT 58.867 47.619 0.00 0.00 41.85 3.57
67 68 1.493772 TTTGTTGTCTCGGCTACGTG 58.506 50.000 0.00 0.00 41.85 4.49
68 69 0.942410 TTGTTGTCTCGGCTACGTGC 60.942 55.000 0.00 0.00 41.85 5.34
77 78 4.814294 GCTACGTGCCCCGGTCAG 62.814 72.222 0.00 0.00 42.24 3.51
78 79 3.066190 CTACGTGCCCCGGTCAGA 61.066 66.667 0.00 0.00 42.24 3.27
79 80 3.064987 CTACGTGCCCCGGTCAGAG 62.065 68.421 0.00 0.00 42.24 3.35
80 81 3.572447 TACGTGCCCCGGTCAGAGA 62.572 63.158 0.00 0.00 42.24 3.10
81 82 2.849096 TACGTGCCCCGGTCAGAGAT 62.849 60.000 0.00 0.00 42.24 2.75
82 83 2.187946 GTGCCCCGGTCAGAGATG 59.812 66.667 0.00 0.00 0.00 2.90
83 84 3.083349 TGCCCCGGTCAGAGATGG 61.083 66.667 0.00 0.00 0.00 3.51
84 85 2.764128 GCCCCGGTCAGAGATGGA 60.764 66.667 0.00 0.00 0.00 3.41
85 86 2.801631 GCCCCGGTCAGAGATGGAG 61.802 68.421 0.00 0.00 0.00 3.86
86 87 1.381872 CCCCGGTCAGAGATGGAGT 60.382 63.158 0.00 0.00 0.00 3.85
87 88 0.978146 CCCCGGTCAGAGATGGAGTT 60.978 60.000 0.00 0.00 0.00 3.01
88 89 0.176680 CCCGGTCAGAGATGGAGTTG 59.823 60.000 0.00 0.00 0.00 3.16
89 90 0.176680 CCGGTCAGAGATGGAGTTGG 59.823 60.000 0.00 0.00 0.00 3.77
90 91 0.898320 CGGTCAGAGATGGAGTTGGT 59.102 55.000 0.00 0.00 0.00 3.67
91 92 1.404717 CGGTCAGAGATGGAGTTGGTG 60.405 57.143 0.00 0.00 0.00 4.17
92 93 1.677217 GGTCAGAGATGGAGTTGGTGC 60.677 57.143 0.00 0.00 0.00 5.01
93 94 0.615331 TCAGAGATGGAGTTGGTGCC 59.385 55.000 0.00 0.00 0.00 5.01
94 95 0.325933 CAGAGATGGAGTTGGTGCCA 59.674 55.000 0.00 0.00 38.78 4.92
96 97 1.064906 AGAGATGGAGTTGGTGCCATG 60.065 52.381 0.00 0.00 44.60 3.66
97 98 0.033796 AGATGGAGTTGGTGCCATGG 60.034 55.000 7.63 7.63 44.60 3.66
98 99 0.034186 GATGGAGTTGGTGCCATGGA 60.034 55.000 18.40 0.00 44.60 3.41
99 100 0.323725 ATGGAGTTGGTGCCATGGAC 60.324 55.000 18.40 10.81 43.04 4.02
100 101 2.040544 GGAGTTGGTGCCATGGACG 61.041 63.158 18.40 0.00 0.00 4.79
101 102 2.672996 AGTTGGTGCCATGGACGC 60.673 61.111 18.40 13.38 0.00 5.19
102 103 3.747976 GTTGGTGCCATGGACGCC 61.748 66.667 23.86 23.86 38.22 5.68
103 104 4.277009 TTGGTGCCATGGACGCCA 62.277 61.111 27.34 27.34 45.70 5.69
104 105 4.720902 TGGTGCCATGGACGCCAG 62.721 66.667 27.34 0.00 42.63 4.85
110 111 4.033776 CATGGACGCCAGGGTGGT 62.034 66.667 3.63 0.00 40.46 4.16
122 123 4.912395 GGTGGTGGCCTTGGTGCA 62.912 66.667 3.32 0.00 0.00 4.57
158 159 1.357258 GACTCATGCGCTGTCTGGTG 61.357 60.000 9.73 0.00 0.00 4.17
166 167 2.042831 GCTGTCTGGTGACCATGGC 61.043 63.158 13.04 5.35 42.28 4.40
173 174 3.055719 GTGACCATGGCCGTGTGG 61.056 66.667 23.39 20.12 41.35 4.17
188 189 3.006133 TGGGCGGCATGGTGACTA 61.006 61.111 12.47 0.00 0.00 2.59
190 191 2.203070 GGCGGCATGGTGACTAGG 60.203 66.667 3.07 0.00 0.00 3.02
198 199 1.623311 CATGGTGACTAGGGTGTGTCA 59.377 52.381 0.00 0.00 40.39 3.58
202 203 2.607187 GTGACTAGGGTGTGTCATTCG 58.393 52.381 0.00 0.00 43.75 3.34
207 208 0.984230 AGGGTGTGTCATTCGATGGT 59.016 50.000 0.00 0.00 0.00 3.55
215 216 0.676466 TCATTCGATGGTGGTGGTGC 60.676 55.000 0.00 0.00 0.00 5.01
218 219 4.697756 CGATGGTGGTGGTGCGGT 62.698 66.667 0.00 0.00 0.00 5.68
232 233 3.203442 CGGTTGCCGGTAGCTCTA 58.797 61.111 1.90 0.00 44.15 2.43
235 236 1.583054 GGTTGCCGGTAGCTCTATTG 58.417 55.000 1.90 0.00 44.23 1.90
236 237 1.583054 GTTGCCGGTAGCTCTATTGG 58.417 55.000 1.90 0.00 44.23 3.16
237 238 1.134491 GTTGCCGGTAGCTCTATTGGT 60.134 52.381 1.90 0.00 44.23 3.67
238 239 0.464036 TGCCGGTAGCTCTATTGGTG 59.536 55.000 1.90 0.00 44.23 4.17
239 240 0.750850 GCCGGTAGCTCTATTGGTGA 59.249 55.000 1.90 0.00 38.99 4.02
240 241 1.538419 GCCGGTAGCTCTATTGGTGAC 60.538 57.143 1.90 0.00 38.99 3.67
241 242 1.754803 CCGGTAGCTCTATTGGTGACA 59.245 52.381 0.00 0.00 39.83 3.58
251 253 5.290493 TCTATTGGTGACAGTGAGTGTTT 57.710 39.130 0.00 0.00 44.54 2.83
254 256 0.663153 GGTGACAGTGAGTGTTTGCC 59.337 55.000 0.00 0.00 40.56 4.52
256 258 0.176910 TGACAGTGAGTGTTTGCCGA 59.823 50.000 0.00 0.00 40.56 5.54
267 270 0.031585 GTTTGCCGAGGTGAAAACCC 59.968 55.000 0.00 0.00 0.00 4.11
283 286 2.088104 ACCCACTCTGACTTGTCAGA 57.912 50.000 25.83 25.83 43.68 3.27
289 292 1.734477 CTGACTTGTCAGACCGGCG 60.734 63.158 22.18 0.00 39.99 6.46
303 306 3.925238 GGCGGCGACAGCGTTATG 61.925 66.667 12.98 0.00 46.35 1.90
305 308 2.508439 CGGCGACAGCGTTATGGT 60.508 61.111 0.00 0.00 46.35 3.55
336 339 4.812476 TGAAGGCATCGTCGCGGG 62.812 66.667 6.13 0.00 0.00 6.13
337 340 4.814294 GAAGGCATCGTCGCGGGT 62.814 66.667 6.13 0.00 0.00 5.28
342 345 4.794439 CATCGTCGCGGGTGCTCA 62.794 66.667 6.13 0.00 39.65 4.26
345 348 3.853330 CGTCGCGGGTGCTCATTG 61.853 66.667 6.13 0.00 39.65 2.82
346 349 2.742372 GTCGCGGGTGCTCATTGT 60.742 61.111 6.13 0.00 39.65 2.71
362 365 1.098712 TTGTTCGTTGTGGTGCTCCC 61.099 55.000 1.59 0.00 0.00 4.30
366 369 3.948719 GTTGTGGTGCTCCCGGGA 61.949 66.667 25.06 25.06 35.15 5.14
372 375 2.434774 GTGCTCCCGGGAAAACCT 59.565 61.111 26.68 0.00 36.97 3.50
373 376 1.971695 GTGCTCCCGGGAAAACCTG 60.972 63.158 26.68 13.05 36.97 4.00
376 379 0.748367 GCTCCCGGGAAAACCTGATC 60.748 60.000 26.68 1.37 36.97 2.92
378 381 0.549169 TCCCGGGAAAACCTGATCCT 60.549 55.000 24.50 0.00 35.95 3.24
380 383 1.463674 CCGGGAAAACCTGATCCTTG 58.536 55.000 0.00 0.00 35.95 3.61
383 386 2.357154 CGGGAAAACCTGATCCTTGGAT 60.357 50.000 1.18 1.18 35.95 3.41
386 389 4.344104 GGAAAACCTGATCCTTGGATTGA 58.656 43.478 3.43 0.00 32.75 2.57
390 393 1.139654 CCTGATCCTTGGATTGAGCGA 59.860 52.381 3.43 0.00 0.00 4.93
394 397 0.464373 TCCTTGGATTGAGCGATGGC 60.464 55.000 0.00 0.00 40.37 4.40
418 421 3.691342 CCGGTGTCGCTCCCTTCA 61.691 66.667 0.00 0.00 34.56 3.02
448 451 1.607801 GCCTTGGAGCCCATGGTTTC 61.608 60.000 20.20 7.58 46.63 2.78
449 452 0.251742 CCTTGGAGCCCATGGTTTCA 60.252 55.000 11.73 0.17 41.98 2.69
451 454 1.753073 CTTGGAGCCCATGGTTTCATC 59.247 52.381 11.73 0.83 31.53 2.92
452 455 0.703488 TGGAGCCCATGGTTTCATCA 59.297 50.000 11.73 0.00 0.00 3.07
453 456 1.288633 TGGAGCCCATGGTTTCATCAT 59.711 47.619 11.73 0.00 0.00 2.45
454 457 1.684983 GGAGCCCATGGTTTCATCATG 59.315 52.381 11.73 0.00 41.04 3.07
455 458 1.068127 GAGCCCATGGTTTCATCATGC 59.932 52.381 11.73 3.21 40.29 4.06
456 459 1.117150 GCCCATGGTTTCATCATGCT 58.883 50.000 11.73 0.00 40.29 3.79
457 460 1.068127 GCCCATGGTTTCATCATGCTC 59.932 52.381 11.73 0.00 40.29 4.26
458 461 2.662866 CCCATGGTTTCATCATGCTCT 58.337 47.619 11.73 0.00 40.29 4.09
464 467 2.751259 GGTTTCATCATGCTCTGCTTCA 59.249 45.455 0.00 0.00 0.00 3.02
465 468 3.380637 GGTTTCATCATGCTCTGCTTCAT 59.619 43.478 0.00 0.00 0.00 2.57
466 469 4.142227 GGTTTCATCATGCTCTGCTTCATT 60.142 41.667 0.00 0.00 0.00 2.57
467 470 5.408356 GTTTCATCATGCTCTGCTTCATTT 58.592 37.500 0.00 0.00 0.00 2.32
471 474 5.359860 TCATCATGCTCTGCTTCATTTCATT 59.640 36.000 0.00 0.00 0.00 2.57
474 477 2.559231 TGCTCTGCTTCATTTCATTGCA 59.441 40.909 0.00 0.00 0.00 4.08
479 482 2.629137 TGCTTCATTTCATTGCAGTGGT 59.371 40.909 9.56 0.00 0.00 4.16
480 483 3.248266 GCTTCATTTCATTGCAGTGGTC 58.752 45.455 9.56 0.00 0.00 4.02
482 485 4.482386 CTTCATTTCATTGCAGTGGTCTG 58.518 43.478 9.56 4.70 43.87 3.51
499 502 0.549950 CTGTCCATGAATGAGGGCCT 59.450 55.000 5.25 5.25 0.00 5.19
501 504 0.548031 GTCCATGAATGAGGGCCTCA 59.452 55.000 36.61 36.61 44.99 3.86
508 511 0.250513 AATGAGGGCCTCAACGACTC 59.749 55.000 37.86 9.36 44.04 3.36
510 513 1.985116 GAGGGCCTCAACGACTCCT 60.985 63.158 28.55 0.00 0.00 3.69
513 516 0.831307 GGGCCTCAACGACTCCTTAT 59.169 55.000 0.84 0.00 0.00 1.73
515 518 2.280628 GGCCTCAACGACTCCTTATTG 58.719 52.381 0.00 0.00 0.00 1.90
516 519 2.093658 GGCCTCAACGACTCCTTATTGA 60.094 50.000 0.00 0.00 0.00 2.57
522 525 5.245531 TCAACGACTCCTTATTGATGCTTT 58.754 37.500 0.00 0.00 0.00 3.51
529 543 6.449698 ACTCCTTATTGATGCTTTGTTGTTG 58.550 36.000 0.00 0.00 0.00 3.33
531 545 5.304101 TCCTTATTGATGCTTTGTTGTTGGT 59.696 36.000 0.00 0.00 0.00 3.67
539 553 3.186909 GCTTTGTTGTTGGTTTGGAGTC 58.813 45.455 0.00 0.00 0.00 3.36
540 554 3.780902 CTTTGTTGTTGGTTTGGAGTCC 58.219 45.455 0.73 0.73 0.00 3.85
549 563 1.412505 GGTTTGGAGTCCTTTGGGGTT 60.413 52.381 11.33 0.00 36.25 4.11
551 565 0.930726 TTGGAGTCCTTTGGGGTTGT 59.069 50.000 11.33 0.00 36.25 3.32
565 579 2.354203 GGGGTTGTGTTGCTGTTTTCAA 60.354 45.455 0.00 0.00 0.00 2.69
579 593 6.265196 TGCTGTTTTCAACATCTTTGTATCCT 59.735 34.615 0.00 0.00 41.26 3.24
583 597 3.620488 TCAACATCTTTGTATCCTGCCC 58.380 45.455 0.00 0.00 34.06 5.36
586 600 2.846206 ACATCTTTGTATCCTGCCCTGA 59.154 45.455 0.00 0.00 33.16 3.86
594 608 2.475371 ATCCTGCCCTGAGTGTGTGC 62.475 60.000 0.00 0.00 0.00 4.57
597 611 4.996434 GCCCTGAGTGTGTGCGCT 62.996 66.667 9.73 0.00 38.31 5.92
598 612 3.046087 CCCTGAGTGTGTGCGCTG 61.046 66.667 9.73 0.00 35.28 5.18
600 614 2.601398 CCTGAGTGTGTGCGCTGTG 61.601 63.158 9.73 0.00 35.28 3.66
602 616 2.588877 GAGTGTGTGCGCTGTGGT 60.589 61.111 9.73 0.00 35.28 4.16
603 617 2.885676 GAGTGTGTGCGCTGTGGTG 61.886 63.158 9.73 0.00 35.28 4.17
612 626 3.209097 GCTGTGGTGGCGTGTGTT 61.209 61.111 0.00 0.00 0.00 3.32
614 628 1.063972 CTGTGGTGGCGTGTGTTTG 59.936 57.895 0.00 0.00 0.00 2.93
615 629 1.653094 CTGTGGTGGCGTGTGTTTGT 61.653 55.000 0.00 0.00 0.00 2.83
616 630 0.392595 TGTGGTGGCGTGTGTTTGTA 60.393 50.000 0.00 0.00 0.00 2.41
617 631 0.948678 GTGGTGGCGTGTGTTTGTAT 59.051 50.000 0.00 0.00 0.00 2.29
618 632 1.069500 GTGGTGGCGTGTGTTTGTATC 60.069 52.381 0.00 0.00 0.00 2.24
619 633 0.165079 GGTGGCGTGTGTTTGTATCG 59.835 55.000 0.00 0.00 0.00 2.92
626 640 1.136446 GTGTGTTTGTATCGGTGCGTC 60.136 52.381 0.00 0.00 0.00 5.19
633 647 2.804647 TGTATCGGTGCGTCTGTATTG 58.195 47.619 0.00 0.00 0.00 1.90
638 652 0.447801 GGTGCGTCTGTATTGGCTTG 59.552 55.000 0.00 0.00 0.00 4.01
639 653 0.447801 GTGCGTCTGTATTGGCTTGG 59.552 55.000 0.00 0.00 0.00 3.61
641 655 0.447801 GCGTCTGTATTGGCTTGGTG 59.552 55.000 0.00 0.00 0.00 4.17
642 656 0.447801 CGTCTGTATTGGCTTGGTGC 59.552 55.000 0.00 0.00 41.94 5.01
663 681 7.777910 TGGTGCTGGTTGCTTTATATATAAAGT 59.222 33.333 31.63 0.00 46.78 2.66
672 690 8.700439 TGCTTTATATATAAAGTGGGGGAAAC 57.300 34.615 31.63 19.14 46.78 2.78
697 715 5.768317 CTTTTTCGGTAAAGGAAAGCATGA 58.232 37.500 0.00 0.00 35.08 3.07
698 716 5.776173 TTTTCGGTAAAGGAAAGCATGAA 57.224 34.783 0.00 0.00 35.08 2.57
699 717 5.371115 TTTCGGTAAAGGAAAGCATGAAG 57.629 39.130 0.00 0.00 0.00 3.02
700 718 4.280436 TCGGTAAAGGAAAGCATGAAGA 57.720 40.909 0.00 0.00 0.00 2.87
701 719 4.647611 TCGGTAAAGGAAAGCATGAAGAA 58.352 39.130 0.00 0.00 0.00 2.52
702 720 5.067273 TCGGTAAAGGAAAGCATGAAGAAA 58.933 37.500 0.00 0.00 0.00 2.52
703 721 5.533154 TCGGTAAAGGAAAGCATGAAGAAAA 59.467 36.000 0.00 0.00 0.00 2.29
704 722 6.208599 TCGGTAAAGGAAAGCATGAAGAAAAT 59.791 34.615 0.00 0.00 0.00 1.82
705 723 6.868339 CGGTAAAGGAAAGCATGAAGAAAATT 59.132 34.615 0.00 0.00 0.00 1.82
706 724 7.384932 CGGTAAAGGAAAGCATGAAGAAAATTT 59.615 33.333 0.00 0.00 0.00 1.82
707 725 9.705290 GGTAAAGGAAAGCATGAAGAAAATTTA 57.295 29.630 0.00 0.00 0.00 1.40
712 730 9.612066 AGGAAAGCATGAAGAAAATTTAAAACA 57.388 25.926 0.00 0.00 0.00 2.83
721 739 9.267084 TGAAGAAAATTTAAAACATTACCTGCC 57.733 29.630 0.00 0.00 0.00 4.85
722 740 9.267084 GAAGAAAATTTAAAACATTACCTGCCA 57.733 29.630 0.00 0.00 0.00 4.92
723 741 9.791801 AAGAAAATTTAAAACATTACCTGCCAT 57.208 25.926 0.00 0.00 0.00 4.40
724 742 9.435688 AGAAAATTTAAAACATTACCTGCCATC 57.564 29.630 0.00 0.00 0.00 3.51
725 743 9.435688 GAAAATTTAAAACATTACCTGCCATCT 57.564 29.630 0.00 0.00 0.00 2.90
732 750 8.823220 AAAACATTACCTGCCATCTAATTACT 57.177 30.769 0.00 0.00 0.00 2.24
733 751 8.823220 AAACATTACCTGCCATCTAATTACTT 57.177 30.769 0.00 0.00 0.00 2.24
734 752 9.914834 AAACATTACCTGCCATCTAATTACTTA 57.085 29.630 0.00 0.00 0.00 2.24
736 754 9.726438 ACATTACCTGCCATCTAATTACTTATC 57.274 33.333 0.00 0.00 0.00 1.75
737 755 9.167311 CATTACCTGCCATCTAATTACTTATCC 57.833 37.037 0.00 0.00 0.00 2.59
738 756 6.128138 ACCTGCCATCTAATTACTTATCCC 57.872 41.667 0.00 0.00 0.00 3.85
739 757 5.014228 ACCTGCCATCTAATTACTTATCCCC 59.986 44.000 0.00 0.00 0.00 4.81
740 758 5.014123 CCTGCCATCTAATTACTTATCCCCA 59.986 44.000 0.00 0.00 0.00 4.96
741 759 6.467194 CCTGCCATCTAATTACTTATCCCCAA 60.467 42.308 0.00 0.00 0.00 4.12
742 760 6.542821 TGCCATCTAATTACTTATCCCCAAG 58.457 40.000 0.00 0.00 0.00 3.61
743 761 6.102615 TGCCATCTAATTACTTATCCCCAAGT 59.897 38.462 0.00 0.00 41.56 3.16
744 762 6.655425 GCCATCTAATTACTTATCCCCAAGTC 59.345 42.308 0.00 0.00 39.45 3.01
745 763 7.474936 GCCATCTAATTACTTATCCCCAAGTCT 60.475 40.741 0.00 0.00 39.45 3.24
746 764 7.880195 CCATCTAATTACTTATCCCCAAGTCTG 59.120 40.741 0.00 0.00 39.45 3.51
747 765 7.374975 TCTAATTACTTATCCCCAAGTCTGG 57.625 40.000 0.00 0.00 43.10 3.86
748 766 7.136885 TCTAATTACTTATCCCCAAGTCTGGA 58.863 38.462 0.00 0.00 46.92 3.86
749 767 6.848562 AATTACTTATCCCCAAGTCTGGAT 57.151 37.500 0.00 0.00 46.92 3.41
750 768 5.888982 TTACTTATCCCCAAGTCTGGATC 57.111 43.478 0.00 0.00 46.92 3.36
751 769 3.049344 ACTTATCCCCAAGTCTGGATCC 58.951 50.000 4.20 4.20 46.92 3.36
752 770 2.887454 TATCCCCAAGTCTGGATCCA 57.113 50.000 15.27 15.27 46.92 3.41
753 771 2.219216 ATCCCCAAGTCTGGATCCAT 57.781 50.000 16.63 0.00 46.92 3.41
805 823 0.652592 CGGTAAGAAGATGCAAGCGG 59.347 55.000 0.00 0.00 0.00 5.52
807 825 1.666189 GGTAAGAAGATGCAAGCGGAC 59.334 52.381 0.00 0.00 0.00 4.79
824 842 2.281900 CGAGGCGGGGGTGAAAAA 60.282 61.111 0.00 0.00 0.00 1.94
860 878 4.320494 GCATGTTGTCCTTGACTTACTTGG 60.320 45.833 0.00 0.00 33.15 3.61
1058 1077 1.977129 CATTTTTGCCCTTCTTCCCCA 59.023 47.619 0.00 0.00 0.00 4.96
1080 1101 2.181975 CCCTTGCCTTTGATTGGTCAT 58.818 47.619 0.00 0.00 33.56 3.06
1115 1136 0.743345 GCGACCCGGCTAAACTTGAT 60.743 55.000 0.00 0.00 0.00 2.57
1118 1139 2.741878 CGACCCGGCTAAACTTGATGAT 60.742 50.000 0.00 0.00 0.00 2.45
1165 1186 4.141756 ACTTGCCATTTGTCCACATTTTCA 60.142 37.500 0.00 0.00 0.00 2.69
1171 1192 6.453943 CCATTTGTCCACATTTTCATGTACA 58.546 36.000 0.00 0.00 42.14 2.90
1172 1193 6.587226 CCATTTGTCCACATTTTCATGTACAG 59.413 38.462 0.33 0.00 42.14 2.74
1190 1211 6.202331 TGTACAGATGGAAGAGGGAATAGAA 58.798 40.000 0.00 0.00 0.00 2.10
1195 1216 5.841237 AGATGGAAGAGGGAATAGAATCGAA 59.159 40.000 0.00 0.00 0.00 3.71
1455 1476 2.304092 AGTTATGTCGCTCGTGGGATA 58.696 47.619 7.53 5.51 37.48 2.59
1469 1490 7.010183 CGCTCGTGGGATATATTACTTAATTGG 59.990 40.741 0.00 0.00 0.00 3.16
1546 1567 7.675161 TCCTGTTGAGATATGAATCAGGTAA 57.325 36.000 0.00 0.00 40.91 2.85
1564 1585 8.967664 TCAGGTAACGTAATTAATTGGCTTAT 57.032 30.769 11.05 0.00 46.39 1.73
1623 1644 0.535102 AGTGGTTTGGTTCCGAGCTG 60.535 55.000 0.00 0.00 0.00 4.24
1629 1650 0.178068 TTGGTTCCGAGCTGCCTATC 59.822 55.000 0.00 0.00 0.00 2.08
1649 1670 0.249657 CCCTGAGACTATGCTTCCGC 60.250 60.000 0.00 0.00 0.00 5.54
1653 1674 1.550524 TGAGACTATGCTTCCGCTGTT 59.449 47.619 0.00 0.00 36.97 3.16
1681 1702 3.563390 TGATCAACGTGACATGCTTTCAA 59.437 39.130 0.00 0.00 0.00 2.69
1697 1718 7.164230 TGCTTTCAAGAGGTTCTTTTTGTTA 57.836 32.000 0.00 0.00 33.78 2.41
1738 3866 5.658190 TGATGTGATGGTCATTCTCTGTCTA 59.342 40.000 0.00 0.00 0.00 2.59
1797 3925 0.328592 TTACCGCTATTGCCCAACCA 59.671 50.000 0.00 0.00 35.36 3.67
1799 3927 1.037030 ACCGCTATTGCCCAACCATG 61.037 55.000 0.00 0.00 35.36 3.66
1834 3962 4.371786 TCCTATTAGCTGAAAGATGCACG 58.628 43.478 0.00 0.00 34.07 5.34
1836 3964 1.737838 TTAGCTGAAAGATGCACGGG 58.262 50.000 0.00 0.00 34.07 5.28
1837 3965 0.744414 TAGCTGAAAGATGCACGGGC 60.744 55.000 0.34 0.34 36.80 6.13
1888 4016 6.673154 AAACTATAAATGTAGTGAACGCCC 57.327 37.500 0.00 0.00 35.20 6.13
1891 4019 7.299246 ACTATAAATGTAGTGAACGCCCTAT 57.701 36.000 0.00 0.00 33.78 2.57
1905 4069 4.189231 ACGCCCTATCTATGTTGAAACAC 58.811 43.478 0.00 0.00 42.51 3.32
1908 4072 4.508124 GCCCTATCTATGTTGAAACACTCG 59.492 45.833 0.00 0.00 42.51 4.18
1942 4106 9.624697 TCAAATGAACAATCATGTAAAAGTAGC 57.375 29.630 0.00 0.00 45.60 3.58
2260 4424 5.106442 TGCACCATACGAAACATACTACTG 58.894 41.667 0.00 0.00 0.00 2.74
2358 4522 6.442541 TCCTGTAAATTGTCTTCCCTGTTA 57.557 37.500 0.00 0.00 0.00 2.41
2438 4602 6.888088 TCATCAAATTTCATCTCAGTGGTCAT 59.112 34.615 0.00 0.00 0.00 3.06
2445 4609 2.200373 TCTCAGTGGTCATCGAGTCA 57.800 50.000 0.00 0.00 0.00 3.41
2625 4789 5.900123 TGGCTCTAGTTTCCTTCTAATAGCT 59.100 40.000 0.00 0.00 32.19 3.32
2777 4941 1.663695 CCACACAGTCAGAACGGTTT 58.336 50.000 0.00 0.00 30.93 3.27
2780 4944 1.208535 ACACAGTCAGAACGGTTTGGA 59.791 47.619 0.00 0.00 30.93 3.53
2830 4994 3.077088 AGGACCCCTCAAGTAAGTACTCA 59.923 47.826 0.00 0.00 34.99 3.41
3389 5554 6.380560 TGCAAACCTTGATTCATTGGATGATA 59.619 34.615 11.64 3.54 39.39 2.15
3412 5577 1.199327 CATGATTCTGCCATCATCCGC 59.801 52.381 0.00 0.00 41.20 5.54
3484 5649 2.413796 CGTTTCAATAAGCGGCAGTGTA 59.586 45.455 1.45 0.00 35.88 2.90
3490 5655 2.279502 TAAGCGGCAGTGTAGGCTCG 62.280 60.000 1.45 0.00 33.99 5.03
3652 5817 6.435292 AGACTGGTGGAACTAACACTAAAT 57.565 37.500 0.00 0.00 38.83 1.40
3679 5844 5.360144 CCTGGACTATTCTTCGAACCTCTTA 59.640 44.000 0.00 0.00 0.00 2.10
3971 6136 4.529109 TCTGATTCACCATTGTGTCGTA 57.471 40.909 0.00 0.00 43.26 3.43
3985 6150 3.949113 TGTGTCGTATAGAGGCACATACA 59.051 43.478 10.48 0.00 35.48 2.29
4092 6257 7.014711 TCCTATTTGTCGAGAGAGCTTTATGAT 59.985 37.037 0.00 0.00 43.49 2.45
4239 6404 8.683550 TTTAACAGACTATACACGACAATCTG 57.316 34.615 0.00 0.00 38.42 2.90
4249 6414 3.260884 ACACGACAATCTGGTTGGTATCT 59.739 43.478 5.53 0.00 42.28 1.98
4250 6415 4.464951 ACACGACAATCTGGTTGGTATCTA 59.535 41.667 5.53 0.00 42.28 1.98
4251 6416 4.804139 CACGACAATCTGGTTGGTATCTAC 59.196 45.833 5.53 0.00 42.28 2.59
4252 6417 4.710375 ACGACAATCTGGTTGGTATCTACT 59.290 41.667 5.53 0.00 42.28 2.57
4253 6418 5.163540 ACGACAATCTGGTTGGTATCTACTC 60.164 44.000 5.53 0.00 42.28 2.59
4254 6419 5.602628 GACAATCTGGTTGGTATCTACTCC 58.397 45.833 5.53 0.00 42.28 3.85
4255 6420 4.409247 ACAATCTGGTTGGTATCTACTCCC 59.591 45.833 5.53 0.00 42.28 4.30
4256 6421 4.561254 ATCTGGTTGGTATCTACTCCCT 57.439 45.455 0.00 0.00 0.00 4.20
4257 6422 3.912248 TCTGGTTGGTATCTACTCCCTC 58.088 50.000 0.00 0.00 0.00 4.30
4258 6423 2.966516 CTGGTTGGTATCTACTCCCTCC 59.033 54.545 0.00 0.00 0.00 4.30
4259 6424 1.962100 GGTTGGTATCTACTCCCTCCG 59.038 57.143 0.00 0.00 0.00 4.63
4260 6425 2.664015 GTTGGTATCTACTCCCTCCGT 58.336 52.381 0.00 0.00 0.00 4.69
4261 6426 3.435601 GGTTGGTATCTACTCCCTCCGTA 60.436 52.174 0.00 0.00 0.00 4.02
4262 6427 4.210331 GTTGGTATCTACTCCCTCCGTAA 58.790 47.826 0.00 0.00 0.00 3.18
4263 6428 4.524802 TGGTATCTACTCCCTCCGTAAA 57.475 45.455 0.00 0.00 0.00 2.01
4264 6429 4.210331 TGGTATCTACTCCCTCCGTAAAC 58.790 47.826 0.00 0.00 0.00 2.01
4265 6430 4.079558 TGGTATCTACTCCCTCCGTAAACT 60.080 45.833 0.00 0.00 0.00 2.66
4266 6431 5.132648 TGGTATCTACTCCCTCCGTAAACTA 59.867 44.000 0.00 0.00 0.00 2.24
4267 6432 6.064717 GGTATCTACTCCCTCCGTAAACTAA 58.935 44.000 0.00 0.00 0.00 2.24
4268 6433 6.718912 GGTATCTACTCCCTCCGTAAACTAAT 59.281 42.308 0.00 0.00 0.00 1.73
4269 6434 7.885399 GGTATCTACTCCCTCCGTAAACTAATA 59.115 40.741 0.00 0.00 0.00 0.98
4270 6435 9.460019 GTATCTACTCCCTCCGTAAACTAATAT 57.540 37.037 0.00 0.00 0.00 1.28
4273 6438 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
4274 6439 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
4275 6440 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4276 6441 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4277 6442 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4278 6443 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4279 6444 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4280 6445 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4281 6446 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4282 6447 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4283 6448 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4297 6462 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
4298 6463 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
4299 6464 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
4300 6465 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
4308 6473 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
4309 6474 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
4310 6475 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4311 6476 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4312 6477 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4313 6478 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4328 6493 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4329 6494 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4330 6495 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4331 6496 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4345 6510 5.079643 ACAGAGGGAGTATTTGTTTTGCAT 58.920 37.500 0.00 0.00 0.00 3.96
4578 6743 1.545841 CCAACCTAAGGTTTGAGGCC 58.454 55.000 0.00 0.00 44.33 5.19
4610 6959 1.211457 CTCCAGAGGCAAAGCTACCAT 59.789 52.381 3.44 0.00 0.00 3.55
4617 6966 1.063942 GGCAAAGCTACCATACCCCTT 60.064 52.381 0.00 0.00 0.00 3.95
4623 6972 0.106149 CTACCATACCCCTTCCGCAC 59.894 60.000 0.00 0.00 0.00 5.34
4776 7125 3.552132 TGTTTGCAGGTAGACAGTGAA 57.448 42.857 0.00 0.00 0.00 3.18
4889 7238 9.838339 CTTTGAAGGGATAGATAATAGTGTTGT 57.162 33.333 0.00 0.00 0.00 3.32
4935 7284 5.081032 GTGATCCTATTCTACCTAGCCTGT 58.919 45.833 0.00 0.00 0.00 4.00
4936 7285 5.540719 GTGATCCTATTCTACCTAGCCTGTT 59.459 44.000 0.00 0.00 0.00 3.16
5067 7416 3.766591 AGAACGTCCTTCTCAGATCACAT 59.233 43.478 0.00 0.00 33.53 3.21
5119 7468 1.135888 TCGGTCGACATACACACTTCG 60.136 52.381 18.91 7.51 0.00 3.79
5284 7921 2.366266 ACATGCAACAAATGGCTGAACT 59.634 40.909 0.00 0.00 0.00 3.01
5285 7922 2.798976 TGCAACAAATGGCTGAACTC 57.201 45.000 0.00 0.00 0.00 3.01
5295 7932 3.685139 TGGCTGAACTCTCCACTTTAG 57.315 47.619 0.00 0.00 0.00 1.85
5339 7976 6.986250 AGGAACTAATTTTCTTGCTTTCCTG 58.014 36.000 0.00 0.00 40.07 3.86
5341 7978 5.139435 ACTAATTTTCTTGCTTTCCTGGC 57.861 39.130 0.00 0.00 0.00 4.85
5396 8033 4.108699 TGATGAAAATGCGGAAATCACC 57.891 40.909 0.00 0.00 0.00 4.02
5565 8202 7.603963 AATGTTTTTGTTTCCAGTTACCAAC 57.396 32.000 0.00 0.00 0.00 3.77
5569 8206 3.823281 TGTTTCCAGTTACCAACGAGA 57.177 42.857 0.00 0.00 36.23 4.04
5570 8207 3.724374 TGTTTCCAGTTACCAACGAGAG 58.276 45.455 0.00 0.00 36.23 3.20
5613 8250 8.701895 TGGGGAATAACTTAGACTAGTAACATG 58.298 37.037 0.00 0.00 0.00 3.21
5622 8259 9.973450 ACTTAGACTAGTAACATGCATATCTTG 57.027 33.333 0.00 0.00 0.00 3.02
5771 8410 5.792741 AGCTATGCTACTCAATTCATCTCC 58.207 41.667 0.00 0.00 36.99 3.71
5873 8513 9.695155 TGGACAGTCTTATATATCAATATCCGA 57.305 33.333 0.00 0.00 30.72 4.55
5939 8579 9.787532 TTAACATAATCAATACAAGCTTTGCTC 57.212 29.630 0.00 0.00 38.25 4.26
6002 8642 7.502561 AGTGCCTCAAATTTCAGTTTACTACTT 59.497 33.333 0.00 0.00 33.85 2.24
6021 8661 8.687824 ACTACTTTGTTTGTTTCATTGACTTG 57.312 30.769 0.00 0.00 0.00 3.16
6068 8708 5.344743 TTGTACTCTTCTAGAAGCATGGG 57.655 43.478 25.04 14.67 38.28 4.00
6118 8758 0.039618 ACCCCAATGACGGATTTGCT 59.960 50.000 0.00 0.00 0.00 3.91
6139 8779 4.697352 GCTAAAGTCTTGCTGGATCTTGAA 59.303 41.667 0.00 0.00 0.00 2.69
6199 8839 3.084039 CAAGAGGCCTGCAATGAAAGTA 58.916 45.455 12.00 0.00 0.00 2.24
6305 8945 2.417379 GGAAGCGTAGACTCAGCAATGA 60.417 50.000 5.11 0.00 0.00 2.57
6355 8995 0.033504 TGAAGACAGGGTGAAGTCGC 59.966 55.000 0.00 0.00 39.67 5.19
6382 9022 2.232208 CCAATGGAGAAGAAGGGTTTGC 59.768 50.000 0.00 0.00 0.00 3.68
6440 9080 9.174166 ACATACATCTATACCCAAACTTTTGAC 57.826 33.333 3.17 0.00 40.55 3.18
6720 9382 4.126520 ACAACCCCCTAAACACATCAAT 57.873 40.909 0.00 0.00 0.00 2.57
6828 9527 6.254157 CCCAATGAAATATGTCGCAAAAAGAG 59.746 38.462 0.00 0.00 0.00 2.85
6834 9533 7.120579 TGAAATATGTCGCAAAAAGAGTATGGT 59.879 33.333 0.00 0.00 0.00 3.55
6843 9542 3.646736 AAAGAGTATGGTTAGGTGGGC 57.353 47.619 0.00 0.00 0.00 5.36
6862 9561 0.948623 CATTCGAACAGGCGGACACA 60.949 55.000 0.00 0.00 0.00 3.72
6882 9581 3.056962 ACATCTCGCTGATAGCCACTATG 60.057 47.826 0.00 0.00 38.18 2.23
6925 9624 0.804364 TAGGCAGCGCAACATTGAAG 59.196 50.000 11.47 0.00 0.00 3.02
6936 9635 4.083324 CGCAACATTGAAGGAAGCTAAGAA 60.083 41.667 0.00 0.00 0.00 2.52
6961 9660 4.932200 AGCACCAAATCGTGAAAACAAAAA 59.068 33.333 0.00 0.00 35.68 1.94
6962 9661 5.018869 GCACCAAATCGTGAAAACAAAAAC 58.981 37.500 0.00 0.00 35.68 2.43
7027 9726 6.094048 TGCGAAATTTTTGGAAAATTTGTGGA 59.906 30.769 21.88 14.85 39.23 4.02
7028 9727 6.969473 GCGAAATTTTTGGAAAATTTGTGGAA 59.031 30.769 21.88 0.00 39.23 3.53
7097 9796 7.780253 TTCGAATTTGATCATTTCTGAAACG 57.220 32.000 4.73 0.00 34.37 3.60
7203 9902 9.511144 TTTCTAAACTTTGAAGATTTTCCGAAC 57.489 29.630 0.00 0.00 32.09 3.95
7212 9911 4.404507 AGATTTTCCGAACACATGAACG 57.595 40.909 0.00 0.00 0.00 3.95
7270 9971 9.999009 GCAAGTACTGTAGTAAACTTTCTTTTT 57.001 29.630 0.00 0.00 31.52 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.114168 CCAACCCTGAACATCCCCAA 59.886 55.000 0.00 0.00 0.00 4.12
1 2 1.773635 CCAACCCTGAACATCCCCA 59.226 57.895 0.00 0.00 0.00 4.96
2 3 1.000359 CCCAACCCTGAACATCCCC 60.000 63.158 0.00 0.00 0.00 4.81
3 4 1.000359 CCCCAACCCTGAACATCCC 60.000 63.158 0.00 0.00 0.00 3.85
4 5 0.407918 TTCCCCAACCCTGAACATCC 59.592 55.000 0.00 0.00 0.00 3.51
5 6 1.616994 CCTTCCCCAACCCTGAACATC 60.617 57.143 0.00 0.00 0.00 3.06
6 7 0.409484 CCTTCCCCAACCCTGAACAT 59.591 55.000 0.00 0.00 0.00 2.71
7 8 0.699577 TCCTTCCCCAACCCTGAACA 60.700 55.000 0.00 0.00 0.00 3.18
8 9 0.038310 CTCCTTCCCCAACCCTGAAC 59.962 60.000 0.00 0.00 0.00 3.18
9 10 1.140134 CCTCCTTCCCCAACCCTGAA 61.140 60.000 0.00 0.00 0.00 3.02
10 11 1.541368 CCTCCTTCCCCAACCCTGA 60.541 63.158 0.00 0.00 0.00 3.86
11 12 2.616458 CCCTCCTTCCCCAACCCTG 61.616 68.421 0.00 0.00 0.00 4.45
12 13 2.204306 CCCTCCTTCCCCAACCCT 60.204 66.667 0.00 0.00 0.00 4.34
13 14 2.204244 TCCCTCCTTCCCCAACCC 60.204 66.667 0.00 0.00 0.00 4.11
14 15 2.613482 GGTCCCTCCTTCCCCAACC 61.613 68.421 0.00 0.00 0.00 3.77
15 16 1.541620 AGGTCCCTCCTTCCCCAAC 60.542 63.158 0.00 0.00 45.67 3.77
16 17 2.968940 AGGTCCCTCCTTCCCCAA 59.031 61.111 0.00 0.00 45.67 4.12
29 30 4.144703 GAGACGGGCGGGAAGGTC 62.145 72.222 0.00 0.00 0.00 3.85
30 31 4.698625 AGAGACGGGCGGGAAGGT 62.699 66.667 0.00 0.00 0.00 3.50
31 32 2.465055 AAAAGAGACGGGCGGGAAGG 62.465 60.000 0.00 0.00 0.00 3.46
32 33 1.003718 AAAAGAGACGGGCGGGAAG 60.004 57.895 0.00 0.00 0.00 3.46
33 34 1.302192 CAAAAGAGACGGGCGGGAA 60.302 57.895 0.00 0.00 0.00 3.97
34 35 2.047213 AACAAAAGAGACGGGCGGGA 62.047 55.000 0.00 0.00 0.00 5.14
35 36 1.599797 AACAAAAGAGACGGGCGGG 60.600 57.895 0.00 0.00 0.00 6.13
36 37 1.164041 ACAACAAAAGAGACGGGCGG 61.164 55.000 0.00 0.00 0.00 6.13
37 38 0.234884 GACAACAAAAGAGACGGGCG 59.765 55.000 0.00 0.00 0.00 6.13
38 39 1.531578 GAGACAACAAAAGAGACGGGC 59.468 52.381 0.00 0.00 0.00 6.13
39 40 1.792949 CGAGACAACAAAAGAGACGGG 59.207 52.381 0.00 0.00 0.00 5.28
40 41 1.792949 CCGAGACAACAAAAGAGACGG 59.207 52.381 0.00 0.00 0.00 4.79
41 42 1.192534 GCCGAGACAACAAAAGAGACG 59.807 52.381 0.00 0.00 0.00 4.18
42 43 2.484889 AGCCGAGACAACAAAAGAGAC 58.515 47.619 0.00 0.00 0.00 3.36
43 44 2.910688 AGCCGAGACAACAAAAGAGA 57.089 45.000 0.00 0.00 0.00 3.10
44 45 2.408704 CGTAGCCGAGACAACAAAAGAG 59.591 50.000 0.00 0.00 35.63 2.85
45 46 2.223876 ACGTAGCCGAGACAACAAAAGA 60.224 45.455 0.00 0.00 37.88 2.52
46 47 2.096909 CACGTAGCCGAGACAACAAAAG 60.097 50.000 0.00 0.00 37.88 2.27
47 48 1.862201 CACGTAGCCGAGACAACAAAA 59.138 47.619 0.00 0.00 37.88 2.44
48 49 1.493772 CACGTAGCCGAGACAACAAA 58.506 50.000 0.00 0.00 37.88 2.83
49 50 0.942410 GCACGTAGCCGAGACAACAA 60.942 55.000 0.00 0.00 37.23 2.83
50 51 1.372499 GCACGTAGCCGAGACAACA 60.372 57.895 0.00 0.00 37.23 3.33
51 52 3.460144 GCACGTAGCCGAGACAAC 58.540 61.111 0.00 0.00 37.23 3.32
60 61 4.814294 CTGACCGGGGCACGTAGC 62.814 72.222 8.94 0.00 42.24 3.58
61 62 3.064987 CTCTGACCGGGGCACGTAG 62.065 68.421 8.94 3.47 42.24 3.51
62 63 2.849096 ATCTCTGACCGGGGCACGTA 62.849 60.000 8.94 0.00 42.24 3.57
63 64 4.988716 TCTCTGACCGGGGCACGT 62.989 66.667 8.94 0.00 42.24 4.49
64 65 3.461773 ATCTCTGACCGGGGCACG 61.462 66.667 6.32 0.00 43.80 5.34
65 66 2.187946 CATCTCTGACCGGGGCAC 59.812 66.667 6.32 0.00 0.00 5.01
66 67 3.083349 CCATCTCTGACCGGGGCA 61.083 66.667 6.32 0.77 0.00 5.36
67 68 2.764128 TCCATCTCTGACCGGGGC 60.764 66.667 6.32 0.00 0.00 5.80
68 69 0.978146 AACTCCATCTCTGACCGGGG 60.978 60.000 6.32 0.00 0.00 5.73
69 70 0.176680 CAACTCCATCTCTGACCGGG 59.823 60.000 6.32 0.00 0.00 5.73
70 71 0.176680 CCAACTCCATCTCTGACCGG 59.823 60.000 0.00 0.00 0.00 5.28
71 72 0.898320 ACCAACTCCATCTCTGACCG 59.102 55.000 0.00 0.00 0.00 4.79
72 73 1.677217 GCACCAACTCCATCTCTGACC 60.677 57.143 0.00 0.00 0.00 4.02
73 74 1.677217 GGCACCAACTCCATCTCTGAC 60.677 57.143 0.00 0.00 0.00 3.51
74 75 0.615331 GGCACCAACTCCATCTCTGA 59.385 55.000 0.00 0.00 0.00 3.27
75 76 0.325933 TGGCACCAACTCCATCTCTG 59.674 55.000 0.00 0.00 0.00 3.35
76 77 1.064906 CATGGCACCAACTCCATCTCT 60.065 52.381 0.00 0.00 40.88 3.10
77 78 1.386533 CATGGCACCAACTCCATCTC 58.613 55.000 0.00 0.00 40.88 2.75
78 79 0.033796 CCATGGCACCAACTCCATCT 60.034 55.000 0.00 0.00 40.88 2.90
79 80 0.034186 TCCATGGCACCAACTCCATC 60.034 55.000 6.96 0.00 40.88 3.51
80 81 0.323725 GTCCATGGCACCAACTCCAT 60.324 55.000 6.96 0.00 43.45 3.41
81 82 1.074775 GTCCATGGCACCAACTCCA 59.925 57.895 6.96 0.00 36.70 3.86
82 83 2.040544 CGTCCATGGCACCAACTCC 61.041 63.158 6.96 0.00 0.00 3.85
83 84 2.690778 GCGTCCATGGCACCAACTC 61.691 63.158 6.96 0.00 0.00 3.01
84 85 2.672996 GCGTCCATGGCACCAACT 60.673 61.111 6.96 0.00 0.00 3.16
85 86 3.747976 GGCGTCCATGGCACCAAC 61.748 66.667 6.96 0.00 0.00 3.77
86 87 4.277009 TGGCGTCCATGGCACCAA 62.277 61.111 15.45 2.82 39.79 3.67
87 88 4.720902 CTGGCGTCCATGGCACCA 62.721 66.667 6.96 13.09 39.79 4.17
92 93 4.802051 CCACCCTGGCGTCCATGG 62.802 72.222 4.97 4.97 43.52 3.66
93 94 4.033776 ACCACCCTGGCGTCCATG 62.034 66.667 0.00 0.00 42.67 3.66
94 95 4.033776 CACCACCCTGGCGTCCAT 62.034 66.667 0.00 0.00 42.67 3.41
101 102 4.684134 CCAAGGCCACCACCCTGG 62.684 72.222 5.01 0.00 45.02 4.45
102 103 3.902112 ACCAAGGCCACCACCCTG 61.902 66.667 5.01 0.00 31.73 4.45
103 104 3.902112 CACCAAGGCCACCACCCT 61.902 66.667 5.01 0.00 0.00 4.34
145 146 2.882677 ATGGTCACCAGACAGCGCA 61.883 57.895 11.47 0.00 46.80 6.09
154 155 3.565214 ACACGGCCATGGTCACCA 61.565 61.111 18.31 0.00 38.19 4.17
173 174 2.203070 CCTAGTCACCATGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
185 186 2.168521 CCATCGAATGACACACCCTAGT 59.831 50.000 0.00 0.00 0.00 2.57
186 187 2.168521 ACCATCGAATGACACACCCTAG 59.831 50.000 0.00 0.00 0.00 3.02
188 189 0.984230 ACCATCGAATGACACACCCT 59.016 50.000 0.00 0.00 0.00 4.34
190 191 1.086696 CCACCATCGAATGACACACC 58.913 55.000 0.00 0.00 0.00 4.16
198 199 1.745115 CGCACCACCACCATCGAAT 60.745 57.895 0.00 0.00 0.00 3.34
202 203 2.282180 AACCGCACCACCACCATC 60.282 61.111 0.00 0.00 0.00 3.51
218 219 1.134521 CACCAATAGAGCTACCGGCAA 60.135 52.381 0.00 0.00 44.79 4.52
221 222 1.754803 TGTCACCAATAGAGCTACCGG 59.245 52.381 0.00 0.00 0.00 5.28
223 224 3.447586 TCACTGTCACCAATAGAGCTACC 59.552 47.826 0.00 0.00 0.00 3.18
227 228 3.257393 CACTCACTGTCACCAATAGAGC 58.743 50.000 0.00 0.00 0.00 4.09
229 230 4.955811 AACACTCACTGTCACCAATAGA 57.044 40.909 0.00 0.00 30.29 1.98
231 232 3.563808 GCAAACACTCACTGTCACCAATA 59.436 43.478 0.00 0.00 30.29 1.90
232 233 2.358898 GCAAACACTCACTGTCACCAAT 59.641 45.455 0.00 0.00 30.29 3.16
235 236 0.663153 GGCAAACACTCACTGTCACC 59.337 55.000 0.00 0.00 30.29 4.02
236 237 0.304705 CGGCAAACACTCACTGTCAC 59.695 55.000 0.00 0.00 30.29 3.67
237 238 0.176910 TCGGCAAACACTCACTGTCA 59.823 50.000 0.00 0.00 30.29 3.58
238 239 0.861837 CTCGGCAAACACTCACTGTC 59.138 55.000 0.00 0.00 30.29 3.51
239 240 0.532862 CCTCGGCAAACACTCACTGT 60.533 55.000 0.00 0.00 32.89 3.55
240 241 0.532862 ACCTCGGCAAACACTCACTG 60.533 55.000 0.00 0.00 0.00 3.66
241 242 0.532862 CACCTCGGCAAACACTCACT 60.533 55.000 0.00 0.00 0.00 3.41
251 253 1.527380 GTGGGTTTTCACCTCGGCA 60.527 57.895 0.00 0.00 43.65 5.69
254 256 1.070134 TCAGAGTGGGTTTTCACCTCG 59.930 52.381 0.00 0.00 43.65 4.63
256 258 2.127708 AGTCAGAGTGGGTTTTCACCT 58.872 47.619 0.00 0.00 43.65 4.00
289 292 1.693083 GACACCATAACGCTGTCGCC 61.693 60.000 0.00 0.00 39.84 5.54
293 296 0.389426 GGACGACACCATAACGCTGT 60.389 55.000 0.00 0.00 0.00 4.40
295 298 1.217244 GGGACGACACCATAACGCT 59.783 57.895 0.00 0.00 0.00 5.07
298 301 1.553704 AGAAGGGGACGACACCATAAC 59.446 52.381 9.31 0.00 43.15 1.89
303 306 0.395312 TTCAAGAAGGGGACGACACC 59.605 55.000 0.00 0.00 40.50 4.16
336 339 1.333619 ACCACAACGAACAATGAGCAC 59.666 47.619 0.00 0.00 0.00 4.40
337 340 1.333308 CACCACAACGAACAATGAGCA 59.667 47.619 0.00 0.00 0.00 4.26
338 341 1.925946 GCACCACAACGAACAATGAGC 60.926 52.381 0.00 0.00 0.00 4.26
342 345 0.951558 GGAGCACCACAACGAACAAT 59.048 50.000 0.00 0.00 35.97 2.71
345 348 2.604174 CGGGAGCACCACAACGAAC 61.604 63.158 1.58 0.00 40.22 3.95
346 349 2.280524 CGGGAGCACCACAACGAA 60.281 61.111 1.58 0.00 40.22 3.85
362 365 1.004277 TCCAAGGATCAGGTTTTCCCG 59.996 52.381 0.00 0.00 41.86 5.14
366 369 3.766051 GCTCAATCCAAGGATCAGGTTTT 59.234 43.478 1.37 0.00 33.08 2.43
372 375 2.486013 CCATCGCTCAATCCAAGGATCA 60.486 50.000 1.37 0.00 33.08 2.92
373 376 2.149578 CCATCGCTCAATCCAAGGATC 58.850 52.381 1.37 0.00 33.08 3.36
376 379 1.779025 CGCCATCGCTCAATCCAAGG 61.779 60.000 0.00 0.00 0.00 3.61
378 381 1.819208 CCGCCATCGCTCAATCCAA 60.819 57.895 0.00 0.00 0.00 3.53
380 383 3.654020 GCCGCCATCGCTCAATCC 61.654 66.667 0.00 0.00 0.00 3.01
403 406 0.036388 TTCATGAAGGGAGCGACACC 60.036 55.000 3.38 0.00 0.00 4.16
430 433 0.251742 TGAAACCATGGGCTCCAAGG 60.252 55.000 18.09 12.32 46.63 3.61
443 446 2.751259 TGAAGCAGAGCATGATGAAACC 59.249 45.455 0.00 0.00 0.00 3.27
448 451 4.632538 TGAAATGAAGCAGAGCATGATG 57.367 40.909 0.00 0.00 0.00 3.07
449 452 5.592054 CAATGAAATGAAGCAGAGCATGAT 58.408 37.500 0.00 0.00 0.00 2.45
451 454 3.551890 GCAATGAAATGAAGCAGAGCATG 59.448 43.478 0.00 0.00 0.00 4.06
452 455 3.194755 TGCAATGAAATGAAGCAGAGCAT 59.805 39.130 0.00 0.00 0.00 3.79
453 456 2.559231 TGCAATGAAATGAAGCAGAGCA 59.441 40.909 0.00 0.00 0.00 4.26
454 457 3.226346 TGCAATGAAATGAAGCAGAGC 57.774 42.857 0.00 0.00 0.00 4.09
458 461 2.629137 ACCACTGCAATGAAATGAAGCA 59.371 40.909 0.00 0.00 27.95 3.91
464 467 2.821969 GGACAGACCACTGCAATGAAAT 59.178 45.455 0.00 0.00 46.95 2.17
465 468 2.229792 GGACAGACCACTGCAATGAAA 58.770 47.619 0.00 0.00 46.95 2.69
466 469 1.142667 TGGACAGACCACTGCAATGAA 59.857 47.619 0.00 0.00 46.95 2.57
467 470 0.764271 TGGACAGACCACTGCAATGA 59.236 50.000 0.00 0.00 46.95 2.57
479 482 0.548031 GGCCCTCATTCATGGACAGA 59.452 55.000 0.00 0.00 0.00 3.41
480 483 0.549950 AGGCCCTCATTCATGGACAG 59.450 55.000 0.00 0.00 0.00 3.51
482 485 0.548031 TGAGGCCCTCATTCATGGAC 59.452 55.000 10.05 0.00 35.39 4.02
487 490 0.036388 GTCGTTGAGGCCCTCATTCA 60.036 55.000 15.62 0.00 40.39 2.57
489 492 0.250513 GAGTCGTTGAGGCCCTCATT 59.749 55.000 15.62 0.00 40.39 2.57
490 493 1.617947 GGAGTCGTTGAGGCCCTCAT 61.618 60.000 15.62 0.00 40.39 2.90
499 502 4.471904 AGCATCAATAAGGAGTCGTTGA 57.528 40.909 8.32 5.10 35.33 3.18
501 504 5.003804 ACAAAGCATCAATAAGGAGTCGTT 58.996 37.500 3.23 3.23 0.00 3.85
508 511 5.540911 ACCAACAACAAAGCATCAATAAGG 58.459 37.500 0.00 0.00 0.00 2.69
510 513 6.259608 CCAAACCAACAACAAAGCATCAATAA 59.740 34.615 0.00 0.00 0.00 1.40
513 516 3.937706 CCAAACCAACAACAAAGCATCAA 59.062 39.130 0.00 0.00 0.00 2.57
515 518 3.791245 TCCAAACCAACAACAAAGCATC 58.209 40.909 0.00 0.00 0.00 3.91
516 519 3.197549 ACTCCAAACCAACAACAAAGCAT 59.802 39.130 0.00 0.00 0.00 3.79
522 525 2.818751 AGGACTCCAAACCAACAACA 57.181 45.000 0.00 0.00 0.00 3.33
529 543 0.187606 ACCCCAAAGGACTCCAAACC 59.812 55.000 0.00 0.00 39.89 3.27
531 545 1.289530 ACAACCCCAAAGGACTCCAAA 59.710 47.619 0.00 0.00 39.89 3.28
539 553 0.104671 CAGCAACACAACCCCAAAGG 59.895 55.000 0.00 0.00 43.78 3.11
540 554 0.823460 ACAGCAACACAACCCCAAAG 59.177 50.000 0.00 0.00 0.00 2.77
565 579 2.846206 TCAGGGCAGGATACAAAGATGT 59.154 45.455 0.00 0.00 43.74 3.06
567 581 3.118112 CACTCAGGGCAGGATACAAAGAT 60.118 47.826 0.00 0.00 41.41 2.40
570 584 1.985159 ACACTCAGGGCAGGATACAAA 59.015 47.619 0.00 0.00 41.41 2.83
583 597 2.601398 CCACAGCGCACACACTCAG 61.601 63.158 11.47 0.00 0.00 3.35
586 600 2.896854 CACCACAGCGCACACACT 60.897 61.111 11.47 0.00 0.00 3.55
596 610 1.063972 CAAACACACGCCACCACAG 59.936 57.895 0.00 0.00 0.00 3.66
597 611 0.392595 TACAAACACACGCCACCACA 60.393 50.000 0.00 0.00 0.00 4.17
598 612 0.948678 ATACAAACACACGCCACCAC 59.051 50.000 0.00 0.00 0.00 4.16
600 614 0.165079 CGATACAAACACACGCCACC 59.835 55.000 0.00 0.00 0.00 4.61
602 616 0.249953 ACCGATACAAACACACGCCA 60.250 50.000 0.00 0.00 0.00 5.69
603 617 0.165079 CACCGATACAAACACACGCC 59.835 55.000 0.00 0.00 0.00 5.68
605 619 0.179260 CGCACCGATACAAACACACG 60.179 55.000 0.00 0.00 0.00 4.49
606 620 0.863144 ACGCACCGATACAAACACAC 59.137 50.000 0.00 0.00 0.00 3.82
607 621 1.141645 GACGCACCGATACAAACACA 58.858 50.000 0.00 0.00 0.00 3.72
608 622 1.126113 CAGACGCACCGATACAAACAC 59.874 52.381 0.00 0.00 0.00 3.32
609 623 1.269883 ACAGACGCACCGATACAAACA 60.270 47.619 0.00 0.00 0.00 2.83
611 625 3.513680 ATACAGACGCACCGATACAAA 57.486 42.857 0.00 0.00 0.00 2.83
612 626 3.183754 CAATACAGACGCACCGATACAA 58.816 45.455 0.00 0.00 0.00 2.41
614 628 2.124903 CCAATACAGACGCACCGATAC 58.875 52.381 0.00 0.00 0.00 2.24
615 629 1.537348 GCCAATACAGACGCACCGATA 60.537 52.381 0.00 0.00 0.00 2.92
616 630 0.810031 GCCAATACAGACGCACCGAT 60.810 55.000 0.00 0.00 0.00 4.18
617 631 1.447140 GCCAATACAGACGCACCGA 60.447 57.895 0.00 0.00 0.00 4.69
618 632 1.019278 AAGCCAATACAGACGCACCG 61.019 55.000 0.00 0.00 0.00 4.94
619 633 0.447801 CAAGCCAATACAGACGCACC 59.552 55.000 0.00 0.00 0.00 5.01
686 704 9.612066 TGTTTTAAATTTTCTTCATGCTTTCCT 57.388 25.926 0.00 0.00 0.00 3.36
695 713 9.267084 GGCAGGTAATGTTTTAAATTTTCTTCA 57.733 29.630 0.00 0.00 0.00 3.02
696 714 9.267084 TGGCAGGTAATGTTTTAAATTTTCTTC 57.733 29.630 0.00 0.00 0.00 2.87
697 715 9.791801 ATGGCAGGTAATGTTTTAAATTTTCTT 57.208 25.926 0.00 0.00 0.00 2.52
698 716 9.435688 GATGGCAGGTAATGTTTTAAATTTTCT 57.564 29.630 0.00 0.00 0.00 2.52
699 717 9.435688 AGATGGCAGGTAATGTTTTAAATTTTC 57.564 29.630 0.00 0.00 0.00 2.29
706 724 9.914834 AGTAATTAGATGGCAGGTAATGTTTTA 57.085 29.630 5.22 0.00 0.00 1.52
707 725 8.823220 AGTAATTAGATGGCAGGTAATGTTTT 57.177 30.769 5.22 0.00 0.00 2.43
708 726 8.823220 AAGTAATTAGATGGCAGGTAATGTTT 57.177 30.769 5.22 0.08 0.00 2.83
710 728 9.726438 GATAAGTAATTAGATGGCAGGTAATGT 57.274 33.333 5.22 0.80 0.00 2.71
711 729 9.167311 GGATAAGTAATTAGATGGCAGGTAATG 57.833 37.037 5.22 0.00 0.00 1.90
712 730 8.329502 GGGATAAGTAATTAGATGGCAGGTAAT 58.670 37.037 0.00 0.00 0.00 1.89
713 731 7.256908 GGGGATAAGTAATTAGATGGCAGGTAA 60.257 40.741 0.00 0.00 0.00 2.85
714 732 6.214819 GGGGATAAGTAATTAGATGGCAGGTA 59.785 42.308 0.00 0.00 0.00 3.08
715 733 5.014228 GGGGATAAGTAATTAGATGGCAGGT 59.986 44.000 0.00 0.00 0.00 4.00
716 734 5.014123 TGGGGATAAGTAATTAGATGGCAGG 59.986 44.000 0.00 0.00 0.00 4.85
717 735 6.126863 TGGGGATAAGTAATTAGATGGCAG 57.873 41.667 0.00 0.00 0.00 4.85
718 736 6.102615 ACTTGGGGATAAGTAATTAGATGGCA 59.897 38.462 0.00 0.00 39.03 4.92
719 737 6.543735 ACTTGGGGATAAGTAATTAGATGGC 58.456 40.000 0.00 0.00 39.03 4.40
720 738 7.880195 CAGACTTGGGGATAAGTAATTAGATGG 59.120 40.741 0.00 0.00 40.78 3.51
721 739 7.880195 CCAGACTTGGGGATAAGTAATTAGATG 59.120 40.741 0.00 0.00 40.78 2.90
722 740 7.794683 TCCAGACTTGGGGATAAGTAATTAGAT 59.205 37.037 0.00 0.00 45.10 1.98
723 741 7.136885 TCCAGACTTGGGGATAAGTAATTAGA 58.863 38.462 0.00 0.00 45.10 2.10
724 742 7.374975 TCCAGACTTGGGGATAAGTAATTAG 57.625 40.000 0.00 0.00 45.10 1.73
725 743 7.017254 GGATCCAGACTTGGGGATAAGTAATTA 59.983 40.741 6.95 0.00 43.82 1.40
726 744 6.183361 GGATCCAGACTTGGGGATAAGTAATT 60.183 42.308 6.95 0.00 43.82 1.40
727 745 5.310857 GGATCCAGACTTGGGGATAAGTAAT 59.689 44.000 6.95 0.00 43.82 1.89
728 746 4.658901 GGATCCAGACTTGGGGATAAGTAA 59.341 45.833 6.95 0.00 43.82 2.24
729 747 4.232091 GGATCCAGACTTGGGGATAAGTA 58.768 47.826 6.95 0.00 43.82 2.24
730 748 3.049344 GGATCCAGACTTGGGGATAAGT 58.951 50.000 6.95 0.00 43.82 2.24
731 749 3.048600 TGGATCCAGACTTGGGGATAAG 58.951 50.000 11.44 0.00 43.82 1.73
732 750 3.144068 TGGATCCAGACTTGGGGATAA 57.856 47.619 11.44 0.00 43.82 1.75
733 751 2.887454 TGGATCCAGACTTGGGGATA 57.113 50.000 11.44 0.00 43.82 2.59
734 752 2.219216 ATGGATCCAGACTTGGGGAT 57.781 50.000 21.33 0.00 46.40 3.85
735 753 2.777692 GTTATGGATCCAGACTTGGGGA 59.222 50.000 21.33 0.00 45.10 4.81
736 754 2.509548 TGTTATGGATCCAGACTTGGGG 59.490 50.000 21.33 0.00 45.10 4.96
737 755 3.455910 TCTGTTATGGATCCAGACTTGGG 59.544 47.826 21.33 12.05 45.10 4.12
738 756 4.406972 TCTCTGTTATGGATCCAGACTTGG 59.593 45.833 21.33 14.05 46.49 3.61
739 757 5.604758 TCTCTGTTATGGATCCAGACTTG 57.395 43.478 21.33 16.14 32.16 3.16
740 758 5.960811 TCTTCTCTGTTATGGATCCAGACTT 59.039 40.000 21.33 5.64 32.16 3.01
741 759 5.523588 TCTTCTCTGTTATGGATCCAGACT 58.476 41.667 21.33 6.04 32.16 3.24
742 760 5.221422 CCTCTTCTCTGTTATGGATCCAGAC 60.221 48.000 21.33 20.12 32.16 3.51
743 761 4.898265 CCTCTTCTCTGTTATGGATCCAGA 59.102 45.833 21.33 13.69 34.28 3.86
744 762 4.040217 CCCTCTTCTCTGTTATGGATCCAG 59.960 50.000 21.33 6.07 0.00 3.86
745 763 3.969976 CCCTCTTCTCTGTTATGGATCCA 59.030 47.826 18.88 18.88 0.00 3.41
746 764 4.227197 TCCCTCTTCTCTGTTATGGATCC 58.773 47.826 4.20 4.20 0.00 3.36
747 765 4.283212 CCTCCCTCTTCTCTGTTATGGATC 59.717 50.000 0.00 0.00 0.00 3.36
748 766 4.078336 TCCTCCCTCTTCTCTGTTATGGAT 60.078 45.833 0.00 0.00 0.00 3.41
749 767 3.272285 TCCTCCCTCTTCTCTGTTATGGA 59.728 47.826 0.00 0.00 0.00 3.41
750 768 3.640967 CTCCTCCCTCTTCTCTGTTATGG 59.359 52.174 0.00 0.00 0.00 2.74
751 769 3.640967 CCTCCTCCCTCTTCTCTGTTATG 59.359 52.174 0.00 0.00 0.00 1.90
752 770 3.374762 CCCTCCTCCCTCTTCTCTGTTAT 60.375 52.174 0.00 0.00 0.00 1.89
753 771 2.023888 CCCTCCTCCCTCTTCTCTGTTA 60.024 54.545 0.00 0.00 0.00 2.41
805 823 3.540367 TTTTCACCCCCGCCTCGTC 62.540 63.158 0.00 0.00 0.00 4.20
807 825 2.281900 TTTTTCACCCCCGCCTCG 60.282 61.111 0.00 0.00 0.00 4.63
821 839 4.942761 ACATGCTGAATGAGGTGTTTTT 57.057 36.364 1.75 0.00 38.72 1.94
824 842 3.225104 ACAACATGCTGAATGAGGTGTT 58.775 40.909 1.75 0.00 38.72 3.32
833 851 3.213206 AGTCAAGGACAACATGCTGAA 57.787 42.857 2.44 0.00 34.60 3.02
860 878 5.541845 TCGGATGATGTCTTCAATGATACC 58.458 41.667 0.00 0.00 38.03 2.73
1058 1077 0.190815 ACCAATCAAAGGCAAGGGGT 59.809 50.000 0.00 0.00 0.00 4.95
1080 1101 2.070783 GTCGCGGATTGGTGAAGTTTA 58.929 47.619 6.13 0.00 0.00 2.01
1134 1155 4.100653 TGGACAAATGGCAAGTGAAAATCA 59.899 37.500 7.68 0.00 0.00 2.57
1146 1167 4.317488 ACATGAAAATGTGGACAAATGGC 58.683 39.130 0.00 0.00 32.79 4.40
1165 1186 6.385443 TCTATTCCCTCTTCCATCTGTACAT 58.615 40.000 0.00 0.00 0.00 2.29
1171 1192 5.398236 TCGATTCTATTCCCTCTTCCATCT 58.602 41.667 0.00 0.00 0.00 2.90
1172 1193 5.730296 TCGATTCTATTCCCTCTTCCATC 57.270 43.478 0.00 0.00 0.00 3.51
1190 1211 0.830648 TGCGGGAGAAGGATTTCGAT 59.169 50.000 0.00 0.00 38.38 3.59
1195 1216 0.181350 GGATGTGCGGGAGAAGGATT 59.819 55.000 0.00 0.00 0.00 3.01
1469 1490 6.352016 ATGGATCAGACATGGTACATACTC 57.648 41.667 0.00 0.00 39.48 2.59
1546 1567 9.699703 ACACAAAAATAAGCCAATTAATTACGT 57.300 25.926 0.00 0.00 0.00 3.57
1564 1585 7.043961 TGTAACCAAGCATATCACACAAAAA 57.956 32.000 0.00 0.00 0.00 1.94
1623 1644 1.552792 GCATAGTCTCAGGGGATAGGC 59.447 57.143 0.00 0.00 0.00 3.93
1629 1650 0.390860 CGGAAGCATAGTCTCAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
1649 1670 6.466308 TGTCACGTTGATCAAAGATAACAG 57.534 37.500 25.27 9.40 0.00 3.16
1653 1674 5.178061 AGCATGTCACGTTGATCAAAGATA 58.822 37.500 25.27 14.77 0.00 1.98
1697 1718 5.528320 TCACATCACATCGCATGTTTCATAT 59.472 36.000 0.00 0.00 42.70 1.78
1797 3925 4.706842 AATAGGAGGCCGAACATAACAT 57.293 40.909 0.00 0.00 0.00 2.71
1799 3927 3.995048 GCTAATAGGAGGCCGAACATAAC 59.005 47.826 0.00 0.00 0.00 1.89
1834 3962 3.054361 TCTCAAGATTACCAAGGAAGCCC 60.054 47.826 0.00 0.00 0.00 5.19
1836 3964 6.375455 TCAATTCTCAAGATTACCAAGGAAGC 59.625 38.462 0.00 0.00 0.00 3.86
1837 3965 7.928307 TCAATTCTCAAGATTACCAAGGAAG 57.072 36.000 0.00 0.00 0.00 3.46
1871 3999 5.864418 AGATAGGGCGTTCACTACATTTA 57.136 39.130 0.00 0.00 0.00 1.40
1882 4010 4.634443 GTGTTTCAACATAGATAGGGCGTT 59.366 41.667 0.00 0.00 41.59 4.84
1883 4011 4.081087 AGTGTTTCAACATAGATAGGGCGT 60.081 41.667 0.00 0.00 41.59 5.68
1884 4012 4.442706 AGTGTTTCAACATAGATAGGGCG 58.557 43.478 0.00 0.00 41.59 6.13
1886 4014 4.508124 GCGAGTGTTTCAACATAGATAGGG 59.492 45.833 0.00 0.00 41.59 3.53
1887 4015 4.508124 GGCGAGTGTTTCAACATAGATAGG 59.492 45.833 0.00 0.00 41.59 2.57
1888 4016 5.109210 TGGCGAGTGTTTCAACATAGATAG 58.891 41.667 0.00 0.00 41.59 2.08
1891 4019 3.394674 TGGCGAGTGTTTCAACATAGA 57.605 42.857 0.00 0.00 41.59 1.98
1905 4069 5.903764 TTGTTCATTTGATTTTTGGCGAG 57.096 34.783 0.00 0.00 0.00 5.03
1908 4072 7.586747 ACATGATTGTTCATTTGATTTTTGGC 58.413 30.769 0.00 0.00 40.70 4.52
1942 4106 3.004839 CCATCTGGTCAGGTATGTCTACG 59.995 52.174 0.00 0.00 0.00 3.51
2217 4381 4.074970 GCAATGAAGAAAGAGAGGTCCAA 58.925 43.478 0.00 0.00 0.00 3.53
2260 4424 3.351450 GGTGGGTTCCGAACTTGC 58.649 61.111 11.03 1.97 0.00 4.01
2438 4602 8.433421 AAAGAAAGTAACAAATCTTGACTCGA 57.567 30.769 0.00 0.00 32.72 4.04
2445 4609 8.478066 AGGCAGAAAAAGAAAGTAACAAATCTT 58.522 29.630 0.00 0.00 33.73 2.40
2777 4941 4.141181 AGCCATTTAGCCAGTTCATATCCA 60.141 41.667 0.00 0.00 0.00 3.41
2780 4944 4.586001 CCAAGCCATTTAGCCAGTTCATAT 59.414 41.667 0.00 0.00 0.00 1.78
2830 4994 6.992063 CATGAATGCCTACTACAAGAAAGT 57.008 37.500 0.00 0.00 0.00 2.66
3152 5316 6.699204 TGTACATAACTGCAAAACAACATTGG 59.301 34.615 0.00 0.00 0.00 3.16
3241 5406 5.263968 TCAAGATCCTACCTAAAGCTTCG 57.736 43.478 0.00 0.00 0.00 3.79
3389 5554 3.756963 CGGATGATGGCAGAATCATGAAT 59.243 43.478 6.79 0.00 45.27 2.57
3412 5577 6.238593 GGCTTTTGATTATCTCTGGCTTGTAG 60.239 42.308 0.00 0.00 0.00 2.74
3484 5649 1.544724 GCTCTGAGATATCCGAGCCT 58.455 55.000 19.55 0.00 42.20 4.58
3490 5655 5.757808 GTCTTCCAAAAGCTCTGAGATATCC 59.242 44.000 9.28 0.00 32.18 2.59
3652 5817 5.021458 AGGTTCGAAGAATAGTCCAGGTTA 58.979 41.667 0.00 0.00 45.90 2.85
3679 5844 4.901250 AGTTTTCCAATGGACACCTCAAAT 59.099 37.500 0.00 0.00 0.00 2.32
3971 6136 5.243507 CACTCAGATCTGTATGTGCCTCTAT 59.756 44.000 21.92 0.00 0.00 1.98
3985 6150 4.142049 GGAACTTCGGAATCACTCAGATCT 60.142 45.833 0.00 0.00 35.39 2.75
4092 6257 4.317488 GCCATTTGCTTTCCAATTCTTCA 58.683 39.130 0.00 0.00 36.87 3.02
4223 6388 4.755411 ACCAACCAGATTGTCGTGTATAG 58.245 43.478 0.00 0.00 36.47 1.31
4239 6404 1.962100 CGGAGGGAGTAGATACCAACC 59.038 57.143 0.00 0.00 31.98 3.77
4249 6414 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4250 6415 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4251 6416 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4252 6417 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4253 6418 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4254 6419 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4255 6420 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
4256 6421 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4257 6422 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4271 6436 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
4272 6437 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
4273 6438 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
4274 6439 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
4275 6440 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
4281 6446 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
4282 6447 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
4283 6448 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
4284 6449 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
4285 6450 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
4286 6451 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4287 6452 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4302 6467 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4303 6468 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4304 6469 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4305 6470 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4306 6471 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4315 6480 9.856162 AAAACAAATACTCCCTCTGTAAACTAA 57.144 29.630 0.00 0.00 0.00 2.24
4316 6481 9.280174 CAAAACAAATACTCCCTCTGTAAACTA 57.720 33.333 0.00 0.00 0.00 2.24
4317 6482 7.255486 GCAAAACAAATACTCCCTCTGTAAACT 60.255 37.037 0.00 0.00 0.00 2.66
4318 6483 6.861572 GCAAAACAAATACTCCCTCTGTAAAC 59.138 38.462 0.00 0.00 0.00 2.01
4319 6484 6.547880 TGCAAAACAAATACTCCCTCTGTAAA 59.452 34.615 0.00 0.00 0.00 2.01
4320 6485 6.065374 TGCAAAACAAATACTCCCTCTGTAA 58.935 36.000 0.00 0.00 0.00 2.41
4321 6486 5.626142 TGCAAAACAAATACTCCCTCTGTA 58.374 37.500 0.00 0.00 0.00 2.74
4322 6487 4.469657 TGCAAAACAAATACTCCCTCTGT 58.530 39.130 0.00 0.00 0.00 3.41
4323 6488 5.649782 ATGCAAAACAAATACTCCCTCTG 57.350 39.130 0.00 0.00 0.00 3.35
4324 6489 7.961326 ATAATGCAAAACAAATACTCCCTCT 57.039 32.000 0.00 0.00 0.00 3.69
4325 6490 8.872845 CAAATAATGCAAAACAAATACTCCCTC 58.127 33.333 0.00 0.00 0.00 4.30
4326 6491 8.592809 TCAAATAATGCAAAACAAATACTCCCT 58.407 29.630 0.00 0.00 0.00 4.20
4327 6492 8.770438 TCAAATAATGCAAAACAAATACTCCC 57.230 30.769 0.00 0.00 0.00 4.30
4345 6510 5.125257 TCATTTCAGCCGAGCATTCAAATAA 59.875 36.000 0.00 0.00 0.00 1.40
4542 6707 0.550914 TGGGTGAGAAAGCAAGGTGT 59.449 50.000 0.00 0.00 0.00 4.16
4610 6959 3.751246 CGACGTGCGGAAGGGGTA 61.751 66.667 0.00 0.00 36.03 3.69
4889 7238 4.631377 CCTTCAACTCATAAGCATCAACGA 59.369 41.667 0.00 0.00 0.00 3.85
4935 7284 5.492895 TCCAATAGATAGTTTGTCGCCAAA 58.507 37.500 0.00 0.00 38.22 3.28
4936 7285 5.092554 TCCAATAGATAGTTTGTCGCCAA 57.907 39.130 0.00 0.00 0.00 4.52
4941 7290 8.718102 TTAGTTGCTCCAATAGATAGTTTGTC 57.282 34.615 0.00 0.00 0.00 3.18
4957 7306 7.701445 ACAGAAATTCATATGCTTAGTTGCTC 58.299 34.615 0.00 0.00 0.00 4.26
5067 7416 6.043127 AGAGCACCACCAATATACATGTGATA 59.957 38.462 9.11 3.26 0.00 2.15
5119 7468 0.323725 ATGGGTGATGCCAAGGTGTC 60.324 55.000 0.00 0.00 39.65 3.67
5243 7592 7.599621 TGCATGTAAATGATCTTCCAAAGTTTG 59.400 33.333 8.73 8.73 0.00 2.93
5284 7921 5.398603 CTGAGAAAGCTCTAAAGTGGAGA 57.601 43.478 0.00 0.00 41.84 3.71
5339 7976 2.844122 AAGAAACACAAAGTGTCGCC 57.156 45.000 2.96 0.00 46.79 5.54
5341 7978 6.539324 TGTAGAAAAGAAACACAAAGTGTCG 58.461 36.000 2.96 0.00 46.79 4.35
5396 8033 2.941064 ACATGCATCTTGGAAGACATCG 59.059 45.455 0.00 0.00 37.98 3.84
5550 8187 3.986277 TCTCTCGTTGGTAACTGGAAAC 58.014 45.455 0.00 0.00 37.61 2.78
5565 8202 5.413213 CCACTATGGGTAGTCTAATCTCTCG 59.587 48.000 0.00 0.00 39.12 4.04
5771 8410 8.696043 TTATGTGGAATGATTTAATGAGGAGG 57.304 34.615 0.00 0.00 0.00 4.30
5939 8579 4.210537 GGTTTCACACATATTCGTATCCCG 59.789 45.833 0.00 0.00 38.13 5.14
6002 8642 8.545229 ACAAATCAAGTCAATGAAACAAACAA 57.455 26.923 0.00 0.00 32.06 2.83
6007 8647 8.819015 CATGAAACAAATCAAGTCAATGAAACA 58.181 29.630 0.00 0.00 32.06 2.83
6068 8708 1.198637 GTGCACCTTCTTCAGCATGTC 59.801 52.381 5.22 0.00 39.43 3.06
6118 8758 6.998074 TCTTTTCAAGATCCAGCAAGACTTTA 59.002 34.615 0.00 0.00 31.20 1.85
6139 8779 2.143925 GTTCTACCGTGCAGCTTCTTT 58.856 47.619 0.00 0.00 0.00 2.52
6264 8904 1.535226 CCGACGATATCTTTCGGTGCA 60.535 52.381 24.43 0.00 45.95 4.57
6305 8945 2.304761 TCGCCTTTTGTATCTCCAAGGT 59.695 45.455 0.00 0.00 38.49 3.50
6355 8995 2.158696 CCTTCTTCTCCATTGGGGCTAG 60.159 54.545 2.09 0.61 36.21 3.42
6382 9022 5.649782 AGTTTGCTATGAGAAAACCCATG 57.350 39.130 6.47 0.00 43.33 3.66
6430 9070 5.650266 TGTGTGGTACATGAGTCAAAAGTTT 59.350 36.000 0.00 0.00 44.52 2.66
6720 9382 4.348486 GGGCTATGTAGAGATCTCATCCA 58.652 47.826 24.39 16.57 0.00 3.41
6778 9477 2.288825 ACTGGTCATATAACATCCGCCG 60.289 50.000 0.00 0.00 0.00 6.46
6828 9527 2.158871 TCGAATGCCCACCTAACCATAC 60.159 50.000 0.00 0.00 0.00 2.39
6834 9533 1.339631 CCTGTTCGAATGCCCACCTAA 60.340 52.381 0.00 0.00 0.00 2.69
6843 9542 0.948623 TGTGTCCGCCTGTTCGAATG 60.949 55.000 0.00 0.00 0.00 2.67
6862 9561 3.192422 GTCATAGTGGCTATCAGCGAGAT 59.808 47.826 0.00 0.49 43.62 2.75
6925 9624 2.185004 TGGTGCTGTTCTTAGCTTCC 57.815 50.000 0.00 0.00 44.01 3.46
6936 9635 2.425312 TGTTTTCACGATTTGGTGCTGT 59.575 40.909 0.00 0.00 37.83 4.40
7002 9701 6.094048 TCCACAAATTTTCCAAAAATTTCGCA 59.906 30.769 16.29 0.42 37.64 5.10
7097 9796 6.252281 TGTTCGTGTTTCAATAAATATCCGC 58.748 36.000 0.00 0.00 0.00 5.54
7129 9828 8.039603 TGTTTGCTACTGTACCTCATATTTTG 57.960 34.615 0.00 0.00 0.00 2.44
7192 9891 4.141855 ACGTTCATGTGTTCGGAAAATC 57.858 40.909 0.00 0.00 0.00 2.17
7237 9938 9.603921 AAGTTTACTACAGTACTTGCTGTTTTA 57.396 29.630 5.24 0.00 46.45 1.52
7444 10146 4.272018 TCATGTTTCCAAAATTTTGTGCGG 59.728 37.500 25.25 13.09 36.45 5.69
7447 10149 7.148272 ACCTGTTCATGTTTCCAAAATTTTGTG 60.148 33.333 25.25 17.04 36.45 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.