Multiple sequence alignment - TraesCS7D01G520700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G520700 chr7D 100.000 5731 0 0 1 5731 618220216 618225946 0.000000e+00 10584
1 TraesCS7D01G520700 chr7D 84.534 569 61 13 75 619 618214050 618214615 6.530000e-149 538
2 TraesCS7D01G520700 chr7D 99.000 100 1 0 2042 2141 618222162 618222261 4.560000e-41 180
3 TraesCS7D01G520700 chr7D 99.000 100 1 0 1947 2046 618222257 618222356 4.560000e-41 180
4 TraesCS7D01G520700 chr7D 93.671 79 5 0 1 79 618195225 618195303 1.010000e-22 119
5 TraesCS7D01G520700 chr7A 91.311 2532 145 30 2287 4766 711945180 711947688 0.000000e+00 3387
6 TraesCS7D01G520700 chr7A 95.064 628 20 5 966 1583 711944013 711944639 0.000000e+00 977
7 TraesCS7D01G520700 chr7A 89.904 624 40 7 1 619 711943188 711943793 0.000000e+00 782
8 TraesCS7D01G520700 chr7A 88.576 569 51 10 5169 5731 711948173 711948733 0.000000e+00 678
9 TraesCS7D01G520700 chr7A 84.783 644 72 11 1 619 711927911 711928553 1.750000e-174 623
10 TraesCS7D01G520700 chr7A 88.732 213 16 3 2041 2248 711944883 711945092 2.650000e-63 254
11 TraesCS7D01G520700 chr7A 89.744 117 6 2 650 760 711943791 711943907 1.660000e-30 145
12 TraesCS7D01G520700 chr7B 90.311 1930 131 22 3256 5161 712617434 712619331 0.000000e+00 2477
13 TraesCS7D01G520700 chr7B 92.727 1210 59 12 2042 3227 712616229 712617433 0.000000e+00 1720
14 TraesCS7D01G520700 chr7B 88.060 1139 74 21 957 2046 712615203 712616328 0.000000e+00 1293
15 TraesCS7D01G520700 chr7B 86.102 626 55 5 1 621 712535739 712536337 0.000000e+00 645
16 TraesCS7D01G520700 chr7B 85.965 627 55 6 1 621 712565333 712565932 1.740000e-179 640
17 TraesCS7D01G520700 chr7B 92.203 295 20 3 1 292 712574484 712574778 1.150000e-111 414
18 TraesCS7D01G520700 chr7B 91.864 295 21 3 1 292 712544288 712544582 5.350000e-110 409
19 TraesCS7D01G520700 chr7B 94.000 200 7 3 5250 5449 712621886 712622080 1.210000e-76 298
20 TraesCS7D01G520700 chr7B 92.208 154 11 1 342 494 712574784 712574937 3.480000e-52 217
21 TraesCS7D01G520700 chr7B 91.558 154 12 1 342 494 712544588 712544741 1.620000e-50 211
22 TraesCS7D01G520700 chr7B 87.129 101 8 3 966 1063 712536710 712536808 6.070000e-20 110
23 TraesCS7D01G520700 chr7B 87.129 101 8 3 966 1063 712566305 712566403 6.070000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G520700 chr7D 618220216 618225946 5730 False 3648.000000 10584 99.333333 1 5731 3 chr7D.!!$F3 5730
1 TraesCS7D01G520700 chr7D 618214050 618214615 565 False 538.000000 538 84.534000 75 619 1 chr7D.!!$F2 544
2 TraesCS7D01G520700 chr7A 711943188 711948733 5545 False 1037.166667 3387 90.555167 1 5731 6 chr7A.!!$F2 5730
3 TraesCS7D01G520700 chr7A 711927911 711928553 642 False 623.000000 623 84.783000 1 619 1 chr7A.!!$F1 618
4 TraesCS7D01G520700 chr7B 712615203 712622080 6877 False 1447.000000 2477 91.274500 957 5449 4 chr7B.!!$F5 4492
5 TraesCS7D01G520700 chr7B 712535739 712536808 1069 False 377.500000 645 86.615500 1 1063 2 chr7B.!!$F1 1062
6 TraesCS7D01G520700 chr7B 712565333 712566403 1070 False 375.000000 640 86.547000 1 1063 2 chr7B.!!$F3 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 1086 0.460987 GGCCCACGAGACAGAATGAG 60.461 60.000 0.00 0.00 39.69 2.90 F
1672 1896 0.030638 AGTTTGCACATGAACACGCC 59.969 50.000 0.00 0.00 0.00 5.68 F
2109 2414 0.179119 CTAGCTTTGCAGGCAATGGC 60.179 55.000 17.95 18.10 35.70 4.40 F
2110 2415 0.612732 TAGCTTTGCAGGCAATGGCT 60.613 50.000 25.97 25.97 42.82 4.75 F
2120 2425 1.284198 AGGCAATGGCTGATCTCTTGT 59.716 47.619 9.02 0.00 40.87 3.16 F
3064 3463 1.615392 GGCAACAGTTTCTGGCTGATT 59.385 47.619 0.00 0.00 37.40 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 2395 0.179119 GCCATTGCCTGCAAAGCTAG 60.179 55.000 17.84 4.93 39.55 3.42 R
2560 2929 2.403252 GCTTGTAGGTGCCATAGTGT 57.597 50.000 0.00 0.00 0.00 3.55 R
3005 3404 2.905415 TCCTCACAATTGGCTGGAAT 57.095 45.000 10.83 0.00 0.00 3.01 R
3300 3701 3.133691 TGCACTCTGTCACTTTGTGATC 58.866 45.455 3.65 0.00 44.63 2.92 R
3951 4355 4.389374 GTTGACTTTCAGGGATTCTGTCA 58.611 43.478 0.00 0.00 43.76 3.58 R
4785 5203 2.097680 TGACGTGCACATGATGTCAT 57.902 45.000 18.64 0.00 34.85 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 0.756294 TCCATACAGCCGGTACCATG 59.244 55.000 13.54 9.83 34.07 3.66
127 135 5.428184 GATTATATCCAAGCTAGCAGGGT 57.572 43.478 18.83 16.79 0.00 4.34
139 149 4.717280 AGCTAGCAGGGTAACTAGTTCATT 59.283 41.667 18.83 0.00 38.50 2.57
210 228 8.190888 ACTAATTGCTTTCTAAGATGAGTTCG 57.809 34.615 0.00 0.00 0.00 3.95
277 313 1.229428 CCTCAAGAAGCAAGTCGCAA 58.771 50.000 0.00 0.00 46.13 4.85
286 329 0.674895 GCAAGTCGCAAGGATCAGGT 60.675 55.000 0.00 0.00 41.79 4.00
327 370 1.034838 TTCAAGCCACAACACGCCTT 61.035 50.000 0.00 0.00 0.00 4.35
387 430 1.749634 GGTCGAGCTAGCTCCAGTTTA 59.250 52.381 33.57 13.27 39.77 2.01
396 439 2.728007 AGCTCCAGTTTAATCCTTGCC 58.272 47.619 0.00 0.00 0.00 4.52
432 475 1.303236 TTGCTGCCGCCTACATTGT 60.303 52.632 0.00 0.00 34.43 2.71
551 595 1.018752 TGTCACCCGCACGATGAATG 61.019 55.000 0.00 0.00 0.00 2.67
584 628 4.932911 AAAATTCAATGAAATGCCCCCT 57.067 36.364 0.00 0.00 0.00 4.79
585 629 6.671779 AGTAAAATTCAATGAAATGCCCCCTA 59.328 34.615 0.00 0.00 0.00 3.53
586 630 5.357742 AAATTCAATGAAATGCCCCCTAC 57.642 39.130 0.00 0.00 0.00 3.18
593 640 2.578480 TGAAATGCCCCCTACATGTACA 59.422 45.455 0.08 0.00 0.00 2.90
621 669 8.436778 ACAAGCATAAATCCATACCATGTACTA 58.563 33.333 0.00 0.00 0.00 1.82
624 793 9.284968 AGCATAAATCCATACCATGTACTAAAC 57.715 33.333 0.00 0.00 0.00 2.01
626 795 9.268268 CATAAATCCATACCATGTACTAAACGT 57.732 33.333 0.00 0.00 0.00 3.99
677 846 7.822161 TTGAAAAGAAATGATGGTCTTCTCA 57.178 32.000 0.00 0.00 30.76 3.27
765 940 8.840200 TCCAATGTATATATCTTACTCCCTCC 57.160 38.462 0.00 0.00 0.00 4.30
766 941 7.560262 TCCAATGTATATATCTTACTCCCTCCG 59.440 40.741 0.00 0.00 0.00 4.63
779 954 9.205513 TCTTACTCCCTCCGTATTAAAATAAGT 57.794 33.333 0.00 0.00 0.00 2.24
780 955 9.257651 CTTACTCCCTCCGTATTAAAATAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
781 956 7.191593 ACTCCCTCCGTATTAAAATAAGTGT 57.808 36.000 0.00 0.00 0.00 3.55
782 957 7.046033 ACTCCCTCCGTATTAAAATAAGTGTG 58.954 38.462 0.00 0.00 0.00 3.82
783 958 6.949715 TCCCTCCGTATTAAAATAAGTGTGT 58.050 36.000 0.00 0.00 0.00 3.72
784 959 7.043565 TCCCTCCGTATTAAAATAAGTGTGTC 58.956 38.462 0.00 0.00 0.00 3.67
785 960 6.819649 CCCTCCGTATTAAAATAAGTGTGTCA 59.180 38.462 0.00 0.00 0.00 3.58
786 961 7.497909 CCCTCCGTATTAAAATAAGTGTGTCAT 59.502 37.037 0.00 0.00 0.00 3.06
787 962 8.548721 CCTCCGTATTAAAATAAGTGTGTCATC 58.451 37.037 0.00 0.00 0.00 2.92
788 963 9.314321 CTCCGTATTAAAATAAGTGTGTCATCT 57.686 33.333 0.00 0.00 0.00 2.90
789 964 9.661563 TCCGTATTAAAATAAGTGTGTCATCTT 57.338 29.630 0.00 0.00 0.00 2.40
798 973 9.950680 AAATAAGTGTGTCATCTTTGTACAAAG 57.049 29.630 33.28 33.28 46.82 2.77
799 974 8.677148 ATAAGTGTGTCATCTTTGTACAAAGT 57.323 30.769 35.55 24.64 45.88 2.66
800 975 7.391148 AAGTGTGTCATCTTTGTACAAAGTT 57.609 32.000 35.55 28.57 45.88 2.66
801 976 6.785191 AGTGTGTCATCTTTGTACAAAGTTG 58.215 36.000 34.04 34.04 45.88 3.16
802 977 6.374333 AGTGTGTCATCTTTGTACAAAGTTGT 59.626 34.615 35.81 25.63 45.88 3.32
803 978 7.551262 AGTGTGTCATCTTTGTACAAAGTTGTA 59.449 33.333 35.81 28.43 45.88 2.41
832 1007 7.653767 ACTTAAGTGACTCATTTTAAGACGG 57.346 36.000 21.29 6.97 36.87 4.79
833 1008 7.439381 ACTTAAGTGACTCATTTTAAGACGGA 58.561 34.615 21.29 0.00 36.87 4.69
834 1009 7.384387 ACTTAAGTGACTCATTTTAAGACGGAC 59.616 37.037 21.29 0.00 36.87 4.79
835 1010 4.235360 AGTGACTCATTTTAAGACGGACG 58.765 43.478 0.00 0.00 0.00 4.79
836 1011 4.022589 AGTGACTCATTTTAAGACGGACGA 60.023 41.667 0.00 0.00 0.00 4.20
837 1012 4.323868 GTGACTCATTTTAAGACGGACGAG 59.676 45.833 0.00 0.00 0.00 4.18
838 1013 4.022589 TGACTCATTTTAAGACGGACGAGT 60.023 41.667 0.00 0.00 35.29 4.18
839 1014 5.181811 TGACTCATTTTAAGACGGACGAGTA 59.818 40.000 0.00 0.00 32.86 2.59
840 1015 6.127814 TGACTCATTTTAAGACGGACGAGTAT 60.128 38.462 0.00 0.00 32.86 2.12
841 1016 7.066163 TGACTCATTTTAAGACGGACGAGTATA 59.934 37.037 0.00 0.00 32.86 1.47
842 1017 7.938715 ACTCATTTTAAGACGGACGAGTATAT 58.061 34.615 0.00 0.00 31.01 0.86
843 1018 8.411683 ACTCATTTTAAGACGGACGAGTATATT 58.588 33.333 0.00 0.00 31.01 1.28
865 1040 1.172180 TTTTCTCCTGCGTGGGCTTG 61.172 55.000 0.00 0.00 40.82 4.01
874 1049 1.738099 CGTGGGCTTGAGTTCCTCG 60.738 63.158 0.00 0.00 32.35 4.63
875 1050 1.671742 GTGGGCTTGAGTTCCTCGA 59.328 57.895 0.00 0.00 32.35 4.04
899 1074 1.426041 CGATTTCTTACCGGCCCACG 61.426 60.000 0.00 0.00 43.80 4.94
909 1084 4.208632 GGCCCACGAGACAGAATG 57.791 61.111 0.00 0.00 46.00 2.67
910 1085 1.596934 GGCCCACGAGACAGAATGA 59.403 57.895 0.00 0.00 39.69 2.57
911 1086 0.460987 GGCCCACGAGACAGAATGAG 60.461 60.000 0.00 0.00 39.69 2.90
912 1087 0.460987 GCCCACGAGACAGAATGAGG 60.461 60.000 0.00 0.00 39.69 3.86
913 1088 1.186200 CCCACGAGACAGAATGAGGA 58.814 55.000 0.00 0.00 39.69 3.71
914 1089 1.135915 CCCACGAGACAGAATGAGGAG 59.864 57.143 0.00 0.00 39.69 3.69
915 1090 1.135915 CCACGAGACAGAATGAGGAGG 59.864 57.143 0.00 0.00 39.69 4.30
916 1091 0.820871 ACGAGACAGAATGAGGAGGC 59.179 55.000 0.00 0.00 39.69 4.70
917 1092 0.820226 CGAGACAGAATGAGGAGGCA 59.180 55.000 0.00 0.00 39.69 4.75
918 1093 1.205655 CGAGACAGAATGAGGAGGCAA 59.794 52.381 0.00 0.00 39.69 4.52
919 1094 2.626840 GAGACAGAATGAGGAGGCAAC 58.373 52.381 0.00 0.00 39.69 4.17
921 1096 2.027377 AGACAGAATGAGGAGGCAACTG 60.027 50.000 0.00 0.00 46.37 3.16
982 1190 7.454225 TCAAAAAGAAAAGAAAAACCCTCCAA 58.546 30.769 0.00 0.00 0.00 3.53
1004 1212 3.349488 AAAGAAAGAAAAAGTCGCGGG 57.651 42.857 6.13 0.00 0.00 6.13
1096 1307 2.203126 CTTCTCATCTGCCCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
1097 1308 3.764160 CTTCTCATCTGCCCGCCCC 62.764 68.421 0.00 0.00 0.00 5.80
1098 1309 4.804420 TCTCATCTGCCCGCCCCT 62.804 66.667 0.00 0.00 0.00 4.79
1200 1421 1.427072 CCAAACCCCTCCTCCACAGT 61.427 60.000 0.00 0.00 0.00 3.55
1216 1440 3.399181 GTCCCATCTCGGCCACCA 61.399 66.667 2.24 0.00 0.00 4.17
1521 1745 4.891727 CCGCGGTTCATCCCCTCG 62.892 72.222 19.50 0.00 0.00 4.63
1591 1815 3.068691 TCCGTCCTTCCCTCGCAG 61.069 66.667 0.00 0.00 0.00 5.18
1594 1818 2.185608 GTCCTTCCCTCGCAGCTC 59.814 66.667 0.00 0.00 0.00 4.09
1595 1819 2.038007 TCCTTCCCTCGCAGCTCT 59.962 61.111 0.00 0.00 0.00 4.09
1600 1824 2.003301 CTTCCCTCGCAGCTCTTTTAC 58.997 52.381 0.00 0.00 0.00 2.01
1601 1825 1.267121 TCCCTCGCAGCTCTTTTACT 58.733 50.000 0.00 0.00 0.00 2.24
1602 1826 1.623811 TCCCTCGCAGCTCTTTTACTT 59.376 47.619 0.00 0.00 0.00 2.24
1603 1827 2.829720 TCCCTCGCAGCTCTTTTACTTA 59.170 45.455 0.00 0.00 0.00 2.24
1605 1829 3.804873 CCCTCGCAGCTCTTTTACTTATC 59.195 47.826 0.00 0.00 0.00 1.75
1606 1830 4.433615 CCTCGCAGCTCTTTTACTTATCA 58.566 43.478 0.00 0.00 0.00 2.15
1670 1894 3.242706 TGAAGAGTTTGCACATGAACACG 60.243 43.478 0.00 0.00 0.00 4.49
1671 1895 1.002468 AGAGTTTGCACATGAACACGC 60.002 47.619 0.00 0.00 0.00 5.34
1672 1896 0.030638 AGTTTGCACATGAACACGCC 59.969 50.000 0.00 0.00 0.00 5.68
1673 1897 0.939106 GTTTGCACATGAACACGCCC 60.939 55.000 0.00 0.00 0.00 6.13
1674 1898 1.106351 TTTGCACATGAACACGCCCT 61.106 50.000 0.00 0.00 0.00 5.19
1675 1899 0.250510 TTGCACATGAACACGCCCTA 60.251 50.000 0.00 0.00 0.00 3.53
1678 1902 1.808411 CACATGAACACGCCCTAGTT 58.192 50.000 0.00 0.00 0.00 2.24
1679 1903 2.151202 CACATGAACACGCCCTAGTTT 58.849 47.619 0.00 0.00 0.00 2.66
1680 1904 3.331150 CACATGAACACGCCCTAGTTTA 58.669 45.455 0.00 0.00 0.00 2.01
1681 1905 3.938963 CACATGAACACGCCCTAGTTTAT 59.061 43.478 0.00 0.00 0.00 1.40
1683 1907 5.007682 ACATGAACACGCCCTAGTTTATTT 58.992 37.500 0.00 0.00 0.00 1.40
1684 1908 5.123344 ACATGAACACGCCCTAGTTTATTTC 59.877 40.000 0.00 0.00 0.00 2.17
1685 1909 4.643463 TGAACACGCCCTAGTTTATTTCA 58.357 39.130 0.00 0.00 0.00 2.69
1686 1910 5.250200 TGAACACGCCCTAGTTTATTTCAT 58.750 37.500 0.00 0.00 0.00 2.57
1687 1911 5.708230 TGAACACGCCCTAGTTTATTTCATT 59.292 36.000 0.00 0.00 0.00 2.57
1688 1912 5.813080 ACACGCCCTAGTTTATTTCATTC 57.187 39.130 0.00 0.00 0.00 2.67
1689 1913 5.497474 ACACGCCCTAGTTTATTTCATTCT 58.503 37.500 0.00 0.00 0.00 2.40
1690 1914 5.354234 ACACGCCCTAGTTTATTTCATTCTG 59.646 40.000 0.00 0.00 0.00 3.02
1691 1915 4.335594 ACGCCCTAGTTTATTTCATTCTGC 59.664 41.667 0.00 0.00 0.00 4.26
1693 1917 5.582550 GCCCTAGTTTATTTCATTCTGCAC 58.417 41.667 0.00 0.00 0.00 4.57
1695 1919 6.678900 GCCCTAGTTTATTTCATTCTGCACTG 60.679 42.308 0.00 0.00 0.00 3.66
1696 1920 6.375455 CCCTAGTTTATTTCATTCTGCACTGT 59.625 38.462 0.00 0.00 0.00 3.55
1697 1921 7.414540 CCCTAGTTTATTTCATTCTGCACTGTC 60.415 40.741 0.00 0.00 0.00 3.51
1698 1922 6.882610 AGTTTATTTCATTCTGCACTGTCA 57.117 33.333 0.00 0.00 0.00 3.58
1699 1923 6.672147 AGTTTATTTCATTCTGCACTGTCAC 58.328 36.000 0.00 0.00 0.00 3.67
1700 1924 6.262944 AGTTTATTTCATTCTGCACTGTCACA 59.737 34.615 0.00 0.00 0.00 3.58
1701 1925 6.822667 TTATTTCATTCTGCACTGTCACAT 57.177 33.333 0.00 0.00 0.00 3.21
1702 1926 5.717078 ATTTCATTCTGCACTGTCACATT 57.283 34.783 0.00 0.00 0.00 2.71
1703 1927 4.754372 TTCATTCTGCACTGTCACATTC 57.246 40.909 0.00 0.00 0.00 2.67
1704 1928 3.742385 TCATTCTGCACTGTCACATTCA 58.258 40.909 0.00 0.00 0.00 2.57
1705 1929 4.329392 TCATTCTGCACTGTCACATTCAT 58.671 39.130 0.00 0.00 0.00 2.57
1706 1930 4.155280 TCATTCTGCACTGTCACATTCATG 59.845 41.667 0.00 0.00 0.00 3.07
1721 1952 3.490439 TTCATGTTTCAGACTGCAGGA 57.510 42.857 19.93 2.44 0.00 3.86
1725 1956 3.777106 TGTTTCAGACTGCAGGAAGAT 57.223 42.857 19.93 0.00 0.00 2.40
1736 1967 4.400567 ACTGCAGGAAGATAAATGCTTTCC 59.599 41.667 19.93 0.00 39.42 3.13
1750 1981 1.897560 CTTTCCCAAGCCGAGTCTTT 58.102 50.000 0.00 0.00 0.00 2.52
1767 1998 6.127253 CGAGTCTTTAGTATTACCCCTTGGAA 60.127 42.308 0.00 0.00 34.81 3.53
1768 1999 7.418712 CGAGTCTTTAGTATTACCCCTTGGAAT 60.419 40.741 0.00 0.00 34.81 3.01
1772 2003 8.711170 TCTTTAGTATTACCCCTTGGAATAGTG 58.289 37.037 0.00 0.00 34.81 2.74
1780 2011 3.309121 CCCCTTGGAATAGTGAACACCAT 60.309 47.826 1.11 0.00 0.00 3.55
1789 2024 7.985184 TGGAATAGTGAACACCATCAAGTATAC 59.015 37.037 0.00 0.00 0.00 1.47
1834 2069 5.355350 CCAAACTTTATAGGGCTCACTTGAG 59.645 44.000 1.56 1.56 44.75 3.02
1861 2098 8.984891 TCCAGCTTATGTTAAACATCAAAATG 57.015 30.769 0.00 0.00 39.88 2.32
2038 2343 6.478344 GCTGATCTCTTGTAGTGTTGGATAAG 59.522 42.308 0.00 0.00 0.00 1.73
2039 2344 7.631594 GCTGATCTCTTGTAGTGTTGGATAAGA 60.632 40.741 0.00 0.00 0.00 2.10
2040 2345 8.311395 TGATCTCTTGTAGTGTTGGATAAGAT 57.689 34.615 0.00 0.00 0.00 2.40
2041 2346 8.417106 TGATCTCTTGTAGTGTTGGATAAGATC 58.583 37.037 0.00 0.00 37.17 2.75
2042 2347 7.718334 TCTCTTGTAGTGTTGGATAAGATCA 57.282 36.000 0.00 0.00 0.00 2.92
2043 2348 8.311395 TCTCTTGTAGTGTTGGATAAGATCAT 57.689 34.615 0.00 0.00 0.00 2.45
2044 2349 9.421399 TCTCTTGTAGTGTTGGATAAGATCATA 57.579 33.333 0.00 0.00 0.00 2.15
2104 2409 2.332063 GGATACTAGCTTTGCAGGCA 57.668 50.000 14.52 0.00 0.00 4.75
2105 2410 2.643551 GGATACTAGCTTTGCAGGCAA 58.356 47.619 14.52 1.93 0.00 4.52
2106 2411 3.217626 GGATACTAGCTTTGCAGGCAAT 58.782 45.455 7.62 0.00 35.70 3.56
2107 2412 3.004106 GGATACTAGCTTTGCAGGCAATG 59.996 47.826 7.62 11.13 35.70 2.82
2108 2413 1.180029 ACTAGCTTTGCAGGCAATGG 58.820 50.000 17.95 11.02 35.70 3.16
2109 2414 0.179119 CTAGCTTTGCAGGCAATGGC 60.179 55.000 17.95 18.10 35.70 4.40
2110 2415 0.612732 TAGCTTTGCAGGCAATGGCT 60.613 50.000 25.97 25.97 42.82 4.75
2119 2424 2.054232 AGGCAATGGCTGATCTCTTG 57.946 50.000 9.02 0.00 40.87 3.02
2120 2425 1.284198 AGGCAATGGCTGATCTCTTGT 59.716 47.619 9.02 0.00 40.87 3.16
2121 2426 2.507058 AGGCAATGGCTGATCTCTTGTA 59.493 45.455 9.02 0.00 40.87 2.41
2122 2427 2.877168 GGCAATGGCTGATCTCTTGTAG 59.123 50.000 0.00 0.00 40.87 2.74
2123 2428 3.539604 GCAATGGCTGATCTCTTGTAGT 58.460 45.455 0.00 0.00 36.96 2.73
2124 2429 3.311871 GCAATGGCTGATCTCTTGTAGTG 59.688 47.826 0.00 0.00 36.96 2.74
2125 2430 4.511527 CAATGGCTGATCTCTTGTAGTGT 58.488 43.478 0.00 0.00 0.00 3.55
2126 2431 4.833478 ATGGCTGATCTCTTGTAGTGTT 57.167 40.909 0.00 0.00 0.00 3.32
2127 2432 3.930336 TGGCTGATCTCTTGTAGTGTTG 58.070 45.455 0.00 0.00 0.00 3.33
2128 2433 3.265791 GGCTGATCTCTTGTAGTGTTGG 58.734 50.000 0.00 0.00 0.00 3.77
2129 2434 3.055819 GGCTGATCTCTTGTAGTGTTGGA 60.056 47.826 0.00 0.00 0.00 3.53
2130 2435 4.383552 GGCTGATCTCTTGTAGTGTTGGAT 60.384 45.833 0.00 0.00 0.00 3.41
2131 2436 5.163405 GGCTGATCTCTTGTAGTGTTGGATA 60.163 44.000 0.00 0.00 0.00 2.59
2132 2437 6.341316 GCTGATCTCTTGTAGTGTTGGATAA 58.659 40.000 0.00 0.00 0.00 1.75
2259 2569 8.199449 CAGGTCTAAAAATATCATTTGTGGCAT 58.801 33.333 0.00 0.00 0.00 4.40
2266 2576 6.778834 AATATCATTTGTGGCATGACTGAA 57.221 33.333 0.00 0.00 33.42 3.02
2339 2699 4.272489 TGGGATCTAATTCACTTTGCAGG 58.728 43.478 0.00 0.00 0.00 4.85
2363 2724 6.451393 GCTTTGACCATATTGTGTTTGGTTA 58.549 36.000 0.00 0.00 43.67 2.85
2364 2725 6.926272 GCTTTGACCATATTGTGTTTGGTTAA 59.074 34.615 0.00 0.00 43.67 2.01
2716 3097 6.767902 TCAGGAAGCCTTGTGTAAATGATATC 59.232 38.462 0.00 0.00 0.00 1.63
2734 3115 8.862325 ATGATATCGTAATATTCAAAAGCCCA 57.138 30.769 0.00 0.00 0.00 5.36
2758 3139 5.704053 ACCAGTGCTACAGGTAATTACAAAC 59.296 40.000 17.16 0.38 36.13 2.93
2762 3143 5.868801 GTGCTACAGGTAATTACAAACCGTA 59.131 40.000 17.16 9.03 40.88 4.02
2904 3285 7.281100 GGAGATATTGTTGAGGTTAGTTTCAGG 59.719 40.741 0.00 0.00 0.00 3.86
2907 3288 9.832445 GATATTGTTGAGGTTAGTTTCAGGATA 57.168 33.333 0.00 0.00 0.00 2.59
2909 3290 8.934023 ATTGTTGAGGTTAGTTTCAGGATAAA 57.066 30.769 0.00 0.00 0.00 1.40
2958 3339 4.550422 TCTCTTCACTGATGTCGTTCTTG 58.450 43.478 0.00 0.00 0.00 3.02
2962 3343 5.584649 TCTTCACTGATGTCGTTCTTGTTTT 59.415 36.000 0.00 0.00 0.00 2.43
2963 3344 5.403897 TCACTGATGTCGTTCTTGTTTTC 57.596 39.130 0.00 0.00 0.00 2.29
2964 3345 4.873259 TCACTGATGTCGTTCTTGTTTTCA 59.127 37.500 0.00 0.00 0.00 2.69
2976 3374 7.042321 TCGTTCTTGTTTTCACCAGTTAGTATG 60.042 37.037 0.00 0.00 0.00 2.39
2980 3379 8.617809 TCTTGTTTTCACCAGTTAGTATGTTTC 58.382 33.333 0.00 0.00 0.00 2.78
2990 3389 9.317827 ACCAGTTAGTATGTTTCTCCTTAAGTA 57.682 33.333 0.97 0.00 0.00 2.24
2993 3392 9.819267 AGTTAGTATGTTTCTCCTTAAGTATGC 57.181 33.333 0.97 0.00 0.00 3.14
3005 3404 7.290014 TCTCCTTAAGTATGCATGAGGTAATGA 59.710 37.037 10.16 4.69 0.00 2.57
3016 3415 4.524802 TGAGGTAATGATTCCAGCCAAT 57.475 40.909 0.00 0.00 0.00 3.16
3064 3463 1.615392 GGCAACAGTTTCTGGCTGATT 59.385 47.619 0.00 0.00 37.40 2.57
3065 3464 2.608752 GGCAACAGTTTCTGGCTGATTG 60.609 50.000 0.00 0.00 37.40 2.67
3068 3467 4.685924 CAACAGTTTCTGGCTGATTGTTT 58.314 39.130 13.04 2.45 37.40 2.83
3096 3495 4.377431 CGCCAGTTGCTTTTAGTGTTCTAG 60.377 45.833 0.00 0.00 38.05 2.43
3117 3516 7.683578 TCTAGTGAAGGCAATCATTATATGCT 58.316 34.615 0.00 0.00 39.94 3.79
3184 3585 8.547967 TGTTAGGTAATCAAAGTCATCTTGTC 57.452 34.615 0.00 0.00 33.79 3.18
3206 3607 8.158169 TGTCTATATTCATCAAAATGCTGTCC 57.842 34.615 0.00 0.00 32.58 4.02
3214 3615 5.302568 TCATCAAAATGCTGTCCAGAAACTT 59.697 36.000 0.00 0.00 32.58 2.66
3215 3616 5.186996 TCAAAATGCTGTCCAGAAACTTC 57.813 39.130 0.00 0.00 0.00 3.01
3230 3631 9.793259 TCCAGAAACTTCTTTATTATGTTCAGT 57.207 29.630 0.00 0.00 34.74 3.41
3241 3642 9.630098 CTTTATTATGTTCAGTTCTTTGCACAT 57.370 29.630 0.00 0.00 38.27 3.21
3315 3716 5.297776 ACTTGAAAGGATCACAAAGTGACAG 59.702 40.000 1.43 0.00 45.65 3.51
3326 3727 3.562973 ACAAAGTGACAGAGTGCATCTTG 59.437 43.478 0.00 0.00 35.47 3.02
3454 3855 6.663944 AGTTACAGAAGTCAGAACAAACAC 57.336 37.500 0.00 0.00 0.00 3.32
3588 3989 5.596361 TCTGTGGACATGTTAAATTTGTGGT 59.404 36.000 0.00 0.00 0.00 4.16
3834 4235 9.152595 CCTTTTATGTAACTTGTTCTAGGAGAC 57.847 37.037 0.00 0.00 0.00 3.36
3840 4241 6.774170 TGTAACTTGTTCTAGGAGACACTGTA 59.226 38.462 0.00 0.00 0.00 2.74
3889 4290 6.650807 TCTGTGACATGTTAGAAGGAACATTC 59.349 38.462 0.00 0.00 45.65 2.67
3890 4291 5.408299 TGTGACATGTTAGAAGGAACATTCG 59.592 40.000 0.00 0.00 45.65 3.34
3891 4292 5.637810 GTGACATGTTAGAAGGAACATTCGA 59.362 40.000 0.00 0.00 45.65 3.71
3892 4293 5.637810 TGACATGTTAGAAGGAACATTCGAC 59.362 40.000 0.00 0.00 45.65 4.20
4239 4643 7.719483 TCACTGATTTCTTTCTGCTGATTTTT 58.281 30.769 0.00 0.00 0.00 1.94
4258 4662 8.435982 TGATTTTTCCATGTTTCCTAATGGTTT 58.564 29.630 1.86 0.00 43.31 3.27
4302 4706 9.855021 GGAAGTTTAATTAGCATGTACAATTGT 57.145 29.630 16.68 16.68 0.00 2.71
4472 4876 6.613755 TGACAAAGTAGAAGTTTAGTTGGC 57.386 37.500 0.00 0.00 0.00 4.52
4481 4885 9.872721 AGTAGAAGTTTAGTTGGCTAGTTAATC 57.127 33.333 0.00 0.00 0.00 1.75
4487 4891 6.614694 TTAGTTGGCTAGTTAATCTGGTGA 57.385 37.500 0.00 0.00 0.00 4.02
4503 4907 1.072331 GGTGAGAAGTTCAGGCTTCCA 59.928 52.381 5.50 0.00 44.27 3.53
4505 4909 2.050144 TGAGAAGTTCAGGCTTCCAGT 58.950 47.619 5.50 0.00 44.27 4.00
4509 4913 4.837972 AGAAGTTCAGGCTTCCAGTAATC 58.162 43.478 5.50 0.00 44.27 1.75
4516 4920 1.539280 GGCTTCCAGTAATCGAGCTCC 60.539 57.143 8.47 0.00 33.96 4.70
4529 4933 4.650754 TCGAGCTCCTATTTTGGACTAC 57.349 45.455 8.47 0.00 31.94 2.73
4539 4943 7.667557 TCCTATTTTGGACTACATATTCCTCG 58.332 38.462 0.00 0.00 32.55 4.63
4544 4948 7.649533 TTTGGACTACATATTCCTCGTTAGA 57.350 36.000 0.00 0.00 32.55 2.10
4546 4950 7.649533 TGGACTACATATTCCTCGTTAGAAA 57.350 36.000 0.00 0.00 32.55 2.52
4572 4976 3.618690 AGAGGAGTACATTTGACAGCC 57.381 47.619 0.00 0.00 0.00 4.85
4574 4978 3.055530 AGAGGAGTACATTTGACAGCCTG 60.056 47.826 0.00 0.00 0.00 4.85
4579 4986 4.067896 AGTACATTTGACAGCCTGACTTG 58.932 43.478 0.00 0.00 0.00 3.16
4627 5036 3.458118 TGATCCCCGTGAATTAGGAATGT 59.542 43.478 0.00 0.00 30.71 2.71
4644 5053 4.321008 GGAATGTCAGTCACGAGTACAGAA 60.321 45.833 2.27 0.00 0.00 3.02
4645 5054 4.848562 ATGTCAGTCACGAGTACAGAAA 57.151 40.909 0.00 0.00 0.00 2.52
4757 5166 6.992715 AGGTTCTCATTCCTAATTATTGACCG 59.007 38.462 0.00 0.00 31.66 4.79
4785 5203 7.735326 AAAAAGACCAGGCTACTAGATTCTA 57.265 36.000 0.00 0.00 0.00 2.10
4807 5225 2.001872 GACATCATGTGCACGTCATCA 58.998 47.619 9.07 0.00 0.00 3.07
4819 5266 1.269051 ACGTCATCATATTCTCGCGCA 60.269 47.619 8.75 0.00 0.00 6.09
4832 5279 2.354510 TCTCGCGCAATTTTATCCTTGG 59.645 45.455 8.75 0.00 0.00 3.61
4834 5281 1.468908 CGCGCAATTTTATCCTTGGCA 60.469 47.619 8.75 0.00 0.00 4.92
4924 5379 5.559427 TGACATGAAAATACAATCCACGG 57.441 39.130 0.00 0.00 0.00 4.94
4984 5439 9.310716 GTACCCTTAGCATATATCGGAATTTAC 57.689 37.037 0.00 0.00 0.00 2.01
5025 5481 8.268878 AGAAGAGGTAACATAATAGCTTGGAT 57.731 34.615 0.00 0.00 41.41 3.41
5079 5537 2.490328 TTTGTCGCCAAGCAAAAGAG 57.510 45.000 0.00 0.00 32.46 2.85
5112 5575 8.964476 AACTACCCTACAACAAATCTATCATG 57.036 34.615 0.00 0.00 0.00 3.07
5114 5577 5.133221 ACCCTACAACAAATCTATCATGGC 58.867 41.667 0.00 0.00 0.00 4.40
5116 5579 5.593909 CCCTACAACAAATCTATCATGGCAA 59.406 40.000 0.00 0.00 0.00 4.52
5140 5603 7.734924 AATGGCATACATAGTATGTTGACTG 57.265 36.000 20.52 13.55 41.63 3.51
5146 5609 7.201644 GCATACATAGTATGTTGACTGCTTTGT 60.202 37.037 20.52 0.00 41.63 2.83
5154 5617 3.066621 TGTTGACTGCTTTGTGGATTGTC 59.933 43.478 0.00 0.00 0.00 3.18
5249 6846 6.293407 GGGTTATGTGGATATCAATTGTGACG 60.293 42.308 5.13 0.00 36.31 4.35
5340 8272 3.992943 TCTAGGGTTACAATGGGTGTG 57.007 47.619 0.00 0.00 41.89 3.82
5419 8352 8.633561 CCAAAACAAGATCCTAAGAAAAAGTCT 58.366 33.333 0.00 0.00 38.69 3.24
5457 8390 2.027745 AGCCACTCTACATGACCACTTG 60.028 50.000 0.00 0.00 0.00 3.16
5460 8393 4.383118 GCCACTCTACATGACCACTTGTAT 60.383 45.833 0.00 0.00 36.53 2.29
5466 8399 9.959721 ACTCTACATGACCACTTGTATATTTTT 57.040 29.630 0.00 0.00 36.53 1.94
5486 8419 5.772393 TTTTCCACATATCCAGTACCAGT 57.228 39.130 0.00 0.00 0.00 4.00
5489 8422 4.101114 TCCACATATCCAGTACCAGTGTT 58.899 43.478 0.00 0.00 0.00 3.32
5494 8428 6.655003 CACATATCCAGTACCAGTGTTTTTCT 59.345 38.462 0.00 0.00 0.00 2.52
5526 8460 2.304180 ACCATGCCCATATAGAGTGAGC 59.696 50.000 0.00 0.00 0.00 4.26
5531 8465 4.483950 TGCCCATATAGAGTGAGCTAACT 58.516 43.478 2.31 2.31 0.00 2.24
5543 8477 5.017490 AGTGAGCTAACTCTACCTAGCAAA 58.983 41.667 0.00 0.00 43.85 3.68
5556 8490 4.711399 ACCTAGCAAACCTAGTTTTTCGT 58.289 39.130 0.00 0.00 41.68 3.85
5572 8506 5.927954 TTTTCGTAGGTCAAACCACATAC 57.072 39.130 0.00 0.00 41.95 2.39
5573 8507 4.877378 TTCGTAGGTCAAACCACATACT 57.123 40.909 0.00 0.00 41.95 2.12
5574 8508 5.981088 TTCGTAGGTCAAACCACATACTA 57.019 39.130 0.00 0.00 41.95 1.82
5590 8524 8.893727 ACCACATACTATCATTTTTGTTCTAGC 58.106 33.333 0.00 0.00 0.00 3.42
5592 8526 9.708222 CACATACTATCATTTTTGTTCTAGCAC 57.292 33.333 0.00 0.00 0.00 4.40
5599 8533 4.727507 TTTTTGTTCTAGCACTGGCAAA 57.272 36.364 0.00 0.00 44.61 3.68
5602 8536 1.142870 TGTTCTAGCACTGGCAAACCT 59.857 47.619 0.00 0.00 44.61 3.50
5650 8584 3.010584 AGCTCCACCACCTTTGAACATAT 59.989 43.478 0.00 0.00 0.00 1.78
5660 8595 6.818142 CCACCTTTGAACATATCATTTTTCCC 59.182 38.462 0.00 0.00 38.03 3.97
5662 8597 6.042143 CCTTTGAACATATCATTTTTCCCGG 58.958 40.000 0.00 0.00 38.03 5.73
5663 8598 4.647424 TGAACATATCATTTTTCCCGGC 57.353 40.909 0.00 0.00 31.50 6.13
5664 8599 4.019858 TGAACATATCATTTTTCCCGGCA 58.980 39.130 0.00 0.00 31.50 5.69
5665 8600 4.142271 TGAACATATCATTTTTCCCGGCAC 60.142 41.667 0.00 0.00 31.50 5.01
5667 8602 4.023291 ACATATCATTTTTCCCGGCACTT 58.977 39.130 0.00 0.00 0.00 3.16
5674 8609 2.632602 TTTCCCGGCACTTTGGAGCA 62.633 55.000 0.00 0.00 0.00 4.26
5680 8615 2.029470 CCGGCACTTTGGAGCATTTTTA 60.029 45.455 0.00 0.00 0.00 1.52
5692 8627 7.466746 TGGAGCATTTTTAGTTTGCTTCTAT 57.533 32.000 4.26 0.00 46.21 1.98
5693 8628 8.574251 TGGAGCATTTTTAGTTTGCTTCTATA 57.426 30.769 4.26 0.00 46.21 1.31
5694 8629 9.189156 TGGAGCATTTTTAGTTTGCTTCTATAT 57.811 29.630 4.26 0.00 46.21 0.86
5704 8639 9.665719 TTAGTTTGCTTCTATATCATGTCACAA 57.334 29.630 0.00 0.00 0.00 3.33
5723 8658 3.053395 ACAATACAGGTCCGGTAGTCCTA 60.053 47.826 7.94 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 5.349817 GGCTGTATGGATTTGTGAGATATCG 59.650 44.000 0.00 0.00 0.00 2.92
63 65 0.107165 GGATAGGTGCACCCTTGGTC 60.107 60.000 32.29 20.67 42.73 4.02
139 149 8.677300 GCAGGATTGAGTTTAGTGAATTGATAA 58.323 33.333 0.00 0.00 0.00 1.75
159 169 2.843113 AGCCTTCAAGTTCTAGCAGGAT 59.157 45.455 0.00 0.00 0.00 3.24
225 243 7.450074 ACCGCTTGAGGTAATATATTGATTGA 58.550 34.615 8.28 0.00 43.89 2.57
254 290 3.003480 GCGACTTGCTTCTTGAGGTAAT 58.997 45.455 0.00 0.00 41.73 1.89
277 313 1.288335 ACGGTTCTCCTACCTGATCCT 59.712 52.381 0.00 0.00 35.97 3.24
286 329 0.541063 TCAGCCACACGGTTCTCCTA 60.541 55.000 0.00 0.00 33.28 2.94
327 370 1.805943 CTGACCAACGTGCAATCATCA 59.194 47.619 0.00 0.00 0.00 3.07
432 475 4.771114 TGTCTTCTCAAAACCTCCTTGA 57.229 40.909 0.00 0.00 0.00 3.02
584 628 9.791801 ATGGATTTATGCTTGTATGTACATGTA 57.208 29.630 18.81 0.08 35.89 2.29
585 629 8.696043 ATGGATTTATGCTTGTATGTACATGT 57.304 30.769 18.81 2.69 35.89 3.21
593 640 9.231297 GTACATGGTATGGATTTATGCTTGTAT 57.769 33.333 0.00 0.00 33.60 2.29
637 806 8.964476 TTCTTTTCAAATACTCACTCTGTTCT 57.036 30.769 0.00 0.00 0.00 3.01
646 815 9.300681 AGACCATCATTTCTTTTCAAATACTCA 57.699 29.630 0.00 0.00 0.00 3.41
656 825 6.546484 TCCTGAGAAGACCATCATTTCTTTT 58.454 36.000 0.00 0.00 32.04 2.27
677 846 4.712051 TCATCCATCGAATTCCATTCCT 57.288 40.909 0.00 0.00 35.89 3.36
760 935 6.819649 TGACACACTTATTTTAATACGGAGGG 59.180 38.462 0.00 0.00 0.00 4.30
761 936 7.837202 TGACACACTTATTTTAATACGGAGG 57.163 36.000 0.00 0.00 0.00 4.30
762 937 9.314321 AGATGACACACTTATTTTAATACGGAG 57.686 33.333 0.00 0.00 0.00 4.63
763 938 9.661563 AAGATGACACACTTATTTTAATACGGA 57.338 29.630 0.00 0.00 0.00 4.69
793 968 9.662947 AGTCACTTAAGTTTAGTACAACTTTGT 57.337 29.630 14.44 11.54 43.17 2.83
795 970 9.880157 TGAGTCACTTAAGTTTAGTACAACTTT 57.120 29.630 14.44 0.00 43.17 2.66
806 981 8.557029 CCGTCTTAAAATGAGTCACTTAAGTTT 58.443 33.333 23.37 8.27 34.44 2.66
807 982 7.929785 TCCGTCTTAAAATGAGTCACTTAAGTT 59.070 33.333 23.37 0.00 34.44 2.66
808 983 7.384387 GTCCGTCTTAAAATGAGTCACTTAAGT 59.616 37.037 23.37 1.12 34.44 2.24
809 984 7.410513 CGTCCGTCTTAAAATGAGTCACTTAAG 60.411 40.741 20.76 20.76 34.21 1.85
810 985 6.364165 CGTCCGTCTTAAAATGAGTCACTTAA 59.636 38.462 0.00 2.18 0.00 1.85
811 986 5.860182 CGTCCGTCTTAAAATGAGTCACTTA 59.140 40.000 0.00 0.00 0.00 2.24
812 987 4.684703 CGTCCGTCTTAAAATGAGTCACTT 59.315 41.667 0.00 0.00 0.00 3.16
813 988 4.022589 TCGTCCGTCTTAAAATGAGTCACT 60.023 41.667 0.00 0.00 0.00 3.41
814 989 4.232221 TCGTCCGTCTTAAAATGAGTCAC 58.768 43.478 0.00 0.00 0.00 3.67
815 990 4.022589 ACTCGTCCGTCTTAAAATGAGTCA 60.023 41.667 0.00 0.00 33.78 3.41
816 991 4.483311 ACTCGTCCGTCTTAAAATGAGTC 58.517 43.478 0.00 0.00 33.78 3.36
817 992 4.516365 ACTCGTCCGTCTTAAAATGAGT 57.484 40.909 0.00 0.00 34.09 3.41
818 993 8.798748 AATATACTCGTCCGTCTTAAAATGAG 57.201 34.615 0.00 0.00 0.00 2.90
819 994 9.590451 AAAATATACTCGTCCGTCTTAAAATGA 57.410 29.630 0.00 0.00 0.00 2.57
846 1021 1.150536 AAGCCCACGCAGGAGAAAA 59.849 52.632 0.00 0.00 41.22 2.29
874 1049 0.532196 CCGGTAAGAAATCGGGCCTC 60.532 60.000 0.84 0.00 40.07 4.70
875 1050 1.525442 CCGGTAAGAAATCGGGCCT 59.475 57.895 0.84 0.00 40.07 5.19
899 1074 2.235898 AGTTGCCTCCTCATTCTGTCTC 59.764 50.000 0.00 0.00 0.00 3.36
900 1075 2.027377 CAGTTGCCTCCTCATTCTGTCT 60.027 50.000 0.00 0.00 0.00 3.41
901 1076 2.354259 CAGTTGCCTCCTCATTCTGTC 58.646 52.381 0.00 0.00 0.00 3.51
902 1077 1.612726 GCAGTTGCCTCCTCATTCTGT 60.613 52.381 0.00 0.00 34.31 3.41
903 1078 1.093159 GCAGTTGCCTCCTCATTCTG 58.907 55.000 0.00 0.00 34.31 3.02
904 1079 0.990374 AGCAGTTGCCTCCTCATTCT 59.010 50.000 0.00 0.00 43.38 2.40
905 1080 2.284190 GTAGCAGTTGCCTCCTCATTC 58.716 52.381 0.00 0.00 43.38 2.67
906 1081 1.406069 CGTAGCAGTTGCCTCCTCATT 60.406 52.381 0.00 0.00 43.38 2.57
907 1082 0.176680 CGTAGCAGTTGCCTCCTCAT 59.823 55.000 0.00 0.00 43.38 2.90
908 1083 1.591703 CGTAGCAGTTGCCTCCTCA 59.408 57.895 0.00 0.00 43.38 3.86
909 1084 4.504132 CGTAGCAGTTGCCTCCTC 57.496 61.111 0.00 0.00 43.38 3.71
950 1125 9.959749 GGTTTTTCTTTTCTTTTTGAGGTTTTT 57.040 25.926 0.00 0.00 0.00 1.94
951 1126 8.573035 GGGTTTTTCTTTTCTTTTTGAGGTTTT 58.427 29.630 0.00 0.00 0.00 2.43
952 1127 7.942341 AGGGTTTTTCTTTTCTTTTTGAGGTTT 59.058 29.630 0.00 0.00 0.00 3.27
953 1128 7.458397 AGGGTTTTTCTTTTCTTTTTGAGGTT 58.542 30.769 0.00 0.00 0.00 3.50
954 1129 7.016153 AGGGTTTTTCTTTTCTTTTTGAGGT 57.984 32.000 0.00 0.00 0.00 3.85
955 1130 6.538742 GGAGGGTTTTTCTTTTCTTTTTGAGG 59.461 38.462 0.00 0.00 0.00 3.86
956 1131 7.102993 TGGAGGGTTTTTCTTTTCTTTTTGAG 58.897 34.615 0.00 0.00 0.00 3.02
957 1132 7.010339 TGGAGGGTTTTTCTTTTCTTTTTGA 57.990 32.000 0.00 0.00 0.00 2.69
958 1133 7.680442 TTGGAGGGTTTTTCTTTTCTTTTTG 57.320 32.000 0.00 0.00 0.00 2.44
982 1190 4.109766 CCCGCGACTTTTTCTTTCTTTTT 58.890 39.130 8.23 0.00 0.00 1.94
1002 1210 4.581093 GGTGGGATAAGCCGGCCC 62.581 72.222 26.15 17.57 42.38 5.80
1004 1212 3.804329 TGGGTGGGATAAGCCGGC 61.804 66.667 21.89 21.89 40.78 6.13
1079 1290 2.203126 GGGCGGGCAGATGAGAAG 60.203 66.667 3.27 0.00 0.00 2.85
1096 1307 1.372087 GAAGACATGGCTGCGGAAGG 61.372 60.000 0.00 0.00 0.00 3.46
1097 1308 0.392193 AGAAGACATGGCTGCGGAAG 60.392 55.000 0.00 0.00 0.00 3.46
1098 1309 0.036732 AAGAAGACATGGCTGCGGAA 59.963 50.000 0.00 0.00 0.00 4.30
1200 1421 3.399181 GTGGTGGCCGAGATGGGA 61.399 66.667 0.00 0.00 38.63 4.37
1386 1610 3.284251 TGCCTCTCCCCCTCCTCA 61.284 66.667 0.00 0.00 0.00 3.86
1521 1745 1.077429 GGTGGGGAACATGGAGAGC 60.077 63.158 0.00 0.00 0.00 4.09
1585 1809 7.881643 ATATGATAAGTAAAAGAGCTGCGAG 57.118 36.000 0.00 0.00 0.00 5.03
1632 1856 9.658799 CAAACTCTTCAGGTTATAAATCTCTGA 57.341 33.333 0.00 0.00 33.30 3.27
1644 1868 3.554934 TCATGTGCAAACTCTTCAGGTT 58.445 40.909 0.00 0.00 0.00 3.50
1650 1874 2.541588 GCGTGTTCATGTGCAAACTCTT 60.542 45.455 0.00 0.00 0.00 2.85
1651 1875 1.002468 GCGTGTTCATGTGCAAACTCT 60.002 47.619 0.00 0.00 0.00 3.24
1670 1894 5.358160 AGTGCAGAATGAAATAAACTAGGGC 59.642 40.000 0.00 0.00 39.69 5.19
1671 1895 6.375455 ACAGTGCAGAATGAAATAAACTAGGG 59.625 38.462 0.00 0.00 39.69 3.53
1672 1896 7.119699 TGACAGTGCAGAATGAAATAAACTAGG 59.880 37.037 0.00 0.00 39.69 3.02
1673 1897 7.959651 GTGACAGTGCAGAATGAAATAAACTAG 59.040 37.037 0.00 0.00 39.69 2.57
1674 1898 7.443879 TGTGACAGTGCAGAATGAAATAAACTA 59.556 33.333 0.00 0.00 39.69 2.24
1675 1899 6.262944 TGTGACAGTGCAGAATGAAATAAACT 59.737 34.615 0.00 0.00 39.69 2.66
1678 1902 6.822667 ATGTGACAGTGCAGAATGAAATAA 57.177 33.333 0.00 0.00 39.69 1.40
1679 1903 6.430616 TGAATGTGACAGTGCAGAATGAAATA 59.569 34.615 0.00 0.00 39.69 1.40
1680 1904 5.242171 TGAATGTGACAGTGCAGAATGAAAT 59.758 36.000 0.00 0.00 39.69 2.17
1681 1905 4.579753 TGAATGTGACAGTGCAGAATGAAA 59.420 37.500 0.00 0.00 39.69 2.69
1683 1907 3.742385 TGAATGTGACAGTGCAGAATGA 58.258 40.909 0.00 0.00 39.69 2.57
1684 1908 4.082949 ACATGAATGTGACAGTGCAGAATG 60.083 41.667 0.00 0.00 40.03 2.67
1685 1909 4.077108 ACATGAATGTGACAGTGCAGAAT 58.923 39.130 0.00 0.00 40.03 2.40
1686 1910 3.479489 ACATGAATGTGACAGTGCAGAA 58.521 40.909 0.00 0.00 40.03 3.02
1687 1911 3.130280 ACATGAATGTGACAGTGCAGA 57.870 42.857 0.00 0.00 40.03 4.26
1688 1912 3.909776 AACATGAATGTGACAGTGCAG 57.090 42.857 0.00 0.00 41.61 4.41
1689 1913 3.631227 TGAAACATGAATGTGACAGTGCA 59.369 39.130 0.00 0.00 41.61 4.57
1690 1914 4.023792 TCTGAAACATGAATGTGACAGTGC 60.024 41.667 19.77 0.00 41.61 4.40
1691 1915 5.237996 AGTCTGAAACATGAATGTGACAGTG 59.762 40.000 19.77 0.00 41.61 3.66
1693 1917 5.686834 CAGTCTGAAACATGAATGTGACAG 58.313 41.667 16.91 16.91 41.61 3.51
1695 1919 4.023792 TGCAGTCTGAAACATGAATGTGAC 60.024 41.667 3.32 2.38 41.61 3.67
1696 1920 4.136051 TGCAGTCTGAAACATGAATGTGA 58.864 39.130 3.32 0.00 41.61 3.58
1697 1921 4.473199 CTGCAGTCTGAAACATGAATGTG 58.527 43.478 5.25 0.00 41.61 3.21
1698 1922 3.504906 CCTGCAGTCTGAAACATGAATGT 59.495 43.478 13.81 0.00 44.20 2.71
1699 1923 3.754850 TCCTGCAGTCTGAAACATGAATG 59.245 43.478 13.81 0.00 0.00 2.67
1700 1924 4.025040 TCCTGCAGTCTGAAACATGAAT 57.975 40.909 13.81 0.00 0.00 2.57
1701 1925 3.490439 TCCTGCAGTCTGAAACATGAA 57.510 42.857 13.81 0.00 0.00 2.57
1702 1926 3.071457 TCTTCCTGCAGTCTGAAACATGA 59.929 43.478 13.81 0.47 0.00 3.07
1703 1927 3.405831 TCTTCCTGCAGTCTGAAACATG 58.594 45.455 13.81 0.00 0.00 3.21
1704 1928 3.777106 TCTTCCTGCAGTCTGAAACAT 57.223 42.857 13.81 0.00 0.00 2.71
1705 1929 3.777106 ATCTTCCTGCAGTCTGAAACA 57.223 42.857 13.81 0.00 0.00 2.83
1706 1930 6.549952 CATTTATCTTCCTGCAGTCTGAAAC 58.450 40.000 13.81 0.00 0.00 2.78
1736 1967 5.048507 GGTAATACTAAAGACTCGGCTTGG 58.951 45.833 0.00 0.00 0.00 3.61
1742 1973 5.361857 TCCAAGGGGTAATACTAAAGACTCG 59.638 44.000 0.00 0.00 34.93 4.18
1746 1977 8.711170 CACTATTCCAAGGGGTAATACTAAAGA 58.289 37.037 0.00 0.00 34.93 2.52
1747 1978 8.711170 TCACTATTCCAAGGGGTAATACTAAAG 58.289 37.037 0.00 0.00 34.93 1.85
1750 1981 7.624478 TGTTCACTATTCCAAGGGGTAATACTA 59.376 37.037 0.00 0.00 34.93 1.82
1767 1998 9.601217 GAAAGTATACTTGATGGTGTTCACTAT 57.399 33.333 18.70 1.62 36.12 2.12
1768 1999 8.812972 AGAAAGTATACTTGATGGTGTTCACTA 58.187 33.333 18.70 0.00 36.12 2.74
1772 2003 9.654663 ACTTAGAAAGTATACTTGATGGTGTTC 57.345 33.333 18.70 9.74 40.69 3.18
1789 2024 9.285770 GTTTGGTTCAACTTTACACTTAGAAAG 57.714 33.333 0.00 0.00 38.40 2.62
1801 2036 6.553476 AGCCCTATAAAGTTTGGTTCAACTTT 59.447 34.615 14.25 14.25 33.26 2.66
1806 2041 5.007682 GTGAGCCCTATAAAGTTTGGTTCA 58.992 41.667 5.48 5.48 34.50 3.18
1807 2042 5.254115 AGTGAGCCCTATAAAGTTTGGTTC 58.746 41.667 0.00 0.00 0.00 3.62
1834 2069 5.818136 TGATGTTTAACATAAGCTGGAGC 57.182 39.130 10.82 0.00 39.27 4.70
1879 2116 6.037940 CAGCACATTGACTGCTAATTATGAGT 59.962 38.462 1.84 0.00 43.34 3.41
1880 2117 6.037940 ACAGCACATTGACTGCTAATTATGAG 59.962 38.462 10.13 0.00 43.34 2.90
1891 2173 5.749588 TCATTTCAAAACAGCACATTGACTG 59.250 36.000 9.06 9.06 39.86 3.51
1980 2285 6.795399 GCAAAGCTAGTATCCTAATTTGCAA 58.205 36.000 16.44 0.00 44.96 4.08
1989 2294 1.839994 TGCCTGCAAAGCTAGTATCCT 59.160 47.619 9.57 0.00 0.00 3.24
2017 2322 8.311395 TGATCTTATCCAACACTACAAGAGAT 57.689 34.615 0.00 0.00 0.00 2.75
2073 2378 7.922811 GCAAAGCTAGTATCCTAATTTGCAATT 59.077 33.333 16.44 0.00 44.96 2.32
2074 2379 7.428826 GCAAAGCTAGTATCCTAATTTGCAAT 58.571 34.615 16.44 0.00 44.96 3.56
2075 2380 6.795399 GCAAAGCTAGTATCCTAATTTGCAA 58.205 36.000 16.44 0.00 44.96 4.08
2076 2381 6.377327 GCAAAGCTAGTATCCTAATTTGCA 57.623 37.500 16.44 0.00 44.96 4.08
2077 2382 6.377327 TGCAAAGCTAGTATCCTAATTTGC 57.623 37.500 15.30 15.30 45.33 3.68
2078 2383 6.514048 GCCTGCAAAGCTAGTATCCTAATTTG 60.514 42.308 1.17 0.00 35.26 2.32
2079 2384 5.532779 GCCTGCAAAGCTAGTATCCTAATTT 59.467 40.000 1.17 0.00 0.00 1.82
2080 2385 5.066593 GCCTGCAAAGCTAGTATCCTAATT 58.933 41.667 1.17 0.00 0.00 1.40
2081 2386 4.103153 TGCCTGCAAAGCTAGTATCCTAAT 59.897 41.667 9.57 0.00 0.00 1.73
2082 2387 3.454447 TGCCTGCAAAGCTAGTATCCTAA 59.546 43.478 9.57 0.00 0.00 2.69
2083 2388 3.038280 TGCCTGCAAAGCTAGTATCCTA 58.962 45.455 9.57 0.00 0.00 2.94
2084 2389 1.839994 TGCCTGCAAAGCTAGTATCCT 59.160 47.619 9.57 0.00 0.00 3.24
2085 2390 2.332063 TGCCTGCAAAGCTAGTATCC 57.668 50.000 9.57 0.00 0.00 2.59
2086 2391 3.004106 CCATTGCCTGCAAAGCTAGTATC 59.996 47.826 8.84 0.00 39.55 2.24
2087 2392 2.954318 CCATTGCCTGCAAAGCTAGTAT 59.046 45.455 8.84 0.00 39.55 2.12
2088 2393 2.368439 CCATTGCCTGCAAAGCTAGTA 58.632 47.619 8.84 0.00 39.55 1.82
2089 2394 1.180029 CCATTGCCTGCAAAGCTAGT 58.820 50.000 8.84 0.00 39.55 2.57
2090 2395 0.179119 GCCATTGCCTGCAAAGCTAG 60.179 55.000 17.84 4.93 39.55 3.42
2091 2396 0.612732 AGCCATTGCCTGCAAAGCTA 60.613 50.000 23.26 2.77 43.22 3.32
2092 2397 1.911766 AGCCATTGCCTGCAAAGCT 60.912 52.632 20.57 20.57 41.56 3.74
2093 2398 1.740296 CAGCCATTGCCTGCAAAGC 60.740 57.895 17.57 17.57 39.55 3.51
2094 2399 0.535335 ATCAGCCATTGCCTGCAAAG 59.465 50.000 8.84 4.33 39.55 2.77
2095 2400 0.533491 GATCAGCCATTGCCTGCAAA 59.467 50.000 8.84 0.00 39.55 3.68
2096 2401 0.323999 AGATCAGCCATTGCCTGCAA 60.324 50.000 7.06 7.06 40.47 4.08
2097 2402 0.750546 GAGATCAGCCATTGCCTGCA 60.751 55.000 0.00 0.00 38.69 4.41
2098 2403 0.465824 AGAGATCAGCCATTGCCTGC 60.466 55.000 0.00 0.00 38.69 4.85
2099 2404 1.676529 CAAGAGATCAGCCATTGCCTG 59.323 52.381 0.00 0.00 38.69 4.85
2100 2405 1.284198 ACAAGAGATCAGCCATTGCCT 59.716 47.619 0.00 0.00 38.69 4.75
2101 2406 1.760192 ACAAGAGATCAGCCATTGCC 58.240 50.000 0.00 0.00 38.69 4.52
2102 2407 3.311871 CACTACAAGAGATCAGCCATTGC 59.688 47.826 0.00 0.00 37.95 3.56
2103 2408 4.511527 ACACTACAAGAGATCAGCCATTG 58.488 43.478 0.00 0.00 0.00 2.82
2104 2409 4.833478 ACACTACAAGAGATCAGCCATT 57.167 40.909 0.00 0.00 0.00 3.16
2105 2410 4.511527 CAACACTACAAGAGATCAGCCAT 58.488 43.478 0.00 0.00 0.00 4.40
2106 2411 3.306989 CCAACACTACAAGAGATCAGCCA 60.307 47.826 0.00 0.00 0.00 4.75
2107 2412 3.055819 TCCAACACTACAAGAGATCAGCC 60.056 47.826 0.00 0.00 0.00 4.85
2108 2413 4.193826 TCCAACACTACAAGAGATCAGC 57.806 45.455 0.00 0.00 0.00 4.26
2109 2414 7.776107 TCTTATCCAACACTACAAGAGATCAG 58.224 38.462 0.00 0.00 0.00 2.90
2110 2415 7.718334 TCTTATCCAACACTACAAGAGATCA 57.282 36.000 0.00 0.00 0.00 2.92
2111 2416 8.637986 AGATCTTATCCAACACTACAAGAGATC 58.362 37.037 0.00 0.00 37.25 2.75
2112 2417 8.546083 AGATCTTATCCAACACTACAAGAGAT 57.454 34.615 0.00 0.00 0.00 2.75
2113 2418 7.962995 AGATCTTATCCAACACTACAAGAGA 57.037 36.000 0.00 0.00 0.00 3.10
2115 2420 9.871238 GTTAAGATCTTATCCAACACTACAAGA 57.129 33.333 15.82 0.00 0.00 3.02
2116 2421 9.653287 TGTTAAGATCTTATCCAACACTACAAG 57.347 33.333 15.82 0.00 32.82 3.16
2117 2422 9.653287 CTGTTAAGATCTTATCCAACACTACAA 57.347 33.333 15.82 0.00 33.66 2.41
2118 2423 8.258007 CCTGTTAAGATCTTATCCAACACTACA 58.742 37.037 15.82 12.02 33.66 2.74
2119 2424 8.258708 ACCTGTTAAGATCTTATCCAACACTAC 58.741 37.037 15.82 8.31 33.66 2.73
2120 2425 8.258007 CACCTGTTAAGATCTTATCCAACACTA 58.742 37.037 15.82 0.00 33.66 2.74
2121 2426 7.106239 CACCTGTTAAGATCTTATCCAACACT 58.894 38.462 15.82 3.06 33.66 3.55
2122 2427 6.183360 GCACCTGTTAAGATCTTATCCAACAC 60.183 42.308 15.82 10.27 33.66 3.32
2123 2428 5.880332 GCACCTGTTAAGATCTTATCCAACA 59.120 40.000 15.82 16.37 35.06 3.33
2124 2429 5.880332 TGCACCTGTTAAGATCTTATCCAAC 59.120 40.000 15.82 12.88 0.00 3.77
2125 2430 6.061022 TGCACCTGTTAAGATCTTATCCAA 57.939 37.500 15.82 0.05 0.00 3.53
2126 2431 5.692115 TGCACCTGTTAAGATCTTATCCA 57.308 39.130 15.82 13.76 0.00 3.41
2127 2432 7.121315 ACTTTTGCACCTGTTAAGATCTTATCC 59.879 37.037 15.82 10.18 0.00 2.59
2128 2433 8.045176 ACTTTTGCACCTGTTAAGATCTTATC 57.955 34.615 15.82 14.94 0.00 1.75
2129 2434 9.686683 ATACTTTTGCACCTGTTAAGATCTTAT 57.313 29.630 15.82 0.00 0.00 1.73
2131 2436 9.515226 TTATACTTTTGCACCTGTTAAGATCTT 57.485 29.630 13.56 13.56 0.00 2.40
2132 2437 9.686683 ATTATACTTTTGCACCTGTTAAGATCT 57.313 29.630 0.00 0.00 0.00 2.75
2253 2563 4.771590 TTCAGATTTTCAGTCATGCCAC 57.228 40.909 0.00 0.00 0.00 5.01
2259 2569 9.996554 TTGTCTATAGTTTCAGATTTTCAGTCA 57.003 29.630 0.00 0.00 0.00 3.41
2339 2699 4.881920 ACCAAACACAATATGGTCAAAGC 58.118 39.130 0.00 0.00 43.90 3.51
2560 2929 2.403252 GCTTGTAGGTGCCATAGTGT 57.597 50.000 0.00 0.00 0.00 3.55
2658 3039 9.851686 ATGTAACCTGAGAAATATTGCTATTGA 57.148 29.630 0.00 0.00 0.00 2.57
2664 3045 9.765795 AGTAGTATGTAACCTGAGAAATATTGC 57.234 33.333 0.00 0.00 0.00 3.56
2692 3073 6.293081 CGATATCATTTACACAAGGCTTCCTG 60.293 42.308 0.00 0.00 32.13 3.86
2716 3097 4.398044 ACTGGTGGGCTTTTGAATATTACG 59.602 41.667 0.00 0.00 0.00 3.18
2758 3139 3.617263 GGAAACACTGCATCTAAGTACGG 59.383 47.826 0.00 0.00 0.00 4.02
2762 3143 4.623932 TCTGGAAACACTGCATCTAAGT 57.376 40.909 0.00 0.00 35.60 2.24
2885 3266 8.754991 TTTTATCCTGAAACTAACCTCAACAA 57.245 30.769 0.00 0.00 0.00 2.83
2909 3290 8.617290 ACAGATATTCACCTAAAGTTCGTTTT 57.383 30.769 0.00 0.00 0.00 2.43
2958 3339 7.444487 AGGAGAAACATACTAACTGGTGAAAAC 59.556 37.037 0.00 0.00 0.00 2.43
2962 3343 6.681729 AAGGAGAAACATACTAACTGGTGA 57.318 37.500 0.00 0.00 0.00 4.02
2963 3344 8.095169 ACTTAAGGAGAAACATACTAACTGGTG 58.905 37.037 7.53 0.00 0.00 4.17
2964 3345 8.203681 ACTTAAGGAGAAACATACTAACTGGT 57.796 34.615 7.53 0.00 0.00 4.00
2976 3374 6.116126 ACCTCATGCATACTTAAGGAGAAAC 58.884 40.000 7.53 0.00 0.00 2.78
2980 3379 7.445121 TCATTACCTCATGCATACTTAAGGAG 58.555 38.462 7.53 0.00 0.00 3.69
2990 3389 3.825014 GCTGGAATCATTACCTCATGCAT 59.175 43.478 0.00 0.00 0.00 3.96
2993 3392 3.824133 TGGCTGGAATCATTACCTCATG 58.176 45.455 0.00 0.00 0.00 3.07
3005 3404 2.905415 TCCTCACAATTGGCTGGAAT 57.095 45.000 10.83 0.00 0.00 3.01
3016 3415 5.163311 TGAGAAACTGAGAACATCCTCACAA 60.163 40.000 0.00 0.00 38.18 3.33
3096 3495 8.954350 AGATTAGCATATAATGATTGCCTTCAC 58.046 33.333 0.00 0.00 37.07 3.18
3184 3585 8.387190 TCTGGACAGCATTTTGATGAATATAG 57.613 34.615 0.00 0.00 35.45 1.31
3214 3615 8.845227 TGTGCAAAGAACTGAACATAATAAAGA 58.155 29.630 0.00 0.00 29.34 2.52
3215 3616 9.630098 ATGTGCAAAGAACTGAACATAATAAAG 57.370 29.630 0.00 0.00 42.74 1.85
3230 3631 5.538053 TGTTCTAATTGGGATGTGCAAAGAA 59.462 36.000 0.00 0.00 0.00 2.52
3241 3642 4.922206 AGCATGTTCTGTTCTAATTGGGA 58.078 39.130 0.00 0.00 0.00 4.37
3286 3687 8.912988 TCACTTTGTGATCCTTTCAAGTTATTT 58.087 29.630 0.00 0.00 37.67 1.40
3300 3701 3.133691 TGCACTCTGTCACTTTGTGATC 58.866 45.455 3.65 0.00 44.63 2.92
3326 3727 8.427012 CAAAATATTTGGTCGTATTGCATATGC 58.573 33.333 21.09 21.09 42.50 3.14
3454 3855 6.147821 ACACTTTGTGTCTATTTTCTCATCCG 59.852 38.462 0.00 0.00 43.92 4.18
3486 3887 5.953571 ACCAAGGGTGTCTTTCTTCTAATT 58.046 37.500 0.00 0.00 32.98 1.40
3565 3966 5.841810 ACCACAAATTTAACATGTCCACAG 58.158 37.500 0.00 0.00 0.00 3.66
3588 3989 5.832595 TCTGGTGTTTCCATGAGAAATTTGA 59.167 36.000 11.07 5.39 45.99 2.69
3834 4235 6.485313 TGGTTCATAAGACAAAACCTACAGTG 59.515 38.462 4.90 0.00 41.41 3.66
3840 4241 8.704668 AGAAAAATGGTTCATAAGACAAAACCT 58.295 29.630 4.90 0.00 41.41 3.50
3889 4290 7.118390 ACCTCAACAATAATTTCTCTGAAGTCG 59.882 37.037 0.00 0.00 0.00 4.18
3890 4291 8.329203 ACCTCAACAATAATTTCTCTGAAGTC 57.671 34.615 0.00 0.00 0.00 3.01
3891 4292 8.697507 AACCTCAACAATAATTTCTCTGAAGT 57.302 30.769 0.00 0.00 0.00 3.01
3892 4293 8.239998 GGAACCTCAACAATAATTTCTCTGAAG 58.760 37.037 0.00 0.00 0.00 3.02
3951 4355 4.389374 GTTGACTTTCAGGGATTCTGTCA 58.611 43.478 0.00 0.00 43.76 3.58
4073 4477 6.240894 AGCTGAAAAGAACATCATGACCTAA 58.759 36.000 0.00 0.00 0.00 2.69
4239 4643 7.466804 AGAAGTAAACCATTAGGAAACATGGA 58.533 34.615 5.18 0.00 42.49 3.41
4258 4662 5.865085 ACTTCCACTGTTATGCAAGAAGTA 58.135 37.500 0.00 0.00 38.82 2.24
4302 4706 6.030082 AGAGGACCCCTGAAAAGAAATAGTA 58.970 40.000 0.00 0.00 31.76 1.82
4470 4874 5.346181 ACTTCTCACCAGATTAACTAGCC 57.654 43.478 0.00 0.00 0.00 3.93
4472 4876 7.038659 CCTGAACTTCTCACCAGATTAACTAG 58.961 42.308 0.00 0.00 0.00 2.57
4481 4885 2.421619 GAAGCCTGAACTTCTCACCAG 58.578 52.381 0.00 0.00 42.32 4.00
4487 4891 4.621747 CGATTACTGGAAGCCTGAACTTCT 60.622 45.833 4.46 0.00 44.51 2.85
4503 4907 5.364157 AGTCCAAAATAGGAGCTCGATTACT 59.636 40.000 7.83 7.33 38.64 2.24
4505 4909 5.871396 AGTCCAAAATAGGAGCTCGATTA 57.129 39.130 7.83 0.57 38.64 1.75
4509 4913 4.386867 TGTAGTCCAAAATAGGAGCTCG 57.613 45.455 7.83 0.00 38.64 5.03
4516 4920 8.888579 AACGAGGAATATGTAGTCCAAAATAG 57.111 34.615 8.98 0.00 42.60 1.73
4544 4948 9.388506 CTGTCAAATGTACTCCTCTATGAATTT 57.611 33.333 0.00 0.00 0.00 1.82
4546 4950 6.989169 GCTGTCAAATGTACTCCTCTATGAAT 59.011 38.462 0.00 0.00 0.00 2.57
4572 4976 5.181748 CCTTCCCTGATTTCTACAAGTCAG 58.818 45.833 0.00 0.00 43.04 3.51
4574 4978 4.225267 TCCCTTCCCTGATTTCTACAAGTC 59.775 45.833 0.00 0.00 0.00 3.01
4579 4986 4.569719 TGTTCCCTTCCCTGATTTCTAC 57.430 45.455 0.00 0.00 0.00 2.59
4613 5020 5.168569 TCGTGACTGACATTCCTAATTCAC 58.831 41.667 0.00 0.00 0.00 3.18
4627 5036 2.953648 TGGTTTCTGTACTCGTGACTGA 59.046 45.455 0.00 0.00 0.00 3.41
4766 5175 5.770663 TGTCATAGAATCTAGTAGCCTGGTC 59.229 44.000 0.00 0.00 0.00 4.02
4767 5176 5.706447 TGTCATAGAATCTAGTAGCCTGGT 58.294 41.667 0.00 0.00 0.00 4.00
4769 5178 7.459795 TGATGTCATAGAATCTAGTAGCCTG 57.540 40.000 0.00 0.00 0.00 4.85
4770 5179 7.673504 ACATGATGTCATAGAATCTAGTAGCCT 59.326 37.037 0.00 0.00 34.26 4.58
4771 5180 7.758980 CACATGATGTCATAGAATCTAGTAGCC 59.241 40.741 0.00 0.00 34.26 3.93
4772 5181 7.275341 GCACATGATGTCATAGAATCTAGTAGC 59.725 40.741 0.00 0.00 34.26 3.58
4773 5182 8.302438 TGCACATGATGTCATAGAATCTAGTAG 58.698 37.037 0.00 0.00 34.26 2.57
4774 5183 8.084684 GTGCACATGATGTCATAGAATCTAGTA 58.915 37.037 13.17 0.00 34.26 1.82
4775 5184 6.927936 GTGCACATGATGTCATAGAATCTAGT 59.072 38.462 13.17 0.00 34.26 2.57
4776 5185 6.089150 CGTGCACATGATGTCATAGAATCTAG 59.911 42.308 18.64 0.00 34.26 2.43
4777 5186 5.922544 CGTGCACATGATGTCATAGAATCTA 59.077 40.000 18.64 0.00 34.26 1.98
4778 5187 4.748600 CGTGCACATGATGTCATAGAATCT 59.251 41.667 18.64 0.00 34.26 2.40
4785 5203 2.097680 TGACGTGCACATGATGTCAT 57.902 45.000 18.64 0.00 34.85 3.06
4807 5225 6.373779 CAAGGATAAAATTGCGCGAGAATAT 58.626 36.000 12.10 1.01 0.00 1.28
4819 5266 5.163281 TGCACAATGCCAAGGATAAAATT 57.837 34.783 0.00 0.00 44.23 1.82
4832 5279 6.810182 AGAAAAGATAACTTCATGCACAATGC 59.190 34.615 0.00 0.00 38.52 3.56
4834 5281 8.362639 ACAAGAAAAGATAACTTCATGCACAAT 58.637 29.630 0.00 0.00 35.05 2.71
4872 5319 7.011482 GCCTATCAAGTGGAAGTACAACATTAG 59.989 40.741 0.00 0.00 0.00 1.73
4951 5406 9.010029 CCGATATATGCTAAGGGTACAAAATTT 57.990 33.333 0.00 0.00 0.00 1.82
4960 5415 8.147244 AGTAAATTCCGATATATGCTAAGGGT 57.853 34.615 0.00 0.00 0.00 4.34
5018 5474 9.545611 CAAAGCAATTGTTTATTTTATCCAAGC 57.454 29.630 8.03 0.00 34.16 4.01
5025 5481 9.661187 CAACATGCAAAGCAATTGTTTATTTTA 57.339 25.926 8.03 0.00 43.62 1.52
5079 5537 3.628487 TGTTGTAGGGTAGTTTTGTGTGC 59.372 43.478 0.00 0.00 0.00 4.57
5112 5575 5.964958 ACATACTATGTATGCCATTTGCC 57.035 39.130 15.17 0.00 42.78 4.52
5114 5577 8.071967 CAGTCAACATACTATGTATGCCATTTG 58.928 37.037 15.17 12.33 44.07 2.32
5116 5579 6.205464 GCAGTCAACATACTATGTATGCCATT 59.795 38.462 15.17 3.00 44.07 3.16
5140 5603 0.240945 CCACGGACAATCCACAAAGC 59.759 55.000 0.00 0.00 35.91 3.51
5146 5609 2.234168 TCGTTAATCCACGGACAATCCA 59.766 45.455 0.00 0.00 40.74 3.41
5154 5617 6.467682 CACAATTATTTGTCGTTAATCCACGG 59.532 38.462 0.02 0.00 44.24 4.94
5178 6774 5.304686 ACTTGATAAACAGTTGGTCCTCA 57.695 39.130 0.00 0.00 0.00 3.86
5221 6817 6.323482 CACAATTGATATCCACATAACCCCAA 59.677 38.462 13.59 0.00 0.00 4.12
5223 6819 6.016276 GTCACAATTGATATCCACATAACCCC 60.016 42.308 13.59 0.00 33.11 4.95
5224 6820 6.293407 CGTCACAATTGATATCCACATAACCC 60.293 42.308 13.59 0.00 33.11 4.11
5249 6846 3.751518 TCTTGAAAAGTTGGAGGTAGGC 58.248 45.455 0.00 0.00 46.34 3.93
5304 8235 9.053840 GTAACCCTAGATTAATCAAAAGCCTAC 57.946 37.037 17.56 6.91 0.00 3.18
5340 8272 3.582780 CTCTTGTTAGTACGGTTGTCCC 58.417 50.000 0.00 0.00 0.00 4.46
5419 8352 5.887754 AGTGGCTAAGGTGGATTCTTTTTA 58.112 37.500 0.00 0.00 0.00 1.52
5425 8358 3.451178 TGTAGAGTGGCTAAGGTGGATTC 59.549 47.826 0.00 0.00 0.00 2.52
5466 8399 4.101114 ACACTGGTACTGGATATGTGGAA 58.899 43.478 0.00 0.00 0.00 3.53
5467 8400 3.719871 ACACTGGTACTGGATATGTGGA 58.280 45.455 0.00 0.00 0.00 4.02
5469 8402 6.655003 AGAAAAACACTGGTACTGGATATGTG 59.345 38.462 0.00 0.00 0.00 3.21
5478 8411 4.141642 ACCGGTTAGAAAAACACTGGTACT 60.142 41.667 0.00 0.00 46.52 2.73
5485 8418 5.296748 TGGTAGTACCGGTTAGAAAAACAC 58.703 41.667 15.04 0.15 42.58 3.32
5486 8419 5.543507 TGGTAGTACCGGTTAGAAAAACA 57.456 39.130 15.04 0.00 42.58 2.83
5489 8422 4.506758 GCATGGTAGTACCGGTTAGAAAA 58.493 43.478 15.04 0.00 42.58 2.29
5494 8428 1.122227 GGGCATGGTAGTACCGGTTA 58.878 55.000 15.04 0.00 42.58 2.85
5526 8460 7.407393 AACTAGGTTTGCTAGGTAGAGTTAG 57.593 40.000 0.00 0.00 0.00 2.34
5531 8465 6.161381 CGAAAAACTAGGTTTGCTAGGTAGA 58.839 40.000 6.51 0.00 35.80 2.59
5537 8471 5.857268 ACCTACGAAAAACTAGGTTTGCTA 58.143 37.500 6.51 0.00 39.93 3.49
5539 8473 4.512571 TGACCTACGAAAAACTAGGTTTGC 59.487 41.667 6.51 3.40 42.46 3.68
5543 8477 5.059161 GGTTTGACCTACGAAAAACTAGGT 58.941 41.667 0.09 0.09 44.65 3.08
5556 8490 9.747898 AAAAATGATAGTATGTGGTTTGACCTA 57.252 29.630 0.00 0.00 39.58 3.08
5572 8506 6.127925 TGCCAGTGCTAGAACAAAAATGATAG 60.128 38.462 3.00 0.00 38.71 2.08
5573 8507 5.709631 TGCCAGTGCTAGAACAAAAATGATA 59.290 36.000 3.00 0.00 38.71 2.15
5574 8508 4.523943 TGCCAGTGCTAGAACAAAAATGAT 59.476 37.500 3.00 0.00 38.71 2.45
5589 8523 1.570813 GAAACAAGGTTTGCCAGTGC 58.429 50.000 0.00 0.00 37.19 4.40
5590 8524 1.756538 AGGAAACAAGGTTTGCCAGTG 59.243 47.619 9.30 0.00 37.19 3.66
5592 8526 3.118811 TCAAAGGAAACAAGGTTTGCCAG 60.119 43.478 9.30 1.66 37.19 4.85
5599 8533 6.560003 AAAGGATTTCAAAGGAAACAAGGT 57.440 33.333 0.00 0.00 45.22 3.50
5650 8584 1.342819 CCAAAGTGCCGGGAAAAATGA 59.657 47.619 2.18 0.00 0.00 2.57
5660 8595 2.153366 AAAAATGCTCCAAAGTGCCG 57.847 45.000 0.00 0.00 0.00 5.69
5662 8597 5.558844 GCAAACTAAAAATGCTCCAAAGTGC 60.559 40.000 0.00 0.00 37.12 4.40
5663 8598 5.754890 AGCAAACTAAAAATGCTCCAAAGTG 59.245 36.000 0.00 0.00 46.98 3.16
5664 8599 5.917462 AGCAAACTAAAAATGCTCCAAAGT 58.083 33.333 0.00 0.00 46.98 2.66
5680 8615 8.743085 ATTGTGACATGATATAGAAGCAAACT 57.257 30.769 0.00 0.00 0.00 2.66
5692 8627 4.202212 CCGGACCTGTATTGTGACATGATA 60.202 45.833 0.00 0.00 0.00 2.15
5693 8628 3.432186 CCGGACCTGTATTGTGACATGAT 60.432 47.826 0.00 0.00 0.00 2.45
5694 8629 2.093711 CCGGACCTGTATTGTGACATGA 60.094 50.000 0.00 0.00 0.00 3.07
5697 8632 1.344065 ACCGGACCTGTATTGTGACA 58.656 50.000 9.46 0.00 0.00 3.58
5704 8639 3.830121 CTTAGGACTACCGGACCTGTAT 58.170 50.000 9.46 0.00 40.15 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.