Multiple sequence alignment - TraesCS7D01G519600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G519600 chr7D 100.000 3278 0 0 1 3278 617524142 617527419 0.000000e+00 6054.0
1 TraesCS7D01G519600 chr7D 83.936 249 34 4 1 245 602270501 602270747 1.970000e-57 233.0
2 TraesCS7D01G519600 chr7D 97.222 36 1 0 2220 2255 28594276 28594241 9.820000e-06 62.1
3 TraesCS7D01G519600 chr7D 97.222 36 1 0 2220 2255 28652247 28652282 9.820000e-06 62.1
4 TraesCS7D01G519600 chr7B 95.099 1775 70 9 434 2200 711746931 711748696 0.000000e+00 2780.0
5 TraesCS7D01G519600 chr7B 96.092 435 17 0 1 435 711746173 711746607 0.000000e+00 710.0
6 TraesCS7D01G519600 chr7B 100.000 35 0 0 2219 2253 745246130 745246096 7.590000e-07 65.8
7 TraesCS7D01G519600 chr7A 92.637 1494 90 12 908 2382 711293011 711294503 0.000000e+00 2132.0
8 TraesCS7D01G519600 chr7A 93.538 913 37 7 2383 3278 47823920 47824827 0.000000e+00 1339.0
9 TraesCS7D01G519600 chr7A 91.785 913 54 4 2382 3278 332644499 332645406 0.000000e+00 1251.0
10 TraesCS7D01G519600 chr7A 89.844 640 58 7 757 1396 711210055 711210687 0.000000e+00 815.0
11 TraesCS7D01G519600 chr7A 87.565 386 43 4 1776 2160 711210749 711211130 3.000000e-120 442.0
12 TraesCS7D01G519600 chr7A 91.617 167 11 2 711 876 711292848 711293012 9.150000e-56 228.0
13 TraesCS7D01G519600 chr7A 89.697 165 17 0 296 460 711291905 711292069 9.220000e-51 211.0
14 TraesCS7D01G519600 chr7A 88.112 143 16 1 463 605 711291954 711292095 5.630000e-38 169.0
15 TraesCS7D01G519600 chr7A 92.035 113 6 2 603 712 711292472 711292584 4.380000e-34 156.0
16 TraesCS7D01G519600 chr7A 87.209 86 9 2 2168 2252 560588275 560588191 2.690000e-16 97.1
17 TraesCS7D01G519600 chr7A 87.037 54 5 2 2218 2270 97262221 97262273 3.530000e-05 60.2
18 TraesCS7D01G519600 chr1A 95.290 913 25 4 2382 3278 567959234 567958324 0.000000e+00 1432.0
19 TraesCS7D01G519600 chr1A 88.172 93 9 2 2165 2257 577063177 577063267 3.460000e-20 110.0
20 TraesCS7D01G519600 chr1A 82.955 88 15 0 2168 2255 566679875 566679962 2.710000e-11 80.5
21 TraesCS7D01G519600 chr4D 95.275 910 29 3 2373 3278 36561625 36560726 0.000000e+00 1430.0
22 TraesCS7D01G519600 chr6D 95.333 900 38 2 2382 3278 82906270 82907168 0.000000e+00 1426.0
23 TraesCS7D01G519600 chr6D 94.530 914 26 4 2381 3278 100358865 100359770 0.000000e+00 1389.0
24 TraesCS7D01G519600 chr6D 88.934 244 26 1 1 244 212317759 212318001 1.910000e-77 300.0
25 TraesCS7D01G519600 chr6D 88.889 225 22 3 21 244 20764928 20764706 1.160000e-69 274.0
26 TraesCS7D01G519600 chr6D 82.418 91 3 5 2162 2252 157373828 157373751 2.110000e-07 67.6
27 TraesCS7D01G519600 chr2D 94.426 915 30 5 2382 3278 645194647 645195558 0.000000e+00 1387.0
28 TraesCS7D01G519600 chr2D 97.571 494 12 0 2785 3278 576925047 576924554 0.000000e+00 846.0
29 TraesCS7D01G519600 chr1D 93.886 916 34 6 2381 3278 468090028 468089117 0.000000e+00 1362.0
30 TraesCS7D01G519600 chr1D 93.647 913 25 4 2382 3278 490432738 490433633 0.000000e+00 1334.0
31 TraesCS7D01G519600 chr1D 82.022 89 15 1 2168 2256 375217891 375217978 1.260000e-09 75.0
32 TraesCS7D01G519600 chr6A 93.217 914 48 10 2378 3278 575493456 575494368 0.000000e+00 1332.0
33 TraesCS7D01G519600 chr5D 93.209 913 37 5 2382 3278 523330171 523329268 0.000000e+00 1319.0
34 TraesCS7D01G519600 chr5D 85.057 87 13 0 2167 2253 521112359 521112445 4.510000e-14 89.8
35 TraesCS7D01G519600 chr5D 94.737 38 2 0 2219 2256 557035197 557035160 3.530000e-05 60.2
36 TraesCS7D01G519600 chr5A 93.115 915 40 7 2381 3278 580202562 580203470 0.000000e+00 1319.0
37 TraesCS7D01G519600 chr6B 86.066 244 25 2 1 244 76773726 76773492 1.510000e-63 254.0
38 TraesCS7D01G519600 chr3B 84.064 251 33 7 4 252 807003388 807003143 5.470000e-58 235.0
39 TraesCS7D01G519600 chr3B 83.465 254 29 11 7 252 625700995 625700747 1.180000e-54 224.0
40 TraesCS7D01G519600 chr4A 84.146 246 34 5 1 244 2562623 2562865 1.970000e-57 233.0
41 TraesCS7D01G519600 chr4A 83.539 243 37 3 3 244 656931196 656930956 1.180000e-54 224.0
42 TraesCS7D01G519600 chr4A 93.023 43 2 1 2214 2256 684212514 684212473 9.820000e-06 62.1
43 TraesCS7D01G519600 chr4A 91.304 46 1 2 2212 2257 36371265 36371307 3.530000e-05 60.2
44 TraesCS7D01G519600 chr3A 85.263 95 12 1 2168 2260 54282461 54282555 2.690000e-16 97.1
45 TraesCS7D01G519600 chr3A 83.673 98 12 3 2162 2255 623939641 623939544 4.510000e-14 89.8
46 TraesCS7D01G519600 chr3A 83.146 89 14 1 2168 2256 519392713 519392800 2.710000e-11 80.5
47 TraesCS7D01G519600 chr3D 81.915 94 13 4 2166 2256 340417721 340417629 3.510000e-10 76.8
48 TraesCS7D01G519600 chr1B 83.544 79 13 0 2167 2245 349564636 349564714 1.260000e-09 75.0
49 TraesCS7D01G519600 chr2B 83.544 79 12 1 2168 2246 508407978 508407901 4.540000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G519600 chr7D 617524142 617527419 3277 False 6054.0 6054 100.0000 1 3278 1 chr7D.!!$F3 3277
1 TraesCS7D01G519600 chr7B 711746173 711748696 2523 False 1745.0 2780 95.5955 1 2200 2 chr7B.!!$F1 2199
2 TraesCS7D01G519600 chr7A 47823920 47824827 907 False 1339.0 1339 93.5380 2383 3278 1 chr7A.!!$F1 895
3 TraesCS7D01G519600 chr7A 332644499 332645406 907 False 1251.0 1251 91.7850 2382 3278 1 chr7A.!!$F3 896
4 TraesCS7D01G519600 chr7A 711210055 711211130 1075 False 628.5 815 88.7045 757 2160 2 chr7A.!!$F4 1403
5 TraesCS7D01G519600 chr7A 711291905 711294503 2598 False 579.2 2132 90.8196 296 2382 5 chr7A.!!$F5 2086
6 TraesCS7D01G519600 chr1A 567958324 567959234 910 True 1432.0 1432 95.2900 2382 3278 1 chr1A.!!$R1 896
7 TraesCS7D01G519600 chr4D 36560726 36561625 899 True 1430.0 1430 95.2750 2373 3278 1 chr4D.!!$R1 905
8 TraesCS7D01G519600 chr6D 82906270 82907168 898 False 1426.0 1426 95.3330 2382 3278 1 chr6D.!!$F1 896
9 TraesCS7D01G519600 chr6D 100358865 100359770 905 False 1389.0 1389 94.5300 2381 3278 1 chr6D.!!$F2 897
10 TraesCS7D01G519600 chr2D 645194647 645195558 911 False 1387.0 1387 94.4260 2382 3278 1 chr2D.!!$F1 896
11 TraesCS7D01G519600 chr1D 468089117 468090028 911 True 1362.0 1362 93.8860 2381 3278 1 chr1D.!!$R1 897
12 TraesCS7D01G519600 chr1D 490432738 490433633 895 False 1334.0 1334 93.6470 2382 3278 1 chr1D.!!$F2 896
13 TraesCS7D01G519600 chr6A 575493456 575494368 912 False 1332.0 1332 93.2170 2378 3278 1 chr6A.!!$F1 900
14 TraesCS7D01G519600 chr5D 523329268 523330171 903 True 1319.0 1319 93.2090 2382 3278 1 chr5D.!!$R1 896
15 TraesCS7D01G519600 chr5A 580202562 580203470 908 False 1319.0 1319 93.1150 2381 3278 1 chr5A.!!$F1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 898 0.031857 AGAGCCGCGAGATCAGATTG 59.968 55.0 8.23 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 3330 0.17668 CAAGATCGGTCTCCCACTGG 59.823 60.0 0.0 0.0 32.15 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 6.473778 CGTTTGTGTTGTGGTTGAATATTTGA 59.526 34.615 0.00 0.00 0.00 2.69
165 166 6.089820 GTGGTTGAATATTTGAGTGCAATGTG 59.910 38.462 0.00 0.00 33.25 3.21
171 172 7.710044 TGAATATTTGAGTGCAATGTGTTTGTT 59.290 29.630 0.00 0.00 37.65 2.83
180 181 2.755836 ATGTGTTTGTTCGTGTGAGC 57.244 45.000 0.00 0.00 0.00 4.26
245 246 1.806623 GCACGGGCATTCTACTAGTGG 60.807 57.143 3.77 1.87 40.72 4.00
277 278 4.099633 AGATCAGATCCTTCAAGGTCACA 58.900 43.478 2.50 0.00 36.53 3.58
288 289 1.065126 CAAGGTCACATCCTTCCCTCC 60.065 57.143 0.00 0.00 44.87 4.30
320 321 5.191323 AGAGATCACATCCTTCAAGGTCAAT 59.809 40.000 2.50 0.00 36.53 2.57
351 352 2.040412 CCTACTGGCTCCTCTTTTTGGT 59.960 50.000 0.00 0.00 0.00 3.67
395 396 0.970640 ATGCAGCAAAATCAGTGCCA 59.029 45.000 0.00 0.00 43.27 4.92
435 436 9.950680 AATCACCATTTAATGCTACGAAAATAG 57.049 29.630 0.00 0.00 0.00 1.73
483 809 4.513198 TTTTTGAGGGAAATTAGCCACG 57.487 40.909 0.33 0.00 0.00 4.94
559 885 6.592798 TTTAATGGTACGAAAATAGAGCCG 57.407 37.500 0.00 0.00 0.00 5.52
572 898 0.031857 AGAGCCGCGAGATCAGATTG 59.968 55.000 8.23 0.00 0.00 2.67
649 1355 3.481453 AGATCGGATCAGACGAAGATCA 58.519 45.455 19.47 1.11 44.20 2.92
654 1360 3.251972 CGGATCAGACGAAGATCAGATCA 59.748 47.826 13.14 0.00 41.20 2.92
985 1968 1.208844 TAAGAACCCCCATGGCCGAA 61.209 55.000 6.09 0.00 37.83 4.30
1061 2044 3.001939 CCTGTTTGTCGTTCTACACCAAC 59.998 47.826 0.00 0.00 0.00 3.77
1079 2062 3.486383 CAACTAACCATGGTGACCACTT 58.514 45.455 20.60 2.72 35.80 3.16
1168 2151 1.079819 CACCATGTCGTTCGCCTCT 60.080 57.895 0.00 0.00 0.00 3.69
1372 2355 1.338769 GCCCTCAATAACGACCACAGT 60.339 52.381 0.00 0.00 0.00 3.55
1376 2359 4.142026 CCCTCAATAACGACCACAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
1400 2383 0.304705 CTACATTCCGATGGCGCAAC 59.695 55.000 10.83 0.00 37.60 4.17
1571 2554 1.179152 TTACAAGATCGAGCACGGGA 58.821 50.000 2.38 0.00 40.21 5.14
1667 2650 2.936553 GCCAAGGCATTCCAAACCATTC 60.937 50.000 6.14 0.00 41.49 2.67
1687 2670 0.622136 AGCTTGGTGATGGCATCTCA 59.378 50.000 26.49 20.76 0.00 3.27
1692 2675 1.210234 TGGTGATGGCATCTCACGATT 59.790 47.619 26.49 0.00 43.16 3.34
1909 2892 1.066143 CCTTGCAATACCACTCTCGGT 60.066 52.381 0.00 0.00 43.46 4.69
1948 2931 2.044758 GGGTATGGAACTACCGGACAT 58.955 52.381 9.46 5.15 41.85 3.06
2002 2985 5.121221 ACTTTTGGCTCCTCAAAAATACG 57.879 39.130 0.00 0.00 43.35 3.06
2011 2994 3.142951 CCTCAAAAATACGTGGTCCACA 58.857 45.455 21.91 3.52 33.40 4.17
2026 3009 2.925170 ACAGCGTGGGGAGAAGCT 60.925 61.111 0.00 0.00 41.07 3.74
2083 3066 1.003182 TGGGGTCTGCGGGGTAATA 59.997 57.895 0.00 0.00 0.00 0.98
2174 3164 4.929781 ACGAGCTTAAATAACTACTCCCG 58.070 43.478 0.00 0.00 0.00 5.14
2200 3190 7.386848 GCAGTCCCATAATATAAGAGCGTTTTA 59.613 37.037 0.00 0.00 0.00 1.52
2201 3191 9.268268 CAGTCCCATAATATAAGAGCGTTTTAA 57.732 33.333 0.00 0.00 0.00 1.52
2227 3217 6.037830 ACATTAGTGTAGTGACAAAAACGCTT 59.962 34.615 4.94 0.00 37.31 4.68
2246 3236 6.518493 ACGCTTTTATATTATGGGACGAAGA 58.482 36.000 0.00 0.00 0.00 2.87
2293 3284 7.003402 TGGAATAAATTAAAGCAAGCCACTT 57.997 32.000 0.00 0.00 0.00 3.16
2338 3330 9.202273 CAGAATATAAGTTGTAGCCAGAGATTC 57.798 37.037 0.00 0.00 0.00 2.52
2365 3358 1.805945 GACCGATCTTGTTCGCGCT 60.806 57.895 5.56 0.00 37.80 5.92
2368 3361 1.209128 CCGATCTTGTTCGCGCTAAT 58.791 50.000 5.56 0.00 37.80 1.73
2393 3386 0.820891 CATGAGCGGGCCAATAGCTT 60.821 55.000 4.39 0.00 41.84 3.74
2444 3437 2.063266 GAGTGCGACGTTGTTGGAATA 58.937 47.619 4.37 0.00 0.00 1.75
2464 3457 1.361668 AATGGCTGTGATGCGACGTC 61.362 55.000 5.18 5.18 0.00 4.34
2476 3469 2.683968 TGCGACGTCTTAGAAGCAAAT 58.316 42.857 14.70 0.00 0.00 2.32
2477 3470 2.411748 TGCGACGTCTTAGAAGCAAATG 59.588 45.455 14.70 0.00 0.00 2.32
2537 3530 4.563140 TGAAAAATACGAGGGGTTAGCT 57.437 40.909 0.00 0.00 0.00 3.32
2564 3557 0.457035 TTATGACACGCGGGACCTAC 59.543 55.000 19.19 0.97 0.00 3.18
2993 4027 5.429681 TGGTCTAATTTCTCCCGATTTCA 57.570 39.130 0.00 0.00 0.00 2.69
3177 4241 2.625823 CGGCTTGCCGTGGAACAAT 61.626 57.895 24.03 0.00 44.16 2.71
3217 4282 1.159713 GCCGATCCGATGATGCACAA 61.160 55.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.143673 TCATCCTCTCAATCTATTATCCCTTG 57.856 38.462 0.00 0.00 0.00 3.61
155 156 2.163412 ACACGAACAAACACATTGCACT 59.837 40.909 0.00 0.00 43.13 4.40
165 166 4.101942 TCATTTTGCTCACACGAACAAAC 58.898 39.130 0.00 0.00 37.04 2.93
171 172 4.754618 ACAATACTCATTTTGCTCACACGA 59.245 37.500 0.00 0.00 0.00 4.35
261 262 3.922171 AGGATGTGACCTTGAAGGATC 57.078 47.619 19.83 10.03 37.67 3.36
320 321 0.251653 AGCCAGTAGGAGTCGAACCA 60.252 55.000 11.59 0.00 36.89 3.67
351 352 5.813157 TCAATCGTAATCGTGGCTAATTTCA 59.187 36.000 0.00 0.00 38.33 2.69
435 436 2.018866 CAATCGGATCTCGCGGCTC 61.019 63.158 6.13 0.02 39.05 4.70
468 794 2.640184 GTAAGCGTGGCTAATTTCCCT 58.360 47.619 0.00 0.00 38.25 4.20
483 809 6.253298 TGATTTTGCTGCATTAAATCGTAAGC 59.747 34.615 23.93 9.55 39.80 3.09
543 869 1.779724 CTCGCGGCTCTATTTTCGTAC 59.220 52.381 6.13 0.00 0.00 3.67
551 877 1.832883 ATCTGATCTCGCGGCTCTAT 58.167 50.000 6.13 0.00 0.00 1.98
559 885 7.038048 TCCATTATATCACAATCTGATCTCGC 58.962 38.462 0.00 0.00 40.38 5.03
572 898 7.365741 CCACTGATTTTGCTCCATTATATCAC 58.634 38.462 0.00 0.00 0.00 3.06
649 1355 6.757897 TTTAGCAACAAATCCGAATGATCT 57.242 33.333 0.00 0.00 31.61 2.75
754 1727 6.130569 ACCCTGTGTACATCAAGGTTAAAAA 58.869 36.000 16.59 0.00 0.00 1.94
755 1728 5.697067 ACCCTGTGTACATCAAGGTTAAAA 58.303 37.500 16.59 0.00 0.00 1.52
943 1916 3.706373 GACTGGGAGGCTCGGCAA 61.706 66.667 8.69 0.00 0.00 4.52
985 1968 1.894978 GCACCTCACTTCCTCTCCTCT 60.895 57.143 0.00 0.00 0.00 3.69
1061 2044 2.819608 CCAAAGTGGTCACCATGGTTAG 59.180 50.000 16.84 5.06 35.28 2.34
1071 2054 0.033504 GAGTCTCGCCAAAGTGGTCA 59.966 55.000 0.00 0.00 40.46 4.02
1079 2062 2.973899 GAGCAGGAGTCTCGCCAA 59.026 61.111 0.00 0.00 0.00 4.52
1168 2151 1.674651 CTCCGACGTGACCTCCTCA 60.675 63.158 0.00 0.00 0.00 3.86
1274 2257 3.671411 ACTCTGCGCGAAGACGGT 61.671 61.111 14.32 8.08 40.15 4.83
1372 2355 3.306294 CCATCGGAATGTAGCAGCTGATA 60.306 47.826 20.43 14.08 0.00 2.15
1376 2359 0.533755 GCCATCGGAATGTAGCAGCT 60.534 55.000 0.00 0.00 0.00 4.24
1627 2610 3.897122 GGGGTGCCACCTCCACAA 61.897 66.667 14.71 0.00 38.64 3.33
1667 2650 1.022735 GAGATGCCATCACCAAGCTG 58.977 55.000 7.56 0.00 0.00 4.24
1891 2874 1.621317 TGACCGAGAGTGGTATTGCAA 59.379 47.619 0.00 0.00 44.01 4.08
1909 2892 2.525124 AACCAGGGTCATGGCGTGA 61.525 57.895 5.03 5.03 44.80 4.35
2011 2994 3.710722 CCAGCTTCTCCCCACGCT 61.711 66.667 0.00 0.00 0.00 5.07
2020 3003 0.321122 GCCGCATATAGCCAGCTTCT 60.321 55.000 0.00 0.00 41.38 2.85
2026 3009 2.656646 CGGAGCCGCATATAGCCA 59.343 61.111 0.00 0.00 41.38 4.75
2083 3066 1.828660 CGGATAGGTGGCCTCGAGT 60.829 63.158 12.31 0.00 34.61 4.18
2153 3136 3.734735 GCGGGAGTAGTTATTTAAGCTCG 59.265 47.826 0.00 0.00 0.00 5.03
2174 3164 4.822026 ACGCTCTTATATTATGGGACTGC 58.178 43.478 0.00 0.00 0.00 4.40
2200 3190 6.689669 GCGTTTTTGTCACTACACTAATGTTT 59.310 34.615 0.00 0.00 40.48 2.83
2201 3191 6.037830 AGCGTTTTTGTCACTACACTAATGTT 59.962 34.615 0.00 0.00 40.48 2.71
2208 3198 8.944212 ATATAAAAGCGTTTTTGTCACTACAC 57.056 30.769 18.77 0.00 37.12 2.90
2213 3203 8.803799 CCCATAATATAAAAGCGTTTTTGTCAC 58.196 33.333 18.77 0.00 37.12 3.67
2227 3217 9.584008 ACTACTCTCTTCGTCCCATAATATAAA 57.416 33.333 0.00 0.00 0.00 1.40
2237 3227 7.171337 CACTAACTATACTACTCTCTTCGTCCC 59.829 44.444 0.00 0.00 0.00 4.46
2269 3259 6.603940 AGTGGCTTGCTTTAATTTATTCCA 57.396 33.333 0.00 0.00 0.00 3.53
2270 3260 7.294676 CAAGTGGCTTGCTTTAATTTATTCC 57.705 36.000 0.00 0.00 34.63 3.01
2293 3284 2.031919 CCCTGCGTACAACCAGCA 59.968 61.111 0.00 0.00 39.25 4.41
2295 3286 2.746277 GCCCCTGCGTACAACCAG 60.746 66.667 0.00 0.00 0.00 4.00
2338 3330 0.176680 CAAGATCGGTCTCCCACTGG 59.823 60.000 0.00 0.00 32.15 4.00
2356 3349 2.673074 GCTACCATTAGCGCGAACA 58.327 52.632 12.10 0.00 41.50 3.18
2365 3358 0.250295 GCCCGCTCATGCTACCATTA 60.250 55.000 0.00 0.00 36.97 1.90
2368 3361 4.175337 GGCCCGCTCATGCTACCA 62.175 66.667 0.00 0.00 36.97 3.25
2393 3386 1.333702 GCATGAAAAACGTCGCACAGA 60.334 47.619 0.00 0.00 0.00 3.41
2444 3437 0.955428 ACGTCGCATCACAGCCATTT 60.955 50.000 0.00 0.00 0.00 2.32
2464 3457 6.932356 TTGGAGCTATCATTTGCTTCTAAG 57.068 37.500 0.00 0.00 39.91 2.18
2476 3469 2.486918 CATGTCGCATTGGAGCTATCA 58.513 47.619 0.00 0.00 0.00 2.15
2477 3470 1.802960 CCATGTCGCATTGGAGCTATC 59.197 52.381 0.00 0.00 34.81 2.08
2523 3516 3.144506 CTCGAATAGCTAACCCCTCGTA 58.855 50.000 0.00 0.00 0.00 3.43
2537 3530 2.542205 CCCGCGTGTCATAACTCGAATA 60.542 50.000 4.92 0.00 43.25 1.75
2564 3557 2.173669 CCCGCATGCGAGTAACTGG 61.174 63.158 39.90 25.90 42.83 4.00
2677 3703 4.847367 GCAATGGAGGGCAGGGGG 62.847 72.222 0.00 0.00 0.00 5.40
2678 3704 3.307089 AAGCAATGGAGGGCAGGGG 62.307 63.158 0.00 0.00 0.00 4.79
2679 3705 2.056223 CAAGCAATGGAGGGCAGGG 61.056 63.158 0.00 0.00 0.00 4.45
2680 3706 2.718073 GCAAGCAATGGAGGGCAGG 61.718 63.158 0.00 0.00 0.00 4.85
2681 3707 2.718073 GGCAAGCAATGGAGGGCAG 61.718 63.158 0.00 0.00 0.00 4.85
2682 3708 2.681064 GGCAAGCAATGGAGGGCA 60.681 61.111 0.00 0.00 0.00 5.36
2933 3967 1.383248 AGATCTAAGCTGCCCCGGT 60.383 57.895 0.00 0.00 0.00 5.28
2943 3977 7.102346 AGATTGGTCAAGAACACAGATCTAAG 58.898 38.462 0.00 0.00 0.00 2.18
3217 4282 4.823442 TCAATTCACACTTCAGTTCTGCAT 59.177 37.500 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.