Multiple sequence alignment - TraesCS7D01G519400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G519400 chr7D 100.000 3440 0 0 1 3440 617379167 617375728 0.000000e+00 6353.0
1 TraesCS7D01G519400 chr7D 89.647 1613 138 16 861 2469 617197160 617198747 0.000000e+00 2026.0
2 TraesCS7D01G519400 chr7D 82.364 516 72 11 2884 3390 634297215 634297720 6.820000e-117 431.0
3 TraesCS7D01G519400 chr7D 99.048 105 1 0 256 360 617378811 617378707 4.530000e-44 189.0
4 TraesCS7D01G519400 chr7D 99.048 105 1 0 357 461 617378912 617378808 4.530000e-44 189.0
5 TraesCS7D01G519400 chr7D 95.000 60 3 0 226 285 617197013 617197072 1.020000e-15 95.3
6 TraesCS7D01G519400 chr7D 100.000 30 0 0 357 386 617197043 617197072 4.800000e-04 56.5
7 TraesCS7D01G519400 chr7B 88.335 2666 247 37 809 3437 711489684 711487046 0.000000e+00 3142.0
8 TraesCS7D01G519400 chr7B 90.063 1741 116 30 863 2580 711475426 711477132 0.000000e+00 2204.0
9 TraesCS7D01G519400 chr7B 81.939 526 68 9 2936 3440 654008888 654009407 1.480000e-113 420.0
10 TraesCS7D01G519400 chr7B 92.655 177 13 0 177 353 711489895 711489719 4.410000e-64 255.0
11 TraesCS7D01G519400 chr7B 93.233 133 9 0 357 489 711489816 711489684 2.710000e-46 196.0
12 TraesCS7D01G519400 chr7B 93.939 99 5 1 226 323 711475252 711475350 7.690000e-32 148.0
13 TraesCS7D01G519400 chr7B 87.313 134 11 3 357 488 711475283 711475412 7.690000e-32 148.0
14 TraesCS7D01G519400 chr7B 88.636 88 9 1 141 228 223175993 223176079 4.700000e-19 106.0
15 TraesCS7D01G519400 chr7A 92.367 1808 130 5 809 2608 711172762 711170955 0.000000e+00 2567.0
16 TraesCS7D01G519400 chr7A 89.913 1497 140 9 972 2461 710959345 710957853 0.000000e+00 1917.0
17 TraesCS7D01G519400 chr7A 91.477 176 13 1 187 360 711172965 711172790 1.230000e-59 241.0
18 TraesCS7D01G519400 chr7A 82.051 273 34 9 556 819 403648012 403648278 5.780000e-53 219.0
19 TraesCS7D01G519400 chr7A 94.815 135 5 1 357 489 711172896 711172762 3.480000e-50 209.0
20 TraesCS7D01G519400 chr7A 89.404 151 15 1 1 150 711173115 711172965 4.530000e-44 189.0
21 TraesCS7D01G519400 chr7A 80.982 163 26 4 2443 2601 710936392 710936231 1.300000e-24 124.0
22 TraesCS7D01G519400 chr7A 81.410 156 24 4 2443 2594 710379958 710379804 4.660000e-24 122.0
23 TraesCS7D01G519400 chr4A 87.782 1285 140 9 1153 2427 599612138 599613415 0.000000e+00 1487.0
24 TraesCS7D01G519400 chr4A 83.385 1294 199 13 1150 2439 24557444 24556163 0.000000e+00 1184.0
25 TraesCS7D01G519400 chr4A 82.625 259 40 4 556 812 253619737 253619482 1.240000e-54 224.0
26 TraesCS7D01G519400 chrUn 87.704 1285 141 9 1153 2427 241849815 241848538 0.000000e+00 1482.0
27 TraesCS7D01G519400 chrUn 85.859 99 10 3 140 236 29722134 29722038 6.070000e-18 102.0
28 TraesCS7D01G519400 chrUn 100.000 31 0 0 902 932 427577804 427577834 1.330000e-04 58.4
29 TraesCS7D01G519400 chrUn 100.000 31 0 0 902 932 460760366 460760336 1.330000e-04 58.4
30 TraesCS7D01G519400 chr4D 83.217 1293 197 18 1150 2436 443206669 443207947 0.000000e+00 1168.0
31 TraesCS7D01G519400 chr4D 82.879 257 36 6 556 807 321119021 321119274 1.240000e-54 224.0
32 TraesCS7D01G519400 chr4D 90.909 88 7 1 141 228 414221107 414221193 2.170000e-22 117.0
33 TraesCS7D01G519400 chr6A 81.229 586 86 10 2829 3395 522643052 522643632 5.240000e-123 451.0
34 TraesCS7D01G519400 chr5D 83.229 477 63 10 2926 3393 235108866 235109334 4.100000e-114 422.0
35 TraesCS7D01G519400 chr4B 81.530 536 71 10 2926 3440 436249365 436248837 1.910000e-112 416.0
36 TraesCS7D01G519400 chr4B 87.368 95 10 2 141 235 90721489 90721581 1.310000e-19 108.0
37 TraesCS7D01G519400 chr1D 82.773 476 66 11 2926 3393 42972825 42973292 8.890000e-111 411.0
38 TraesCS7D01G519400 chr1D 82.946 258 37 4 554 809 37219417 37219669 3.450000e-55 226.0
39 TraesCS7D01G519400 chr3D 82.744 481 61 15 2926 3395 104820796 104821265 3.200000e-110 409.0
40 TraesCS7D01G519400 chr3D 82.101 257 38 6 556 807 22567626 22567879 2.690000e-51 213.0
41 TraesCS7D01G519400 chr2D 82.180 477 73 7 2926 3395 443290070 443289599 1.920000e-107 399.0
42 TraesCS7D01G519400 chr1B 82.540 315 24 5 10 323 667982088 667981804 7.370000e-62 248.0
43 TraesCS7D01G519400 chr1B 97.059 68 2 0 357 424 667981871 667981804 7.800000e-22 115.0
44 TraesCS7D01G519400 chr1B 93.478 46 3 0 2828 2873 374920335 374920380 6.160000e-08 69.4
45 TraesCS7D01G519400 chr6D 82.745 255 38 3 556 807 208295587 208295336 4.470000e-54 222.0
46 TraesCS7D01G519400 chr3A 82.490 257 36 6 556 807 511233700 511233952 2.080000e-52 217.0
47 TraesCS7D01G519400 chr3A 81.853 259 41 3 556 811 180919640 180919385 2.690000e-51 213.0
48 TraesCS7D01G519400 chr2B 82.283 254 39 5 556 806 420447602 420447352 7.480000e-52 215.0
49 TraesCS7D01G519400 chr5A 89.474 95 9 1 141 235 126268440 126268533 6.030000e-23 119.0
50 TraesCS7D01G519400 chr5A 89.773 88 8 1 141 228 645994326 645994240 1.010000e-20 111.0
51 TraesCS7D01G519400 chr2A 89.011 91 7 3 139 228 772380456 772380544 3.630000e-20 110.0
52 TraesCS7D01G519400 chr1A 87.097 93 8 4 136 228 490989736 490989824 6.070000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G519400 chr7D 617375728 617379167 3439 True 2243.666667 6353 99.365333 1 3440 3 chr7D.!!$R1 3439
1 TraesCS7D01G519400 chr7D 617197013 617198747 1734 False 725.933333 2026 94.882333 226 2469 3 chr7D.!!$F2 2243
2 TraesCS7D01G519400 chr7D 634297215 634297720 505 False 431.000000 431 82.364000 2884 3390 1 chr7D.!!$F1 506
3 TraesCS7D01G519400 chr7B 711487046 711489895 2849 True 1197.666667 3142 91.407667 177 3437 3 chr7B.!!$R1 3260
4 TraesCS7D01G519400 chr7B 711475252 711477132 1880 False 833.333333 2204 90.438333 226 2580 3 chr7B.!!$F3 2354
5 TraesCS7D01G519400 chr7B 654008888 654009407 519 False 420.000000 420 81.939000 2936 3440 1 chr7B.!!$F2 504
6 TraesCS7D01G519400 chr7A 710957853 710959345 1492 True 1917.000000 1917 89.913000 972 2461 1 chr7A.!!$R3 1489
7 TraesCS7D01G519400 chr7A 711170955 711173115 2160 True 801.500000 2567 92.015750 1 2608 4 chr7A.!!$R4 2607
8 TraesCS7D01G519400 chr4A 599612138 599613415 1277 False 1487.000000 1487 87.782000 1153 2427 1 chr4A.!!$F1 1274
9 TraesCS7D01G519400 chr4A 24556163 24557444 1281 True 1184.000000 1184 83.385000 1150 2439 1 chr4A.!!$R1 1289
10 TraesCS7D01G519400 chrUn 241848538 241849815 1277 True 1482.000000 1482 87.704000 1153 2427 1 chrUn.!!$R2 1274
11 TraesCS7D01G519400 chr4D 443206669 443207947 1278 False 1168.000000 1168 83.217000 1150 2436 1 chr4D.!!$F3 1286
12 TraesCS7D01G519400 chr6A 522643052 522643632 580 False 451.000000 451 81.229000 2829 3395 1 chr6A.!!$F1 566
13 TraesCS7D01G519400 chr4B 436248837 436249365 528 True 416.000000 416 81.530000 2926 3440 1 chr4B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 448 0.040246 GATGTAGCCTACCGAGTCGC 60.040 60.0 7.12 0.0 0.0 5.19 F
445 457 0.457853 TACCGAGTCGCAACAGCATC 60.458 55.0 7.12 0.0 0.0 3.91 F
1582 1626 0.110823 GAACAAGTACAACCTGCGCG 60.111 55.0 0.00 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1626 0.526096 TTTACGCTACGGATGTCGGC 60.526 55.0 0.0 0.0 44.45 5.54 R
1861 1905 0.638746 CGGTAAGCATTGTCGTCGTC 59.361 55.0 0.0 0.0 0.00 4.20 R
2843 2910 0.039618 AACCATTCCTGACCGGCAAT 59.960 50.0 0.0 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 2.084546 GCGAGGTGCCTATGAAACTTT 58.915 47.619 0.00 0.00 37.76 2.66
37 39 5.858581 GTGCCTATGAAACTTTGTCAATCAC 59.141 40.000 0.00 0.00 0.00 3.06
45 47 5.371115 AACTTTGTCAATCACAATACCCG 57.629 39.130 0.00 0.00 44.77 5.28
61 63 1.352404 CCGTCGACTAAGCCTCTCG 59.648 63.158 14.70 0.00 0.00 4.04
82 84 6.378564 TCTCGGAGGAGCTTATAAAGATATGG 59.621 42.308 4.96 0.00 40.26 2.74
88 90 7.603651 AGGAGCTTATAAAGATATGGTGTACG 58.396 38.462 0.00 0.00 0.00 3.67
94 96 3.603158 AAGATATGGTGTACGTGTGCA 57.397 42.857 0.00 0.00 0.00 4.57
143 145 2.223947 ACATGTGAGCGTCTGTGTTGTA 60.224 45.455 0.00 0.00 0.00 2.41
150 152 1.669211 GCGTCTGTGTTGTACTCCCTC 60.669 57.143 0.00 0.00 0.00 4.30
151 153 1.887198 CGTCTGTGTTGTACTCCCTCT 59.113 52.381 0.00 0.00 0.00 3.69
152 154 3.079578 CGTCTGTGTTGTACTCCCTCTA 58.920 50.000 0.00 0.00 0.00 2.43
153 155 3.695060 CGTCTGTGTTGTACTCCCTCTAT 59.305 47.826 0.00 0.00 0.00 1.98
154 156 4.880120 CGTCTGTGTTGTACTCCCTCTATA 59.120 45.833 0.00 0.00 0.00 1.31
155 157 5.356190 CGTCTGTGTTGTACTCCCTCTATAA 59.644 44.000 0.00 0.00 0.00 0.98
156 158 6.127814 CGTCTGTGTTGTACTCCCTCTATAAA 60.128 42.308 0.00 0.00 0.00 1.40
157 159 7.259161 GTCTGTGTTGTACTCCCTCTATAAAG 58.741 42.308 0.00 0.00 0.00 1.85
158 160 7.122353 GTCTGTGTTGTACTCCCTCTATAAAGA 59.878 40.741 0.00 0.00 0.00 2.52
159 161 7.672660 TCTGTGTTGTACTCCCTCTATAAAGAA 59.327 37.037 0.00 0.00 0.00 2.52
160 162 8.197592 TGTGTTGTACTCCCTCTATAAAGAAA 57.802 34.615 0.00 0.00 0.00 2.52
161 163 8.822805 TGTGTTGTACTCCCTCTATAAAGAAAT 58.177 33.333 0.00 0.00 0.00 2.17
350 362 3.725459 CGCAACAGCATCGCCACA 61.725 61.111 0.00 0.00 0.00 4.17
351 363 2.644418 GCAACAGCATCGCCACAA 59.356 55.556 0.00 0.00 0.00 3.33
352 364 1.443194 GCAACAGCATCGCCACAAG 60.443 57.895 0.00 0.00 0.00 3.16
353 365 1.443194 CAACAGCATCGCCACAAGC 60.443 57.895 0.00 0.00 38.52 4.01
354 366 1.601759 AACAGCATCGCCACAAGCT 60.602 52.632 0.00 0.00 40.39 3.74
355 367 2.483745 CAGCATCGCCACAAGCTG 59.516 61.111 0.00 0.00 46.98 4.24
356 368 2.348620 AGCATCGCCACAAGCTGA 59.651 55.556 0.00 0.00 40.39 4.26
357 369 1.302752 AGCATCGCCACAAGCTGAA 60.303 52.632 0.00 0.00 40.39 3.02
358 370 0.890542 AGCATCGCCACAAGCTGAAA 60.891 50.000 0.00 0.00 40.39 2.69
359 371 0.455633 GCATCGCCACAAGCTGAAAG 60.456 55.000 0.00 0.00 40.39 2.62
360 372 1.159285 CATCGCCACAAGCTGAAAGA 58.841 50.000 0.00 0.00 40.39 2.52
361 373 1.129998 CATCGCCACAAGCTGAAAGAG 59.870 52.381 0.00 0.00 40.39 2.85
371 383 2.336554 GCTGAAAGAGCGCAAAATCA 57.663 45.000 11.47 8.00 38.15 2.57
372 384 2.664916 GCTGAAAGAGCGCAAAATCAA 58.335 42.857 11.47 0.00 38.15 2.57
373 385 3.248266 GCTGAAAGAGCGCAAAATCAAT 58.752 40.909 11.47 0.00 38.15 2.57
374 386 3.302699 GCTGAAAGAGCGCAAAATCAATC 59.697 43.478 11.47 1.43 38.15 2.67
375 387 4.478699 CTGAAAGAGCGCAAAATCAATCA 58.521 39.130 11.47 6.10 34.07 2.57
376 388 5.063180 TGAAAGAGCGCAAAATCAATCAT 57.937 34.783 11.47 0.00 0.00 2.45
377 389 5.472148 TGAAAGAGCGCAAAATCAATCATT 58.528 33.333 11.47 0.00 0.00 2.57
378 390 5.346551 TGAAAGAGCGCAAAATCAATCATTG 59.653 36.000 11.47 0.00 0.00 2.82
379 391 3.184541 AGAGCGCAAAATCAATCATTGC 58.815 40.909 11.47 0.00 44.50 3.56
380 392 2.273557 AGCGCAAAATCAATCATTGCC 58.726 42.857 11.47 0.00 45.00 4.52
381 393 2.093869 AGCGCAAAATCAATCATTGCCT 60.094 40.909 11.47 0.77 45.00 4.75
382 394 2.283351 GCGCAAAATCAATCATTGCCTC 59.717 45.455 0.30 0.00 45.00 4.70
383 395 3.777478 CGCAAAATCAATCATTGCCTCT 58.223 40.909 4.35 0.00 45.00 3.69
384 396 3.550275 CGCAAAATCAATCATTGCCTCTG 59.450 43.478 4.35 0.00 45.00 3.35
385 397 4.501071 GCAAAATCAATCATTGCCTCTGT 58.499 39.130 0.00 0.00 42.70 3.41
386 398 4.933400 GCAAAATCAATCATTGCCTCTGTT 59.067 37.500 0.00 0.00 42.70 3.16
387 399 5.410439 GCAAAATCAATCATTGCCTCTGTTT 59.590 36.000 0.00 0.00 42.70 2.83
388 400 6.072893 GCAAAATCAATCATTGCCTCTGTTTT 60.073 34.615 0.00 0.00 42.70 2.43
389 401 7.515643 CAAAATCAATCATTGCCTCTGTTTTC 58.484 34.615 0.00 0.00 0.00 2.29
390 402 4.789012 TCAATCATTGCCTCTGTTTTCC 57.211 40.909 0.00 0.00 0.00 3.13
391 403 4.410099 TCAATCATTGCCTCTGTTTTCCT 58.590 39.130 0.00 0.00 0.00 3.36
392 404 4.219070 TCAATCATTGCCTCTGTTTTCCTG 59.781 41.667 0.00 0.00 0.00 3.86
393 405 3.228188 TCATTGCCTCTGTTTTCCTGT 57.772 42.857 0.00 0.00 0.00 4.00
394 406 3.565307 TCATTGCCTCTGTTTTCCTGTT 58.435 40.909 0.00 0.00 0.00 3.16
395 407 3.569701 TCATTGCCTCTGTTTTCCTGTTC 59.430 43.478 0.00 0.00 0.00 3.18
396 408 1.593196 TGCCTCTGTTTTCCTGTTCG 58.407 50.000 0.00 0.00 0.00 3.95
397 409 1.140052 TGCCTCTGTTTTCCTGTTCGA 59.860 47.619 0.00 0.00 0.00 3.71
398 410 1.531578 GCCTCTGTTTTCCTGTTCGAC 59.468 52.381 0.00 0.00 0.00 4.20
399 411 2.833794 CCTCTGTTTTCCTGTTCGACA 58.166 47.619 0.00 0.00 0.00 4.35
400 412 3.403038 CCTCTGTTTTCCTGTTCGACAT 58.597 45.455 0.00 0.00 0.00 3.06
401 413 3.815401 CCTCTGTTTTCCTGTTCGACATT 59.185 43.478 0.00 0.00 0.00 2.71
402 414 4.319766 CCTCTGTTTTCCTGTTCGACATTG 60.320 45.833 0.00 0.00 0.00 2.82
403 415 4.447290 TCTGTTTTCCTGTTCGACATTGA 58.553 39.130 0.00 0.00 0.00 2.57
404 416 4.511454 TCTGTTTTCCTGTTCGACATTGAG 59.489 41.667 0.00 0.00 0.00 3.02
405 417 4.447290 TGTTTTCCTGTTCGACATTGAGA 58.553 39.130 0.00 0.00 0.00 3.27
406 418 4.511454 TGTTTTCCTGTTCGACATTGAGAG 59.489 41.667 0.00 0.00 0.00 3.20
407 419 4.336889 TTTCCTGTTCGACATTGAGAGT 57.663 40.909 0.00 0.00 0.00 3.24
408 420 4.336889 TTCCTGTTCGACATTGAGAGTT 57.663 40.909 0.00 0.00 0.00 3.01
409 421 4.336889 TCCTGTTCGACATTGAGAGTTT 57.663 40.909 0.00 0.00 0.00 2.66
410 422 5.462530 TCCTGTTCGACATTGAGAGTTTA 57.537 39.130 0.00 0.00 0.00 2.01
411 423 5.849510 TCCTGTTCGACATTGAGAGTTTAA 58.150 37.500 0.00 0.00 0.00 1.52
412 424 6.464222 TCCTGTTCGACATTGAGAGTTTAAT 58.536 36.000 0.00 0.00 0.00 1.40
413 425 6.934645 TCCTGTTCGACATTGAGAGTTTAATT 59.065 34.615 0.00 0.00 0.00 1.40
414 426 8.092068 TCCTGTTCGACATTGAGAGTTTAATTA 58.908 33.333 0.00 0.00 0.00 1.40
415 427 8.717821 CCTGTTCGACATTGAGAGTTTAATTAA 58.282 33.333 0.00 0.00 0.00 1.40
426 438 9.959721 TTGAGAGTTTAATTAAAGATGTAGCCT 57.040 29.630 10.92 2.47 0.00 4.58
429 441 9.833917 AGAGTTTAATTAAAGATGTAGCCTACC 57.166 33.333 10.92 0.00 0.00 3.18
430 442 8.658499 AGTTTAATTAAAGATGTAGCCTACCG 57.342 34.615 10.92 0.00 0.00 4.02
431 443 8.480501 AGTTTAATTAAAGATGTAGCCTACCGA 58.519 33.333 10.92 0.00 0.00 4.69
432 444 8.762426 GTTTAATTAAAGATGTAGCCTACCGAG 58.238 37.037 10.92 0.00 0.00 4.63
433 445 6.481434 AATTAAAGATGTAGCCTACCGAGT 57.519 37.500 0.00 0.00 0.00 4.18
434 446 5.511234 TTAAAGATGTAGCCTACCGAGTC 57.489 43.478 0.00 0.00 0.00 3.36
435 447 1.595466 AGATGTAGCCTACCGAGTCG 58.405 55.000 5.29 5.29 0.00 4.18
436 448 0.040246 GATGTAGCCTACCGAGTCGC 60.040 60.000 7.12 0.00 0.00 5.19
437 449 0.750546 ATGTAGCCTACCGAGTCGCA 60.751 55.000 7.12 0.00 0.00 5.10
438 450 0.961857 TGTAGCCTACCGAGTCGCAA 60.962 55.000 7.12 0.00 0.00 4.85
439 451 0.525029 GTAGCCTACCGAGTCGCAAC 60.525 60.000 7.12 0.00 0.00 4.17
440 452 0.961857 TAGCCTACCGAGTCGCAACA 60.962 55.000 7.12 0.00 0.00 3.33
441 453 1.805945 GCCTACCGAGTCGCAACAG 60.806 63.158 7.12 0.66 0.00 3.16
442 454 1.805945 CCTACCGAGTCGCAACAGC 60.806 63.158 7.12 0.00 0.00 4.40
443 455 1.080772 CTACCGAGTCGCAACAGCA 60.081 57.895 7.12 0.00 0.00 4.41
444 456 0.458543 CTACCGAGTCGCAACAGCAT 60.459 55.000 7.12 0.00 0.00 3.79
445 457 0.457853 TACCGAGTCGCAACAGCATC 60.458 55.000 7.12 0.00 0.00 3.91
446 458 2.691522 CGAGTCGCAACAGCATCG 59.308 61.111 0.00 0.00 0.00 3.84
447 459 2.397252 GAGTCGCAACAGCATCGC 59.603 61.111 0.00 0.00 0.00 4.58
448 460 3.088500 GAGTCGCAACAGCATCGCC 62.089 63.158 0.00 0.00 0.00 5.54
449 461 3.422303 GTCGCAACAGCATCGCCA 61.422 61.111 0.00 0.00 0.00 5.69
450 462 3.422303 TCGCAACAGCATCGCCAC 61.422 61.111 0.00 0.00 0.00 5.01
451 463 3.725459 CGCAACAGCATCGCCACA 61.725 61.111 0.00 0.00 0.00 4.17
490 502 3.745332 CAAGTGATATGCTTGCGTTGA 57.255 42.857 4.34 0.00 37.18 3.18
491 503 3.677601 CAAGTGATATGCTTGCGTTGAG 58.322 45.455 4.34 0.00 37.18 3.02
492 504 3.251479 AGTGATATGCTTGCGTTGAGA 57.749 42.857 0.00 0.00 0.00 3.27
493 505 3.193263 AGTGATATGCTTGCGTTGAGAG 58.807 45.455 0.00 0.00 0.00 3.20
494 506 1.935873 TGATATGCTTGCGTTGAGAGC 59.064 47.619 0.00 0.00 36.95 4.09
502 514 2.741759 TGCGTTGAGAGCAAGTATGA 57.258 45.000 0.00 0.00 42.18 2.15
503 515 3.251479 TGCGTTGAGAGCAAGTATGAT 57.749 42.857 0.00 0.00 42.18 2.45
504 516 4.385358 TGCGTTGAGAGCAAGTATGATA 57.615 40.909 0.00 0.00 42.18 2.15
505 517 4.363138 TGCGTTGAGAGCAAGTATGATAG 58.637 43.478 0.00 0.00 42.18 2.08
506 518 4.142160 TGCGTTGAGAGCAAGTATGATAGT 60.142 41.667 0.00 0.00 42.18 2.12
507 519 4.208047 GCGTTGAGAGCAAGTATGATAGTG 59.792 45.833 0.00 0.00 34.01 2.74
508 520 4.742167 CGTTGAGAGCAAGTATGATAGTGG 59.258 45.833 0.00 0.00 34.01 4.00
509 521 4.944619 TGAGAGCAAGTATGATAGTGGG 57.055 45.455 0.00 0.00 0.00 4.61
510 522 4.290093 TGAGAGCAAGTATGATAGTGGGT 58.710 43.478 0.00 0.00 0.00 4.51
511 523 4.716784 TGAGAGCAAGTATGATAGTGGGTT 59.283 41.667 0.00 0.00 0.00 4.11
512 524 5.897250 TGAGAGCAAGTATGATAGTGGGTTA 59.103 40.000 0.00 0.00 0.00 2.85
513 525 6.554982 TGAGAGCAAGTATGATAGTGGGTTAT 59.445 38.462 0.00 0.00 0.00 1.89
514 526 7.728532 TGAGAGCAAGTATGATAGTGGGTTATA 59.271 37.037 0.00 0.00 0.00 0.98
515 527 8.128322 AGAGCAAGTATGATAGTGGGTTATAG 57.872 38.462 0.00 0.00 0.00 1.31
516 528 6.702329 AGCAAGTATGATAGTGGGTTATAGC 58.298 40.000 0.00 0.00 0.00 2.97
517 529 5.875359 GCAAGTATGATAGTGGGTTATAGCC 59.125 44.000 0.00 0.00 36.00 3.93
526 538 2.853235 GGGTTATAGCCCGCTTACAT 57.147 50.000 9.14 0.00 39.17 2.29
527 539 2.423577 GGGTTATAGCCCGCTTACATG 58.576 52.381 9.14 0.00 39.17 3.21
528 540 2.038033 GGGTTATAGCCCGCTTACATGA 59.962 50.000 9.14 0.00 39.17 3.07
529 541 3.307480 GGGTTATAGCCCGCTTACATGAT 60.307 47.826 9.14 0.00 39.17 2.45
530 542 4.081309 GGGTTATAGCCCGCTTACATGATA 60.081 45.833 9.14 0.00 39.17 2.15
531 543 4.868734 GGTTATAGCCCGCTTACATGATAC 59.131 45.833 0.00 0.00 0.00 2.24
532 544 5.337330 GGTTATAGCCCGCTTACATGATACT 60.337 44.000 0.00 0.00 0.00 2.12
533 545 4.891992 ATAGCCCGCTTACATGATACTT 57.108 40.909 0.00 0.00 0.00 2.24
534 546 3.560636 AGCCCGCTTACATGATACTTT 57.439 42.857 0.00 0.00 0.00 2.66
535 547 3.886123 AGCCCGCTTACATGATACTTTT 58.114 40.909 0.00 0.00 0.00 2.27
536 548 3.627577 AGCCCGCTTACATGATACTTTTG 59.372 43.478 0.00 0.00 0.00 2.44
537 549 3.377172 GCCCGCTTACATGATACTTTTGT 59.623 43.478 0.00 0.00 0.00 2.83
538 550 4.495844 GCCCGCTTACATGATACTTTTGTC 60.496 45.833 0.00 0.00 0.00 3.18
539 551 4.876107 CCCGCTTACATGATACTTTTGTCT 59.124 41.667 0.00 0.00 0.00 3.41
540 552 6.046593 CCCGCTTACATGATACTTTTGTCTA 58.953 40.000 0.00 0.00 0.00 2.59
541 553 6.706270 CCCGCTTACATGATACTTTTGTCTAT 59.294 38.462 0.00 0.00 0.00 1.98
542 554 7.870954 CCCGCTTACATGATACTTTTGTCTATA 59.129 37.037 0.00 0.00 0.00 1.31
543 555 9.424319 CCGCTTACATGATACTTTTGTCTATAT 57.576 33.333 0.00 0.00 0.00 0.86
605 617 6.919775 AAAAGTAAGAGGAGTAAGCTCTCA 57.080 37.500 4.93 0.00 41.38 3.27
606 618 7.489239 AAAAGTAAGAGGAGTAAGCTCTCAT 57.511 36.000 4.93 0.00 41.38 2.90
607 619 6.463995 AAGTAAGAGGAGTAAGCTCTCATG 57.536 41.667 4.93 0.00 41.38 3.07
608 620 5.515106 AGTAAGAGGAGTAAGCTCTCATGT 58.485 41.667 4.93 0.00 41.38 3.21
609 621 6.664714 AGTAAGAGGAGTAAGCTCTCATGTA 58.335 40.000 4.93 0.00 41.38 2.29
610 622 7.120051 AGTAAGAGGAGTAAGCTCTCATGTAA 58.880 38.462 4.93 0.00 41.38 2.41
611 623 6.463995 AAGAGGAGTAAGCTCTCATGTAAG 57.536 41.667 4.93 0.00 41.38 2.34
612 624 5.761205 AGAGGAGTAAGCTCTCATGTAAGA 58.239 41.667 4.93 0.00 41.38 2.10
613 625 5.827797 AGAGGAGTAAGCTCTCATGTAAGAG 59.172 44.000 7.00 7.00 44.69 2.85
624 636 7.880160 CTCTCATGTAAGAGCCTAGCTATAT 57.120 40.000 0.00 0.00 39.88 0.86
625 637 8.972458 CTCTCATGTAAGAGCCTAGCTATATA 57.028 38.462 0.00 0.00 39.88 0.86
626 638 8.740123 TCTCATGTAAGAGCCTAGCTATATAC 57.260 38.462 0.00 0.00 39.88 1.47
627 639 8.329502 TCTCATGTAAGAGCCTAGCTATATACA 58.670 37.037 0.00 9.57 39.88 2.29
628 640 9.130661 CTCATGTAAGAGCCTAGCTATATACAT 57.869 37.037 12.16 12.16 39.88 2.29
639 651 9.832445 GCCTAGCTATATACATATTTTTAGGCA 57.168 33.333 19.71 0.00 39.78 4.75
661 673 9.643693 AGGCAAATACAATAAATGTGAAGAAAG 57.356 29.630 0.00 0.00 43.77 2.62
662 674 9.638239 GGCAAATACAATAAATGTGAAGAAAGA 57.362 29.630 0.00 0.00 43.77 2.52
674 686 9.874205 AAATGTGAAGAAAGAGATAGAGAGAAG 57.126 33.333 0.00 0.00 0.00 2.85
675 687 8.821686 ATGTGAAGAAAGAGATAGAGAGAAGA 57.178 34.615 0.00 0.00 0.00 2.87
676 688 8.821686 TGTGAAGAAAGAGATAGAGAGAAGAT 57.178 34.615 0.00 0.00 0.00 2.40
677 689 9.913310 TGTGAAGAAAGAGATAGAGAGAAGATA 57.087 33.333 0.00 0.00 0.00 1.98
709 721 2.678471 GCTAATGCAATGGCCAACTT 57.322 45.000 10.96 0.00 40.13 2.66
710 722 2.976589 GCTAATGCAATGGCCAACTTT 58.023 42.857 10.96 9.67 40.13 2.66
711 723 4.122143 GCTAATGCAATGGCCAACTTTA 57.878 40.909 10.96 10.30 40.13 1.85
712 724 4.696455 GCTAATGCAATGGCCAACTTTAT 58.304 39.130 10.96 0.00 40.13 1.40
713 725 5.118286 GCTAATGCAATGGCCAACTTTATT 58.882 37.500 10.96 9.99 40.13 1.40
714 726 5.006941 GCTAATGCAATGGCCAACTTTATTG 59.993 40.000 10.96 10.15 40.13 1.90
718 730 4.191033 CAATGGCCAACTTTATTGCTCA 57.809 40.909 10.96 0.00 0.00 4.26
719 731 4.761975 CAATGGCCAACTTTATTGCTCAT 58.238 39.130 10.96 0.00 0.00 2.90
720 732 5.904941 CAATGGCCAACTTTATTGCTCATA 58.095 37.500 10.96 0.00 0.00 2.15
721 733 6.518493 CAATGGCCAACTTTATTGCTCATAT 58.482 36.000 10.96 0.00 0.00 1.78
722 734 6.736110 ATGGCCAACTTTATTGCTCATATT 57.264 33.333 10.96 0.00 0.00 1.28
723 735 7.838079 ATGGCCAACTTTATTGCTCATATTA 57.162 32.000 10.96 0.00 0.00 0.98
724 736 7.038154 TGGCCAACTTTATTGCTCATATTAC 57.962 36.000 0.61 0.00 0.00 1.89
725 737 6.833416 TGGCCAACTTTATTGCTCATATTACT 59.167 34.615 0.61 0.00 0.00 2.24
726 738 7.141363 GGCCAACTTTATTGCTCATATTACTG 58.859 38.462 0.00 0.00 0.00 2.74
727 739 7.201821 GGCCAACTTTATTGCTCATATTACTGT 60.202 37.037 0.00 0.00 0.00 3.55
728 740 8.836413 GCCAACTTTATTGCTCATATTACTGTA 58.164 33.333 0.00 0.00 0.00 2.74
748 760 8.557592 ACTGTATGAGTGCATATTGATAATGG 57.442 34.615 0.00 0.00 39.09 3.16
749 761 7.120285 ACTGTATGAGTGCATATTGATAATGGC 59.880 37.037 0.00 0.00 39.09 4.40
750 762 7.170277 TGTATGAGTGCATATTGATAATGGCT 58.830 34.615 0.00 0.00 39.09 4.75
751 763 8.320617 TGTATGAGTGCATATTGATAATGGCTA 58.679 33.333 0.00 0.00 39.09 3.93
752 764 9.334947 GTATGAGTGCATATTGATAATGGCTAT 57.665 33.333 0.00 0.00 39.09 2.97
754 766 9.910267 ATGAGTGCATATTGATAATGGCTATAA 57.090 29.630 0.00 0.00 31.57 0.98
755 767 9.737844 TGAGTGCATATTGATAATGGCTATAAA 57.262 29.630 0.00 0.00 0.00 1.40
765 777 9.697990 TTGATAATGGCTATAAATGATATGGCA 57.302 29.630 6.22 0.00 33.77 4.92
766 778 9.346005 TGATAATGGCTATAAATGATATGGCAG 57.654 33.333 6.22 0.00 33.77 4.85
767 779 9.347240 GATAATGGCTATAAATGATATGGCAGT 57.653 33.333 6.22 0.00 33.77 4.40
768 780 9.705103 ATAATGGCTATAAATGATATGGCAGTT 57.295 29.630 6.22 0.00 33.77 3.16
769 781 7.636150 ATGGCTATAAATGATATGGCAGTTC 57.364 36.000 6.22 0.00 33.77 3.01
770 782 5.945784 TGGCTATAAATGATATGGCAGTTCC 59.054 40.000 6.22 0.00 33.77 3.62
780 792 3.502164 GGCAGTTCCACATAGCCAT 57.498 52.632 0.00 0.00 44.59 4.40
781 793 1.312815 GGCAGTTCCACATAGCCATC 58.687 55.000 0.00 0.00 44.59 3.51
782 794 1.408683 GGCAGTTCCACATAGCCATCA 60.409 52.381 0.00 0.00 44.59 3.07
783 795 1.945394 GCAGTTCCACATAGCCATCAG 59.055 52.381 0.00 0.00 0.00 2.90
784 796 1.945394 CAGTTCCACATAGCCATCAGC 59.055 52.381 0.00 0.00 44.25 4.26
800 812 6.938542 GCCATCAGCTCGCTATATTATTAAC 58.061 40.000 0.00 0.00 38.99 2.01
801 813 6.018669 GCCATCAGCTCGCTATATTATTAACC 60.019 42.308 0.00 0.00 38.99 2.85
802 814 7.041721 CCATCAGCTCGCTATATTATTAACCA 58.958 38.462 0.00 0.00 0.00 3.67
803 815 7.712639 CCATCAGCTCGCTATATTATTAACCAT 59.287 37.037 0.00 0.00 0.00 3.55
804 816 8.546244 CATCAGCTCGCTATATTATTAACCATG 58.454 37.037 0.00 0.00 0.00 3.66
805 817 6.535150 TCAGCTCGCTATATTATTAACCATGC 59.465 38.462 0.00 0.00 0.00 4.06
806 818 6.536582 CAGCTCGCTATATTATTAACCATGCT 59.463 38.462 0.00 0.00 0.00 3.79
807 819 6.758886 AGCTCGCTATATTATTAACCATGCTC 59.241 38.462 0.00 0.00 0.00 4.26
808 820 6.758886 GCTCGCTATATTATTAACCATGCTCT 59.241 38.462 0.00 0.00 0.00 4.09
884 896 3.377172 ACCGCTGACTACAAATTAATGCC 59.623 43.478 0.00 0.00 0.00 4.40
885 897 3.376859 CCGCTGACTACAAATTAATGCCA 59.623 43.478 0.00 0.00 0.00 4.92
1028 1060 4.678743 GGTCCAGGCCCAACCCAC 62.679 72.222 0.00 0.00 40.58 4.61
1272 1316 2.852714 TCCCCATGGCTTCATTCATT 57.147 45.000 6.09 0.00 0.00 2.57
1397 1441 2.283529 ACCACTTCATCCCGACGCT 61.284 57.895 0.00 0.00 0.00 5.07
1398 1442 1.811266 CCACTTCATCCCGACGCTG 60.811 63.158 0.00 0.00 0.00 5.18
1467 1511 2.124612 TCGGCCATCGACGACCTA 60.125 61.111 2.24 0.00 43.74 3.08
1489 1533 4.003788 CCAAGACCGGTGTCGCCT 62.004 66.667 14.63 0.00 46.51 5.52
1582 1626 0.110823 GAACAAGTACAACCTGCGCG 60.111 55.000 0.00 0.00 0.00 6.86
1583 1627 2.113131 AACAAGTACAACCTGCGCGC 62.113 55.000 27.26 27.26 0.00 6.86
1599 1643 2.717485 GCCGACATCCGTAGCGTA 59.283 61.111 0.00 0.00 36.31 4.42
1950 1994 1.188863 GCAAGAACCTGATGGCCATT 58.811 50.000 21.84 3.38 36.63 3.16
2031 2075 2.427245 GCAGCTCCTCTTCGCCCTA 61.427 63.158 0.00 0.00 0.00 3.53
2112 2156 2.203153 ACGGCGTTCAAGCACCTT 60.203 55.556 6.77 0.00 39.27 3.50
2165 2209 1.897225 GAGCTGCAGAAGAGGCTCCA 61.897 60.000 20.43 0.16 43.51 3.86
2409 2456 1.343075 ACGTCCATCCACAGGTATCCT 60.343 52.381 0.00 0.00 0.00 3.24
2436 2483 2.501223 TTCCCGACGTGCTAAGCCAG 62.501 60.000 0.00 0.00 0.00 4.85
2458 2520 9.490379 GCCAGTAGCTTACACTACATAATAAAT 57.510 33.333 0.00 0.00 44.14 1.40
2464 2526 8.432805 AGCTTACACTACATAATAAATCCAGCT 58.567 33.333 0.00 0.00 0.00 4.24
2496 2558 7.255660 GGTGGTCTAAACATGAACAATAAACCA 60.256 37.037 0.00 0.00 32.52 3.67
2499 2561 8.138712 GGTCTAAACATGAACAATAAACCACAA 58.861 33.333 0.00 0.00 0.00 3.33
2551 2614 3.838120 TCGTTATCTTCTGTGTGCTCAG 58.162 45.455 0.00 0.00 36.85 3.35
2552 2615 3.255888 TCGTTATCTTCTGTGTGCTCAGT 59.744 43.478 0.00 0.00 36.85 3.41
2555 2618 5.287274 CGTTATCTTCTGTGTGCTCAGTTAG 59.713 44.000 0.00 0.00 36.85 2.34
2566 2631 1.933853 GCTCAGTTAGGCCATGTAACG 59.066 52.381 5.01 2.57 35.83 3.18
2587 2652 6.589830 ACGGAATGTCTCTTTTATCATTCG 57.410 37.500 0.00 0.00 43.74 3.34
2609 2674 1.009078 CGCGATGTGTGTGATGGATT 58.991 50.000 0.00 0.00 0.00 3.01
2610 2675 1.267682 CGCGATGTGTGTGATGGATTG 60.268 52.381 0.00 0.00 0.00 2.67
2627 2692 6.907853 TGGATTGTGTTGGATTACAAATGA 57.092 33.333 0.00 0.00 41.58 2.57
2644 2709 6.223120 ACAAATGAGCTTTGACCCAAATAAC 58.777 36.000 3.66 0.00 45.96 1.89
2651 2716 8.087750 TGAGCTTTGACCCAAATAACAAAATAG 58.912 33.333 0.00 0.00 32.70 1.73
2654 2719 7.870445 GCTTTGACCCAAATAACAAAATAGTCA 59.130 33.333 0.00 0.00 32.70 3.41
2655 2720 9.927668 CTTTGACCCAAATAACAAAATAGTCAT 57.072 29.630 0.00 0.00 32.70 3.06
2658 2723 8.310382 TGACCCAAATAACAAAATAGTCATTGG 58.690 33.333 0.00 0.00 35.66 3.16
2689 2754 2.102578 AGGTTCATTTAGGTGCATGCC 58.897 47.619 16.68 6.42 0.00 4.40
2693 2758 4.506758 GTTCATTTAGGTGCATGCCAAAT 58.493 39.130 16.68 12.20 0.00 2.32
2694 2759 4.822685 TCATTTAGGTGCATGCCAAATT 57.177 36.364 16.68 0.00 0.00 1.82
2695 2760 4.505808 TCATTTAGGTGCATGCCAAATTG 58.494 39.130 16.68 10.24 0.00 2.32
2696 2761 4.222366 TCATTTAGGTGCATGCCAAATTGA 59.778 37.500 16.68 12.15 0.00 2.57
2711 2778 6.547880 TGCCAAATTGAGAAGTTTAGTACCAA 59.452 34.615 0.00 0.00 0.00 3.67
2713 2780 8.088365 GCCAAATTGAGAAGTTTAGTACCAAAT 58.912 33.333 0.00 0.00 0.00 2.32
2738 2805 6.906659 TGTTACTCTAGTAAAAGTGAGACCG 58.093 40.000 4.20 0.00 41.58 4.79
2750 2817 6.679327 AAAGTGAGACCGATTTATAAAGGC 57.321 37.500 3.94 0.00 0.00 4.35
2758 2825 5.298347 ACCGATTTATAAAGGCTGCTCTAC 58.702 41.667 3.94 0.00 0.00 2.59
2761 2828 5.934625 CGATTTATAAAGGCTGCTCTACCAT 59.065 40.000 3.94 0.00 0.00 3.55
2764 2831 6.942532 TTATAAAGGCTGCTCTACCATTTG 57.057 37.500 0.00 0.00 0.00 2.32
2765 2832 2.887151 AAGGCTGCTCTACCATTTGT 57.113 45.000 0.00 0.00 0.00 2.83
2766 2833 2.409948 AGGCTGCTCTACCATTTGTC 57.590 50.000 0.00 0.00 0.00 3.18
2769 2836 3.019564 GGCTGCTCTACCATTTGTCATT 58.980 45.455 0.00 0.00 0.00 2.57
2773 2840 4.858850 TGCTCTACCATTTGTCATTGGAT 58.141 39.130 8.86 0.00 36.79 3.41
2779 2846 4.897140 ACCATTTGTCATTGGATGTTTGG 58.103 39.130 8.86 0.00 36.79 3.28
2784 2851 3.164268 TGTCATTGGATGTTTGGGAAGG 58.836 45.455 0.00 0.00 0.00 3.46
2791 2858 2.110578 GATGTTTGGGAAGGGGAATGG 58.889 52.381 0.00 0.00 0.00 3.16
2793 2860 1.266178 GTTTGGGAAGGGGAATGGTG 58.734 55.000 0.00 0.00 0.00 4.17
2800 2867 1.259840 AAGGGGAATGGTGCACATGC 61.260 55.000 20.43 9.26 40.44 4.06
2843 2910 1.007734 CGCGAGCCGAGCCTTATTA 60.008 57.895 0.00 0.00 40.02 0.98
2872 2939 7.201839 GCCGGTCAGGAATGGTTAATTAATTAA 60.202 37.037 15.19 15.19 45.00 1.40
2896 2963 4.508861 GGATTAATTAACGAGCCGCTAACA 59.491 41.667 0.00 0.00 0.00 2.41
2921 2988 1.295792 GCCACTGTTCAAGACGTTGA 58.704 50.000 0.00 0.00 41.13 3.18
2929 2996 2.684001 TCAAGACGTTGAACTGTGGT 57.316 45.000 0.00 0.00 39.85 4.16
2980 3070 4.421131 CCTATATAAGGTGGCTCTGGTCT 58.579 47.826 0.00 0.00 40.94 3.85
2981 3071 5.580998 CCTATATAAGGTGGCTCTGGTCTA 58.419 45.833 0.00 0.00 40.94 2.59
2985 3075 0.043334 AGGTGGCTCTGGTCTATGGT 59.957 55.000 0.00 0.00 0.00 3.55
3006 3101 2.367567 TGTGAACCCTAACTCACTCACC 59.632 50.000 4.07 0.00 42.06 4.02
3013 3108 0.790993 TAACTCACTCACCCCCTCCT 59.209 55.000 0.00 0.00 0.00 3.69
3030 3125 2.963782 CTCCTACATAACCCTAGCCGTT 59.036 50.000 0.00 0.00 0.00 4.44
3060 3155 1.302033 CTCTCACTGTGCCGCCTTT 60.302 57.895 2.12 0.00 0.00 3.11
3140 3235 1.236628 CCCGTCGTTCGAGATCCTAT 58.763 55.000 0.00 0.00 42.86 2.57
3160 3255 5.651139 CCTATCCGGGAGAACGATAATAAGA 59.349 44.000 0.00 0.00 35.47 2.10
3183 3278 3.224324 GGGGAGCGTCTCGGCATA 61.224 66.667 0.00 0.00 34.64 3.14
3184 3279 2.574955 GGGGAGCGTCTCGGCATAT 61.575 63.158 0.00 0.00 34.64 1.78
3196 3291 2.281761 GCATATGACTGCCCCCGG 60.282 66.667 6.97 0.00 36.10 5.73
3197 3292 3.120086 GCATATGACTGCCCCCGGT 62.120 63.158 6.97 0.00 36.10 5.28
3339 3436 3.008517 TGGCTGGCCAATCGGAGA 61.009 61.111 12.27 0.00 44.12 3.71
3344 3442 1.618837 GCTGGCCAATCGGAGAGTATA 59.381 52.381 7.01 0.00 43.63 1.47
3413 3523 7.604549 TGATGTTTCGGTTCTATGTACTGTAA 58.395 34.615 0.00 0.00 0.00 2.41
3415 3525 5.865552 TGTTTCGGTTCTATGTACTGTAAGC 59.134 40.000 0.00 0.00 37.60 3.09
3419 3529 3.797256 GGTTCTATGTACTGTAAGCGCTG 59.203 47.826 12.58 0.00 37.60 5.18
3425 3535 2.230266 TGTACTGTAAGCGCTGACATGA 59.770 45.455 27.70 15.62 37.60 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.074412 ACAAAGTTTCATAGGCACCTCG 58.926 45.455 0.00 0.00 0.00 4.63
28 30 2.231721 TCGACGGGTATTGTGATTGACA 59.768 45.455 0.00 0.00 0.00 3.58
37 39 1.407979 AGGCTTAGTCGACGGGTATTG 59.592 52.381 10.46 0.00 0.00 1.90
61 63 7.010339 ACACCATATCTTTATAAGCTCCTCC 57.990 40.000 0.00 0.00 0.00 4.30
75 77 2.888594 GTGCACACGTACACCATATCT 58.111 47.619 13.17 0.00 0.00 1.98
88 90 7.021196 ACAATAAATCTCATAAACGTGCACAC 58.979 34.615 18.64 0.00 0.00 3.82
102 104 9.920826 CACATGTACACACATACAATAAATCTC 57.079 33.333 0.00 0.00 43.73 2.75
108 110 5.518487 CGCTCACATGTACACACATACAATA 59.482 40.000 0.00 0.00 43.73 1.90
110 112 3.677596 CGCTCACATGTACACACATACAA 59.322 43.478 0.00 0.00 43.73 2.41
239 241 5.335127 CGCTCTTTTGGACCTGATATTTTG 58.665 41.667 0.00 0.00 0.00 2.44
326 331 1.738099 GATGCTGTTGCGACTCGGT 60.738 57.895 5.50 0.00 43.34 4.69
352 364 2.336554 TGATTTTGCGCTCTTTCAGC 57.663 45.000 9.73 0.00 45.85 4.26
353 365 4.478699 TGATTGATTTTGCGCTCTTTCAG 58.521 39.130 9.73 0.00 0.00 3.02
354 366 4.502171 TGATTGATTTTGCGCTCTTTCA 57.498 36.364 9.73 4.18 0.00 2.69
355 367 5.723135 GCAATGATTGATTTTGCGCTCTTTC 60.723 40.000 9.76 1.24 36.72 2.62
356 368 4.092383 GCAATGATTGATTTTGCGCTCTTT 59.908 37.500 9.76 0.00 36.72 2.52
357 369 3.615496 GCAATGATTGATTTTGCGCTCTT 59.385 39.130 9.76 0.00 36.72 2.85
358 370 3.184541 GCAATGATTGATTTTGCGCTCT 58.815 40.909 9.76 0.00 36.72 4.09
359 371 2.283351 GGCAATGATTGATTTTGCGCTC 59.717 45.455 9.76 0.00 45.13 5.03
360 372 2.093869 AGGCAATGATTGATTTTGCGCT 60.094 40.909 9.76 0.00 45.13 5.92
361 373 2.273557 AGGCAATGATTGATTTTGCGC 58.726 42.857 9.76 0.00 45.13 6.09
362 374 3.550275 CAGAGGCAATGATTGATTTTGCG 59.450 43.478 9.76 0.00 45.13 4.85
363 375 4.501071 ACAGAGGCAATGATTGATTTTGC 58.499 39.130 9.76 0.00 43.83 3.68
364 376 7.360607 GGAAAACAGAGGCAATGATTGATTTTG 60.361 37.037 9.76 4.15 0.00 2.44
365 377 6.652062 GGAAAACAGAGGCAATGATTGATTTT 59.348 34.615 9.76 5.18 0.00 1.82
366 378 6.013984 AGGAAAACAGAGGCAATGATTGATTT 60.014 34.615 9.76 0.00 0.00 2.17
367 379 5.482878 AGGAAAACAGAGGCAATGATTGATT 59.517 36.000 9.76 0.00 0.00 2.57
368 380 5.021458 AGGAAAACAGAGGCAATGATTGAT 58.979 37.500 9.76 0.00 0.00 2.57
369 381 4.219070 CAGGAAAACAGAGGCAATGATTGA 59.781 41.667 9.76 0.00 0.00 2.57
370 382 4.021719 ACAGGAAAACAGAGGCAATGATTG 60.022 41.667 0.00 0.00 0.00 2.67
371 383 4.154942 ACAGGAAAACAGAGGCAATGATT 58.845 39.130 0.00 0.00 0.00 2.57
372 384 3.771216 ACAGGAAAACAGAGGCAATGAT 58.229 40.909 0.00 0.00 0.00 2.45
373 385 3.228188 ACAGGAAAACAGAGGCAATGA 57.772 42.857 0.00 0.00 0.00 2.57
374 386 3.610114 CGAACAGGAAAACAGAGGCAATG 60.610 47.826 0.00 0.00 0.00 2.82
375 387 2.554032 CGAACAGGAAAACAGAGGCAAT 59.446 45.455 0.00 0.00 0.00 3.56
376 388 1.946768 CGAACAGGAAAACAGAGGCAA 59.053 47.619 0.00 0.00 0.00 4.52
377 389 1.140052 TCGAACAGGAAAACAGAGGCA 59.860 47.619 0.00 0.00 0.00 4.75
378 390 1.531578 GTCGAACAGGAAAACAGAGGC 59.468 52.381 0.00 0.00 0.00 4.70
379 391 2.833794 TGTCGAACAGGAAAACAGAGG 58.166 47.619 0.00 0.00 0.00 3.69
380 392 4.511454 TCAATGTCGAACAGGAAAACAGAG 59.489 41.667 0.00 0.00 0.00 3.35
381 393 4.447290 TCAATGTCGAACAGGAAAACAGA 58.553 39.130 0.00 0.00 0.00 3.41
382 394 4.511454 TCTCAATGTCGAACAGGAAAACAG 59.489 41.667 0.00 0.00 0.00 3.16
383 395 4.447290 TCTCAATGTCGAACAGGAAAACA 58.553 39.130 0.00 0.00 0.00 2.83
384 396 4.511826 ACTCTCAATGTCGAACAGGAAAAC 59.488 41.667 0.00 0.00 0.00 2.43
385 397 4.703897 ACTCTCAATGTCGAACAGGAAAA 58.296 39.130 0.00 0.00 0.00 2.29
386 398 4.336889 ACTCTCAATGTCGAACAGGAAA 57.663 40.909 0.00 0.00 0.00 3.13
387 399 4.336889 AACTCTCAATGTCGAACAGGAA 57.663 40.909 0.00 0.00 0.00 3.36
388 400 4.336889 AAACTCTCAATGTCGAACAGGA 57.663 40.909 0.00 0.00 0.00 3.86
389 401 6.727824 ATTAAACTCTCAATGTCGAACAGG 57.272 37.500 0.00 0.00 0.00 4.00
400 412 9.959721 AGGCTACATCTTTAATTAAACTCTCAA 57.040 29.630 6.54 0.00 0.00 3.02
403 415 9.833917 GGTAGGCTACATCTTTAATTAAACTCT 57.166 33.333 24.96 0.00 0.00 3.24
404 416 8.762426 CGGTAGGCTACATCTTTAATTAAACTC 58.238 37.037 24.96 1.82 0.00 3.01
405 417 8.480501 TCGGTAGGCTACATCTTTAATTAAACT 58.519 33.333 24.96 3.22 0.00 2.66
406 418 8.652810 TCGGTAGGCTACATCTTTAATTAAAC 57.347 34.615 24.96 2.79 0.00 2.01
407 419 8.480501 ACTCGGTAGGCTACATCTTTAATTAAA 58.519 33.333 24.96 10.16 0.00 1.52
408 420 8.015185 ACTCGGTAGGCTACATCTTTAATTAA 57.985 34.615 24.96 0.00 0.00 1.40
409 421 7.521099 CGACTCGGTAGGCTACATCTTTAATTA 60.521 40.741 24.96 0.00 0.00 1.40
410 422 6.481434 ACTCGGTAGGCTACATCTTTAATT 57.519 37.500 24.96 0.00 0.00 1.40
411 423 5.278364 CGACTCGGTAGGCTACATCTTTAAT 60.278 44.000 24.96 3.03 0.00 1.40
412 424 4.036027 CGACTCGGTAGGCTACATCTTTAA 59.964 45.833 24.96 2.56 0.00 1.52
413 425 3.562973 CGACTCGGTAGGCTACATCTTTA 59.437 47.826 24.96 3.82 0.00 1.85
414 426 2.358267 CGACTCGGTAGGCTACATCTTT 59.642 50.000 24.96 5.93 0.00 2.52
415 427 1.948145 CGACTCGGTAGGCTACATCTT 59.052 52.381 24.96 7.33 0.00 2.40
416 428 1.595466 CGACTCGGTAGGCTACATCT 58.405 55.000 24.96 5.16 0.00 2.90
417 429 0.040246 GCGACTCGGTAGGCTACATC 60.040 60.000 24.96 14.95 0.00 3.06
418 430 0.750546 TGCGACTCGGTAGGCTACAT 60.751 55.000 24.96 8.18 0.00 2.29
419 431 0.961857 TTGCGACTCGGTAGGCTACA 60.962 55.000 24.96 5.79 0.00 2.74
420 432 0.525029 GTTGCGACTCGGTAGGCTAC 60.525 60.000 16.40 16.40 0.00 3.58
421 433 0.961857 TGTTGCGACTCGGTAGGCTA 60.962 55.000 5.50 0.00 0.00 3.93
422 434 2.214181 CTGTTGCGACTCGGTAGGCT 62.214 60.000 5.50 0.00 0.00 4.58
423 435 1.805945 CTGTTGCGACTCGGTAGGC 60.806 63.158 5.50 0.00 0.00 3.93
424 436 1.805945 GCTGTTGCGACTCGGTAGG 60.806 63.158 5.50 0.00 0.00 3.18
425 437 0.458543 ATGCTGTTGCGACTCGGTAG 60.459 55.000 5.50 0.00 43.34 3.18
426 438 0.457853 GATGCTGTTGCGACTCGGTA 60.458 55.000 5.50 0.00 43.34 4.02
427 439 1.738099 GATGCTGTTGCGACTCGGT 60.738 57.895 5.50 0.00 43.34 4.69
428 440 2.792290 CGATGCTGTTGCGACTCGG 61.792 63.158 5.50 0.00 43.34 4.63
429 441 2.691522 CGATGCTGTTGCGACTCG 59.308 61.111 5.50 2.28 43.34 4.18
430 442 2.397252 GCGATGCTGTTGCGACTC 59.603 61.111 5.50 0.00 43.34 3.36
431 443 3.121030 GGCGATGCTGTTGCGACT 61.121 61.111 5.50 0.00 43.34 4.18
432 444 3.422303 TGGCGATGCTGTTGCGAC 61.422 61.111 0.00 0.00 43.34 5.19
433 445 3.422303 GTGGCGATGCTGTTGCGA 61.422 61.111 0.00 0.00 43.34 5.10
434 446 3.252665 TTGTGGCGATGCTGTTGCG 62.253 57.895 0.00 0.00 43.34 4.85
435 447 1.443194 CTTGTGGCGATGCTGTTGC 60.443 57.895 0.00 0.00 40.20 4.17
436 448 1.443194 GCTTGTGGCGATGCTGTTG 60.443 57.895 0.00 0.00 0.00 3.33
437 449 1.859427 CAGCTTGTGGCGATGCTGTT 61.859 55.000 13.12 0.00 45.31 3.16
438 450 2.330372 CAGCTTGTGGCGATGCTGT 61.330 57.895 13.12 0.00 45.31 4.40
446 458 1.835483 CGTCACTGTCAGCTTGTGGC 61.835 60.000 0.00 0.00 42.19 5.01
447 459 1.224069 CCGTCACTGTCAGCTTGTGG 61.224 60.000 0.00 0.00 33.04 4.17
448 460 1.835483 GCCGTCACTGTCAGCTTGTG 61.835 60.000 0.00 0.00 0.00 3.33
449 461 1.595382 GCCGTCACTGTCAGCTTGT 60.595 57.895 0.00 0.00 0.00 3.16
450 462 2.320587 GGCCGTCACTGTCAGCTTG 61.321 63.158 0.00 0.00 0.00 4.01
451 463 2.031163 GGCCGTCACTGTCAGCTT 59.969 61.111 0.00 0.00 0.00 3.74
489 501 4.946478 ACCCACTATCATACTTGCTCTC 57.054 45.455 0.00 0.00 0.00 3.20
490 502 7.310113 GCTATAACCCACTATCATACTTGCTCT 60.310 40.741 0.00 0.00 0.00 4.09
491 503 6.814146 GCTATAACCCACTATCATACTTGCTC 59.186 42.308 0.00 0.00 0.00 4.26
492 504 6.295916 GGCTATAACCCACTATCATACTTGCT 60.296 42.308 0.00 0.00 0.00 3.91
493 505 5.875359 GGCTATAACCCACTATCATACTTGC 59.125 44.000 0.00 0.00 0.00 4.01
508 520 3.396260 TCATGTAAGCGGGCTATAACC 57.604 47.619 0.00 0.00 0.00 2.85
509 521 5.721232 AGTATCATGTAAGCGGGCTATAAC 58.279 41.667 0.00 0.00 0.00 1.89
510 522 5.995565 AGTATCATGTAAGCGGGCTATAA 57.004 39.130 0.00 0.00 0.00 0.98
511 523 5.995565 AAGTATCATGTAAGCGGGCTATA 57.004 39.130 0.00 0.00 0.00 1.31
512 524 4.891992 AAGTATCATGTAAGCGGGCTAT 57.108 40.909 0.00 0.00 0.00 2.97
513 525 4.682778 AAAGTATCATGTAAGCGGGCTA 57.317 40.909 0.00 0.00 0.00 3.93
514 526 3.560636 AAAGTATCATGTAAGCGGGCT 57.439 42.857 0.00 0.00 0.00 5.19
515 527 3.377172 ACAAAAGTATCATGTAAGCGGGC 59.623 43.478 0.00 0.00 0.00 6.13
516 528 4.876107 AGACAAAAGTATCATGTAAGCGGG 59.124 41.667 0.00 0.00 0.00 6.13
517 529 7.715265 ATAGACAAAAGTATCATGTAAGCGG 57.285 36.000 0.00 0.00 0.00 5.52
581 593 7.304497 TGAGAGCTTACTCCTCTTACTTTTT 57.696 36.000 0.29 0.00 44.65 1.94
582 594 6.919775 TGAGAGCTTACTCCTCTTACTTTT 57.080 37.500 0.29 0.00 44.65 2.27
583 595 6.439058 ACATGAGAGCTTACTCCTCTTACTTT 59.561 38.462 0.00 0.00 44.65 2.66
584 596 5.955355 ACATGAGAGCTTACTCCTCTTACTT 59.045 40.000 0.00 0.00 44.65 2.24
585 597 5.515106 ACATGAGAGCTTACTCCTCTTACT 58.485 41.667 0.00 0.00 44.65 2.24
586 598 5.845391 ACATGAGAGCTTACTCCTCTTAC 57.155 43.478 0.00 0.00 44.65 2.34
587 599 7.347252 TCTTACATGAGAGCTTACTCCTCTTA 58.653 38.462 0.00 0.00 44.65 2.10
588 600 6.191315 TCTTACATGAGAGCTTACTCCTCTT 58.809 40.000 0.00 0.00 44.65 2.85
589 601 5.761205 TCTTACATGAGAGCTTACTCCTCT 58.239 41.667 0.00 0.00 44.65 3.69
590 602 6.072112 CTCTTACATGAGAGCTTACTCCTC 57.928 45.833 0.00 0.00 44.65 3.71
600 612 7.880160 ATATAGCTAGGCTCTTACATGAGAG 57.120 40.000 0.00 3.05 44.79 3.20
601 613 8.329502 TGTATATAGCTAGGCTCTTACATGAGA 58.670 37.037 0.00 0.00 40.44 3.27
602 614 8.512966 TGTATATAGCTAGGCTCTTACATGAG 57.487 38.462 0.00 0.00 40.44 2.90
613 625 9.832445 TGCCTAAAAATATGTATATAGCTAGGC 57.168 33.333 19.19 19.19 39.97 3.93
635 647 9.643693 CTTTCTTCACATTTATTGTATTTGCCT 57.356 29.630 0.00 0.00 36.57 4.75
636 648 9.638239 TCTTTCTTCACATTTATTGTATTTGCC 57.362 29.630 0.00 0.00 36.57 4.52
648 660 9.874205 CTTCTCTCTATCTCTTTCTTCACATTT 57.126 33.333 0.00 0.00 0.00 2.32
649 661 9.253832 TCTTCTCTCTATCTCTTTCTTCACATT 57.746 33.333 0.00 0.00 0.00 2.71
650 662 8.821686 TCTTCTCTCTATCTCTTTCTTCACAT 57.178 34.615 0.00 0.00 0.00 3.21
651 663 8.821686 ATCTTCTCTCTATCTCTTTCTTCACA 57.178 34.615 0.00 0.00 0.00 3.58
690 702 2.678471 AAGTTGGCCATTGCATTAGC 57.322 45.000 6.09 0.00 40.13 3.09
691 703 6.592798 CAATAAAGTTGGCCATTGCATTAG 57.407 37.500 6.09 0.00 40.13 1.73
697 709 4.191033 TGAGCAATAAAGTTGGCCATTG 57.809 40.909 6.09 8.38 0.00 2.82
698 710 6.736110 ATATGAGCAATAAAGTTGGCCATT 57.264 33.333 6.09 0.00 0.00 3.16
699 711 6.736110 AATATGAGCAATAAAGTTGGCCAT 57.264 33.333 6.09 0.00 0.00 4.40
700 712 6.833416 AGTAATATGAGCAATAAAGTTGGCCA 59.167 34.615 0.00 0.00 0.00 5.36
701 713 7.141363 CAGTAATATGAGCAATAAAGTTGGCC 58.859 38.462 0.00 0.00 0.00 5.36
702 714 7.707104 ACAGTAATATGAGCAATAAAGTTGGC 58.293 34.615 0.00 0.00 0.00 4.52
722 734 9.657419 CCATTATCAATATGCACTCATACAGTA 57.343 33.333 0.00 0.00 37.94 2.74
723 735 7.120285 GCCATTATCAATATGCACTCATACAGT 59.880 37.037 0.00 0.00 37.94 3.55
724 736 7.336176 AGCCATTATCAATATGCACTCATACAG 59.664 37.037 0.00 0.00 37.94 2.74
725 737 7.170277 AGCCATTATCAATATGCACTCATACA 58.830 34.615 0.00 0.00 37.94 2.29
726 738 7.621428 AGCCATTATCAATATGCACTCATAC 57.379 36.000 0.00 0.00 37.94 2.39
728 740 9.910267 TTATAGCCATTATCAATATGCACTCAT 57.090 29.630 0.00 0.00 36.73 2.90
729 741 9.737844 TTTATAGCCATTATCAATATGCACTCA 57.262 29.630 0.00 0.00 0.00 3.41
739 751 9.697990 TGCCATATCATTTATAGCCATTATCAA 57.302 29.630 0.00 0.00 0.00 2.57
740 752 9.346005 CTGCCATATCATTTATAGCCATTATCA 57.654 33.333 0.00 0.00 0.00 2.15
741 753 9.347240 ACTGCCATATCATTTATAGCCATTATC 57.653 33.333 0.00 0.00 0.00 1.75
742 754 9.705103 AACTGCCATATCATTTATAGCCATTAT 57.295 29.630 0.00 0.00 0.00 1.28
743 755 9.177608 GAACTGCCATATCATTTATAGCCATTA 57.822 33.333 0.00 0.00 0.00 1.90
744 756 7.123247 GGAACTGCCATATCATTTATAGCCATT 59.877 37.037 0.00 0.00 36.34 3.16
745 757 6.604795 GGAACTGCCATATCATTTATAGCCAT 59.395 38.462 0.00 0.00 36.34 4.40
746 758 5.945784 GGAACTGCCATATCATTTATAGCCA 59.054 40.000 0.00 0.00 36.34 4.75
747 759 5.945784 TGGAACTGCCATATCATTTATAGCC 59.054 40.000 0.00 0.00 43.33 3.93
762 774 1.312815 GATGGCTATGTGGAACTGCC 58.687 55.000 0.00 0.00 44.26 4.85
763 775 1.945394 CTGATGGCTATGTGGAACTGC 59.055 52.381 0.00 0.00 38.04 4.40
764 776 1.945394 GCTGATGGCTATGTGGAACTG 59.055 52.381 0.00 0.00 36.24 3.16
765 777 2.338577 GCTGATGGCTATGTGGAACT 57.661 50.000 0.00 0.00 36.24 3.01
776 788 6.018669 GGTTAATAATATAGCGAGCTGATGGC 60.019 42.308 7.99 0.00 42.19 4.40
777 789 7.041721 TGGTTAATAATATAGCGAGCTGATGG 58.958 38.462 7.99 0.00 0.00 3.51
778 790 8.546244 CATGGTTAATAATATAGCGAGCTGATG 58.454 37.037 7.99 0.00 0.00 3.07
779 791 7.225538 GCATGGTTAATAATATAGCGAGCTGAT 59.774 37.037 7.99 0.00 0.00 2.90
780 792 6.535150 GCATGGTTAATAATATAGCGAGCTGA 59.465 38.462 7.99 0.00 0.00 4.26
781 793 6.536582 AGCATGGTTAATAATATAGCGAGCTG 59.463 38.462 7.99 0.00 0.00 4.24
782 794 6.644347 AGCATGGTTAATAATATAGCGAGCT 58.356 36.000 2.25 2.25 0.00 4.09
783 795 6.758886 AGAGCATGGTTAATAATATAGCGAGC 59.241 38.462 0.00 0.00 0.00 5.03
784 796 9.803315 TTAGAGCATGGTTAATAATATAGCGAG 57.197 33.333 0.00 0.00 0.00 5.03
790 802 9.686683 GGGTGATTAGAGCATGGTTAATAATAT 57.313 33.333 0.00 0.00 0.00 1.28
791 803 8.664992 TGGGTGATTAGAGCATGGTTAATAATA 58.335 33.333 0.00 0.00 0.00 0.98
792 804 7.526041 TGGGTGATTAGAGCATGGTTAATAAT 58.474 34.615 0.00 4.90 0.00 1.28
793 805 6.905736 TGGGTGATTAGAGCATGGTTAATAA 58.094 36.000 0.00 0.00 0.00 1.40
794 806 6.508030 TGGGTGATTAGAGCATGGTTAATA 57.492 37.500 0.00 0.00 0.00 0.98
795 807 5.387113 TGGGTGATTAGAGCATGGTTAAT 57.613 39.130 0.00 5.56 0.00 1.40
796 808 4.853468 TGGGTGATTAGAGCATGGTTAA 57.147 40.909 0.00 0.68 0.00 2.01
797 809 4.411869 TGATGGGTGATTAGAGCATGGTTA 59.588 41.667 0.00 0.00 0.00 2.85
798 810 3.202818 TGATGGGTGATTAGAGCATGGTT 59.797 43.478 0.00 0.00 0.00 3.67
799 811 2.779430 TGATGGGTGATTAGAGCATGGT 59.221 45.455 0.00 0.00 0.00 3.55
800 812 3.181447 ACTGATGGGTGATTAGAGCATGG 60.181 47.826 0.00 0.00 0.00 3.66
801 813 4.082665 ACTGATGGGTGATTAGAGCATG 57.917 45.455 0.00 0.00 0.00 4.06
802 814 4.712476 GAACTGATGGGTGATTAGAGCAT 58.288 43.478 0.00 0.00 0.00 3.79
803 815 3.430790 CGAACTGATGGGTGATTAGAGCA 60.431 47.826 0.00 0.00 0.00 4.26
804 816 3.126831 CGAACTGATGGGTGATTAGAGC 58.873 50.000 0.00 0.00 0.00 4.09
805 817 3.126831 GCGAACTGATGGGTGATTAGAG 58.873 50.000 0.00 0.00 0.00 2.43
806 818 2.766263 AGCGAACTGATGGGTGATTAGA 59.234 45.455 0.00 0.00 0.00 2.10
807 819 3.185246 AGCGAACTGATGGGTGATTAG 57.815 47.619 0.00 0.00 0.00 1.73
1028 1060 3.494336 CCTTGAGCTTGAGCCGCG 61.494 66.667 0.00 0.00 43.38 6.46
1272 1316 1.298157 GCGTATGCTTGGTGTGCTCA 61.298 55.000 0.00 0.00 38.39 4.26
1350 1394 1.920325 CAGGCAGGTCTCTTCCCCA 60.920 63.158 0.00 0.00 0.00 4.96
1356 1400 4.704103 TCCGGCAGGCAGGTCTCT 62.704 66.667 10.21 0.00 37.47 3.10
1397 1441 0.965866 CTCGAGGGTGCAGTACTCCA 60.966 60.000 3.91 0.00 33.29 3.86
1398 1442 0.680280 TCTCGAGGGTGCAGTACTCC 60.680 60.000 13.56 0.00 0.00 3.85
1435 1479 1.502640 CCGAGAAGACGACGAGCTT 59.497 57.895 0.00 4.54 35.09 3.74
1467 1511 3.222354 GACACCGGTCTTGGCGAGT 62.222 63.158 2.59 0.00 40.99 4.18
1489 1533 2.885113 CACGCCGATGGAGTCTGA 59.115 61.111 0.00 0.00 32.34 3.27
1582 1626 0.526096 TTTACGCTACGGATGTCGGC 60.526 55.000 0.00 0.00 44.45 5.54
1583 1627 1.194495 GTTTACGCTACGGATGTCGG 58.806 55.000 0.00 0.00 44.45 4.79
1704 1748 2.158959 GTTCGGCGTGATGGTCTCG 61.159 63.158 6.85 0.00 36.57 4.04
1743 1787 2.033911 TTTGGCAGGAGCATCGCA 59.966 55.556 0.00 0.00 44.61 5.10
1861 1905 0.638746 CGGTAAGCATTGTCGTCGTC 59.361 55.000 0.00 0.00 0.00 4.20
2031 2075 1.079127 CTTCCGTGCCACGAAGGAT 60.079 57.895 20.57 0.00 46.05 3.24
2062 2106 3.537874 GTAGGGCCTGATCCGCGT 61.538 66.667 18.53 0.00 0.00 6.01
2145 2189 3.803054 AGCCTCTTCTGCAGCTCA 58.197 55.556 9.47 0.00 0.00 4.26
2165 2209 2.752238 CCTGCTCGTCGGAGAGGT 60.752 66.667 9.46 0.00 43.27 3.85
2409 2456 1.005512 CACGTCGGGAATGTCCACA 60.006 57.895 0.00 0.00 38.64 4.17
2458 2520 2.203640 ACCACCGTCTGAGCTGGA 60.204 61.111 0.00 0.00 0.00 3.86
2496 2558 1.741528 AACCAGAAACGACCGTTTGT 58.258 45.000 22.82 16.94 46.80 2.83
2499 2561 0.379316 GCAAACCAGAAACGACCGTT 59.621 50.000 1.53 1.53 40.45 4.44
2551 2614 3.275999 ACATTCCGTTACATGGCCTAAC 58.724 45.455 3.32 3.60 0.00 2.34
2552 2615 3.199071 AGACATTCCGTTACATGGCCTAA 59.801 43.478 3.32 0.00 0.00 2.69
2555 2618 1.940613 GAGACATTCCGTTACATGGCC 59.059 52.381 0.00 0.00 0.00 5.36
2566 2631 6.563010 CGAGCGAATGATAAAAGAGACATTCC 60.563 42.308 0.00 0.00 42.86 3.01
2587 2652 1.346197 CATCACACACATCGCGAGC 59.654 57.895 16.66 0.00 0.00 5.03
2609 2674 6.040278 TCAAAGCTCATTTGTAATCCAACACA 59.960 34.615 0.00 0.00 46.96 3.72
2610 2675 6.363357 GTCAAAGCTCATTTGTAATCCAACAC 59.637 38.462 0.00 0.00 46.96 3.32
2627 2692 7.962441 ACTATTTTGTTATTTGGGTCAAAGCT 58.038 30.769 0.00 0.00 36.76 3.74
2658 2723 9.569167 GCACCTAAATGAACCTTAAAGATTAAC 57.431 33.333 0.00 0.00 0.00 2.01
2711 2778 9.708092 GGTCTCACTTTTACTAGAGTAACAATT 57.292 33.333 0.00 0.00 39.92 2.32
2713 2780 7.229306 TCGGTCTCACTTTTACTAGAGTAACAA 59.771 37.037 0.00 0.86 39.92 2.83
2723 2790 9.379791 CCTTTATAAATCGGTCTCACTTTTACT 57.620 33.333 0.00 0.00 0.00 2.24
2730 2797 4.024809 GCAGCCTTTATAAATCGGTCTCAC 60.025 45.833 0.00 0.00 0.00 3.51
2738 2805 7.751768 AATGGTAGAGCAGCCTTTATAAATC 57.248 36.000 0.00 0.00 0.00 2.17
2750 2817 4.264253 TCCAATGACAAATGGTAGAGCAG 58.736 43.478 9.70 0.00 37.94 4.24
2758 2825 4.020396 TCCCAAACATCCAATGACAAATGG 60.020 41.667 4.62 4.62 38.09 3.16
2761 2828 4.040217 CCTTCCCAAACATCCAATGACAAA 59.960 41.667 0.00 0.00 0.00 2.83
2764 2831 2.497273 CCCTTCCCAAACATCCAATGAC 59.503 50.000 0.00 0.00 0.00 3.06
2765 2832 2.559478 CCCCTTCCCAAACATCCAATGA 60.559 50.000 0.00 0.00 0.00 2.57
2766 2833 1.832998 CCCCTTCCCAAACATCCAATG 59.167 52.381 0.00 0.00 0.00 2.82
2769 2836 1.162505 TTCCCCTTCCCAAACATCCA 58.837 50.000 0.00 0.00 0.00 3.41
2773 2840 0.863956 ACCATTCCCCTTCCCAAACA 59.136 50.000 0.00 0.00 0.00 2.83
2779 2846 0.324645 ATGTGCACCATTCCCCTTCC 60.325 55.000 15.69 0.00 0.00 3.46
2784 2851 2.491152 CGCATGTGCACCATTCCC 59.509 61.111 15.69 0.00 42.21 3.97
2791 2858 3.662623 CTGAGCAGCGCATGTGCAC 62.663 63.158 31.29 22.46 43.82 4.57
2793 2860 4.831307 GCTGAGCAGCGCATGTGC 62.831 66.667 23.64 23.64 45.29 4.57
2827 2894 1.461127 GCAATAATAAGGCTCGGCTCG 59.539 52.381 0.00 0.00 0.00 5.03
2843 2910 0.039618 AACCATTCCTGACCGGCAAT 59.960 50.000 0.00 0.00 0.00 3.56
2872 2939 3.470645 AGCGGCTCGTTAATTAATCCT 57.529 42.857 0.00 0.00 0.00 3.24
2896 2963 2.565841 GTCTTGAACAGTGGCACTTCT 58.434 47.619 19.43 7.77 0.00 2.85
2910 2977 2.546778 GACCACAGTTCAACGTCTTGA 58.453 47.619 0.00 0.00 34.39 3.02
2929 2996 0.621571 AGATGTGCCTGGGCTTAGGA 60.622 55.000 13.05 0.00 40.42 2.94
2968 3058 0.905357 ACACCATAGACCAGAGCCAC 59.095 55.000 0.00 0.00 0.00 5.01
2969 3059 0.904649 CACACCATAGACCAGAGCCA 59.095 55.000 0.00 0.00 0.00 4.75
2980 3070 4.164981 AGTGAGTTAGGGTTCACACCATA 58.835 43.478 7.29 0.00 46.43 2.74
2981 3071 2.979678 AGTGAGTTAGGGTTCACACCAT 59.020 45.455 7.29 0.00 46.43 3.55
2985 3075 2.367567 GGTGAGTGAGTTAGGGTTCACA 59.632 50.000 7.29 0.00 44.72 3.58
3006 3101 2.258109 GCTAGGGTTATGTAGGAGGGG 58.742 57.143 0.00 0.00 0.00 4.79
3013 3108 7.452501 ACAATAGATAACGGCTAGGGTTATGTA 59.547 37.037 2.24 3.58 39.87 2.29
3030 3125 5.163405 GGCACAGTGAGAGGAACAATAGATA 60.163 44.000 4.15 0.00 0.00 1.98
3060 3155 3.546543 GTCGGGATGGGATCGCCA 61.547 66.667 7.38 6.35 38.86 5.69
3090 3185 0.472734 ACCTGCTCTCCTGACCAACT 60.473 55.000 0.00 0.00 0.00 3.16
3140 3235 6.415206 AAATCTTATTATCGTTCTCCCGGA 57.585 37.500 0.73 0.00 0.00 5.14
3160 3255 0.676782 CCGAGACGCTCCCCAAAAAT 60.677 55.000 2.00 0.00 0.00 1.82
3182 3277 0.834687 GGATACCGGGGGCAGTCATA 60.835 60.000 6.32 0.00 0.00 2.15
3183 3278 2.147387 GGATACCGGGGGCAGTCAT 61.147 63.158 6.32 0.00 0.00 3.06
3184 3279 2.766651 GGATACCGGGGGCAGTCA 60.767 66.667 6.32 0.00 0.00 3.41
3191 3286 1.461461 ACTGGGATGGATACCGGGG 60.461 63.158 6.32 0.00 41.81 5.73
3196 3291 0.763223 ACGGGGACTGGGATGGATAC 60.763 60.000 0.00 0.00 40.47 2.24
3197 3292 0.471211 GACGGGGACTGGGATGGATA 60.471 60.000 0.00 0.00 40.47 2.59
3333 3430 5.048224 GGGATGAACGAATTATACTCTCCGA 60.048 44.000 0.00 0.00 0.00 4.55
3339 3436 7.390718 GCAAATAGGGGATGAACGAATTATACT 59.609 37.037 0.00 0.00 0.00 2.12
3344 3442 4.536765 AGCAAATAGGGGATGAACGAATT 58.463 39.130 0.00 0.00 0.00 2.17
3413 3523 4.419280 CGATATCTAATCATGTCAGCGCT 58.581 43.478 2.64 2.64 0.00 5.92
3415 3525 4.419280 AGCGATATCTAATCATGTCAGCG 58.581 43.478 0.34 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.