Multiple sequence alignment - TraesCS7D01G519100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G519100 chr7D 100.000 3813 0 0 1 3813 617115857 617112045 0.000000e+00 7042
1 TraesCS7D01G519100 chr7D 83.363 553 63 14 1260 1794 616943299 616943840 5.730000e-133 484
2 TraesCS7D01G519100 chr7A 91.001 1089 59 18 755 1831 709991168 709990107 0.000000e+00 1432
3 TraesCS7D01G519100 chr7A 92.390 841 58 3 2097 2932 709989824 709988985 0.000000e+00 1194
4 TraesCS7D01G519100 chr7A 95.513 468 20 1 289 755 709991667 709991200 0.000000e+00 747
5 TraesCS7D01G519100 chr7A 82.065 552 71 15 1260 1794 709697988 709698528 2.700000e-121 446
6 TraesCS7D01G519100 chr7A 84.112 428 42 17 1291 1700 709677848 709678267 1.280000e-104 390
7 TraesCS7D01G519100 chr7A 82.479 468 52 18 3366 3813 48457461 48457918 2.150000e-102 383
8 TraesCS7D01G519100 chr7A 90.845 284 22 4 3 282 709992203 709991920 1.000000e-100 377
9 TraesCS7D01G519100 chr7A 81.042 480 56 22 3357 3813 77094970 77095437 2.180000e-92 350
10 TraesCS7D01G519100 chr7A 87.781 311 23 5 3494 3794 273526346 273526041 2.180000e-92 350
11 TraesCS7D01G519100 chr7A 80.206 485 63 19 1230 1695 709710618 709711088 2.200000e-87 333
12 TraesCS7D01G519100 chr7A 77.831 415 49 36 3362 3758 594510353 594509964 2.310000e-52 217
13 TraesCS7D01G519100 chr7A 83.857 223 22 8 1886 2098 709990110 709989892 2.320000e-47 200
14 TraesCS7D01G519100 chr7B 94.437 755 38 4 3 755 711484328 711483576 0.000000e+00 1158
15 TraesCS7D01G519100 chr7B 90.651 845 69 4 2097 2932 711481398 711480555 0.000000e+00 1114
16 TraesCS7D01G519100 chr7B 91.126 586 49 3 2932 3515 595102158 595101574 0.000000e+00 791
17 TraesCS7D01G519100 chr7B 89.043 648 34 20 757 1396 711483542 711482924 0.000000e+00 769
18 TraesCS7D01G519100 chr7B 93.111 450 27 3 1389 1838 711482395 711481950 0.000000e+00 656
19 TraesCS7D01G519100 chr7B 82.629 426 50 17 1291 1700 711005118 711005535 4.680000e-94 355
20 TraesCS7D01G519100 chr7B 81.092 476 63 17 1331 1794 711049932 711050392 4.680000e-94 355
21 TraesCS7D01G519100 chr7B 78.421 380 62 20 3366 3733 408642698 408643069 2.960000e-56 230
22 TraesCS7D01G519100 chr3B 90.445 607 57 1 2931 3536 497932098 497931492 0.000000e+00 798
23 TraesCS7D01G519100 chr3B 86.826 334 29 5 3491 3813 408239141 408239470 3.620000e-95 359
24 TraesCS7D01G519100 chr3D 88.285 589 64 5 2932 3516 180631223 180630636 0.000000e+00 701
25 TraesCS7D01G519100 chr3D 87.150 607 71 7 2935 3536 180667648 180667044 0.000000e+00 682
26 TraesCS7D01G519100 chr3D 88.401 319 24 3 3505 3813 91616666 91616981 4.650000e-99 372
27 TraesCS7D01G519100 chr3A 87.245 588 70 4 2932 3517 397473047 397473631 0.000000e+00 665
28 TraesCS7D01G519100 chr1B 87.075 588 70 6 2932 3515 357019356 357018771 0.000000e+00 660
29 TraesCS7D01G519100 chr1B 86.107 619 74 11 2932 3544 216506296 216506908 0.000000e+00 656
30 TraesCS7D01G519100 chr1D 86.294 591 70 9 2932 3517 65522423 65523007 1.930000e-177 632
31 TraesCS7D01G519100 chr6A 85.434 611 80 8 2932 3536 111747878 111748485 8.990000e-176 627
32 TraesCS7D01G519100 chr6A 82.477 331 43 9 3494 3813 399988385 399988059 3.750000e-70 276
33 TraesCS7D01G519100 chr6A 82.377 244 22 15 3494 3733 106252482 106252256 3.890000e-45 193
34 TraesCS7D01G519100 chr5D 88.623 334 23 5 3491 3813 550159549 550159878 3.570000e-105 392
35 TraesCS7D01G519100 chr5D 87.283 346 27 7 3479 3813 304630413 304630074 2.780000e-101 379
36 TraesCS7D01G519100 chr5B 82.083 480 50 23 3357 3813 133342503 133342037 1.000000e-100 377
37 TraesCS7D01G519100 chr5B 80.983 468 59 18 3366 3813 308983051 308983508 1.010000e-90 344
38 TraesCS7D01G519100 chr5B 83.077 325 25 17 3500 3813 639507607 639507302 6.280000e-68 268
39 TraesCS7D01G519100 chr5A 81.197 468 58 19 3366 3813 450228198 450228655 2.180000e-92 350
40 TraesCS7D01G519100 chr1A 80.417 480 59 22 3357 3813 294436801 294437268 2.200000e-87 333
41 TraesCS7D01G519100 chr4A 77.887 407 52 31 3366 3758 252213797 252213415 6.410000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G519100 chr7D 617112045 617115857 3812 True 7042.00 7042 100.0000 1 3813 1 chr7D.!!$R1 3812
1 TraesCS7D01G519100 chr7D 616943299 616943840 541 False 484.00 484 83.3630 1260 1794 1 chr7D.!!$F1 534
2 TraesCS7D01G519100 chr7A 709988985 709992203 3218 True 790.00 1432 90.7212 3 2932 5 chr7A.!!$R3 2929
3 TraesCS7D01G519100 chr7A 709697988 709698528 540 False 446.00 446 82.0650 1260 1794 1 chr7A.!!$F4 534
4 TraesCS7D01G519100 chr7B 711480555 711484328 3773 True 924.25 1158 91.8105 3 2932 4 chr7B.!!$R2 2929
5 TraesCS7D01G519100 chr7B 595101574 595102158 584 True 791.00 791 91.1260 2932 3515 1 chr7B.!!$R1 583
6 TraesCS7D01G519100 chr3B 497931492 497932098 606 True 798.00 798 90.4450 2931 3536 1 chr3B.!!$R1 605
7 TraesCS7D01G519100 chr3D 180630636 180631223 587 True 701.00 701 88.2850 2932 3516 1 chr3D.!!$R1 584
8 TraesCS7D01G519100 chr3D 180667044 180667648 604 True 682.00 682 87.1500 2935 3536 1 chr3D.!!$R2 601
9 TraesCS7D01G519100 chr3A 397473047 397473631 584 False 665.00 665 87.2450 2932 3517 1 chr3A.!!$F1 585
10 TraesCS7D01G519100 chr1B 357018771 357019356 585 True 660.00 660 87.0750 2932 3515 1 chr1B.!!$R1 583
11 TraesCS7D01G519100 chr1B 216506296 216506908 612 False 656.00 656 86.1070 2932 3544 1 chr1B.!!$F1 612
12 TraesCS7D01G519100 chr1D 65522423 65523007 584 False 632.00 632 86.2940 2932 3517 1 chr1D.!!$F1 585
13 TraesCS7D01G519100 chr6A 111747878 111748485 607 False 627.00 627 85.4340 2932 3536 1 chr6A.!!$F1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 640 1.222113 GGCTAGCAGGGACCAGAAC 59.778 63.158 18.24 0.0 0.00 3.01 F
1215 1505 0.316772 CGTAGTACGGACGCATCCAG 60.317 60.000 15.02 0.0 46.67 3.86 F
1243 1539 0.381089 AGTCTTTATCGTCGCTCCCG 59.619 55.000 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 3082 2.482721 CCACCGTAATGTCCAACTCAAC 59.517 50.0 0.00 0.0 0.0 3.18 R
2523 3689 0.032678 AGACACTGCTCGTCCAACTG 59.967 55.0 0.00 0.0 33.7 3.16 R
3115 4288 0.526662 GTGTCTGGTACTCCGAGTGG 59.473 60.0 11.52 0.0 36.3 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.762370 TGAGTGCACGGATATGTCCAT 59.238 47.619 12.01 0.00 45.37 3.41
90 92 1.710244 TGGATTGAACCTGTGGGTGAT 59.290 47.619 0.00 0.00 46.67 3.06
92 94 2.369394 GATTGAACCTGTGGGTGATCC 58.631 52.381 0.00 0.00 46.67 3.36
111 113 4.360951 TCCCGTCAACTAGAACCATTTT 57.639 40.909 0.00 0.00 0.00 1.82
127 129 5.938322 ACCATTTTAGTATGTGCAGTTTCG 58.062 37.500 0.00 0.00 0.00 3.46
146 148 5.749596 TTCGTCTGCTCAATTTCTTTTCA 57.250 34.783 0.00 0.00 0.00 2.69
166 168 3.165071 CACCCCCTAATTTTGCTCAACT 58.835 45.455 0.00 0.00 0.00 3.16
206 211 4.647424 TTTGTTTCCAGTCCATCACAAC 57.353 40.909 0.00 0.00 0.00 3.32
267 272 4.162812 CAAATAAACCGACACCATTTCCG 58.837 43.478 0.00 0.00 0.00 4.30
389 640 1.222113 GGCTAGCAGGGACCAGAAC 59.778 63.158 18.24 0.00 0.00 3.01
407 658 3.721575 AGAACCCACAATATGCCCTCATA 59.278 43.478 0.00 0.00 39.31 2.15
568 819 4.134563 TCCACTCCAACAGCTTTTCTTAC 58.865 43.478 0.00 0.00 0.00 2.34
582 833 7.742089 CAGCTTTTCTTACAAACTATGAGAACG 59.258 37.037 0.00 0.00 0.00 3.95
608 859 5.516339 AGTTGCGTCTGAAAAATTGTCAAAG 59.484 36.000 0.00 0.00 0.00 2.77
736 988 2.897326 GGGGGAAGTGCAAGTTTAACAT 59.103 45.455 0.00 0.00 0.00 2.71
741 993 6.404734 GGGGAAGTGCAAGTTTAACATCATAG 60.405 42.308 0.00 0.00 0.00 2.23
847 1132 4.202245 TCTTCCCAAGGTACTCGAATTG 57.798 45.455 0.00 0.00 38.49 2.32
974 1264 9.534565 CCCTTTTCCTTTTCTTTTTCTTTCTAG 57.465 33.333 0.00 0.00 0.00 2.43
976 1266 9.586435 CTTTTCCTTTTCTTTTTCTTTCTAGCA 57.414 29.630 0.00 0.00 0.00 3.49
978 1268 9.750125 TTTCCTTTTCTTTTTCTTTCTAGCATC 57.250 29.630 0.00 0.00 0.00 3.91
979 1269 7.886338 TCCTTTTCTTTTTCTTTCTAGCATCC 58.114 34.615 0.00 0.00 0.00 3.51
980 1270 6.803807 CCTTTTCTTTTTCTTTCTAGCATCCG 59.196 38.462 0.00 0.00 0.00 4.18
981 1271 4.946784 TCTTTTTCTTTCTAGCATCCGC 57.053 40.909 0.00 0.00 38.99 5.54
982 1272 4.323417 TCTTTTTCTTTCTAGCATCCGCA 58.677 39.130 0.00 0.00 42.27 5.69
983 1273 4.759693 TCTTTTTCTTTCTAGCATCCGCAA 59.240 37.500 0.00 0.00 42.27 4.85
984 1274 5.240623 TCTTTTTCTTTCTAGCATCCGCAAA 59.759 36.000 0.00 0.00 42.27 3.68
985 1275 5.446143 TTTTCTTTCTAGCATCCGCAAAA 57.554 34.783 0.00 0.00 42.27 2.44
986 1276 5.446143 TTTCTTTCTAGCATCCGCAAAAA 57.554 34.783 0.00 0.00 42.27 1.94
1023 1313 8.207521 AGAAGAGAACTTTTCTTTGTGAGAAG 57.792 34.615 2.45 0.00 44.80 2.85
1025 1315 8.567285 AAGAGAACTTTTCTTTGTGAGAAGAA 57.433 30.769 3.51 0.00 44.80 2.52
1049 1339 2.815158 AGAGAGAGAAGGGAACTGGTC 58.185 52.381 0.00 0.00 42.68 4.02
1083 1373 0.690762 TCTACCCAAGTTGGCCTCAC 59.309 55.000 17.07 0.00 35.79 3.51
1214 1504 1.723273 CGTAGTACGGACGCATCCA 59.277 57.895 15.02 0.00 46.67 3.41
1215 1505 0.316772 CGTAGTACGGACGCATCCAG 60.317 60.000 15.02 0.00 46.67 3.86
1243 1539 0.381089 AGTCTTTATCGTCGCTCCCG 59.619 55.000 0.00 0.00 0.00 5.14
1573 2415 4.232221 CAAGCTGGTAATCTTTGCTGTTG 58.768 43.478 0.00 0.00 33.96 3.33
1574 2416 2.229784 AGCTGGTAATCTTTGCTGTTGC 59.770 45.455 0.00 0.00 40.20 4.17
1600 2442 7.064134 CGCAGACTTAATTGTTAGTACCATTCA 59.936 37.037 0.00 0.00 0.00 2.57
1632 2474 3.363673 CGATCTCGAATGACATTGGCATG 60.364 47.826 5.58 0.00 43.02 4.06
1637 2479 2.350102 CGAATGACATTGGCATGGATCG 60.350 50.000 5.58 8.17 34.27 3.69
1638 2480 2.643995 ATGACATTGGCATGGATCGA 57.356 45.000 3.61 0.00 34.27 3.59
1732 2574 2.505407 TCTGTGTTATGGATGGAGTGGG 59.495 50.000 0.00 0.00 0.00 4.61
1786 2628 1.133792 CACCCTCACTCCAGGTTTTGT 60.134 52.381 0.00 0.00 0.00 2.83
1802 2644 1.482278 TTGTTTTCGTGCCATTTCGC 58.518 45.000 0.00 0.00 0.00 4.70
1809 2651 3.063670 TCGTGCCATTTCGCATAATTG 57.936 42.857 0.00 0.00 41.70 2.32
1815 2657 2.292016 CCATTTCGCATAATTGCCGGTA 59.708 45.455 1.90 0.00 46.57 4.02
1816 2658 3.296628 CATTTCGCATAATTGCCGGTAC 58.703 45.455 1.90 0.00 46.57 3.34
1823 2665 4.677584 GCATAATTGCCGGTACAATTTCA 58.322 39.130 20.58 8.35 45.63 2.69
1828 2670 6.524101 AATTGCCGGTACAATTTCAGTAAT 57.476 33.333 12.65 0.00 45.63 1.89
1887 2962 3.153369 TGCACACCACCATACTGAATT 57.847 42.857 0.00 0.00 0.00 2.17
1893 2968 4.018415 ACACCACCATACTGAATTTAGGCT 60.018 41.667 1.95 0.00 0.00 4.58
1918 2997 5.661458 AGTACTGTGAAATTAGGTGATCGG 58.339 41.667 0.00 0.00 0.00 4.18
1924 3007 5.048507 GTGAAATTAGGTGATCGGGTCTAC 58.951 45.833 0.00 0.00 0.00 2.59
1936 3019 6.426025 GTGATCGGGTCTACAAAACTTTAACT 59.574 38.462 0.00 0.00 0.00 2.24
1941 3024 7.933033 TCGGGTCTACAAAACTTTAACTACATT 59.067 33.333 0.00 0.00 0.00 2.71
1954 3037 9.517609 ACTTTAACTACATTATCTTCGCTAGTG 57.482 33.333 0.00 0.00 0.00 2.74
1955 3038 9.517609 CTTTAACTACATTATCTTCGCTAGTGT 57.482 33.333 2.66 0.00 0.00 3.55
2046 3137 2.309755 TGAGAATCCTGTCTGCCCAATT 59.690 45.455 0.00 0.00 0.00 2.32
2052 3143 5.653255 ATCCTGTCTGCCCAATTTATACT 57.347 39.130 0.00 0.00 0.00 2.12
2053 3144 5.450818 TCCTGTCTGCCCAATTTATACTT 57.549 39.130 0.00 0.00 0.00 2.24
2105 3267 3.568007 TGATCTGCTTTTGCCGTAAACTT 59.432 39.130 0.00 0.00 46.87 2.66
2119 3281 5.702670 GCCGTAAACTTAGACTTACCCTTTT 59.297 40.000 0.00 0.00 0.00 2.27
2120 3282 6.347969 GCCGTAAACTTAGACTTACCCTTTTG 60.348 42.308 0.00 0.00 0.00 2.44
2121 3283 6.930722 CCGTAAACTTAGACTTACCCTTTTGA 59.069 38.462 0.00 0.00 0.00 2.69
2249 3415 3.057456 CCTATCTCGTATACAGGGTGCAC 60.057 52.174 8.80 8.80 0.00 4.57
2272 3438 3.365265 GCCAGCTCCAAACACCGG 61.365 66.667 0.00 0.00 0.00 5.28
2393 3559 1.134438 GGGACTGGGACTGGGAACTT 61.134 60.000 0.00 0.00 0.00 2.66
2402 3568 2.555199 GACTGGGAACTTGATGGATCG 58.445 52.381 0.00 0.00 0.00 3.69
2410 3576 3.526931 ACTTGATGGATCGTCATCGTT 57.473 42.857 7.26 0.00 44.68 3.85
2417 3583 0.800683 GATCGTCATCGTTGTCCGCA 60.801 55.000 0.00 0.00 38.33 5.69
2420 3586 1.135344 TCGTCATCGTTGTCCGCATTA 60.135 47.619 0.00 0.00 38.33 1.90
2455 3621 2.996621 AGAAGAATCAAAGTCGGAAGCG 59.003 45.455 0.00 0.00 0.00 4.68
2456 3622 2.743636 AGAATCAAAGTCGGAAGCGA 57.256 45.000 0.00 0.00 0.00 4.93
2518 3684 2.102252 GGTGGGTAGAGCAAGAGATCAG 59.898 54.545 0.00 0.00 30.99 2.90
2523 3689 5.303078 TGGGTAGAGCAAGAGATCAGAATAC 59.697 44.000 0.00 0.00 30.99 1.89
2541 3707 0.249489 ACAGTTGGACGAGCAGTGTC 60.249 55.000 0.00 0.00 35.60 3.67
2546 3712 1.112916 TGGACGAGCAGTGTCTGGAA 61.113 55.000 0.00 0.00 36.58 3.53
2552 3718 2.147150 GAGCAGTGTCTGGAAGGAAAC 58.853 52.381 0.00 0.00 31.21 2.78
2630 3796 3.551635 ATCATAGAGGGGATCGAGGTT 57.448 47.619 0.00 0.00 0.00 3.50
2638 3804 1.363080 GGATCGAGGTTAGGCCGAC 59.637 63.158 0.00 0.00 43.70 4.79
2663 3829 4.482386 CAATGGAGAGTTGAAAGCATGTG 58.518 43.478 0.00 0.00 0.00 3.21
2808 3978 6.980397 GTGTTTTGACAACAAAGATCCAGAAT 59.020 34.615 0.00 0.00 44.97 2.40
2865 4035 9.801873 GTTATTAAAGAGCATAATTTCTTGGCA 57.198 29.630 0.00 0.00 34.09 4.92
2953 4123 1.567649 ACGAGGACATGTACCTAGGGA 59.432 52.381 14.81 0.00 37.93 4.20
3115 4288 1.258445 ACCACTCGACTGTCCCCATC 61.258 60.000 1.55 0.00 0.00 3.51
3184 4358 1.833630 CTGGGATAGCAACAGTCAGGA 59.166 52.381 0.00 0.00 0.00 3.86
3238 4412 3.510360 ACAGACGTTACCAGTAATGCTCT 59.490 43.478 9.22 8.55 35.92 4.09
3283 4457 0.112606 TTGGGTAACGGGGCATTCAA 59.887 50.000 0.00 0.00 37.60 2.69
3332 4506 1.675801 CCTCTGCTCCTGCACAAGA 59.324 57.895 0.00 0.00 45.31 3.02
3336 4510 1.141657 TCTGCTCCTGCACAAGAGTTT 59.858 47.619 5.74 0.00 45.31 2.66
3519 4695 2.920724 TCTGTTCCCACGACAATTGA 57.079 45.000 13.59 0.00 0.00 2.57
3520 4696 3.417069 TCTGTTCCCACGACAATTGAT 57.583 42.857 13.59 0.00 0.00 2.57
3540 4716 2.829914 CCACCGTGGGGCATGATG 60.830 66.667 9.99 0.00 36.48 3.07
3541 4717 2.045045 CACCGTGGGGCATGATGT 60.045 61.111 0.00 0.00 36.48 3.06
3542 4718 2.114670 CACCGTGGGGCATGATGTC 61.115 63.158 0.00 0.00 36.48 3.06
3543 4719 2.300967 ACCGTGGGGCATGATGTCT 61.301 57.895 0.00 0.00 36.48 3.41
3544 4720 1.820906 CCGTGGGGCATGATGTCTG 60.821 63.158 0.00 0.00 0.00 3.51
3545 4721 1.078214 CGTGGGGCATGATGTCTGT 60.078 57.895 0.00 0.00 0.00 3.41
3546 4722 1.091771 CGTGGGGCATGATGTCTGTC 61.092 60.000 0.00 0.00 0.00 3.51
3547 4723 1.091771 GTGGGGCATGATGTCTGTCG 61.092 60.000 0.00 0.00 0.00 4.35
3548 4724 1.264045 TGGGGCATGATGTCTGTCGA 61.264 55.000 0.00 0.00 0.00 4.20
3549 4725 0.531532 GGGGCATGATGTCTGTCGAG 60.532 60.000 0.00 0.00 0.00 4.04
3550 4726 1.156645 GGGCATGATGTCTGTCGAGC 61.157 60.000 0.00 0.00 0.00 5.03
3551 4727 1.156645 GGCATGATGTCTGTCGAGCC 61.157 60.000 0.00 0.00 34.83 4.70
3552 4728 0.460811 GCATGATGTCTGTCGAGCCA 60.461 55.000 0.00 0.00 0.00 4.75
3553 4729 1.809271 GCATGATGTCTGTCGAGCCAT 60.809 52.381 0.00 0.00 0.00 4.40
3554 4730 1.865340 CATGATGTCTGTCGAGCCATG 59.135 52.381 0.00 0.00 0.00 3.66
3555 4731 0.176449 TGATGTCTGTCGAGCCATGG 59.824 55.000 7.63 7.63 0.00 3.66
3556 4732 0.176680 GATGTCTGTCGAGCCATGGT 59.823 55.000 14.67 0.00 0.00 3.55
3557 4733 0.107993 ATGTCTGTCGAGCCATGGTG 60.108 55.000 14.67 3.93 0.00 4.17
3558 4734 2.103042 GTCTGTCGAGCCATGGTGC 61.103 63.158 14.67 4.71 0.00 5.01
3559 4735 2.046988 CTGTCGAGCCATGGTGCA 60.047 61.111 14.67 4.81 0.00 4.57
3560 4736 1.672030 CTGTCGAGCCATGGTGCAA 60.672 57.895 14.67 0.00 0.00 4.08
3561 4737 1.228094 TGTCGAGCCATGGTGCAAA 60.228 52.632 14.67 0.00 0.00 3.68
3562 4738 0.608856 TGTCGAGCCATGGTGCAAAT 60.609 50.000 14.67 0.00 0.00 2.32
3563 4739 0.179156 GTCGAGCCATGGTGCAAATG 60.179 55.000 14.67 0.00 0.00 2.32
3564 4740 1.140161 CGAGCCATGGTGCAAATGG 59.860 57.895 20.58 20.58 46.29 3.16
3565 4741 1.597797 CGAGCCATGGTGCAAATGGT 61.598 55.000 23.81 14.39 45.46 3.55
3566 4742 0.609662 GAGCCATGGTGCAAATGGTT 59.390 50.000 23.81 20.20 45.46 3.67
3567 4743 1.002315 GAGCCATGGTGCAAATGGTTT 59.998 47.619 23.81 15.75 45.46 3.27
3568 4744 1.420891 AGCCATGGTGCAAATGGTTTT 59.579 42.857 23.81 12.04 45.46 2.43
3569 4745 2.158638 AGCCATGGTGCAAATGGTTTTT 60.159 40.909 23.81 10.20 45.46 1.94
3570 4746 2.226200 GCCATGGTGCAAATGGTTTTTC 59.774 45.455 23.81 9.07 45.46 2.29
3571 4747 3.474600 CCATGGTGCAAATGGTTTTTCA 58.525 40.909 17.80 0.00 39.87 2.69
3572 4748 4.073549 CCATGGTGCAAATGGTTTTTCAT 58.926 39.130 17.80 0.00 39.87 2.57
3573 4749 4.154556 CCATGGTGCAAATGGTTTTTCATC 59.845 41.667 17.80 0.00 39.87 2.92
3574 4750 4.412796 TGGTGCAAATGGTTTTTCATCA 57.587 36.364 0.00 0.00 28.49 3.07
3575 4751 4.774124 TGGTGCAAATGGTTTTTCATCAA 58.226 34.783 0.00 0.00 28.16 2.57
3576 4752 5.374921 TGGTGCAAATGGTTTTTCATCAAT 58.625 33.333 0.00 0.00 28.16 2.57
3577 4753 5.826737 TGGTGCAAATGGTTTTTCATCAATT 59.173 32.000 0.00 0.00 28.16 2.32
3578 4754 6.320672 TGGTGCAAATGGTTTTTCATCAATTT 59.679 30.769 0.00 0.00 28.16 1.82
3579 4755 7.147949 TGGTGCAAATGGTTTTTCATCAATTTT 60.148 29.630 0.00 0.00 28.16 1.82
3580 4756 7.379262 GGTGCAAATGGTTTTTCATCAATTTTC 59.621 33.333 0.00 0.00 0.00 2.29
3581 4757 7.379262 GTGCAAATGGTTTTTCATCAATTTTCC 59.621 33.333 0.00 0.00 0.00 3.13
3582 4758 6.578172 GCAAATGGTTTTTCATCAATTTTCCG 59.422 34.615 0.00 0.00 0.00 4.30
3583 4759 5.861222 ATGGTTTTTCATCAATTTTCCGC 57.139 34.783 0.00 0.00 0.00 5.54
3584 4760 4.697514 TGGTTTTTCATCAATTTTCCGCA 58.302 34.783 0.00 0.00 0.00 5.69
3585 4761 4.749099 TGGTTTTTCATCAATTTTCCGCAG 59.251 37.500 0.00 0.00 0.00 5.18
3586 4762 4.377328 GGTTTTTCATCAATTTTCCGCAGC 60.377 41.667 0.00 0.00 0.00 5.25
3587 4763 3.657015 TTTCATCAATTTTCCGCAGCA 57.343 38.095 0.00 0.00 0.00 4.41
3588 4764 2.925578 TCATCAATTTTCCGCAGCAG 57.074 45.000 0.00 0.00 0.00 4.24
3589 4765 2.435422 TCATCAATTTTCCGCAGCAGA 58.565 42.857 0.00 0.00 0.00 4.26
3590 4766 3.018856 TCATCAATTTTCCGCAGCAGAT 58.981 40.909 0.00 0.00 0.00 2.90
3591 4767 3.065786 TCATCAATTTTCCGCAGCAGATC 59.934 43.478 0.00 0.00 0.00 2.75
3592 4768 1.398041 TCAATTTTCCGCAGCAGATCG 59.602 47.619 0.00 0.00 0.00 3.69
3593 4769 1.398041 CAATTTTCCGCAGCAGATCGA 59.602 47.619 0.00 0.00 0.00 3.59
3594 4770 1.009829 ATTTTCCGCAGCAGATCGAC 58.990 50.000 0.00 0.00 0.00 4.20
3595 4771 1.351430 TTTTCCGCAGCAGATCGACG 61.351 55.000 0.00 0.00 0.00 5.12
3596 4772 2.207788 TTTCCGCAGCAGATCGACGA 62.208 55.000 0.00 0.00 0.00 4.20
3597 4773 2.867333 TTCCGCAGCAGATCGACGAC 62.867 60.000 0.00 0.00 0.00 4.34
3598 4774 2.951745 CGCAGCAGATCGACGACC 60.952 66.667 0.00 0.00 0.00 4.79
3599 4775 2.181777 GCAGCAGATCGACGACCA 59.818 61.111 0.00 0.00 0.00 4.02
3600 4776 1.227089 GCAGCAGATCGACGACCAT 60.227 57.895 0.00 0.00 0.00 3.55
3601 4777 1.211818 GCAGCAGATCGACGACCATC 61.212 60.000 0.00 0.00 0.00 3.51
3602 4778 0.932123 CAGCAGATCGACGACCATCG 60.932 60.000 0.00 0.00 46.93 3.84
3603 4779 2.296480 GCAGATCGACGACCATCGC 61.296 63.158 0.00 0.00 45.12 4.58
3604 4780 2.006062 CAGATCGACGACCATCGCG 61.006 63.158 0.00 0.00 45.12 5.87
3605 4781 2.178235 AGATCGACGACCATCGCGA 61.178 57.895 13.09 13.09 45.12 5.87
3606 4782 1.722852 GATCGACGACCATCGCGAG 60.723 63.158 16.66 4.02 45.48 5.03
3607 4783 2.102394 GATCGACGACCATCGCGAGA 62.102 60.000 16.66 3.62 45.48 4.04
3608 4784 2.107151 ATCGACGACCATCGCGAGAG 62.107 60.000 16.66 11.02 45.48 3.20
3609 4785 2.810012 CGACGACCATCGCGAGAGA 61.810 63.158 16.66 0.00 45.12 3.10
3610 4786 1.010574 GACGACCATCGCGAGAGAG 60.011 63.158 16.66 7.39 45.12 3.20
3611 4787 1.429927 GACGACCATCGCGAGAGAGA 61.430 60.000 16.66 0.00 45.12 3.10
3617 4793 3.926003 TCGCGAGAGAGATTGGCT 58.074 55.556 3.71 0.00 34.08 4.75
3618 4794 1.435105 TCGCGAGAGAGATTGGCTG 59.565 57.895 3.71 0.00 34.08 4.85
3619 4795 2.236382 CGCGAGAGAGATTGGCTGC 61.236 63.158 0.00 0.00 0.00 5.25
3620 4796 1.143620 GCGAGAGAGATTGGCTGCT 59.856 57.895 0.00 0.00 0.00 4.24
3621 4797 0.875474 GCGAGAGAGATTGGCTGCTC 60.875 60.000 0.00 0.00 0.00 4.26
3622 4798 0.594540 CGAGAGAGATTGGCTGCTCG 60.595 60.000 0.00 0.00 39.88 5.03
3623 4799 0.743688 GAGAGAGATTGGCTGCTCGA 59.256 55.000 0.00 0.00 36.29 4.04
3624 4800 1.135915 GAGAGAGATTGGCTGCTCGAA 59.864 52.381 0.00 0.00 36.29 3.71
3625 4801 1.761784 AGAGAGATTGGCTGCTCGAAT 59.238 47.619 0.00 0.00 36.29 3.34
3626 4802 2.170187 AGAGAGATTGGCTGCTCGAATT 59.830 45.455 0.00 0.00 36.29 2.17
3627 4803 2.543430 GAGAGATTGGCTGCTCGAATTC 59.457 50.000 0.00 0.00 36.29 2.17
3628 4804 2.170187 AGAGATTGGCTGCTCGAATTCT 59.830 45.455 3.52 0.00 36.29 2.40
3629 4805 2.286872 AGATTGGCTGCTCGAATTCTG 58.713 47.619 3.52 0.00 0.00 3.02
3630 4806 1.332997 GATTGGCTGCTCGAATTCTGG 59.667 52.381 3.52 0.00 0.00 3.86
3631 4807 1.308069 TTGGCTGCTCGAATTCTGGC 61.308 55.000 3.52 8.06 0.00 4.85
3632 4808 2.476320 GGCTGCTCGAATTCTGGCC 61.476 63.158 14.08 0.00 0.00 5.36
3633 4809 1.746615 GCTGCTCGAATTCTGGCCA 60.747 57.895 4.71 4.71 0.00 5.36
3634 4810 1.099879 GCTGCTCGAATTCTGGCCAT 61.100 55.000 5.51 0.00 0.00 4.40
3635 4811 1.386533 CTGCTCGAATTCTGGCCATT 58.613 50.000 5.51 0.00 0.00 3.16
3636 4812 1.065102 CTGCTCGAATTCTGGCCATTG 59.935 52.381 5.51 0.00 0.00 2.82
3637 4813 0.248784 GCTCGAATTCTGGCCATTGC 60.249 55.000 5.51 0.00 0.00 3.56
3638 4814 0.028505 CTCGAATTCTGGCCATTGCG 59.971 55.000 5.51 5.07 38.85 4.85
3639 4815 1.587088 CGAATTCTGGCCATTGCGC 60.587 57.895 5.51 0.00 38.85 6.09
3654 4830 3.415237 GCGCCATGCATACAAACAA 57.585 47.368 0.00 0.00 45.45 2.83
3655 4831 1.707632 GCGCCATGCATACAAACAAA 58.292 45.000 0.00 0.00 45.45 2.83
3656 4832 2.064762 GCGCCATGCATACAAACAAAA 58.935 42.857 0.00 0.00 45.45 2.44
3657 4833 2.092524 GCGCCATGCATACAAACAAAAG 59.907 45.455 0.00 0.00 45.45 2.27
3658 4834 2.667481 CGCCATGCATACAAACAAAAGG 59.333 45.455 0.00 0.00 0.00 3.11
3659 4835 3.613671 CGCCATGCATACAAACAAAAGGA 60.614 43.478 0.00 0.00 0.00 3.36
3660 4836 4.506758 GCCATGCATACAAACAAAAGGAT 58.493 39.130 0.00 0.00 0.00 3.24
3661 4837 4.567959 GCCATGCATACAAACAAAAGGATC 59.432 41.667 0.00 0.00 0.00 3.36
3662 4838 5.722263 CCATGCATACAAACAAAAGGATCA 58.278 37.500 0.00 0.00 0.00 2.92
3663 4839 5.808540 CCATGCATACAAACAAAAGGATCAG 59.191 40.000 0.00 0.00 0.00 2.90
3664 4840 6.392354 CATGCATACAAACAAAAGGATCAGT 58.608 36.000 0.00 0.00 0.00 3.41
3665 4841 5.771469 TGCATACAAACAAAAGGATCAGTG 58.229 37.500 0.00 0.00 0.00 3.66
3666 4842 5.534278 TGCATACAAACAAAAGGATCAGTGA 59.466 36.000 0.00 0.00 0.00 3.41
3667 4843 6.040278 TGCATACAAACAAAAGGATCAGTGAA 59.960 34.615 0.00 0.00 0.00 3.18
3668 4844 6.583806 GCATACAAACAAAAGGATCAGTGAAG 59.416 38.462 0.00 0.00 0.00 3.02
3669 4845 7.651808 CATACAAACAAAAGGATCAGTGAAGT 58.348 34.615 0.00 0.00 0.00 3.01
3670 4846 8.783093 CATACAAACAAAAGGATCAGTGAAGTA 58.217 33.333 0.00 0.00 0.00 2.24
3671 4847 7.823745 ACAAACAAAAGGATCAGTGAAGTAT 57.176 32.000 0.00 0.00 0.00 2.12
3672 4848 7.875971 ACAAACAAAAGGATCAGTGAAGTATC 58.124 34.615 0.00 0.00 0.00 2.24
3673 4849 7.040409 ACAAACAAAAGGATCAGTGAAGTATCC 60.040 37.037 0.00 0.00 39.64 2.59
3674 4850 6.126863 ACAAAAGGATCAGTGAAGTATCCA 57.873 37.500 12.06 0.00 41.44 3.41
3675 4851 6.725364 ACAAAAGGATCAGTGAAGTATCCAT 58.275 36.000 12.06 0.00 41.44 3.41
3676 4852 7.177878 ACAAAAGGATCAGTGAAGTATCCATT 58.822 34.615 12.06 4.59 41.44 3.16
3677 4853 7.671398 ACAAAAGGATCAGTGAAGTATCCATTT 59.329 33.333 12.06 9.69 39.84 2.32
3678 4854 7.636150 AAAGGATCAGTGAAGTATCCATTTG 57.364 36.000 12.06 0.00 41.44 2.32
3679 4855 6.566079 AGGATCAGTGAAGTATCCATTTGA 57.434 37.500 12.06 0.00 41.44 2.69
3680 4856 7.146715 AGGATCAGTGAAGTATCCATTTGAT 57.853 36.000 12.06 0.00 41.44 2.57
3681 4857 7.222872 AGGATCAGTGAAGTATCCATTTGATC 58.777 38.462 12.06 0.00 41.44 2.92
3682 4858 7.072202 AGGATCAGTGAAGTATCCATTTGATCT 59.928 37.037 12.06 0.00 41.44 2.75
3683 4859 8.370940 GGATCAGTGAAGTATCCATTTGATCTA 58.629 37.037 0.00 0.00 39.24 1.98
3684 4860 9.421806 GATCAGTGAAGTATCCATTTGATCTAG 57.578 37.037 0.00 0.00 36.14 2.43
3685 4861 8.311395 TCAGTGAAGTATCCATTTGATCTAGT 57.689 34.615 0.00 0.00 34.76 2.57
3686 4862 8.417106 TCAGTGAAGTATCCATTTGATCTAGTC 58.583 37.037 0.00 0.00 34.76 2.59
3687 4863 8.420222 CAGTGAAGTATCCATTTGATCTAGTCT 58.580 37.037 0.00 0.00 34.76 3.24
3688 4864 8.986991 AGTGAAGTATCCATTTGATCTAGTCTT 58.013 33.333 0.00 0.00 34.76 3.01
3689 4865 9.606631 GTGAAGTATCCATTTGATCTAGTCTTT 57.393 33.333 0.00 0.00 34.76 2.52
3690 4866 9.823647 TGAAGTATCCATTTGATCTAGTCTTTC 57.176 33.333 0.00 0.00 34.76 2.62
3696 4872 9.745018 ATCCATTTGATCTAGTCTTTCTTTGAA 57.255 29.630 0.00 0.00 0.00 2.69
3697 4873 9.745018 TCCATTTGATCTAGTCTTTCTTTGAAT 57.255 29.630 0.00 0.00 0.00 2.57
3729 4905 8.553459 TCTAACAATGAGTTGATCTTTTCCTC 57.447 34.615 0.00 0.00 41.50 3.71
3730 4906 6.581171 AACAATGAGTTGATCTTTTCCTCC 57.419 37.500 0.00 0.00 39.49 4.30
3731 4907 5.885465 ACAATGAGTTGATCTTTTCCTCCT 58.115 37.500 0.00 0.00 38.71 3.69
3732 4908 5.709164 ACAATGAGTTGATCTTTTCCTCCTG 59.291 40.000 0.00 0.00 38.71 3.86
3733 4909 5.768980 ATGAGTTGATCTTTTCCTCCTGA 57.231 39.130 0.00 0.00 0.00 3.86
3734 4910 4.899502 TGAGTTGATCTTTTCCTCCTGAC 58.100 43.478 0.00 0.00 0.00 3.51
3735 4911 4.347876 TGAGTTGATCTTTTCCTCCTGACA 59.652 41.667 0.00 0.00 0.00 3.58
3736 4912 5.013495 TGAGTTGATCTTTTCCTCCTGACAT 59.987 40.000 0.00 0.00 0.00 3.06
3737 4913 5.495640 AGTTGATCTTTTCCTCCTGACATC 58.504 41.667 0.00 0.00 0.00 3.06
3738 4914 5.013495 AGTTGATCTTTTCCTCCTGACATCA 59.987 40.000 0.00 0.00 0.00 3.07
3739 4915 4.836825 TGATCTTTTCCTCCTGACATCAC 58.163 43.478 0.00 0.00 0.00 3.06
3740 4916 3.703001 TCTTTTCCTCCTGACATCACC 57.297 47.619 0.00 0.00 0.00 4.02
3741 4917 2.305927 TCTTTTCCTCCTGACATCACCC 59.694 50.000 0.00 0.00 0.00 4.61
3742 4918 1.741028 TTTCCTCCTGACATCACCCA 58.259 50.000 0.00 0.00 0.00 4.51
3743 4919 1.971149 TTCCTCCTGACATCACCCAT 58.029 50.000 0.00 0.00 0.00 4.00
3744 4920 1.206878 TCCTCCTGACATCACCCATG 58.793 55.000 0.00 0.00 38.64 3.66
3745 4921 0.465097 CCTCCTGACATCACCCATGC 60.465 60.000 0.00 0.00 35.65 4.06
3746 4922 0.812811 CTCCTGACATCACCCATGCG 60.813 60.000 0.00 0.00 35.65 4.73
3747 4923 1.078214 CCTGACATCACCCATGCGT 60.078 57.895 0.00 0.00 35.65 5.24
3748 4924 1.371337 CCTGACATCACCCATGCGTG 61.371 60.000 4.01 4.01 35.65 5.34
3749 4925 0.391528 CTGACATCACCCATGCGTGA 60.392 55.000 15.24 15.24 46.36 4.35
3754 4930 3.880040 TCACCCATGCGTGATCAAT 57.120 47.368 9.14 0.00 37.85 2.57
3755 4931 2.998316 TCACCCATGCGTGATCAATA 57.002 45.000 9.14 0.00 37.85 1.90
3756 4932 3.274095 TCACCCATGCGTGATCAATAA 57.726 42.857 9.14 0.00 37.85 1.40
3757 4933 3.819368 TCACCCATGCGTGATCAATAAT 58.181 40.909 9.14 0.00 37.85 1.28
3758 4934 3.814842 TCACCCATGCGTGATCAATAATC 59.185 43.478 9.14 0.00 37.85 1.75
3759 4935 3.565063 CACCCATGCGTGATCAATAATCA 59.435 43.478 7.72 0.00 42.21 2.57
3760 4936 4.216902 CACCCATGCGTGATCAATAATCAT 59.783 41.667 7.72 0.00 45.94 2.45
3761 4937 5.412286 CACCCATGCGTGATCAATAATCATA 59.588 40.000 7.72 0.00 45.94 2.15
3762 4938 6.003326 ACCCATGCGTGATCAATAATCATAA 58.997 36.000 7.72 0.00 45.94 1.90
3763 4939 6.149973 ACCCATGCGTGATCAATAATCATAAG 59.850 38.462 7.72 0.00 45.94 1.73
3764 4940 6.403964 CCCATGCGTGATCAATAATCATAAGG 60.404 42.308 7.72 0.00 45.94 2.69
3765 4941 6.372381 CCATGCGTGATCAATAATCATAAGGA 59.628 38.462 7.72 0.00 45.94 3.36
3766 4942 7.413767 CCATGCGTGATCAATAATCATAAGGAG 60.414 40.741 7.72 0.00 45.94 3.69
3767 4943 6.758254 TGCGTGATCAATAATCATAAGGAGA 58.242 36.000 0.00 0.00 45.94 3.71
3768 4944 7.216494 TGCGTGATCAATAATCATAAGGAGAA 58.784 34.615 0.00 0.00 45.94 2.87
3769 4945 7.386025 TGCGTGATCAATAATCATAAGGAGAAG 59.614 37.037 0.00 0.00 45.94 2.85
3770 4946 7.600375 GCGTGATCAATAATCATAAGGAGAAGA 59.400 37.037 0.00 0.00 45.94 2.87
3771 4947 9.481340 CGTGATCAATAATCATAAGGAGAAGAA 57.519 33.333 0.00 0.00 45.94 2.52
3773 4949 9.499479 TGATCAATAATCATAAGGAGAAGAAGC 57.501 33.333 0.00 0.00 39.52 3.86
3774 4950 7.953158 TCAATAATCATAAGGAGAAGAAGCG 57.047 36.000 0.00 0.00 0.00 4.68
3775 4951 6.931281 TCAATAATCATAAGGAGAAGAAGCGG 59.069 38.462 0.00 0.00 0.00 5.52
3776 4952 2.604046 TCATAAGGAGAAGAAGCGGC 57.396 50.000 0.00 0.00 0.00 6.53
3777 4953 1.202417 TCATAAGGAGAAGAAGCGGCG 60.202 52.381 0.51 0.51 0.00 6.46
3778 4954 1.112113 ATAAGGAGAAGAAGCGGCGA 58.888 50.000 12.98 0.00 0.00 5.54
3779 4955 0.892755 TAAGGAGAAGAAGCGGCGAA 59.107 50.000 12.98 0.00 0.00 4.70
3780 4956 0.034896 AAGGAGAAGAAGCGGCGAAA 59.965 50.000 12.98 0.00 0.00 3.46
3781 4957 0.390472 AGGAGAAGAAGCGGCGAAAG 60.390 55.000 12.98 0.00 0.00 2.62
3782 4958 1.362406 GGAGAAGAAGCGGCGAAAGG 61.362 60.000 12.98 0.00 0.00 3.11
3783 4959 1.362406 GAGAAGAAGCGGCGAAAGGG 61.362 60.000 12.98 0.00 0.00 3.95
3784 4960 1.375523 GAAGAAGCGGCGAAAGGGA 60.376 57.895 12.98 0.00 0.00 4.20
3785 4961 1.636570 GAAGAAGCGGCGAAAGGGAC 61.637 60.000 12.98 0.00 0.00 4.46
3786 4962 2.358247 GAAGCGGCGAAAGGGACA 60.358 61.111 12.98 0.00 0.00 4.02
3787 4963 2.668550 AAGCGGCGAAAGGGACAC 60.669 61.111 12.98 0.00 0.00 3.67
3788 4964 4.699522 AGCGGCGAAAGGGACACC 62.700 66.667 12.98 0.00 0.00 4.16
3797 4973 2.118513 AGGGACACCTCGCTCTGT 59.881 61.111 0.00 0.00 46.95 3.41
3798 4974 1.534235 AGGGACACCTCGCTCTGTT 60.534 57.895 0.00 0.00 46.95 3.16
3799 4975 1.079750 GGGACACCTCGCTCTGTTC 60.080 63.158 0.00 0.00 0.00 3.18
3800 4976 1.536943 GGGACACCTCGCTCTGTTCT 61.537 60.000 0.00 0.00 0.00 3.01
3801 4977 0.389166 GGACACCTCGCTCTGTTCTG 60.389 60.000 0.00 0.00 0.00 3.02
3802 4978 0.598562 GACACCTCGCTCTGTTCTGA 59.401 55.000 0.00 0.00 0.00 3.27
3803 4979 1.203523 GACACCTCGCTCTGTTCTGAT 59.796 52.381 0.00 0.00 0.00 2.90
3804 4980 1.203523 ACACCTCGCTCTGTTCTGATC 59.796 52.381 0.00 0.00 0.00 2.92
3805 4981 0.453793 ACCTCGCTCTGTTCTGATCG 59.546 55.000 0.00 0.00 0.00 3.69
3806 4982 0.869454 CCTCGCTCTGTTCTGATCGC 60.869 60.000 0.00 0.00 0.00 4.58
3807 4983 0.100325 CTCGCTCTGTTCTGATCGCT 59.900 55.000 0.00 0.00 0.00 4.93
3808 4984 0.179153 TCGCTCTGTTCTGATCGCTG 60.179 55.000 0.00 0.00 0.00 5.18
3809 4985 1.144565 CGCTCTGTTCTGATCGCTGG 61.145 60.000 0.00 0.00 0.00 4.85
3810 4986 0.108424 GCTCTGTTCTGATCGCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
3811 4987 1.674221 GCTCTGTTCTGATCGCTGGTT 60.674 52.381 0.00 0.00 0.00 3.67
3812 4988 2.266554 CTCTGTTCTGATCGCTGGTTC 58.733 52.381 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.929169 CATATCCGTGCACTCACACTG 59.071 52.381 16.19 1.71 43.28 3.66
1 2 1.550524 ACATATCCGTGCACTCACACT 59.449 47.619 16.19 0.00 43.28 3.55
4 5 1.571919 GGACATATCCGTGCACTCAC 58.428 55.000 16.19 0.00 39.78 3.51
21 22 2.297895 CCCAAGTCCCCGTCATGGA 61.298 63.158 0.00 0.00 42.00 3.41
25 26 1.540367 ATTCCCCAAGTCCCCGTCA 60.540 57.895 0.00 0.00 0.00 4.35
90 92 4.360951 AAAATGGTTCTAGTTGACGGGA 57.639 40.909 0.00 0.00 0.00 5.14
92 94 7.548075 ACATACTAAAATGGTTCTAGTTGACGG 59.452 37.037 0.00 0.00 0.00 4.79
127 129 4.550422 GGGTGAAAAGAAATTGAGCAGAC 58.450 43.478 0.00 0.00 0.00 3.51
146 148 3.431415 GAGTTGAGCAAAATTAGGGGGT 58.569 45.455 0.00 0.00 0.00 4.95
166 168 1.320344 ATTGGACTAGAGCGGTGCGA 61.320 55.000 0.00 0.00 0.00 5.10
206 211 5.357032 GGTCTTTACATGGTTTCATAGTGGG 59.643 44.000 0.00 0.00 31.33 4.61
283 288 9.912634 AAATAGTGTTTGTTGTTATCATTCAGG 57.087 29.630 0.00 0.00 0.00 3.86
389 640 3.679389 GACTATGAGGGCATATTGTGGG 58.321 50.000 0.00 0.00 36.45 4.61
407 658 2.670148 GGGGCTCCAATGGACGACT 61.670 63.158 0.00 0.00 0.00 4.18
437 688 1.447314 CCTCGGCGGTTGTACCTTC 60.447 63.158 7.21 0.00 35.66 3.46
568 819 4.084537 ACGCAACTTCGTTCTCATAGTTTG 60.085 41.667 0.00 0.00 40.07 2.93
582 833 5.034152 TGACAATTTTTCAGACGCAACTTC 58.966 37.500 0.00 0.00 0.00 3.01
608 859 5.351465 TGAAAATTTCCGCTGAGTATGACTC 59.649 40.000 3.00 0.00 45.26 3.36
647 898 0.988832 AAAACGGCTGACATAGGGGA 59.011 50.000 0.00 0.00 0.00 4.81
741 993 9.151471 ACATGTAATTTATCCTACGTGCATATC 57.849 33.333 0.00 0.00 38.19 1.63
1025 1315 4.413851 ACCAGTTCCCTTCTCTCTCTTTTT 59.586 41.667 0.00 0.00 0.00 1.94
1030 1320 1.828595 GGACCAGTTCCCTTCTCTCTC 59.171 57.143 0.00 0.00 38.70 3.20
1032 1322 1.276705 GTGGACCAGTTCCCTTCTCTC 59.723 57.143 0.00 0.00 45.17 3.20
1033 1323 1.132689 AGTGGACCAGTTCCCTTCTCT 60.133 52.381 0.00 0.00 45.17 3.10
1034 1324 1.353091 AGTGGACCAGTTCCCTTCTC 58.647 55.000 0.00 0.00 45.17 2.87
1049 1339 9.847224 AACTTGGGTAGAACATATAATTAGTGG 57.153 33.333 5.84 0.00 0.00 4.00
1059 1349 2.916934 AGGCCAACTTGGGTAGAACATA 59.083 45.455 5.01 0.00 38.19 2.29
1083 1373 2.032894 GGCCACATAATGACGACATTCG 60.033 50.000 16.17 11.41 44.34 3.34
1210 1500 5.648092 CGATAAAGACTTTTTGGACCTGGAT 59.352 40.000 5.61 0.00 0.00 3.41
1214 1504 4.689345 CGACGATAAAGACTTTTTGGACCT 59.311 41.667 5.61 0.00 0.00 3.85
1215 1505 4.668431 GCGACGATAAAGACTTTTTGGACC 60.668 45.833 5.61 0.00 0.00 4.46
1243 1539 2.514824 GCTTGGGTCGATCCTGGC 60.515 66.667 17.40 15.75 36.25 4.85
1573 2415 4.628333 TGGTACTAACAATTAAGTCTGCGC 59.372 41.667 0.00 0.00 0.00 6.09
1574 2416 6.903883 ATGGTACTAACAATTAAGTCTGCG 57.096 37.500 0.00 0.00 0.00 5.18
1802 2644 5.890334 ACTGAAATTGTACCGGCAATTATG 58.110 37.500 17.16 13.08 45.17 1.90
1809 2651 8.920509 ATAAAAATTACTGAAATTGTACCGGC 57.079 30.769 0.00 0.00 37.85 6.13
1874 2949 8.204836 AGTACTTAGCCTAAATTCAGTATGGTG 58.795 37.037 0.00 0.00 36.16 4.17
1875 2950 8.204836 CAGTACTTAGCCTAAATTCAGTATGGT 58.795 37.037 0.00 0.00 36.16 3.55
1881 2956 8.547967 TTTCACAGTACTTAGCCTAAATTCAG 57.452 34.615 0.00 0.00 0.00 3.02
1887 2962 8.038944 CACCTAATTTCACAGTACTTAGCCTAA 58.961 37.037 0.00 0.00 0.00 2.69
1893 2968 7.262772 CCGATCACCTAATTTCACAGTACTTA 58.737 38.462 0.00 0.00 0.00 2.24
1936 3019 7.067859 ACCAGTTACACTAGCGAAGATAATGTA 59.932 37.037 0.00 0.00 0.00 2.29
1941 3024 8.681486 TTATACCAGTTACACTAGCGAAGATA 57.319 34.615 0.00 0.00 0.00 1.98
1944 3027 7.972277 TCTTTTATACCAGTTACACTAGCGAAG 59.028 37.037 0.00 0.00 0.00 3.79
1947 3030 8.644318 AATCTTTTATACCAGTTACACTAGCG 57.356 34.615 0.00 0.00 0.00 4.26
1999 3082 2.482721 CCACCGTAATGTCCAACTCAAC 59.517 50.000 0.00 0.00 0.00 3.18
2053 3144 5.980116 ACGCTAAAATATGCACACACAAAAA 59.020 32.000 0.00 0.00 0.00 1.94
2058 3150 4.915085 ACAAACGCTAAAATATGCACACAC 59.085 37.500 0.00 0.00 0.00 3.82
2075 3167 3.060339 GGCAAAAGCAGATCAAACAAACG 60.060 43.478 0.00 0.00 0.00 3.60
2119 3281 4.503910 CACCTCACGGAATCTACAAATCA 58.496 43.478 0.00 0.00 0.00 2.57
2120 3282 3.871594 CCACCTCACGGAATCTACAAATC 59.128 47.826 0.00 0.00 0.00 2.17
2121 3283 3.873910 CCACCTCACGGAATCTACAAAT 58.126 45.455 0.00 0.00 0.00 2.32
2272 3438 2.606551 GCTTCTTGGCTTTGCTTCTGAC 60.607 50.000 0.00 0.00 0.00 3.51
2393 3559 2.481276 GGACAACGATGACGATCCATCA 60.481 50.000 0.00 5.07 42.21 3.07
2410 3576 1.760029 TCATGGCTACTAATGCGGACA 59.240 47.619 0.00 0.00 0.00 4.02
2417 3583 4.215908 TCTTCTCGGTCATGGCTACTAAT 58.784 43.478 0.00 0.00 0.00 1.73
2420 3586 2.145397 TCTTCTCGGTCATGGCTACT 57.855 50.000 0.00 0.00 0.00 2.57
2455 3621 1.648467 GCCATCAGGTTTCAGCCGTC 61.648 60.000 0.00 0.00 37.19 4.79
2456 3622 1.675641 GCCATCAGGTTTCAGCCGT 60.676 57.895 0.00 0.00 37.19 5.68
2489 3655 1.676635 CTCTACCCACCGTCCGTCA 60.677 63.158 0.00 0.00 0.00 4.35
2518 3684 2.668457 CACTGCTCGTCCAACTGTATTC 59.332 50.000 0.00 0.00 0.00 1.75
2523 3689 0.032678 AGACACTGCTCGTCCAACTG 59.967 55.000 0.00 0.00 33.70 3.16
2541 3707 4.627467 CACATTACTCTCGTTTCCTTCCAG 59.373 45.833 0.00 0.00 0.00 3.86
2546 3712 3.576982 TGGACACATTACTCTCGTTTCCT 59.423 43.478 0.00 0.00 31.98 3.36
2552 3718 4.748892 ACTCAATGGACACATTACTCTCG 58.251 43.478 0.00 0.00 45.24 4.04
2558 3724 5.491070 CCTCTGAACTCAATGGACACATTA 58.509 41.667 0.00 0.00 45.24 1.90
2564 3730 3.077359 CAACCCTCTGAACTCAATGGAC 58.923 50.000 0.00 0.00 0.00 4.02
2568 3734 3.244700 CCTGTCAACCCTCTGAACTCAAT 60.245 47.826 0.00 0.00 0.00 2.57
2630 3796 0.975556 TCTCCATTGCTGTCGGCCTA 60.976 55.000 0.00 0.00 40.92 3.93
2638 3804 2.555325 TGCTTTCAACTCTCCATTGCTG 59.445 45.455 0.00 0.00 0.00 4.41
2663 3829 8.783833 TGAATTTATCTATCTAAGCAGCATCC 57.216 34.615 0.00 0.00 0.00 3.51
2691 3861 7.094377 ACAGACACAAACAAACTTCACAATACT 60.094 33.333 0.00 0.00 0.00 2.12
2778 3948 7.122055 TGGATCTTTGTTGTCAAAACACTAGTT 59.878 33.333 0.00 0.00 42.02 2.24
2808 3978 4.174704 AGATGATGCAATGAGGGCTTTA 57.825 40.909 0.00 0.00 0.00 1.85
2858 4028 3.321682 CCTTCAAACCTCAAATGCCAAGA 59.678 43.478 0.00 0.00 0.00 3.02
2859 4029 3.070015 ACCTTCAAACCTCAAATGCCAAG 59.930 43.478 0.00 0.00 0.00 3.61
2865 4035 9.679661 AAAACATTTTACCTTCAAACCTCAAAT 57.320 25.926 0.00 0.00 0.00 2.32
3115 4288 0.526662 GTGTCTGGTACTCCGAGTGG 59.473 60.000 11.52 0.00 36.30 4.00
3184 4358 5.282055 TCTTTATGATGGCGAACTGATCT 57.718 39.130 0.00 0.00 0.00 2.75
3238 4412 3.437213 TCGATGGAGAAGTAAAGGGTGA 58.563 45.455 0.00 0.00 0.00 4.02
3332 4506 0.850784 AGTTACAGGGGGTGCAAACT 59.149 50.000 0.00 0.00 33.07 2.66
3336 4510 0.109723 GTTGAGTTACAGGGGGTGCA 59.890 55.000 0.00 0.00 0.00 4.57
3536 4712 0.176449 CCATGGCTCGACAGACATCA 59.824 55.000 0.00 0.00 46.68 3.07
3537 4713 0.176680 ACCATGGCTCGACAGACATC 59.823 55.000 13.04 0.00 46.68 3.06
3539 4715 1.293179 CACCATGGCTCGACAGACA 59.707 57.895 13.04 0.00 44.08 3.41
3540 4716 2.103042 GCACCATGGCTCGACAGAC 61.103 63.158 13.04 0.00 0.00 3.51
3541 4717 2.110757 TTGCACCATGGCTCGACAGA 62.111 55.000 13.04 0.00 34.04 3.41
3542 4718 1.236616 TTTGCACCATGGCTCGACAG 61.237 55.000 13.04 0.00 34.04 3.51
3543 4719 0.608856 ATTTGCACCATGGCTCGACA 60.609 50.000 13.04 0.00 34.04 4.35
3544 4720 0.179156 CATTTGCACCATGGCTCGAC 60.179 55.000 13.04 0.00 34.04 4.20
3545 4721 1.314534 CCATTTGCACCATGGCTCGA 61.315 55.000 13.04 0.00 34.98 4.04
3546 4722 1.140161 CCATTTGCACCATGGCTCG 59.860 57.895 13.04 1.24 34.98 5.03
3547 4723 0.609662 AACCATTTGCACCATGGCTC 59.390 50.000 19.96 4.04 44.69 4.70
3548 4724 1.058284 AAACCATTTGCACCATGGCT 58.942 45.000 19.96 8.68 44.69 4.75
3549 4725 1.894881 AAAACCATTTGCACCATGGC 58.105 45.000 19.96 0.00 44.69 4.40
3550 4726 3.474600 TGAAAAACCATTTGCACCATGG 58.525 40.909 18.85 18.85 46.07 3.66
3551 4727 4.755629 TGATGAAAAACCATTTGCACCATG 59.244 37.500 0.00 0.00 36.90 3.66
3552 4728 4.970711 TGATGAAAAACCATTTGCACCAT 58.029 34.783 0.00 0.00 36.90 3.55
3553 4729 4.412796 TGATGAAAAACCATTTGCACCA 57.587 36.364 0.00 0.00 36.90 4.17
3554 4730 5.945466 ATTGATGAAAAACCATTTGCACC 57.055 34.783 0.00 0.00 36.90 5.01
3555 4731 7.379262 GGAAAATTGATGAAAAACCATTTGCAC 59.621 33.333 0.00 0.00 36.90 4.57
3556 4732 7.424001 GGAAAATTGATGAAAAACCATTTGCA 58.576 30.769 0.00 0.00 38.45 4.08
3557 4733 6.578172 CGGAAAATTGATGAAAAACCATTTGC 59.422 34.615 0.00 0.00 0.00 3.68
3558 4734 6.578172 GCGGAAAATTGATGAAAAACCATTTG 59.422 34.615 0.00 0.00 0.00 2.32
3559 4735 6.261826 TGCGGAAAATTGATGAAAAACCATTT 59.738 30.769 0.00 0.00 0.00 2.32
3560 4736 5.762218 TGCGGAAAATTGATGAAAAACCATT 59.238 32.000 0.00 0.00 0.00 3.16
3561 4737 5.303971 TGCGGAAAATTGATGAAAAACCAT 58.696 33.333 0.00 0.00 0.00 3.55
3562 4738 4.697514 TGCGGAAAATTGATGAAAAACCA 58.302 34.783 0.00 0.00 0.00 3.67
3563 4739 4.377328 GCTGCGGAAAATTGATGAAAAACC 60.377 41.667 0.00 0.00 0.00 3.27
3564 4740 4.210955 TGCTGCGGAAAATTGATGAAAAAC 59.789 37.500 0.00 0.00 0.00 2.43
3565 4741 4.375272 TGCTGCGGAAAATTGATGAAAAA 58.625 34.783 0.00 0.00 0.00 1.94
3566 4742 3.987547 TGCTGCGGAAAATTGATGAAAA 58.012 36.364 0.00 0.00 0.00 2.29
3567 4743 3.255395 TCTGCTGCGGAAAATTGATGAAA 59.745 39.130 9.09 0.00 0.00 2.69
3568 4744 2.819019 TCTGCTGCGGAAAATTGATGAA 59.181 40.909 9.09 0.00 0.00 2.57
3569 4745 2.435422 TCTGCTGCGGAAAATTGATGA 58.565 42.857 9.09 0.00 0.00 2.92
3570 4746 2.925578 TCTGCTGCGGAAAATTGATG 57.074 45.000 9.09 0.00 0.00 3.07
3571 4747 2.032550 CGATCTGCTGCGGAAAATTGAT 59.967 45.455 16.13 0.00 0.00 2.57
3572 4748 1.398041 CGATCTGCTGCGGAAAATTGA 59.602 47.619 16.13 0.00 0.00 2.57
3573 4749 1.398041 TCGATCTGCTGCGGAAAATTG 59.602 47.619 16.13 3.39 0.00 2.32
3574 4750 1.398390 GTCGATCTGCTGCGGAAAATT 59.602 47.619 16.13 0.00 0.00 1.82
3575 4751 1.009829 GTCGATCTGCTGCGGAAAAT 58.990 50.000 16.13 0.00 0.00 1.82
3576 4752 1.351430 CGTCGATCTGCTGCGGAAAA 61.351 55.000 16.13 0.96 0.00 2.29
3577 4753 1.805539 CGTCGATCTGCTGCGGAAA 60.806 57.895 16.13 1.33 0.00 3.13
3578 4754 2.202610 CGTCGATCTGCTGCGGAA 60.203 61.111 16.13 0.00 0.00 4.30
3579 4755 3.131478 TCGTCGATCTGCTGCGGA 61.131 61.111 14.42 14.42 0.00 5.54
3580 4756 2.951745 GTCGTCGATCTGCTGCGG 60.952 66.667 0.95 0.95 0.00 5.69
3581 4757 2.943680 ATGGTCGTCGATCTGCTGCG 62.944 60.000 7.10 0.00 0.00 5.18
3582 4758 1.211818 GATGGTCGTCGATCTGCTGC 61.212 60.000 7.10 0.00 0.00 5.25
3583 4759 0.932123 CGATGGTCGTCGATCTGCTG 60.932 60.000 7.10 0.00 44.06 4.41
3584 4760 1.356979 CGATGGTCGTCGATCTGCT 59.643 57.895 7.10 0.00 44.06 4.24
3585 4761 2.296480 GCGATGGTCGTCGATCTGC 61.296 63.158 15.67 4.75 44.06 4.26
3586 4762 2.006062 CGCGATGGTCGTCGATCTG 61.006 63.158 15.67 0.00 44.06 2.90
3587 4763 2.107151 CTCGCGATGGTCGTCGATCT 62.107 60.000 10.36 0.00 43.19 2.75
3588 4764 1.722852 CTCGCGATGGTCGTCGATC 60.723 63.158 10.36 0.00 43.19 3.69
3589 4765 2.107151 CTCTCGCGATGGTCGTCGAT 62.107 60.000 10.36 0.00 43.19 3.59
3590 4766 2.810012 CTCTCGCGATGGTCGTCGA 61.810 63.158 10.36 12.31 44.06 4.20
3591 4767 2.351322 CTCTCGCGATGGTCGTCG 60.351 66.667 10.36 8.09 42.81 5.12
3592 4768 1.010574 CTCTCTCGCGATGGTCGTC 60.011 63.158 10.36 0.00 42.81 4.20
3593 4769 0.816018 ATCTCTCTCGCGATGGTCGT 60.816 55.000 10.36 0.00 42.81 4.34
3594 4770 0.309302 AATCTCTCTCGCGATGGTCG 59.691 55.000 10.36 0.00 43.89 4.79
3595 4771 1.601663 CCAATCTCTCTCGCGATGGTC 60.602 57.143 10.36 0.00 0.00 4.02
3596 4772 0.387202 CCAATCTCTCTCGCGATGGT 59.613 55.000 10.36 0.00 0.00 3.55
3597 4773 0.943359 GCCAATCTCTCTCGCGATGG 60.943 60.000 10.36 14.15 0.00 3.51
3598 4774 0.031857 AGCCAATCTCTCTCGCGATG 59.968 55.000 10.36 6.04 0.00 3.84
3599 4775 0.031857 CAGCCAATCTCTCTCGCGAT 59.968 55.000 10.36 0.00 0.00 4.58
3600 4776 1.435105 CAGCCAATCTCTCTCGCGA 59.565 57.895 9.26 9.26 0.00 5.87
3601 4777 2.236382 GCAGCCAATCTCTCTCGCG 61.236 63.158 0.00 0.00 0.00 5.87
3602 4778 0.875474 GAGCAGCCAATCTCTCTCGC 60.875 60.000 0.00 0.00 0.00 5.03
3603 4779 0.594540 CGAGCAGCCAATCTCTCTCG 60.595 60.000 0.00 0.00 38.05 4.04
3604 4780 0.743688 TCGAGCAGCCAATCTCTCTC 59.256 55.000 0.00 0.00 0.00 3.20
3605 4781 1.189752 TTCGAGCAGCCAATCTCTCT 58.810 50.000 0.00 0.00 0.00 3.10
3606 4782 2.237393 ATTCGAGCAGCCAATCTCTC 57.763 50.000 0.00 0.00 0.00 3.20
3607 4783 2.170187 AGAATTCGAGCAGCCAATCTCT 59.830 45.455 0.00 0.00 0.00 3.10
3608 4784 2.287373 CAGAATTCGAGCAGCCAATCTC 59.713 50.000 0.00 0.00 0.00 2.75
3609 4785 2.286872 CAGAATTCGAGCAGCCAATCT 58.713 47.619 0.00 0.00 0.00 2.40
3610 4786 1.332997 CCAGAATTCGAGCAGCCAATC 59.667 52.381 0.00 0.00 0.00 2.67
3611 4787 1.386533 CCAGAATTCGAGCAGCCAAT 58.613 50.000 0.00 0.00 0.00 3.16
3612 4788 1.308069 GCCAGAATTCGAGCAGCCAA 61.308 55.000 15.32 0.00 0.00 4.52
3613 4789 1.746615 GCCAGAATTCGAGCAGCCA 60.747 57.895 15.32 0.00 0.00 4.75
3614 4790 2.476320 GGCCAGAATTCGAGCAGCC 61.476 63.158 19.95 15.06 0.00 4.85
3615 4791 1.099879 ATGGCCAGAATTCGAGCAGC 61.100 55.000 13.05 10.91 0.00 5.25
3616 4792 1.065102 CAATGGCCAGAATTCGAGCAG 59.935 52.381 13.05 7.03 0.00 4.24
3617 4793 1.097232 CAATGGCCAGAATTCGAGCA 58.903 50.000 13.05 9.84 0.00 4.26
3618 4794 0.248784 GCAATGGCCAGAATTCGAGC 60.249 55.000 13.05 12.71 0.00 5.03
3619 4795 0.028505 CGCAATGGCCAGAATTCGAG 59.971 55.000 13.05 0.00 36.38 4.04
3620 4796 1.992233 GCGCAATGGCCAGAATTCGA 61.992 55.000 13.05 0.00 36.38 3.71
3621 4797 1.587088 GCGCAATGGCCAGAATTCG 60.587 57.895 13.05 11.21 36.38 3.34
3622 4798 4.407551 GCGCAATGGCCAGAATTC 57.592 55.556 13.05 0.00 36.38 2.17
3636 4812 1.707632 TTTGTTTGTATGCATGGCGC 58.292 45.000 10.16 0.00 42.89 6.53
3637 4813 2.667481 CCTTTTGTTTGTATGCATGGCG 59.333 45.455 10.16 0.00 0.00 5.69
3638 4814 3.924144 TCCTTTTGTTTGTATGCATGGC 58.076 40.909 10.16 2.61 0.00 4.40
3639 4815 5.722263 TGATCCTTTTGTTTGTATGCATGG 58.278 37.500 10.16 0.00 0.00 3.66
3640 4816 6.309494 CACTGATCCTTTTGTTTGTATGCATG 59.691 38.462 10.16 0.00 0.00 4.06
3641 4817 6.209192 TCACTGATCCTTTTGTTTGTATGCAT 59.791 34.615 3.79 3.79 0.00 3.96
3642 4818 5.534278 TCACTGATCCTTTTGTTTGTATGCA 59.466 36.000 0.00 0.00 0.00 3.96
3643 4819 6.012658 TCACTGATCCTTTTGTTTGTATGC 57.987 37.500 0.00 0.00 0.00 3.14
3644 4820 7.651808 ACTTCACTGATCCTTTTGTTTGTATG 58.348 34.615 0.00 0.00 0.00 2.39
3645 4821 7.823745 ACTTCACTGATCCTTTTGTTTGTAT 57.176 32.000 0.00 0.00 0.00 2.29
3646 4822 8.918202 ATACTTCACTGATCCTTTTGTTTGTA 57.082 30.769 0.00 0.00 0.00 2.41
3647 4823 7.040409 GGATACTTCACTGATCCTTTTGTTTGT 60.040 37.037 0.00 0.00 36.89 2.83
3648 4824 7.040478 TGGATACTTCACTGATCCTTTTGTTTG 60.040 37.037 0.00 0.00 39.98 2.93
3649 4825 7.004086 TGGATACTTCACTGATCCTTTTGTTT 58.996 34.615 0.00 0.00 39.98 2.83
3650 4826 6.542821 TGGATACTTCACTGATCCTTTTGTT 58.457 36.000 0.00 0.00 39.98 2.83
3651 4827 6.126863 TGGATACTTCACTGATCCTTTTGT 57.873 37.500 0.00 0.00 39.98 2.83
3652 4828 7.636150 AATGGATACTTCACTGATCCTTTTG 57.364 36.000 0.00 0.00 39.98 2.44
3653 4829 7.890127 TCAAATGGATACTTCACTGATCCTTTT 59.110 33.333 7.73 7.73 42.98 2.27
3654 4830 7.405292 TCAAATGGATACTTCACTGATCCTTT 58.595 34.615 0.00 0.00 39.98 3.11
3655 4831 6.962182 TCAAATGGATACTTCACTGATCCTT 58.038 36.000 0.00 0.00 39.98 3.36
3656 4832 6.566079 TCAAATGGATACTTCACTGATCCT 57.434 37.500 0.00 0.00 39.98 3.24
3657 4833 7.222872 AGATCAAATGGATACTTCACTGATCC 58.777 38.462 0.00 0.00 37.44 3.36
3658 4834 9.421806 CTAGATCAAATGGATACTTCACTGATC 57.578 37.037 0.00 0.00 37.23 2.92
3659 4835 8.932610 ACTAGATCAAATGGATACTTCACTGAT 58.067 33.333 0.00 0.00 36.00 2.90
3660 4836 8.311395 ACTAGATCAAATGGATACTTCACTGA 57.689 34.615 0.00 0.00 36.00 3.41
3661 4837 8.420222 AGACTAGATCAAATGGATACTTCACTG 58.580 37.037 0.00 0.00 36.00 3.66
3662 4838 8.546083 AGACTAGATCAAATGGATACTTCACT 57.454 34.615 0.00 0.00 36.00 3.41
3663 4839 9.606631 AAAGACTAGATCAAATGGATACTTCAC 57.393 33.333 0.00 0.00 36.00 3.18
3664 4840 9.823647 GAAAGACTAGATCAAATGGATACTTCA 57.176 33.333 0.00 0.00 36.00 3.02
3670 4846 9.745018 TTCAAAGAAAGACTAGATCAAATGGAT 57.255 29.630 0.00 0.00 39.53 3.41
3671 4847 9.745018 ATTCAAAGAAAGACTAGATCAAATGGA 57.255 29.630 0.00 0.00 0.00 3.41
3703 4879 9.171877 GAGGAAAAGATCAACTCATTGTTAGAT 57.828 33.333 0.00 0.00 37.07 1.98
3704 4880 7.607991 GGAGGAAAAGATCAACTCATTGTTAGA 59.392 37.037 0.00 0.00 37.07 2.10
3705 4881 7.609532 AGGAGGAAAAGATCAACTCATTGTTAG 59.390 37.037 0.00 0.00 37.07 2.34
3706 4882 7.391554 CAGGAGGAAAAGATCAACTCATTGTTA 59.608 37.037 0.00 0.00 37.07 2.41
3707 4883 6.208204 CAGGAGGAAAAGATCAACTCATTGTT 59.792 38.462 0.00 0.00 39.92 2.83
3708 4884 5.709164 CAGGAGGAAAAGATCAACTCATTGT 59.291 40.000 0.00 0.00 37.11 2.71
3709 4885 5.942236 TCAGGAGGAAAAGATCAACTCATTG 59.058 40.000 0.00 0.00 37.14 2.82
3710 4886 5.942826 GTCAGGAGGAAAAGATCAACTCATT 59.057 40.000 0.00 0.00 0.00 2.57
3711 4887 5.013495 TGTCAGGAGGAAAAGATCAACTCAT 59.987 40.000 0.00 0.00 0.00 2.90
3712 4888 4.347876 TGTCAGGAGGAAAAGATCAACTCA 59.652 41.667 0.00 0.00 0.00 3.41
3713 4889 4.899502 TGTCAGGAGGAAAAGATCAACTC 58.100 43.478 0.00 0.00 0.00 3.01
3714 4890 4.982241 TGTCAGGAGGAAAAGATCAACT 57.018 40.909 0.00 0.00 0.00 3.16
3715 4891 5.123027 GTGATGTCAGGAGGAAAAGATCAAC 59.877 44.000 0.00 0.00 0.00 3.18
3716 4892 5.248640 GTGATGTCAGGAGGAAAAGATCAA 58.751 41.667 0.00 0.00 0.00 2.57
3717 4893 4.323792 GGTGATGTCAGGAGGAAAAGATCA 60.324 45.833 0.00 0.00 0.00 2.92
3718 4894 4.195416 GGTGATGTCAGGAGGAAAAGATC 58.805 47.826 0.00 0.00 0.00 2.75
3719 4895 3.054065 GGGTGATGTCAGGAGGAAAAGAT 60.054 47.826 0.00 0.00 0.00 2.40
3720 4896 2.305927 GGGTGATGTCAGGAGGAAAAGA 59.694 50.000 0.00 0.00 0.00 2.52
3721 4897 2.040278 TGGGTGATGTCAGGAGGAAAAG 59.960 50.000 0.00 0.00 0.00 2.27
3722 4898 2.061848 TGGGTGATGTCAGGAGGAAAA 58.938 47.619 0.00 0.00 0.00 2.29
3723 4899 1.741028 TGGGTGATGTCAGGAGGAAA 58.259 50.000 0.00 0.00 0.00 3.13
3724 4900 1.561076 CATGGGTGATGTCAGGAGGAA 59.439 52.381 0.00 0.00 0.00 3.36
3725 4901 1.206878 CATGGGTGATGTCAGGAGGA 58.793 55.000 0.00 0.00 0.00 3.71
3726 4902 0.465097 GCATGGGTGATGTCAGGAGG 60.465 60.000 0.00 0.00 34.14 4.30
3727 4903 0.812811 CGCATGGGTGATGTCAGGAG 60.813 60.000 0.68 0.00 34.14 3.69
3728 4904 1.221566 CGCATGGGTGATGTCAGGA 59.778 57.895 0.68 0.00 34.14 3.86
3729 4905 1.078214 ACGCATGGGTGATGTCAGG 60.078 57.895 15.49 0.00 34.14 3.86
3730 4906 0.391528 TCACGCATGGGTGATGTCAG 60.392 55.000 34.25 13.51 41.76 3.51
3731 4907 1.676384 TCACGCATGGGTGATGTCA 59.324 52.632 34.25 17.34 41.76 3.58
3732 4908 4.615901 TCACGCATGGGTGATGTC 57.384 55.556 34.25 0.00 41.76 3.06
3737 4913 3.565063 TGATTATTGATCACGCATGGGTG 59.435 43.478 31.17 31.17 39.83 4.61
3738 4914 3.819368 TGATTATTGATCACGCATGGGT 58.181 40.909 10.03 10.03 39.83 4.51
3748 4924 8.655092 CGCTTCTTCTCCTTATGATTATTGATC 58.345 37.037 0.00 0.00 35.21 2.92
3749 4925 7.605691 CCGCTTCTTCTCCTTATGATTATTGAT 59.394 37.037 0.00 0.00 0.00 2.57
3750 4926 6.931281 CCGCTTCTTCTCCTTATGATTATTGA 59.069 38.462 0.00 0.00 0.00 2.57
3751 4927 6.348050 GCCGCTTCTTCTCCTTATGATTATTG 60.348 42.308 0.00 0.00 0.00 1.90
3752 4928 5.703130 GCCGCTTCTTCTCCTTATGATTATT 59.297 40.000 0.00 0.00 0.00 1.40
3753 4929 5.241662 GCCGCTTCTTCTCCTTATGATTAT 58.758 41.667 0.00 0.00 0.00 1.28
3754 4930 4.632153 GCCGCTTCTTCTCCTTATGATTA 58.368 43.478 0.00 0.00 0.00 1.75
3755 4931 3.471680 GCCGCTTCTTCTCCTTATGATT 58.528 45.455 0.00 0.00 0.00 2.57
3756 4932 2.546795 CGCCGCTTCTTCTCCTTATGAT 60.547 50.000 0.00 0.00 0.00 2.45
3757 4933 1.202417 CGCCGCTTCTTCTCCTTATGA 60.202 52.381 0.00 0.00 0.00 2.15
3758 4934 1.202417 TCGCCGCTTCTTCTCCTTATG 60.202 52.381 0.00 0.00 0.00 1.90
3759 4935 1.112113 TCGCCGCTTCTTCTCCTTAT 58.888 50.000 0.00 0.00 0.00 1.73
3760 4936 0.892755 TTCGCCGCTTCTTCTCCTTA 59.107 50.000 0.00 0.00 0.00 2.69
3761 4937 0.034896 TTTCGCCGCTTCTTCTCCTT 59.965 50.000 0.00 0.00 0.00 3.36
3762 4938 0.390472 CTTTCGCCGCTTCTTCTCCT 60.390 55.000 0.00 0.00 0.00 3.69
3763 4939 1.362406 CCTTTCGCCGCTTCTTCTCC 61.362 60.000 0.00 0.00 0.00 3.71
3764 4940 1.362406 CCCTTTCGCCGCTTCTTCTC 61.362 60.000 0.00 0.00 0.00 2.87
3765 4941 1.376037 CCCTTTCGCCGCTTCTTCT 60.376 57.895 0.00 0.00 0.00 2.85
3766 4942 1.375523 TCCCTTTCGCCGCTTCTTC 60.376 57.895 0.00 0.00 0.00 2.87
3767 4943 1.671379 GTCCCTTTCGCCGCTTCTT 60.671 57.895 0.00 0.00 0.00 2.52
3768 4944 2.047179 GTCCCTTTCGCCGCTTCT 60.047 61.111 0.00 0.00 0.00 2.85
3769 4945 2.358247 TGTCCCTTTCGCCGCTTC 60.358 61.111 0.00 0.00 0.00 3.86
3770 4946 2.668550 GTGTCCCTTTCGCCGCTT 60.669 61.111 0.00 0.00 0.00 4.68
3771 4947 4.699522 GGTGTCCCTTTCGCCGCT 62.700 66.667 0.00 0.00 0.00 5.52
3772 4948 4.699522 AGGTGTCCCTTTCGCCGC 62.700 66.667 0.00 0.00 38.13 6.53
3773 4949 2.434359 GAGGTGTCCCTTTCGCCG 60.434 66.667 0.00 0.00 42.86 6.46
3774 4950 2.434359 CGAGGTGTCCCTTTCGCC 60.434 66.667 0.00 0.00 42.86 5.54
3775 4951 3.119096 GCGAGGTGTCCCTTTCGC 61.119 66.667 1.85 1.85 43.92 4.70
3776 4952 1.446272 GAGCGAGGTGTCCCTTTCG 60.446 63.158 0.00 0.00 42.86 3.46
3777 4953 0.390472 CAGAGCGAGGTGTCCCTTTC 60.390 60.000 0.00 0.00 42.86 2.62
3778 4954 1.122019 ACAGAGCGAGGTGTCCCTTT 61.122 55.000 0.00 0.00 42.86 3.11
3779 4955 1.122019 AACAGAGCGAGGTGTCCCTT 61.122 55.000 0.00 0.00 42.86 3.95
3780 4956 1.534235 AACAGAGCGAGGTGTCCCT 60.534 57.895 0.00 0.00 46.66 4.20
3781 4957 1.079750 GAACAGAGCGAGGTGTCCC 60.080 63.158 0.00 0.00 0.00 4.46
3782 4958 0.389166 CAGAACAGAGCGAGGTGTCC 60.389 60.000 0.00 0.00 0.00 4.02
3783 4959 0.598562 TCAGAACAGAGCGAGGTGTC 59.401 55.000 0.00 0.00 0.00 3.67
3784 4960 1.203523 GATCAGAACAGAGCGAGGTGT 59.796 52.381 0.00 0.00 0.00 4.16
3785 4961 1.919918 GATCAGAACAGAGCGAGGTG 58.080 55.000 0.00 0.00 0.00 4.00
3791 4967 0.108424 ACCAGCGATCAGAACAGAGC 60.108 55.000 0.00 0.00 0.00 4.09
3792 4968 2.266554 GAACCAGCGATCAGAACAGAG 58.733 52.381 0.00 0.00 0.00 3.35
3793 4969 2.370281 GAACCAGCGATCAGAACAGA 57.630 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.