Multiple sequence alignment - TraesCS7D01G518500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G518500 chr7D 100.000 4073 0 0 1 4073 617020298 617016226 0.000000e+00 7522.0
1 TraesCS7D01G518500 chr7D 76.603 936 139 34 1023 1911 617645661 617644759 3.740000e-120 442.0
2 TraesCS7D01G518500 chr7D 78.451 594 90 21 1352 1929 617637360 617637931 1.800000e-93 353.0
3 TraesCS7D01G518500 chr7D 81.818 132 16 2 174 305 617646877 617646754 2.000000e-18 104.0
4 TraesCS7D01G518500 chr7D 83.750 80 5 1 502 573 616775218 616775139 7.310000e-08 69.4
5 TraesCS7D01G518500 chr7D 87.097 62 5 3 2689 2749 42800336 42800277 2.630000e-07 67.6
6 TraesCS7D01G518500 chr7B 94.020 2040 78 15 54 2063 711064152 711062127 0.000000e+00 3051.0
7 TraesCS7D01G518500 chr7B 92.033 1318 69 18 2067 3378 711062074 711060787 0.000000e+00 1820.0
8 TraesCS7D01G518500 chr7B 94.521 365 16 4 3376 3738 711060718 711060356 9.890000e-156 560.0
9 TraesCS7D01G518500 chr7B 77.968 935 126 38 1023 1912 711723025 711722126 2.810000e-141 512.0
10 TraesCS7D01G518500 chr7B 83.621 232 33 5 3748 3978 243255639 243255866 3.190000e-51 213.0
11 TraesCS7D01G518500 chr7B 82.479 234 36 5 3748 3978 627032019 627032250 2.480000e-47 200.0
12 TraesCS7D01G518500 chr7B 98.214 56 1 0 1 56 711064337 711064282 9.320000e-17 99.0
13 TraesCS7D01G518500 chr7A 80.659 1365 157 51 2467 3752 709732939 709731603 0.000000e+00 959.0
14 TraesCS7D01G518500 chr7A 84.339 696 90 11 1313 1994 709734152 709733462 0.000000e+00 664.0
15 TraesCS7D01G518500 chr7A 91.640 311 24 2 29 338 709735349 709735040 2.910000e-116 429.0
16 TraesCS7D01G518500 chr7A 83.646 373 46 6 952 1313 709734552 709734184 1.810000e-88 337.0
17 TraesCS7D01G518500 chr6D 86.694 248 28 4 3747 3991 423490772 423490527 1.870000e-68 270.0
18 TraesCS7D01G518500 chr6D 82.684 231 36 4 3751 3979 423489328 423489556 6.900000e-48 202.0
19 TraesCS7D01G518500 chr6A 85.887 248 32 2 3746 3991 53941575 53941821 1.120000e-65 261.0
20 TraesCS7D01G518500 chr6B 86.957 230 27 2 3755 3982 102172064 102171836 5.220000e-64 255.0
21 TraesCS7D01G518500 chr6B 90.698 43 4 0 1021 1063 201909638 201909680 1.580000e-04 58.4
22 TraesCS7D01G518500 chr4D 84.536 194 22 7 3750 3938 42204900 42205090 6.950000e-43 185.0
23 TraesCS7D01G518500 chr4D 85.057 174 20 5 3791 3959 6250913 6250741 5.410000e-39 172.0
24 TraesCS7D01G518500 chr4D 91.837 49 3 1 2689 2737 397094285 397094238 2.630000e-07 67.6
25 TraesCS7D01G518500 chr4D 90.698 43 4 0 1021 1063 12090874 12090916 1.580000e-04 58.4
26 TraesCS7D01G518500 chr4B 81.218 197 32 5 3749 3943 579622527 579622720 1.960000e-33 154.0
27 TraesCS7D01G518500 chr4B 89.130 46 5 0 1021 1066 624389657 624389612 1.580000e-04 58.4
28 TraesCS7D01G518500 chr1B 85.417 144 21 0 1369 1512 18421191 18421048 2.540000e-32 150.0
29 TraesCS7D01G518500 chr1A 83.333 144 24 0 1369 1512 14506196 14506339 2.550000e-27 134.0
30 TraesCS7D01G518500 chr1A 90.698 43 2 2 1239 1281 229170535 229170495 5.690000e-04 56.5
31 TraesCS7D01G518500 chr4A 89.362 47 5 0 1016 1062 11171477 11171523 4.400000e-05 60.2
32 TraesCS7D01G518500 chrUn 90.698 43 4 0 1021 1063 361664242 361664284 1.580000e-04 58.4
33 TraesCS7D01G518500 chr5D 90.698 43 4 0 1021 1063 535014099 535014057 1.580000e-04 58.4
34 TraesCS7D01G518500 chr3D 90.698 43 4 0 1021 1063 554683092 554683050 1.580000e-04 58.4
35 TraesCS7D01G518500 chr1D 90.698 43 4 0 1021 1063 460289407 460289449 1.580000e-04 58.4
36 TraesCS7D01G518500 chr1D 94.595 37 1 1 1239 1275 171163722 171163687 5.690000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G518500 chr7D 617016226 617020298 4072 True 7522.00 7522 100.0000 1 4073 1 chr7D.!!$R3 4072
1 TraesCS7D01G518500 chr7D 617637360 617637931 571 False 353.00 353 78.4510 1352 1929 1 chr7D.!!$F1 577
2 TraesCS7D01G518500 chr7D 617644759 617646877 2118 True 273.00 442 79.2105 174 1911 2 chr7D.!!$R4 1737
3 TraesCS7D01G518500 chr7B 711060356 711064337 3981 True 1382.50 3051 94.6970 1 3738 4 chr7B.!!$R2 3737
4 TraesCS7D01G518500 chr7B 711722126 711723025 899 True 512.00 512 77.9680 1023 1912 1 chr7B.!!$R1 889
5 TraesCS7D01G518500 chr7A 709731603 709735349 3746 True 597.25 959 85.0710 29 3752 4 chr7A.!!$R1 3723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 618 0.756294 ACACTGGTGGTCACATCGAA 59.244 50.0 5.7 0.0 34.19 3.71 F
949 1671 0.895559 CCTGCTTCAGTTTGGGGGTC 60.896 60.0 0.0 0.0 0.00 4.46 F
2545 3548 1.165270 GGTCAATCCAAGGTGGTTCG 58.835 55.0 0.0 0.0 39.03 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2909 0.178767 TCAGCGATACCAAGCATGCT 59.821 50.0 16.30 16.30 35.48 3.79 R
2721 3733 0.109153 ACAACATCTCCAGCAGCACA 59.891 50.0 0.00 0.00 0.00 4.57 R
4033 5196 0.097325 TGTGTTCGCGAACCACAAAC 59.903 50.0 40.08 31.75 40.46 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 272 5.237048 CCTTTCCATATTGTTTTGGTGGTG 58.763 41.667 0.00 0.00 34.48 4.17
256 397 1.881925 CGTTCTTTGGCCATCACTCCA 60.882 52.381 6.09 0.00 0.00 3.86
321 462 3.057019 ACATTGTACTATGTATGCGCCG 58.943 45.455 19.39 0.00 36.99 6.46
348 617 1.623163 TACACTGGTGGTCACATCGA 58.377 50.000 5.70 0.00 34.19 3.59
349 618 0.756294 ACACTGGTGGTCACATCGAA 59.244 50.000 5.70 0.00 34.19 3.71
350 619 1.347707 ACACTGGTGGTCACATCGAAT 59.652 47.619 5.70 0.00 34.19 3.34
351 620 1.733912 CACTGGTGGTCACATCGAATG 59.266 52.381 3.40 0.00 0.00 2.67
352 621 1.623311 ACTGGTGGTCACATCGAATGA 59.377 47.619 3.40 0.00 0.00 2.57
477 1164 7.412672 CGGAATTAACAAAGGTCAACTAGCTAC 60.413 40.741 0.00 0.00 33.87 3.58
496 1183 1.229428 CGATGGATGTACACATGGGC 58.771 55.000 0.00 0.00 36.57 5.36
626 1336 4.313282 AGTCCATGATAATGTGATCGCAG 58.687 43.478 15.24 0.00 0.00 5.18
790 1509 5.298347 GCTTGTTGTAGTAGTTGAGGAGTT 58.702 41.667 0.00 0.00 0.00 3.01
832 1551 4.836125 CACCTCTTTGTGCATGTTTAGT 57.164 40.909 0.00 0.00 0.00 2.24
833 1552 4.787598 CACCTCTTTGTGCATGTTTAGTC 58.212 43.478 0.00 0.00 0.00 2.59
834 1553 4.275689 CACCTCTTTGTGCATGTTTAGTCA 59.724 41.667 0.00 0.00 0.00 3.41
835 1554 4.516698 ACCTCTTTGTGCATGTTTAGTCAG 59.483 41.667 0.00 0.00 0.00 3.51
838 1557 6.347725 CCTCTTTGTGCATGTTTAGTCAGTAC 60.348 42.308 0.00 0.00 0.00 2.73
880 1601 2.882927 ACGCGTTCAGATGGCTATAA 57.117 45.000 5.58 0.00 0.00 0.98
884 1605 5.294356 ACGCGTTCAGATGGCTATAATAAA 58.706 37.500 5.58 0.00 0.00 1.40
949 1671 0.895559 CCTGCTTCAGTTTGGGGGTC 60.896 60.000 0.00 0.00 0.00 4.46
1104 1863 1.885163 CGGCCACTAGGAACTTCCGT 61.885 60.000 2.24 0.00 42.75 4.69
1113 1872 1.664306 GAACTTCCGTCCGGACAGT 59.336 57.895 32.80 24.97 45.11 3.55
1284 2046 5.419542 GTCAGTGCTCACTACCAATCAATA 58.580 41.667 1.79 0.00 40.20 1.90
1319 2118 6.656693 TCATCTCTTCAGTTCTCCAAATTTCC 59.343 38.462 0.00 0.00 0.00 3.13
1549 2367 2.826428 TCTAGCGTTCCATTGATCAGC 58.174 47.619 0.00 0.00 0.00 4.26
1648 2482 1.367346 TGTAGGGGGCTCACATTTCA 58.633 50.000 0.00 0.00 0.00 2.69
1857 2702 6.539649 TTAATGCTAACTGTGTTGACTGAC 57.460 37.500 0.00 0.00 0.00 3.51
1858 2703 3.819564 TGCTAACTGTGTTGACTGACT 57.180 42.857 0.00 0.00 0.00 3.41
1868 2713 5.427378 TGTGTTGACTGACTGATTTCAGAA 58.573 37.500 14.29 1.77 45.19 3.02
1929 2774 1.342819 GGGCGAGCTGATGATAAGAGT 59.657 52.381 0.00 0.00 0.00 3.24
1980 2825 2.040278 TGGATATGCAGCCCCTGAATAC 59.960 50.000 0.00 0.00 35.11 1.89
2045 2891 5.597813 ACACAGAGCTTAATTTGTCTTCG 57.402 39.130 0.00 0.00 0.00 3.79
2063 2909 4.342092 TCTTCGAAGCCATGATCAGATGTA 59.658 41.667 20.56 0.00 0.00 2.29
2064 2910 4.248691 TCGAAGCCATGATCAGATGTAG 57.751 45.455 0.09 0.00 0.00 2.74
2065 2911 2.735663 CGAAGCCATGATCAGATGTAGC 59.264 50.000 0.09 0.00 0.00 3.58
2151 3086 4.573021 TGTCAGGGTTGAATGATGATGA 57.427 40.909 0.00 0.00 34.49 2.92
2152 3087 5.120054 TGTCAGGGTTGAATGATGATGAT 57.880 39.130 0.00 0.00 34.49 2.45
2153 3088 4.885325 TGTCAGGGTTGAATGATGATGATG 59.115 41.667 0.00 0.00 34.49 3.07
2196 3137 8.084985 TGGTATATGAACCACTATGAGACAAA 57.915 34.615 0.00 0.00 44.68 2.83
2301 3243 1.298014 GGCTTCAGACCTGACTGGG 59.702 63.158 3.15 0.00 39.66 4.45
2407 3349 6.445451 AGTAGCAGGTGATTGATCCATAAT 57.555 37.500 0.00 0.00 0.00 1.28
2476 3477 7.715249 ACTTGTTCTTTTAGTTGATGAGCTGTA 59.285 33.333 0.00 0.00 0.00 2.74
2529 3532 4.275936 GCATACACTAATCCATGTTGGGTC 59.724 45.833 0.00 0.00 38.32 4.46
2531 3534 4.380843 ACACTAATCCATGTTGGGTCAA 57.619 40.909 0.00 0.00 38.32 3.18
2532 3535 4.934356 ACACTAATCCATGTTGGGTCAAT 58.066 39.130 0.00 0.00 38.32 2.57
2533 3536 4.949856 ACACTAATCCATGTTGGGTCAATC 59.050 41.667 0.00 0.00 38.32 2.67
2535 3538 3.471430 AATCCATGTTGGGTCAATCCA 57.529 42.857 0.00 0.00 38.32 3.41
2537 3540 2.806434 TCCATGTTGGGTCAATCCAAG 58.194 47.619 0.00 0.00 46.28 3.61
2545 3548 1.165270 GGTCAATCCAAGGTGGTTCG 58.835 55.000 0.00 0.00 39.03 3.95
2563 3568 1.686587 TCGTTGTCTTCTCCTCTGCAA 59.313 47.619 0.00 0.00 0.00 4.08
2571 3576 3.056250 TCTTCTCCTCTGCAACATCTGAC 60.056 47.826 0.00 0.00 0.00 3.51
2650 3659 7.283625 AGTATCTAGTTGGACTGCTTATCTG 57.716 40.000 0.00 0.00 0.00 2.90
2672 3684 3.753797 GCTAGTCCTTTCTGAACCTTTGG 59.246 47.826 0.00 0.00 0.00 3.28
2694 3706 1.262417 TAACAGGGCATCTGACGACA 58.738 50.000 12.38 0.00 46.18 4.35
2772 3784 2.429930 CTGGACAAGAACCGGCCA 59.570 61.111 0.00 0.00 0.00 5.36
2923 3935 0.997932 GCTCAAGTGCATCTCTGTCG 59.002 55.000 0.00 0.00 0.00 4.35
3074 4104 2.125753 GCAGCAGCAGACGTAGCT 60.126 61.111 9.02 9.02 44.62 3.32
3197 4243 3.314635 GCTTGTTTAGGCAGGATGATGAG 59.685 47.826 0.00 0.00 39.69 2.90
3199 4245 4.574674 TGTTTAGGCAGGATGATGAGTT 57.425 40.909 0.00 0.00 39.69 3.01
3201 4247 4.019411 TGTTTAGGCAGGATGATGAGTTGA 60.019 41.667 0.00 0.00 39.69 3.18
3205 4251 2.877168 GGCAGGATGATGAGTTGATGAC 59.123 50.000 0.00 0.00 39.69 3.06
3207 4253 3.560481 GCAGGATGATGAGTTGATGACTG 59.440 47.826 0.00 0.00 39.69 3.51
3208 4254 4.127907 CAGGATGATGAGTTGATGACTGG 58.872 47.826 0.00 0.00 39.69 4.00
3210 4256 3.875727 GGATGATGAGTTGATGACTGGTG 59.124 47.826 0.00 0.00 39.19 4.17
3212 4258 2.905736 TGATGAGTTGATGACTGGTGGA 59.094 45.455 0.00 0.00 39.19 4.02
3213 4259 3.055602 TGATGAGTTGATGACTGGTGGAG 60.056 47.826 0.00 0.00 39.19 3.86
3216 4262 3.136443 TGAGTTGATGACTGGTGGAGTTT 59.864 43.478 0.00 0.00 39.19 2.66
3233 4299 4.521639 GGAGTTTTGGTTTCCCGTTAGAAT 59.478 41.667 0.00 0.00 0.00 2.40
3277 4344 7.718753 TGCAAAACTGTTTTATTTCCATGGATT 59.281 29.630 17.06 9.13 0.00 3.01
3306 4373 6.946009 TGATCAATGATGCATGGTAATCAGAT 59.054 34.615 2.46 0.00 36.31 2.90
3465 4623 9.296400 CACCGTTTCCAAATTGGTTATTTATAG 57.704 33.333 12.28 0.00 39.03 1.31
3480 4638 7.338449 GGTTATTTATAGCCCACAAGAAAGTCA 59.662 37.037 0.00 0.00 0.00 3.41
3602 4760 3.245443 ACACTATGGGTCTGACTCTGACT 60.245 47.826 9.42 0.37 33.75 3.41
3756 4919 9.256228 AGTATCTCATTACTGTTTAAGGAGTGA 57.744 33.333 5.27 0.00 36.88 3.41
3757 4920 9.871238 GTATCTCATTACTGTTTAAGGAGTGAA 57.129 33.333 5.27 0.00 35.19 3.18
3759 4922 7.963532 TCTCATTACTGTTTAAGGAGTGAAGT 58.036 34.615 5.27 0.00 35.19 3.01
3760 4923 7.872993 TCTCATTACTGTTTAAGGAGTGAAGTG 59.127 37.037 5.27 0.00 35.19 3.16
3761 4924 6.426937 TCATTACTGTTTAAGGAGTGAAGTGC 59.573 38.462 0.00 0.00 32.72 4.40
3762 4925 4.150897 ACTGTTTAAGGAGTGAAGTGCA 57.849 40.909 0.00 0.00 0.00 4.57
3763 4926 4.718961 ACTGTTTAAGGAGTGAAGTGCAT 58.281 39.130 0.00 0.00 0.00 3.96
3764 4927 5.133221 ACTGTTTAAGGAGTGAAGTGCATT 58.867 37.500 0.00 0.00 0.00 3.56
3765 4928 5.594317 ACTGTTTAAGGAGTGAAGTGCATTT 59.406 36.000 0.00 0.00 0.00 2.32
3766 4929 5.830912 TGTTTAAGGAGTGAAGTGCATTTG 58.169 37.500 0.00 0.00 0.00 2.32
3767 4930 5.359576 TGTTTAAGGAGTGAAGTGCATTTGT 59.640 36.000 0.00 0.00 0.00 2.83
3768 4931 6.127479 TGTTTAAGGAGTGAAGTGCATTTGTT 60.127 34.615 0.00 0.00 0.00 2.83
3769 4932 3.996150 AGGAGTGAAGTGCATTTGTTG 57.004 42.857 0.00 0.00 0.00 3.33
3770 4933 2.624838 AGGAGTGAAGTGCATTTGTTGG 59.375 45.455 0.00 0.00 0.00 3.77
3771 4934 2.362077 GGAGTGAAGTGCATTTGTTGGT 59.638 45.455 0.00 0.00 0.00 3.67
3772 4935 3.550842 GGAGTGAAGTGCATTTGTTGGTC 60.551 47.826 0.00 0.00 0.00 4.02
3773 4936 2.362077 AGTGAAGTGCATTTGTTGGTCC 59.638 45.455 0.00 0.00 0.00 4.46
3774 4937 1.686052 TGAAGTGCATTTGTTGGTCCC 59.314 47.619 0.00 0.00 0.00 4.46
3775 4938 1.963515 GAAGTGCATTTGTTGGTCCCT 59.036 47.619 0.00 0.00 0.00 4.20
3776 4939 2.969821 AGTGCATTTGTTGGTCCCTA 57.030 45.000 0.00 0.00 0.00 3.53
3777 4940 3.237268 AGTGCATTTGTTGGTCCCTAA 57.763 42.857 0.00 0.00 0.00 2.69
3778 4941 3.571590 AGTGCATTTGTTGGTCCCTAAA 58.428 40.909 0.00 0.00 0.00 1.85
3779 4942 3.320826 AGTGCATTTGTTGGTCCCTAAAC 59.679 43.478 0.00 0.00 0.00 2.01
3780 4943 3.320826 GTGCATTTGTTGGTCCCTAAACT 59.679 43.478 0.00 0.00 0.00 2.66
3781 4944 4.521256 GTGCATTTGTTGGTCCCTAAACTA 59.479 41.667 0.00 0.00 0.00 2.24
3782 4945 5.185056 GTGCATTTGTTGGTCCCTAAACTAT 59.815 40.000 0.00 0.00 0.00 2.12
3783 4946 5.777732 TGCATTTGTTGGTCCCTAAACTATT 59.222 36.000 0.00 0.00 0.00 1.73
3784 4947 6.268847 TGCATTTGTTGGTCCCTAAACTATTT 59.731 34.615 0.00 0.00 0.00 1.40
3785 4948 6.811665 GCATTTGTTGGTCCCTAAACTATTTC 59.188 38.462 0.00 0.00 0.00 2.17
3786 4949 7.524698 GCATTTGTTGGTCCCTAAACTATTTCA 60.525 37.037 0.00 0.00 0.00 2.69
3787 4950 8.531146 CATTTGTTGGTCCCTAAACTATTTCAT 58.469 33.333 0.00 0.00 0.00 2.57
3788 4951 7.461182 TTGTTGGTCCCTAAACTATTTCATG 57.539 36.000 0.00 0.00 0.00 3.07
3789 4952 6.785076 TGTTGGTCCCTAAACTATTTCATGA 58.215 36.000 0.00 0.00 0.00 3.07
3790 4953 6.884295 TGTTGGTCCCTAAACTATTTCATGAG 59.116 38.462 0.00 0.00 0.00 2.90
3791 4954 6.636454 TGGTCCCTAAACTATTTCATGAGT 57.364 37.500 0.00 0.00 0.00 3.41
3792 4955 6.414732 TGGTCCCTAAACTATTTCATGAGTG 58.585 40.000 0.00 0.00 0.00 3.51
3793 4956 6.012858 TGGTCCCTAAACTATTTCATGAGTGT 60.013 38.462 0.00 0.00 0.00 3.55
3794 4957 6.539103 GGTCCCTAAACTATTTCATGAGTGTC 59.461 42.308 0.00 0.00 0.00 3.67
3795 4958 7.103641 GTCCCTAAACTATTTCATGAGTGTCA 58.896 38.462 0.00 0.00 0.00 3.58
3796 4959 7.770897 GTCCCTAAACTATTTCATGAGTGTCAT 59.229 37.037 0.00 0.00 37.65 3.06
3807 4970 5.077134 CATGAGTGTCATGTAGGTTCTCA 57.923 43.478 8.48 0.00 46.80 3.27
3808 4971 5.482006 CATGAGTGTCATGTAGGTTCTCAA 58.518 41.667 8.48 0.00 46.80 3.02
3809 4972 5.545063 TGAGTGTCATGTAGGTTCTCAAA 57.455 39.130 0.00 0.00 0.00 2.69
3810 4973 5.297547 TGAGTGTCATGTAGGTTCTCAAAC 58.702 41.667 0.00 0.00 34.46 2.93
3811 4974 5.070446 TGAGTGTCATGTAGGTTCTCAAACT 59.930 40.000 0.00 0.00 35.61 2.66
3812 4975 6.266786 TGAGTGTCATGTAGGTTCTCAAACTA 59.733 38.462 0.00 0.00 35.61 2.24
3813 4976 7.039011 TGAGTGTCATGTAGGTTCTCAAACTAT 60.039 37.037 0.00 0.00 35.61 2.12
3814 4977 7.099764 AGTGTCATGTAGGTTCTCAAACTATG 58.900 38.462 0.00 0.00 35.61 2.23
3815 4978 7.039011 AGTGTCATGTAGGTTCTCAAACTATGA 60.039 37.037 0.00 0.00 35.61 2.15
3816 4979 7.602644 GTGTCATGTAGGTTCTCAAACTATGAA 59.397 37.037 0.00 0.00 37.67 2.57
3817 4980 8.154203 TGTCATGTAGGTTCTCAAACTATGAAA 58.846 33.333 0.00 0.00 37.67 2.69
3818 4981 8.999431 GTCATGTAGGTTCTCAAACTATGAAAA 58.001 33.333 0.00 0.00 37.67 2.29
3819 4982 9.739276 TCATGTAGGTTCTCAAACTATGAAAAT 57.261 29.630 0.00 0.00 37.67 1.82
3820 4983 9.994432 CATGTAGGTTCTCAAACTATGAAAATC 57.006 33.333 0.00 0.00 37.67 2.17
3821 4984 8.251750 TGTAGGTTCTCAAACTATGAAAATCG 57.748 34.615 0.00 0.00 37.67 3.34
3822 4985 6.743575 AGGTTCTCAAACTATGAAAATCGG 57.256 37.500 0.00 0.00 37.67 4.18
3823 4986 5.123979 AGGTTCTCAAACTATGAAAATCGGC 59.876 40.000 0.00 0.00 37.67 5.54
3824 4987 5.106317 GGTTCTCAAACTATGAAAATCGGCA 60.106 40.000 0.00 0.00 37.67 5.69
3825 4988 6.404734 GGTTCTCAAACTATGAAAATCGGCAT 60.405 38.462 0.00 0.00 37.67 4.40
3826 4989 6.363577 TCTCAAACTATGAAAATCGGCATC 57.636 37.500 0.00 0.00 37.67 3.91
3827 4990 6.115446 TCTCAAACTATGAAAATCGGCATCT 58.885 36.000 0.00 0.00 37.67 2.90
3828 4991 7.272244 TCTCAAACTATGAAAATCGGCATCTA 58.728 34.615 0.00 0.00 37.67 1.98
3829 4992 7.439356 TCTCAAACTATGAAAATCGGCATCTAG 59.561 37.037 0.00 0.00 37.67 2.43
3830 4993 6.483307 TCAAACTATGAAAATCGGCATCTAGG 59.517 38.462 0.00 0.00 34.30 3.02
3831 4994 5.552870 ACTATGAAAATCGGCATCTAGGT 57.447 39.130 0.00 0.00 0.00 3.08
3832 4995 5.542779 ACTATGAAAATCGGCATCTAGGTC 58.457 41.667 0.00 0.00 0.00 3.85
3833 4996 3.194005 TGAAAATCGGCATCTAGGTCC 57.806 47.619 0.00 0.00 0.00 4.46
3834 4997 2.771943 TGAAAATCGGCATCTAGGTCCT 59.228 45.455 0.00 0.00 0.00 3.85
3835 4998 3.181465 TGAAAATCGGCATCTAGGTCCTC 60.181 47.826 0.00 0.00 0.00 3.71
3836 4999 0.962489 AATCGGCATCTAGGTCCTCG 59.038 55.000 0.00 0.00 0.00 4.63
3837 5000 0.110678 ATCGGCATCTAGGTCCTCGA 59.889 55.000 0.00 0.00 0.00 4.04
3838 5001 0.106868 TCGGCATCTAGGTCCTCGAA 60.107 55.000 0.00 0.00 0.00 3.71
3839 5002 0.312416 CGGCATCTAGGTCCTCGAAG 59.688 60.000 0.00 0.00 0.00 3.79
3840 5003 1.404843 GGCATCTAGGTCCTCGAAGT 58.595 55.000 0.00 0.00 0.00 3.01
3841 5004 1.067821 GGCATCTAGGTCCTCGAAGTG 59.932 57.143 0.00 0.00 0.00 3.16
3842 5005 1.537135 GCATCTAGGTCCTCGAAGTGC 60.537 57.143 0.00 0.00 0.00 4.40
3843 5006 1.751351 CATCTAGGTCCTCGAAGTGCA 59.249 52.381 0.00 0.00 0.00 4.57
3844 5007 1.464734 TCTAGGTCCTCGAAGTGCAG 58.535 55.000 0.00 0.00 0.00 4.41
3845 5008 1.178276 CTAGGTCCTCGAAGTGCAGT 58.822 55.000 0.00 0.00 0.00 4.40
3846 5009 2.026542 TCTAGGTCCTCGAAGTGCAGTA 60.027 50.000 0.00 0.00 0.00 2.74
3847 5010 1.629043 AGGTCCTCGAAGTGCAGTAA 58.371 50.000 0.00 0.00 0.00 2.24
3848 5011 1.546476 AGGTCCTCGAAGTGCAGTAAG 59.454 52.381 0.00 0.00 0.00 2.34
3849 5012 1.272769 GGTCCTCGAAGTGCAGTAAGT 59.727 52.381 0.00 0.00 0.00 2.24
3850 5013 2.329379 GTCCTCGAAGTGCAGTAAGTG 58.671 52.381 0.00 0.00 0.00 3.16
3851 5014 1.961394 TCCTCGAAGTGCAGTAAGTGT 59.039 47.619 0.00 0.00 0.00 3.55
3852 5015 2.061773 CCTCGAAGTGCAGTAAGTGTG 58.938 52.381 0.00 0.00 0.00 3.82
3853 5016 2.545952 CCTCGAAGTGCAGTAAGTGTGT 60.546 50.000 0.00 0.00 0.00 3.72
3854 5017 3.123804 CTCGAAGTGCAGTAAGTGTGTT 58.876 45.455 0.00 0.00 0.00 3.32
3855 5018 4.295870 CTCGAAGTGCAGTAAGTGTGTTA 58.704 43.478 0.00 0.00 0.00 2.41
3856 5019 4.878439 TCGAAGTGCAGTAAGTGTGTTAT 58.122 39.130 0.00 0.00 0.00 1.89
3857 5020 5.294356 TCGAAGTGCAGTAAGTGTGTTATT 58.706 37.500 0.00 0.00 0.00 1.40
3858 5021 5.756347 TCGAAGTGCAGTAAGTGTGTTATTT 59.244 36.000 0.00 0.00 0.00 1.40
3859 5022 5.845953 CGAAGTGCAGTAAGTGTGTTATTTG 59.154 40.000 0.00 0.00 0.00 2.32
3860 5023 5.689383 AGTGCAGTAAGTGTGTTATTTGG 57.311 39.130 0.00 0.00 0.00 3.28
3861 5024 4.518970 AGTGCAGTAAGTGTGTTATTTGGG 59.481 41.667 0.00 0.00 0.00 4.12
3862 5025 4.277423 GTGCAGTAAGTGTGTTATTTGGGT 59.723 41.667 0.00 0.00 0.00 4.51
3863 5026 4.517453 TGCAGTAAGTGTGTTATTTGGGTC 59.483 41.667 0.00 0.00 0.00 4.46
3864 5027 4.082949 GCAGTAAGTGTGTTATTTGGGTCC 60.083 45.833 0.00 0.00 0.00 4.46
3865 5028 5.067273 CAGTAAGTGTGTTATTTGGGTCCA 58.933 41.667 0.00 0.00 0.00 4.02
3866 5029 5.533154 CAGTAAGTGTGTTATTTGGGTCCAA 59.467 40.000 0.00 0.00 0.00 3.53
3879 5042 4.028993 TGGGTCCAAAATCTGTCTAACC 57.971 45.455 0.00 0.00 0.00 2.85
3880 5043 3.245122 TGGGTCCAAAATCTGTCTAACCC 60.245 47.826 0.00 0.00 44.40 4.11
3881 5044 3.010250 GGGTCCAAAATCTGTCTAACCCT 59.990 47.826 0.00 0.00 41.55 4.34
3882 5045 4.010349 GGTCCAAAATCTGTCTAACCCTG 58.990 47.826 0.00 0.00 0.00 4.45
3883 5046 3.440522 GTCCAAAATCTGTCTAACCCTGC 59.559 47.826 0.00 0.00 0.00 4.85
3884 5047 2.755103 CCAAAATCTGTCTAACCCTGCC 59.245 50.000 0.00 0.00 0.00 4.85
3885 5048 3.562176 CCAAAATCTGTCTAACCCTGCCT 60.562 47.826 0.00 0.00 0.00 4.75
3886 5049 3.356529 AAATCTGTCTAACCCTGCCTG 57.643 47.619 0.00 0.00 0.00 4.85
3887 5050 2.254152 ATCTGTCTAACCCTGCCTGA 57.746 50.000 0.00 0.00 0.00 3.86
3888 5051 1.267121 TCTGTCTAACCCTGCCTGAC 58.733 55.000 0.00 0.00 0.00 3.51
3889 5052 0.250513 CTGTCTAACCCTGCCTGACC 59.749 60.000 0.00 0.00 0.00 4.02
3890 5053 1.218316 GTCTAACCCTGCCTGACCG 59.782 63.158 0.00 0.00 0.00 4.79
3891 5054 1.987855 TCTAACCCTGCCTGACCGG 60.988 63.158 0.00 0.00 0.00 5.28
3900 5063 4.335647 CCTGACCGGCCAGCTGTT 62.336 66.667 13.04 0.00 32.97 3.16
3901 5064 3.052082 CTGACCGGCCAGCTGTTG 61.052 66.667 13.81 0.00 0.00 3.33
3912 5075 2.639286 GCTGTTGCTGTTGACCCG 59.361 61.111 0.00 0.00 36.03 5.28
3913 5076 2.186826 GCTGTTGCTGTTGACCCGT 61.187 57.895 0.00 0.00 36.03 5.28
3914 5077 1.648720 CTGTTGCTGTTGACCCGTG 59.351 57.895 0.00 0.00 0.00 4.94
3915 5078 1.785041 CTGTTGCTGTTGACCCGTGG 61.785 60.000 0.00 0.00 0.00 4.94
3916 5079 2.904866 TTGCTGTTGACCCGTGGC 60.905 61.111 0.00 0.00 0.00 5.01
3917 5080 3.705934 TTGCTGTTGACCCGTGGCA 62.706 57.895 0.00 0.00 0.00 4.92
3918 5081 3.660111 GCTGTTGACCCGTGGCAC 61.660 66.667 7.79 7.79 0.00 5.01
3919 5082 3.345808 CTGTTGACCCGTGGCACG 61.346 66.667 31.78 31.78 42.11 5.34
3920 5083 4.164087 TGTTGACCCGTGGCACGT 62.164 61.111 34.74 20.47 40.58 4.49
3921 5084 3.343421 GTTGACCCGTGGCACGTC 61.343 66.667 34.74 26.99 40.58 4.34
3922 5085 4.953868 TTGACCCGTGGCACGTCG 62.954 66.667 34.74 26.47 40.58 5.12
3928 5091 2.278596 CGTGGCACGTCGGATAGG 60.279 66.667 30.56 0.03 36.74 2.57
3929 5092 2.106332 GTGGCACGTCGGATAGGG 59.894 66.667 0.00 0.00 0.00 3.53
3930 5093 3.151710 TGGCACGTCGGATAGGGG 61.152 66.667 0.00 0.00 0.00 4.79
3931 5094 4.603946 GGCACGTCGGATAGGGGC 62.604 72.222 0.00 0.00 41.81 5.80
3932 5095 4.603946 GCACGTCGGATAGGGGCC 62.604 72.222 0.00 0.00 36.35 5.80
3933 5096 3.925090 CACGTCGGATAGGGGCCC 61.925 72.222 17.12 17.12 0.00 5.80
3934 5097 4.468769 ACGTCGGATAGGGGCCCA 62.469 66.667 27.72 11.59 0.00 5.36
3935 5098 3.925090 CGTCGGATAGGGGCCCAC 61.925 72.222 27.72 13.61 0.00 4.61
3936 5099 2.766651 GTCGGATAGGGGCCCACA 60.767 66.667 27.72 12.99 0.00 4.17
3937 5100 2.041430 TCGGATAGGGGCCCACAA 59.959 61.111 27.72 10.38 0.00 3.33
3938 5101 2.070039 TCGGATAGGGGCCCACAAG 61.070 63.158 27.72 12.01 0.00 3.16
3939 5102 2.927056 GGATAGGGGCCCACAAGG 59.073 66.667 27.72 0.00 39.47 3.61
3940 5103 2.006991 GGATAGGGGCCCACAAGGT 61.007 63.158 27.72 4.91 38.26 3.50
3941 5104 0.696485 GGATAGGGGCCCACAAGGTA 60.696 60.000 27.72 7.47 38.26 3.08
3942 5105 1.218844 GATAGGGGCCCACAAGGTAA 58.781 55.000 27.72 0.00 38.26 2.85
3943 5106 1.780919 GATAGGGGCCCACAAGGTAAT 59.219 52.381 27.72 2.27 38.26 1.89
3944 5107 0.923358 TAGGGGCCCACAAGGTAATG 59.077 55.000 27.72 0.00 38.26 1.90
3945 5108 1.381191 GGGGCCCACAAGGTAATGG 60.381 63.158 26.86 0.00 38.26 3.16
3946 5109 2.058001 GGGCCCACAAGGTAATGGC 61.058 63.158 19.95 0.00 41.42 4.40
3947 5110 3.616086 GCCCACAAGGTAATGGCC 58.384 61.111 0.00 0.00 38.26 5.36
3948 5111 2.414785 GCCCACAAGGTAATGGCCG 61.415 63.158 0.00 0.00 38.26 6.13
3949 5112 1.301623 CCCACAAGGTAATGGCCGA 59.698 57.895 0.00 0.00 34.37 5.54
3950 5113 0.106719 CCCACAAGGTAATGGCCGAT 60.107 55.000 0.00 0.00 34.37 4.18
3951 5114 1.024271 CCACAAGGTAATGGCCGATG 58.976 55.000 0.00 0.00 0.00 3.84
3952 5115 1.408127 CCACAAGGTAATGGCCGATGA 60.408 52.381 0.00 0.00 0.00 2.92
3953 5116 1.670811 CACAAGGTAATGGCCGATGAC 59.329 52.381 0.00 0.00 0.00 3.06
3954 5117 0.937304 CAAGGTAATGGCCGATGACG 59.063 55.000 0.00 0.00 39.43 4.35
3972 5135 8.506140 CGATGACGGAAATATGCAAATAAATT 57.494 30.769 0.00 0.00 35.72 1.82
3973 5136 8.629986 CGATGACGGAAATATGCAAATAAATTC 58.370 33.333 0.00 0.00 35.72 2.17
3974 5137 9.462174 GATGACGGAAATATGCAAATAAATTCA 57.538 29.630 0.00 0.00 0.00 2.57
3975 5138 9.814899 ATGACGGAAATATGCAAATAAATTCAA 57.185 25.926 0.00 0.00 0.00 2.69
3976 5139 9.645059 TGACGGAAATATGCAAATAAATTCAAA 57.355 25.926 0.00 0.00 0.00 2.69
3994 5157 9.844257 AAATTCAAATAAATTCCAAGGAACACA 57.156 25.926 3.19 0.00 36.91 3.72
3997 5160 9.844257 TTCAAATAAATTCCAAGGAACACATTT 57.156 25.926 3.19 7.02 36.91 2.32
3998 5161 9.844257 TCAAATAAATTCCAAGGAACACATTTT 57.156 25.926 3.19 3.48 36.91 1.82
4000 5163 9.844257 AAATAAATTCCAAGGAACACATTTTCA 57.156 25.926 3.19 0.00 36.91 2.69
4001 5164 9.844257 AATAAATTCCAAGGAACACATTTTCAA 57.156 25.926 3.19 0.00 36.91 2.69
4002 5165 9.844257 ATAAATTCCAAGGAACACATTTTCAAA 57.156 25.926 3.19 0.00 36.91 2.69
4003 5166 8.572855 AAATTCCAAGGAACACATTTTCAAAA 57.427 26.923 3.19 0.00 36.91 2.44
4004 5167 8.750515 AATTCCAAGGAACACATTTTCAAAAT 57.249 26.923 3.19 0.00 36.91 1.82
4005 5168 8.750515 ATTCCAAGGAACACATTTTCAAAATT 57.249 26.923 3.19 0.00 36.91 1.82
4006 5169 7.784633 TCCAAGGAACACATTTTCAAAATTC 57.215 32.000 0.00 0.00 0.00 2.17
4007 5170 7.563906 TCCAAGGAACACATTTTCAAAATTCT 58.436 30.769 0.00 0.00 0.00 2.40
4008 5171 8.700051 TCCAAGGAACACATTTTCAAAATTCTA 58.300 29.630 0.00 0.00 0.00 2.10
4009 5172 8.981647 CCAAGGAACACATTTTCAAAATTCTAG 58.018 33.333 0.00 0.00 0.00 2.43
4010 5173 9.533253 CAAGGAACACATTTTCAAAATTCTAGT 57.467 29.630 0.00 0.00 0.00 2.57
4011 5174 9.533253 AAGGAACACATTTTCAAAATTCTAGTG 57.467 29.630 8.72 8.72 0.00 2.74
4012 5175 7.653311 AGGAACACATTTTCAAAATTCTAGTGC 59.347 33.333 9.78 0.00 0.00 4.40
4013 5176 6.991485 ACACATTTTCAAAATTCTAGTGCG 57.009 33.333 9.78 0.00 0.00 5.34
4014 5177 5.402270 ACACATTTTCAAAATTCTAGTGCGC 59.598 36.000 0.00 0.00 0.00 6.09
4015 5178 4.616802 ACATTTTCAAAATTCTAGTGCGCG 59.383 37.500 0.00 0.00 0.00 6.86
4016 5179 4.475763 TTTTCAAAATTCTAGTGCGCGA 57.524 36.364 12.10 0.00 0.00 5.87
4017 5180 3.449322 TTCAAAATTCTAGTGCGCGAC 57.551 42.857 12.10 5.29 0.00 5.19
4018 5181 2.683968 TCAAAATTCTAGTGCGCGACT 58.316 42.857 12.10 13.42 38.88 4.18
4019 5182 3.064207 TCAAAATTCTAGTGCGCGACTT 58.936 40.909 12.10 0.00 35.96 3.01
4020 5183 3.496884 TCAAAATTCTAGTGCGCGACTTT 59.503 39.130 12.10 5.41 35.96 2.66
4021 5184 4.687018 TCAAAATTCTAGTGCGCGACTTTA 59.313 37.500 12.10 0.00 35.96 1.85
4022 5185 5.177881 TCAAAATTCTAGTGCGCGACTTTAA 59.822 36.000 12.10 8.76 35.96 1.52
4023 5186 5.600908 AAATTCTAGTGCGCGACTTTAAA 57.399 34.783 12.10 6.45 35.96 1.52
4024 5187 5.796350 AATTCTAGTGCGCGACTTTAAAT 57.204 34.783 12.10 8.31 35.96 1.40
4025 5188 4.577687 TTCTAGTGCGCGACTTTAAATG 57.422 40.909 12.10 0.00 35.96 2.32
4026 5189 3.581755 TCTAGTGCGCGACTTTAAATGT 58.418 40.909 12.10 0.00 35.96 2.71
4027 5190 3.991773 TCTAGTGCGCGACTTTAAATGTT 59.008 39.130 12.10 0.00 35.96 2.71
4028 5191 3.183237 AGTGCGCGACTTTAAATGTTC 57.817 42.857 12.10 0.00 0.00 3.18
4029 5192 2.546368 AGTGCGCGACTTTAAATGTTCA 59.454 40.909 12.10 0.00 0.00 3.18
4030 5193 3.188460 AGTGCGCGACTTTAAATGTTCAT 59.812 39.130 12.10 0.00 0.00 2.57
4031 5194 3.911964 GTGCGCGACTTTAAATGTTCATT 59.088 39.130 12.10 0.00 0.00 2.57
4032 5195 5.083389 GTGCGCGACTTTAAATGTTCATTA 58.917 37.500 12.10 0.00 0.00 1.90
4033 5196 5.225129 GTGCGCGACTTTAAATGTTCATTAG 59.775 40.000 12.10 0.00 0.00 1.73
4034 5197 5.106869 TGCGCGACTTTAAATGTTCATTAGT 60.107 36.000 12.10 0.00 0.00 2.24
4035 5198 5.793457 GCGCGACTTTAAATGTTCATTAGTT 59.207 36.000 12.10 0.00 0.00 2.24
4036 5199 6.304683 GCGCGACTTTAAATGTTCATTAGTTT 59.695 34.615 12.10 0.00 0.00 2.66
4037 5200 7.644893 CGCGACTTTAAATGTTCATTAGTTTG 58.355 34.615 0.00 0.00 0.00 2.93
4038 5201 7.322699 CGCGACTTTAAATGTTCATTAGTTTGT 59.677 33.333 0.00 0.00 0.00 2.83
4039 5202 8.417176 GCGACTTTAAATGTTCATTAGTTTGTG 58.583 33.333 0.00 0.00 0.00 3.33
4040 5203 8.901748 CGACTTTAAATGTTCATTAGTTTGTGG 58.098 33.333 0.00 0.00 0.00 4.17
4041 5204 9.744468 GACTTTAAATGTTCATTAGTTTGTGGT 57.256 29.630 0.00 0.00 0.00 4.16
4044 5207 8.789881 TTAAATGTTCATTAGTTTGTGGTTCG 57.210 30.769 0.00 0.00 0.00 3.95
4045 5208 4.217754 TGTTCATTAGTTTGTGGTTCGC 57.782 40.909 0.00 0.00 0.00 4.70
4046 5209 3.223157 GTTCATTAGTTTGTGGTTCGCG 58.777 45.455 0.00 0.00 0.00 5.87
4047 5210 2.756829 TCATTAGTTTGTGGTTCGCGA 58.243 42.857 3.71 3.71 0.00 5.87
4048 5211 3.132160 TCATTAGTTTGTGGTTCGCGAA 58.868 40.909 19.38 19.38 0.00 4.70
4049 5212 3.059461 TCATTAGTTTGTGGTTCGCGAAC 60.059 43.478 37.43 37.43 38.21 3.95
4050 5213 1.937278 TAGTTTGTGGTTCGCGAACA 58.063 45.000 42.35 29.37 42.85 3.18
4051 5214 0.375803 AGTTTGTGGTTCGCGAACAC 59.624 50.000 42.35 35.63 42.85 3.32
4052 5215 0.097325 GTTTGTGGTTCGCGAACACA 59.903 50.000 42.35 37.22 42.85 3.72
4053 5216 1.018148 TTTGTGGTTCGCGAACACAT 58.982 45.000 42.35 0.00 42.85 3.21
4054 5217 1.018148 TTGTGGTTCGCGAACACATT 58.982 45.000 42.35 0.00 42.85 2.71
4055 5218 1.018148 TGTGGTTCGCGAACACATTT 58.982 45.000 42.35 0.00 42.85 2.32
4056 5219 1.402259 TGTGGTTCGCGAACACATTTT 59.598 42.857 42.35 0.00 42.85 1.82
4057 5220 2.041244 GTGGTTCGCGAACACATTTTC 58.959 47.619 42.35 27.77 42.85 2.29
4058 5221 1.671328 TGGTTCGCGAACACATTTTCA 59.329 42.857 42.35 29.66 42.85 2.69
4059 5222 2.097629 TGGTTCGCGAACACATTTTCAA 59.902 40.909 42.35 19.35 42.85 2.69
4060 5223 3.109619 GGTTCGCGAACACATTTTCAAA 58.890 40.909 42.35 9.25 42.85 2.69
4061 5224 3.548268 GGTTCGCGAACACATTTTCAAAA 59.452 39.130 42.35 8.79 42.85 2.44
4062 5225 4.208253 GGTTCGCGAACACATTTTCAAAAT 59.792 37.500 42.35 0.00 42.85 1.82
4063 5226 5.276631 GGTTCGCGAACACATTTTCAAAATT 60.277 36.000 42.35 0.00 42.85 1.82
4064 5227 5.553692 TCGCGAACACATTTTCAAAATTC 57.446 34.783 6.20 0.00 0.00 2.17
4065 5228 5.277825 TCGCGAACACATTTTCAAAATTCT 58.722 33.333 6.20 0.00 0.00 2.40
4066 5229 5.398122 TCGCGAACACATTTTCAAAATTCTC 59.602 36.000 6.20 0.00 0.00 2.87
4067 5230 5.589516 GCGAACACATTTTCAAAATTCTCG 58.410 37.500 0.00 1.23 0.00 4.04
4068 5231 5.173131 GCGAACACATTTTCAAAATTCTCGT 59.827 36.000 0.00 0.00 0.00 4.18
4069 5232 6.291585 GCGAACACATTTTCAAAATTCTCGTT 60.292 34.615 0.00 0.00 0.00 3.85
4070 5233 7.266617 CGAACACATTTTCAAAATTCTCGTTC 58.733 34.615 0.00 3.65 0.00 3.95
4071 5234 6.732181 ACACATTTTCAAAATTCTCGTTCG 57.268 33.333 0.00 0.00 0.00 3.95
4072 5235 6.262601 ACACATTTTCAAAATTCTCGTTCGT 58.737 32.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.463930 TCTTGGTTTCATCTAAATTTGTCTGT 57.536 30.769 0.00 0.00 0.00 3.41
131 272 3.498018 GCACCCAACATTTTTCATGAACC 59.502 43.478 7.89 0.00 0.00 3.62
256 397 3.023119 TCAACATAGGCCGCAATGAAAT 58.977 40.909 18.88 5.61 0.00 2.17
321 462 2.037251 TGACCACCAGTGTAAGCTCTTC 59.963 50.000 0.00 0.00 0.00 2.87
348 617 3.389656 TGCAATGCATCCATCCATTCATT 59.610 39.130 2.72 0.00 31.71 2.57
349 618 2.969262 TGCAATGCATCCATCCATTCAT 59.031 40.909 2.72 0.00 31.71 2.57
350 619 2.389715 TGCAATGCATCCATCCATTCA 58.610 42.857 2.72 0.00 31.71 2.57
388 1053 0.179070 TCGCCACAAGTTGTAGCACA 60.179 50.000 23.19 8.73 34.68 4.57
477 1164 1.202687 AGCCCATGTGTACATCCATCG 60.203 52.381 0.00 0.00 33.61 3.84
496 1183 4.351192 GTGTTGCACTACACAAAAAGGAG 58.649 43.478 15.25 0.00 46.00 3.69
701 1420 9.020731 GGACACAAAAAGGAGGAGATTAATTAA 57.979 33.333 0.00 0.00 0.00 1.40
712 1431 7.232118 AGAATTAATGGACACAAAAAGGAGG 57.768 36.000 0.00 0.00 0.00 4.30
790 1509 4.821805 GTGCCCAGCTGAGCTTAATTATTA 59.178 41.667 21.59 0.00 36.40 0.98
828 1547 6.301486 TGGTTGACTACTGAGTACTGACTAA 58.699 40.000 0.00 0.00 35.45 2.24
829 1548 5.872963 TGGTTGACTACTGAGTACTGACTA 58.127 41.667 0.00 0.00 35.45 2.59
830 1549 4.726583 TGGTTGACTACTGAGTACTGACT 58.273 43.478 0.00 0.00 35.45 3.41
831 1550 5.183331 TGATGGTTGACTACTGAGTACTGAC 59.817 44.000 0.00 0.00 35.45 3.51
832 1551 5.321927 TGATGGTTGACTACTGAGTACTGA 58.678 41.667 0.00 0.00 35.45 3.41
833 1552 5.184096 ACTGATGGTTGACTACTGAGTACTG 59.816 44.000 0.00 0.00 35.45 2.74
834 1553 5.326069 ACTGATGGTTGACTACTGAGTACT 58.674 41.667 0.00 0.00 35.45 2.73
835 1554 5.416326 AGACTGATGGTTGACTACTGAGTAC 59.584 44.000 0.00 0.00 35.45 2.73
838 1557 5.398603 AAGACTGATGGTTGACTACTGAG 57.601 43.478 0.00 0.00 0.00 3.35
880 1601 3.307975 CCTCTGATGGCGGATGGATTTAT 60.308 47.826 0.00 0.00 0.00 1.40
884 1605 2.064628 CCTCTGATGGCGGATGGAT 58.935 57.895 0.00 0.00 0.00 3.41
949 1671 0.529337 ACGAAGCAGCAGATGGATCG 60.529 55.000 0.00 0.00 35.16 3.69
1104 1863 3.680786 CCGAGCACACTGTCCGGA 61.681 66.667 0.00 0.00 42.49 5.14
1113 1872 2.425592 CCACCTTCACCGAGCACA 59.574 61.111 0.00 0.00 0.00 4.57
1284 2046 7.173722 AGAACTGAAGAGATGAATGAATTGGT 58.826 34.615 0.00 0.00 0.00 3.67
1363 2164 2.857186 TTCACTTCAGCCTGCACATA 57.143 45.000 0.00 0.00 0.00 2.29
1549 2367 7.767659 GGTAGTAACTAATTTGGGAGGTGTTAG 59.232 40.741 0.00 0.00 0.00 2.34
1624 2458 2.487746 TGTGAGCCCCCTACATCATA 57.512 50.000 0.00 0.00 0.00 2.15
1648 2482 2.306805 TCAGATTCCATGACAGTGGCTT 59.693 45.455 0.00 0.00 39.19 4.35
1707 2541 2.224305 GGCCTTGTCGCTATGTAGGAAT 60.224 50.000 0.00 0.00 0.00 3.01
1857 2702 4.990543 TGCGTTGTAGTTCTGAAATCAG 57.009 40.909 3.99 3.99 45.08 2.90
1858 2703 5.743026 TTTGCGTTGTAGTTCTGAAATCA 57.257 34.783 0.00 0.00 0.00 2.57
1868 2713 1.867233 CAGACAGCTTTGCGTTGTAGT 59.133 47.619 0.00 0.00 37.18 2.73
1913 2758 6.016024 AGAGACATGACTCTTATCATCAGCTC 60.016 42.308 20.02 0.00 43.62 4.09
1929 2774 3.452264 CCATGACCCTTGTAGAGACATGA 59.548 47.826 0.00 0.00 35.43 3.07
2028 2873 4.154195 TGGCTTCGAAGACAAATTAAGCTC 59.846 41.667 31.18 6.63 42.17 4.09
2045 2891 3.736720 TGCTACATCTGATCATGGCTTC 58.263 45.455 0.00 0.00 0.00 3.86
2063 2909 0.178767 TCAGCGATACCAAGCATGCT 59.821 50.000 16.30 16.30 35.48 3.79
2064 2910 1.016627 TTCAGCGATACCAAGCATGC 58.983 50.000 10.51 10.51 35.48 4.06
2065 2911 2.537529 CGTTTCAGCGATACCAAGCATG 60.538 50.000 0.00 0.00 35.48 4.06
2151 3086 6.062258 ACCATACCTACTGCTTAACAACAT 57.938 37.500 0.00 0.00 0.00 2.71
2152 3087 5.492855 ACCATACCTACTGCTTAACAACA 57.507 39.130 0.00 0.00 0.00 3.33
2153 3088 9.204570 CATATACCATACCTACTGCTTAACAAC 57.795 37.037 0.00 0.00 0.00 3.32
2278 3220 3.118112 CCAGTCAGGTCTGAAGCCATAAT 60.118 47.826 1.86 0.00 41.85 1.28
2285 3227 1.298014 GGCCCAGTCAGGTCTGAAG 59.702 63.158 1.86 0.00 41.85 3.02
2301 3243 3.443045 CGCATGTGGTGAAGGGGC 61.443 66.667 0.00 0.00 0.00 5.80
2359 3301 9.574516 CTCCCTTAAATTAAAGTGCATATACCT 57.425 33.333 0.00 0.00 0.00 3.08
2407 3349 3.904965 TGGTACAAAGTACATGGACTCCA 59.095 43.478 12.04 11.23 33.61 3.86
2476 3477 9.507381 AGCAGGATTATATGGGTATTACACTAT 57.493 33.333 0.00 0.00 0.00 2.12
2508 3511 5.708736 TGACCCAACATGGATTAGTGTAT 57.291 39.130 0.00 0.00 40.96 2.29
2529 3532 1.953686 ACAACGAACCACCTTGGATTG 59.046 47.619 0.00 0.00 40.96 2.67
2531 3534 1.420138 AGACAACGAACCACCTTGGAT 59.580 47.619 0.00 0.00 40.96 3.41
2532 3535 0.834612 AGACAACGAACCACCTTGGA 59.165 50.000 0.00 0.00 40.96 3.53
2533 3536 1.602377 GAAGACAACGAACCACCTTGG 59.398 52.381 0.00 0.00 45.02 3.61
2535 3538 2.484947 GGAGAAGACAACGAACCACCTT 60.485 50.000 0.00 0.00 0.00 3.50
2537 3540 1.070289 AGGAGAAGACAACGAACCACC 59.930 52.381 0.00 0.00 0.00 4.61
2545 3548 2.838736 TGTTGCAGAGGAGAAGACAAC 58.161 47.619 0.00 0.00 38.25 3.32
2563 3568 4.866508 TTCCTTGTTCGTAGTCAGATGT 57.133 40.909 0.00 0.00 0.00 3.06
2650 3659 3.753797 CCAAAGGTTCAGAAAGGACTAGC 59.246 47.826 0.00 0.00 0.00 3.42
2672 3684 2.415512 GTCGTCAGATGCCCTGTTAAAC 59.584 50.000 3.57 0.00 43.38 2.01
2694 3706 0.249322 AGCTGTACACGTCGCACTTT 60.249 50.000 7.48 0.00 0.00 2.66
2721 3733 0.109153 ACAACATCTCCAGCAGCACA 59.891 50.000 0.00 0.00 0.00 4.57
3088 4126 2.306805 TGAACCCTTCATCAGTGCTCAT 59.693 45.455 0.00 0.00 34.08 2.90
3179 4225 4.517285 TCAACTCATCATCCTGCCTAAAC 58.483 43.478 0.00 0.00 0.00 2.01
3197 4243 3.004734 CCAAAACTCCACCAGTCATCAAC 59.995 47.826 0.00 0.00 32.30 3.18
3199 4245 2.174639 ACCAAAACTCCACCAGTCATCA 59.825 45.455 0.00 0.00 32.30 3.07
3201 4247 3.312736 AACCAAAACTCCACCAGTCAT 57.687 42.857 0.00 0.00 32.30 3.06
3250 4316 7.050377 TCCATGGAAATAAAACAGTTTTGCAA 58.950 30.769 19.77 0.00 34.95 4.08
3258 4324 9.826574 ATCAATCAATCCATGGAAATAAAACAG 57.173 29.630 20.67 3.93 0.00 3.16
3277 4344 6.963083 TTACCATGCATCATTGATCAATCA 57.037 33.333 18.16 13.16 34.44 2.57
3440 4595 7.977293 GCTATAAATAACCAATTTGGAAACGGT 59.023 33.333 22.19 5.22 40.96 4.83
3465 4623 2.693074 TCCTTTTGACTTTCTTGTGGGC 59.307 45.455 0.00 0.00 0.00 5.36
3689 4849 2.440409 AGTGCCAAAAGCCATAGACAG 58.560 47.619 0.00 0.00 42.71 3.51
3735 4898 7.360438 GCACTTCACTCCTTAAACAGTAATGAG 60.360 40.741 0.00 0.00 0.00 2.90
3738 4901 6.296026 TGCACTTCACTCCTTAAACAGTAAT 58.704 36.000 0.00 0.00 0.00 1.89
3742 4905 5.695851 AATGCACTTCACTCCTTAAACAG 57.304 39.130 0.00 0.00 0.00 3.16
3744 4907 5.831997 ACAAATGCACTTCACTCCTTAAAC 58.168 37.500 0.00 0.00 0.00 2.01
3752 4915 2.362077 GGACCAACAAATGCACTTCACT 59.638 45.455 0.00 0.00 0.00 3.41
3753 4916 2.545742 GGGACCAACAAATGCACTTCAC 60.546 50.000 0.00 0.00 0.00 3.18
3754 4917 1.686052 GGGACCAACAAATGCACTTCA 59.314 47.619 0.00 0.00 0.00 3.02
3755 4918 1.963515 AGGGACCAACAAATGCACTTC 59.036 47.619 0.00 0.00 0.00 3.01
3756 4919 2.086610 AGGGACCAACAAATGCACTT 57.913 45.000 0.00 0.00 0.00 3.16
3757 4920 2.969821 TAGGGACCAACAAATGCACT 57.030 45.000 0.00 0.00 0.00 4.40
3758 4921 3.320826 AGTTTAGGGACCAACAAATGCAC 59.679 43.478 0.00 0.00 0.00 4.57
3759 4922 3.571590 AGTTTAGGGACCAACAAATGCA 58.428 40.909 0.00 0.00 0.00 3.96
3760 4923 5.914898 ATAGTTTAGGGACCAACAAATGC 57.085 39.130 0.00 0.00 0.00 3.56
3761 4924 7.891561 TGAAATAGTTTAGGGACCAACAAATG 58.108 34.615 0.00 0.00 0.00 2.32
3762 4925 8.531146 CATGAAATAGTTTAGGGACCAACAAAT 58.469 33.333 0.00 0.00 0.00 2.32
3763 4926 7.726291 TCATGAAATAGTTTAGGGACCAACAAA 59.274 33.333 0.00 0.00 0.00 2.83
3764 4927 7.235079 TCATGAAATAGTTTAGGGACCAACAA 58.765 34.615 0.00 0.00 0.00 2.83
3765 4928 6.785076 TCATGAAATAGTTTAGGGACCAACA 58.215 36.000 0.00 0.00 0.00 3.33
3766 4929 6.884836 ACTCATGAAATAGTTTAGGGACCAAC 59.115 38.462 0.00 0.00 0.00 3.77
3767 4930 6.884295 CACTCATGAAATAGTTTAGGGACCAA 59.116 38.462 0.00 0.00 0.00 3.67
3768 4931 6.012858 ACACTCATGAAATAGTTTAGGGACCA 60.013 38.462 0.00 0.00 0.00 4.02
3769 4932 6.415573 ACACTCATGAAATAGTTTAGGGACC 58.584 40.000 0.00 0.00 0.00 4.46
3770 4933 7.103641 TGACACTCATGAAATAGTTTAGGGAC 58.896 38.462 0.00 0.00 0.00 4.46
3771 4934 7.252612 TGACACTCATGAAATAGTTTAGGGA 57.747 36.000 0.00 0.00 0.00 4.20
3785 4948 8.220375 AGTTTGAGAACCTACATGACACTCATG 61.220 40.741 10.12 10.12 46.04 3.07
3786 4949 5.745312 TTGAGAACCTACATGACACTCAT 57.255 39.130 0.00 0.00 37.65 2.90
3787 4950 5.070446 AGTTTGAGAACCTACATGACACTCA 59.930 40.000 0.00 3.01 36.39 3.41
3788 4951 5.542779 AGTTTGAGAACCTACATGACACTC 58.457 41.667 0.00 0.39 36.39 3.51
3789 4952 5.552870 AGTTTGAGAACCTACATGACACT 57.447 39.130 0.00 0.00 36.39 3.55
3790 4953 7.097192 TCATAGTTTGAGAACCTACATGACAC 58.903 38.462 0.00 0.00 36.39 3.67
3791 4954 7.239763 TCATAGTTTGAGAACCTACATGACA 57.760 36.000 0.00 0.00 36.39 3.58
3792 4955 8.547967 TTTCATAGTTTGAGAACCTACATGAC 57.452 34.615 0.00 0.00 36.39 3.06
3793 4956 9.739276 ATTTTCATAGTTTGAGAACCTACATGA 57.261 29.630 0.00 0.00 36.39 3.07
3794 4957 9.994432 GATTTTCATAGTTTGAGAACCTACATG 57.006 33.333 0.00 0.00 36.39 3.21
3795 4958 8.883731 CGATTTTCATAGTTTGAGAACCTACAT 58.116 33.333 0.00 0.00 36.39 2.29
3796 4959 7.333423 CCGATTTTCATAGTTTGAGAACCTACA 59.667 37.037 0.00 0.00 36.39 2.74
3797 4960 7.676572 GCCGATTTTCATAGTTTGAGAACCTAC 60.677 40.741 0.00 0.00 36.39 3.18
3798 4961 6.315393 GCCGATTTTCATAGTTTGAGAACCTA 59.685 38.462 0.00 0.00 36.39 3.08
3799 4962 5.123979 GCCGATTTTCATAGTTTGAGAACCT 59.876 40.000 0.00 0.00 36.39 3.50
3800 4963 5.106317 TGCCGATTTTCATAGTTTGAGAACC 60.106 40.000 0.00 0.00 36.39 3.62
3801 4964 5.938322 TGCCGATTTTCATAGTTTGAGAAC 58.062 37.500 0.00 0.00 35.27 3.01
3802 4965 6.599244 AGATGCCGATTTTCATAGTTTGAGAA 59.401 34.615 0.00 0.00 35.27 2.87
3803 4966 6.115446 AGATGCCGATTTTCATAGTTTGAGA 58.885 36.000 0.00 0.00 35.27 3.27
3804 4967 6.369059 AGATGCCGATTTTCATAGTTTGAG 57.631 37.500 0.00 0.00 35.27 3.02
3805 4968 6.483307 CCTAGATGCCGATTTTCATAGTTTGA 59.517 38.462 0.00 0.00 0.00 2.69
3806 4969 6.260936 ACCTAGATGCCGATTTTCATAGTTTG 59.739 38.462 0.00 0.00 0.00 2.93
3807 4970 6.357367 ACCTAGATGCCGATTTTCATAGTTT 58.643 36.000 0.00 0.00 0.00 2.66
3808 4971 5.930135 ACCTAGATGCCGATTTTCATAGTT 58.070 37.500 0.00 0.00 0.00 2.24
3809 4972 5.511545 GGACCTAGATGCCGATTTTCATAGT 60.512 44.000 0.00 0.00 0.00 2.12
3810 4973 4.932200 GGACCTAGATGCCGATTTTCATAG 59.068 45.833 0.00 0.00 0.00 2.23
3811 4974 4.593206 AGGACCTAGATGCCGATTTTCATA 59.407 41.667 0.00 0.00 0.00 2.15
3812 4975 3.392616 AGGACCTAGATGCCGATTTTCAT 59.607 43.478 0.00 0.00 0.00 2.57
3813 4976 2.771943 AGGACCTAGATGCCGATTTTCA 59.228 45.455 0.00 0.00 0.00 2.69
3814 4977 3.394719 GAGGACCTAGATGCCGATTTTC 58.605 50.000 0.00 0.00 0.00 2.29
3815 4978 2.224066 CGAGGACCTAGATGCCGATTTT 60.224 50.000 0.00 0.00 0.00 1.82
3816 4979 1.341531 CGAGGACCTAGATGCCGATTT 59.658 52.381 0.00 0.00 0.00 2.17
3817 4980 0.962489 CGAGGACCTAGATGCCGATT 59.038 55.000 0.00 0.00 0.00 3.34
3818 4981 0.110678 TCGAGGACCTAGATGCCGAT 59.889 55.000 0.00 0.00 0.00 4.18
3819 4982 0.106868 TTCGAGGACCTAGATGCCGA 60.107 55.000 5.02 0.76 0.00 5.54
3820 4983 0.312416 CTTCGAGGACCTAGATGCCG 59.688 60.000 5.02 0.00 0.00 5.69
3821 4984 1.067821 CACTTCGAGGACCTAGATGCC 59.932 57.143 14.90 0.00 0.00 4.40
3822 4985 1.537135 GCACTTCGAGGACCTAGATGC 60.537 57.143 12.61 12.61 0.00 3.91
3823 4986 1.751351 TGCACTTCGAGGACCTAGATG 59.249 52.381 13.79 13.79 0.00 2.90
3824 4987 2.028130 CTGCACTTCGAGGACCTAGAT 58.972 52.381 5.02 0.00 0.00 1.98
3825 4988 1.271982 ACTGCACTTCGAGGACCTAGA 60.272 52.381 0.00 0.00 0.00 2.43
3826 4989 1.178276 ACTGCACTTCGAGGACCTAG 58.822 55.000 0.00 0.00 0.00 3.02
3827 4990 2.502142 TACTGCACTTCGAGGACCTA 57.498 50.000 0.00 0.00 0.00 3.08
3828 4991 1.546476 CTTACTGCACTTCGAGGACCT 59.454 52.381 0.00 0.00 0.00 3.85
3829 4992 1.272769 ACTTACTGCACTTCGAGGACC 59.727 52.381 0.00 0.00 0.00 4.46
3830 4993 2.288273 ACACTTACTGCACTTCGAGGAC 60.288 50.000 0.00 0.00 0.00 3.85
3831 4994 1.961394 ACACTTACTGCACTTCGAGGA 59.039 47.619 0.00 0.00 0.00 3.71
3832 4995 2.061773 CACACTTACTGCACTTCGAGG 58.938 52.381 0.00 0.00 0.00 4.63
3833 4996 2.743938 ACACACTTACTGCACTTCGAG 58.256 47.619 0.00 0.00 0.00 4.04
3834 4997 2.882927 ACACACTTACTGCACTTCGA 57.117 45.000 0.00 0.00 0.00 3.71
3835 4998 5.591643 AATAACACACTTACTGCACTTCG 57.408 39.130 0.00 0.00 0.00 3.79
3836 4999 6.142817 CCAAATAACACACTTACTGCACTTC 58.857 40.000 0.00 0.00 0.00 3.01
3837 5000 5.009610 CCCAAATAACACACTTACTGCACTT 59.990 40.000 0.00 0.00 0.00 3.16
3838 5001 4.518970 CCCAAATAACACACTTACTGCACT 59.481 41.667 0.00 0.00 0.00 4.40
3839 5002 4.277423 ACCCAAATAACACACTTACTGCAC 59.723 41.667 0.00 0.00 0.00 4.57
3840 5003 4.465886 ACCCAAATAACACACTTACTGCA 58.534 39.130 0.00 0.00 0.00 4.41
3841 5004 4.082949 GGACCCAAATAACACACTTACTGC 60.083 45.833 0.00 0.00 0.00 4.40
3842 5005 5.067273 TGGACCCAAATAACACACTTACTG 58.933 41.667 0.00 0.00 0.00 2.74
3843 5006 5.313280 TGGACCCAAATAACACACTTACT 57.687 39.130 0.00 0.00 0.00 2.24
3844 5007 6.394025 TTTGGACCCAAATAACACACTTAC 57.606 37.500 9.96 0.00 40.51 2.34
3845 5008 7.507616 AGATTTTGGACCCAAATAACACACTTA 59.492 33.333 14.26 0.00 44.14 2.24
3846 5009 5.941555 TTTTGGACCCAAATAACACACTT 57.058 34.783 14.26 0.00 44.14 3.16
3847 5010 5.838521 AGATTTTGGACCCAAATAACACACT 59.161 36.000 14.26 5.01 44.14 3.55
3848 5011 5.925969 CAGATTTTGGACCCAAATAACACAC 59.074 40.000 14.26 3.22 44.14 3.82
3849 5012 5.600484 ACAGATTTTGGACCCAAATAACACA 59.400 36.000 14.26 0.07 44.14 3.72
3850 5013 6.015434 AGACAGATTTTGGACCCAAATAACAC 60.015 38.462 14.26 6.18 44.14 3.32
3851 5014 6.074648 AGACAGATTTTGGACCCAAATAACA 58.925 36.000 14.26 1.09 44.14 2.41
3852 5015 6.590234 AGACAGATTTTGGACCCAAATAAC 57.410 37.500 14.26 9.18 44.14 1.89
3853 5016 7.177744 GGTTAGACAGATTTTGGACCCAAATAA 59.822 37.037 14.26 6.30 44.14 1.40
3854 5017 6.661805 GGTTAGACAGATTTTGGACCCAAATA 59.338 38.462 14.26 6.88 44.14 1.40
3855 5018 5.480422 GGTTAGACAGATTTTGGACCCAAAT 59.520 40.000 14.26 8.92 44.14 2.32
3856 5019 4.830600 GGTTAGACAGATTTTGGACCCAAA 59.169 41.667 9.96 9.96 43.23 3.28
3857 5020 4.403734 GGTTAGACAGATTTTGGACCCAA 58.596 43.478 0.00 0.00 0.00 4.12
3858 5021 3.245122 GGGTTAGACAGATTTTGGACCCA 60.245 47.826 3.47 0.00 34.08 4.51
3859 5022 3.010250 AGGGTTAGACAGATTTTGGACCC 59.990 47.826 0.00 0.00 0.00 4.46
3860 5023 4.010349 CAGGGTTAGACAGATTTTGGACC 58.990 47.826 0.00 0.00 0.00 4.46
3861 5024 3.440522 GCAGGGTTAGACAGATTTTGGAC 59.559 47.826 0.00 0.00 0.00 4.02
3862 5025 3.561313 GGCAGGGTTAGACAGATTTTGGA 60.561 47.826 0.00 0.00 0.00 3.53
3863 5026 2.755103 GGCAGGGTTAGACAGATTTTGG 59.245 50.000 0.00 0.00 0.00 3.28
3864 5027 3.441572 CAGGCAGGGTTAGACAGATTTTG 59.558 47.826 0.00 0.00 0.00 2.44
3865 5028 3.330701 TCAGGCAGGGTTAGACAGATTTT 59.669 43.478 0.00 0.00 0.00 1.82
3866 5029 2.912956 TCAGGCAGGGTTAGACAGATTT 59.087 45.455 0.00 0.00 0.00 2.17
3867 5030 2.237392 GTCAGGCAGGGTTAGACAGATT 59.763 50.000 0.00 0.00 0.00 2.40
3868 5031 1.834263 GTCAGGCAGGGTTAGACAGAT 59.166 52.381 0.00 0.00 0.00 2.90
3869 5032 1.267121 GTCAGGCAGGGTTAGACAGA 58.733 55.000 0.00 0.00 0.00 3.41
3870 5033 0.250513 GGTCAGGCAGGGTTAGACAG 59.749 60.000 0.00 0.00 0.00 3.51
3871 5034 1.541310 CGGTCAGGCAGGGTTAGACA 61.541 60.000 0.00 0.00 0.00 3.41
3872 5035 1.218316 CGGTCAGGCAGGGTTAGAC 59.782 63.158 0.00 0.00 0.00 2.59
3873 5036 1.987855 CCGGTCAGGCAGGGTTAGA 60.988 63.158 0.00 0.00 0.00 2.10
3874 5037 2.584608 CCGGTCAGGCAGGGTTAG 59.415 66.667 0.00 0.00 0.00 2.34
3883 5046 4.335647 AACAGCTGGCCGGTCAGG 62.336 66.667 35.68 22.94 44.97 3.86
3884 5047 3.052082 CAACAGCTGGCCGGTCAG 61.052 66.667 31.91 31.91 37.79 3.51
3894 5057 1.893808 CGGGTCAACAGCAACAGCT 60.894 57.895 0.00 0.00 39.75 4.24
3895 5058 2.186826 ACGGGTCAACAGCAACAGC 61.187 57.895 0.00 0.00 0.00 4.40
3896 5059 1.648720 CACGGGTCAACAGCAACAG 59.351 57.895 0.00 0.00 0.00 3.16
3897 5060 1.821759 CCACGGGTCAACAGCAACA 60.822 57.895 0.00 0.00 0.00 3.33
3898 5061 3.030652 CCACGGGTCAACAGCAAC 58.969 61.111 0.00 0.00 0.00 4.17
3899 5062 2.904866 GCCACGGGTCAACAGCAA 60.905 61.111 0.00 0.00 0.00 3.91
3900 5063 4.182433 TGCCACGGGTCAACAGCA 62.182 61.111 0.00 0.00 0.00 4.41
3901 5064 3.660111 GTGCCACGGGTCAACAGC 61.660 66.667 0.00 0.00 0.00 4.40
3902 5065 3.345808 CGTGCCACGGGTCAACAG 61.346 66.667 9.90 0.00 38.08 3.16
3912 5075 2.106332 CCCTATCCGACGTGCCAC 59.894 66.667 0.00 0.00 0.00 5.01
3913 5076 3.151710 CCCCTATCCGACGTGCCA 61.152 66.667 0.00 0.00 0.00 4.92
3914 5077 4.603946 GCCCCTATCCGACGTGCC 62.604 72.222 0.00 0.00 0.00 5.01
3915 5078 4.603946 GGCCCCTATCCGACGTGC 62.604 72.222 0.00 0.00 0.00 5.34
3916 5079 3.925090 GGGCCCCTATCCGACGTG 61.925 72.222 12.23 0.00 0.00 4.49
3917 5080 4.468769 TGGGCCCCTATCCGACGT 62.469 66.667 22.27 0.00 0.00 4.34
3918 5081 3.925090 GTGGGCCCCTATCCGACG 61.925 72.222 22.27 0.00 0.00 5.12
3919 5082 2.325393 CTTGTGGGCCCCTATCCGAC 62.325 65.000 22.27 9.56 33.59 4.79
3920 5083 2.041430 TTGTGGGCCCCTATCCGA 59.959 61.111 22.27 0.00 0.00 4.55
3921 5084 2.510906 CTTGTGGGCCCCTATCCG 59.489 66.667 22.27 0.00 0.00 4.18
3922 5085 0.696485 TACCTTGTGGGCCCCTATCC 60.696 60.000 22.27 2.11 39.10 2.59
3923 5086 1.218844 TTACCTTGTGGGCCCCTATC 58.781 55.000 22.27 7.91 39.10 2.08
3924 5087 1.499007 CATTACCTTGTGGGCCCCTAT 59.501 52.381 22.27 0.79 39.10 2.57
3925 5088 0.923358 CATTACCTTGTGGGCCCCTA 59.077 55.000 22.27 4.83 39.10 3.53
3926 5089 1.697297 CATTACCTTGTGGGCCCCT 59.303 57.895 22.27 0.00 39.10 4.79
3927 5090 1.381191 CCATTACCTTGTGGGCCCC 60.381 63.158 22.27 11.72 39.10 5.80
3928 5091 2.058001 GCCATTACCTTGTGGGCCC 61.058 63.158 17.59 17.59 38.70 5.80
3929 5092 3.616086 GCCATTACCTTGTGGGCC 58.384 61.111 0.00 0.00 38.70 5.80
3931 5094 0.106719 ATCGGCCATTACCTTGTGGG 60.107 55.000 2.24 0.00 41.89 4.61
3932 5095 1.024271 CATCGGCCATTACCTTGTGG 58.976 55.000 2.24 0.00 38.55 4.17
3933 5096 1.670811 GTCATCGGCCATTACCTTGTG 59.329 52.381 2.24 0.00 0.00 3.33
3934 5097 1.742411 CGTCATCGGCCATTACCTTGT 60.742 52.381 2.24 0.00 0.00 3.16
3935 5098 0.937304 CGTCATCGGCCATTACCTTG 59.063 55.000 2.24 0.00 0.00 3.61
3936 5099 3.379650 CGTCATCGGCCATTACCTT 57.620 52.632 2.24 0.00 0.00 3.50
3947 5110 8.506140 AATTTATTTGCATATTTCCGTCATCG 57.494 30.769 0.00 0.00 0.00 3.84
3948 5111 9.462174 TGAATTTATTTGCATATTTCCGTCATC 57.538 29.630 0.00 0.00 0.00 2.92
3949 5112 9.814899 TTGAATTTATTTGCATATTTCCGTCAT 57.185 25.926 0.00 0.00 0.00 3.06
3950 5113 9.645059 TTTGAATTTATTTGCATATTTCCGTCA 57.355 25.926 0.00 0.00 0.00 4.35
3968 5131 9.844257 TGTGTTCCTTGGAATTTATTTGAATTT 57.156 25.926 5.32 0.00 29.75 1.82
3971 5134 9.844257 AAATGTGTTCCTTGGAATTTATTTGAA 57.156 25.926 5.32 0.00 0.00 2.69
3972 5135 9.844257 AAAATGTGTTCCTTGGAATTTATTTGA 57.156 25.926 5.32 0.00 0.00 2.69
3974 5137 9.844257 TGAAAATGTGTTCCTTGGAATTTATTT 57.156 25.926 5.32 9.22 0.00 1.40
3975 5138 9.844257 TTGAAAATGTGTTCCTTGGAATTTATT 57.156 25.926 5.32 4.33 0.00 1.40
3976 5139 9.844257 TTTGAAAATGTGTTCCTTGGAATTTAT 57.156 25.926 5.32 0.00 0.00 1.40
3977 5140 9.672673 TTTTGAAAATGTGTTCCTTGGAATTTA 57.327 25.926 5.32 0.00 0.00 1.40
3978 5141 8.572855 TTTTGAAAATGTGTTCCTTGGAATTT 57.427 26.923 5.32 1.99 0.00 1.82
3979 5142 8.750515 ATTTTGAAAATGTGTTCCTTGGAATT 57.249 26.923 1.78 0.00 0.00 2.17
3980 5143 8.750515 AATTTTGAAAATGTGTTCCTTGGAAT 57.249 26.923 3.62 0.00 0.00 3.01
3981 5144 8.046107 AGAATTTTGAAAATGTGTTCCTTGGAA 58.954 29.630 3.62 0.00 0.00 3.53
3982 5145 7.563906 AGAATTTTGAAAATGTGTTCCTTGGA 58.436 30.769 3.62 0.00 0.00 3.53
3983 5146 7.790823 AGAATTTTGAAAATGTGTTCCTTGG 57.209 32.000 3.62 0.00 0.00 3.61
3984 5147 9.533253 ACTAGAATTTTGAAAATGTGTTCCTTG 57.467 29.630 3.62 0.53 0.00 3.61
3985 5148 9.533253 CACTAGAATTTTGAAAATGTGTTCCTT 57.467 29.630 3.62 0.00 0.00 3.36
3986 5149 7.653311 GCACTAGAATTTTGAAAATGTGTTCCT 59.347 33.333 15.60 6.17 0.00 3.36
3987 5150 7.358352 CGCACTAGAATTTTGAAAATGTGTTCC 60.358 37.037 15.60 4.14 0.00 3.62
3988 5151 7.493313 CGCACTAGAATTTTGAAAATGTGTTC 58.507 34.615 15.60 7.01 0.00 3.18
3989 5152 6.074356 GCGCACTAGAATTTTGAAAATGTGTT 60.074 34.615 15.60 0.00 0.00 3.32
3990 5153 5.402270 GCGCACTAGAATTTTGAAAATGTGT 59.598 36.000 15.60 6.52 0.00 3.72
3991 5154 5.441872 CGCGCACTAGAATTTTGAAAATGTG 60.442 40.000 8.75 8.80 0.00 3.21
3992 5155 4.616802 CGCGCACTAGAATTTTGAAAATGT 59.383 37.500 8.75 0.00 0.00 2.71
3993 5156 4.851014 TCGCGCACTAGAATTTTGAAAATG 59.149 37.500 8.75 0.00 0.00 2.32
3994 5157 4.851558 GTCGCGCACTAGAATTTTGAAAAT 59.148 37.500 8.75 0.00 0.00 1.82
3995 5158 4.024387 AGTCGCGCACTAGAATTTTGAAAA 60.024 37.500 8.75 0.00 31.37 2.29
3996 5159 3.496884 AGTCGCGCACTAGAATTTTGAAA 59.503 39.130 8.75 0.00 31.37 2.69
3997 5160 3.064207 AGTCGCGCACTAGAATTTTGAA 58.936 40.909 8.75 0.00 31.37 2.69
3998 5161 2.683968 AGTCGCGCACTAGAATTTTGA 58.316 42.857 8.75 0.00 31.37 2.69
3999 5162 3.455619 AAGTCGCGCACTAGAATTTTG 57.544 42.857 8.75 0.00 32.30 2.44
4000 5163 5.600908 TTAAAGTCGCGCACTAGAATTTT 57.399 34.783 8.75 3.94 36.33 1.82
4001 5164 5.600908 TTTAAAGTCGCGCACTAGAATTT 57.399 34.783 8.75 10.77 38.12 1.82
4002 5165 5.121768 ACATTTAAAGTCGCGCACTAGAATT 59.878 36.000 8.75 0.00 32.30 2.17
4003 5166 4.630069 ACATTTAAAGTCGCGCACTAGAAT 59.370 37.500 8.75 8.43 32.30 2.40
4004 5167 3.991773 ACATTTAAAGTCGCGCACTAGAA 59.008 39.130 8.75 5.46 32.30 2.10
4005 5168 3.581755 ACATTTAAAGTCGCGCACTAGA 58.418 40.909 8.75 0.00 32.30 2.43
4006 5169 3.991605 ACATTTAAAGTCGCGCACTAG 57.008 42.857 8.75 0.00 32.30 2.57
4007 5170 3.741856 TGAACATTTAAAGTCGCGCACTA 59.258 39.130 8.75 0.00 32.30 2.74
4008 5171 2.546368 TGAACATTTAAAGTCGCGCACT 59.454 40.909 8.75 7.49 36.64 4.40
4009 5172 2.911120 TGAACATTTAAAGTCGCGCAC 58.089 42.857 8.75 4.91 0.00 5.34
4010 5173 3.822594 ATGAACATTTAAAGTCGCGCA 57.177 38.095 8.75 0.00 0.00 6.09
4011 5174 5.321516 ACTAATGAACATTTAAAGTCGCGC 58.678 37.500 0.00 0.00 32.50 6.86
4012 5175 7.322699 ACAAACTAATGAACATTTAAAGTCGCG 59.677 33.333 0.00 0.00 32.50 5.87
4013 5176 8.417176 CACAAACTAATGAACATTTAAAGTCGC 58.583 33.333 5.37 0.00 32.50 5.19
4014 5177 8.901748 CCACAAACTAATGAACATTTAAAGTCG 58.098 33.333 5.37 2.52 32.50 4.18
4015 5178 9.744468 ACCACAAACTAATGAACATTTAAAGTC 57.256 29.630 5.37 0.00 32.50 3.01
4018 5181 9.239002 CGAACCACAAACTAATGAACATTTAAA 57.761 29.630 5.37 0.00 32.50 1.52
4019 5182 7.380065 GCGAACCACAAACTAATGAACATTTAA 59.620 33.333 5.37 0.00 32.50 1.52
4020 5183 6.858993 GCGAACCACAAACTAATGAACATTTA 59.141 34.615 5.37 0.00 32.50 1.40
4021 5184 5.689961 GCGAACCACAAACTAATGAACATTT 59.310 36.000 5.37 0.00 32.50 2.32
4022 5185 5.219633 GCGAACCACAAACTAATGAACATT 58.780 37.500 5.40 5.40 34.93 2.71
4023 5186 4.612712 CGCGAACCACAAACTAATGAACAT 60.613 41.667 0.00 0.00 0.00 2.71
4024 5187 3.303461 CGCGAACCACAAACTAATGAACA 60.303 43.478 0.00 0.00 0.00 3.18
4025 5188 3.059461 TCGCGAACCACAAACTAATGAAC 60.059 43.478 6.20 0.00 0.00 3.18
4026 5189 3.132160 TCGCGAACCACAAACTAATGAA 58.868 40.909 6.20 0.00 0.00 2.57
4027 5190 2.756829 TCGCGAACCACAAACTAATGA 58.243 42.857 6.20 0.00 0.00 2.57
4028 5191 3.223157 GTTCGCGAACCACAAACTAATG 58.777 45.455 35.88 0.00 35.36 1.90
4029 5192 2.873472 TGTTCGCGAACCACAAACTAAT 59.127 40.909 40.08 0.00 40.46 1.73
4030 5193 2.030701 GTGTTCGCGAACCACAAACTAA 59.969 45.455 40.08 21.31 40.46 2.24
4031 5194 1.593933 GTGTTCGCGAACCACAAACTA 59.406 47.619 40.08 21.98 40.46 2.24
4032 5195 0.375803 GTGTTCGCGAACCACAAACT 59.624 50.000 40.08 0.00 40.46 2.66
4033 5196 0.097325 TGTGTTCGCGAACCACAAAC 59.903 50.000 40.08 31.75 40.46 2.93
4034 5197 1.018148 ATGTGTTCGCGAACCACAAA 58.982 45.000 36.71 25.05 40.46 2.83
4035 5198 1.018148 AATGTGTTCGCGAACCACAA 58.982 45.000 36.71 27.29 40.46 3.33
4036 5199 1.018148 AAATGTGTTCGCGAACCACA 58.982 45.000 40.08 37.67 40.46 4.17
4037 5200 2.041244 GAAAATGTGTTCGCGAACCAC 58.959 47.619 40.08 34.54 40.46 4.16
4038 5201 1.671328 TGAAAATGTGTTCGCGAACCA 59.329 42.857 40.08 35.13 40.46 3.67
4039 5202 2.392933 TGAAAATGTGTTCGCGAACC 57.607 45.000 40.08 31.68 40.46 3.62
4040 5203 4.746836 TTTTGAAAATGTGTTCGCGAAC 57.253 36.364 38.12 38.12 41.50 3.95
4041 5204 5.746245 AGAATTTTGAAAATGTGTTCGCGAA 59.254 32.000 19.38 19.38 0.00 4.70
4042 5205 5.277825 AGAATTTTGAAAATGTGTTCGCGA 58.722 33.333 3.71 3.71 0.00 5.87
4043 5206 5.559694 AGAATTTTGAAAATGTGTTCGCG 57.440 34.783 3.62 0.00 0.00 5.87
4044 5207 5.173131 ACGAGAATTTTGAAAATGTGTTCGC 59.827 36.000 17.84 9.35 0.00 4.70
4045 5208 6.732181 ACGAGAATTTTGAAAATGTGTTCG 57.268 33.333 17.01 17.01 0.00 3.95
4046 5209 7.044314 ACGAACGAGAATTTTGAAAATGTGTTC 60.044 33.333 17.83 17.83 0.00 3.18
4047 5210 6.750039 ACGAACGAGAATTTTGAAAATGTGTT 59.250 30.769 3.62 6.80 0.00 3.32
4048 5211 6.262601 ACGAACGAGAATTTTGAAAATGTGT 58.737 32.000 3.62 0.00 0.00 3.72
4049 5212 6.732181 ACGAACGAGAATTTTGAAAATGTG 57.268 33.333 3.62 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.