Multiple sequence alignment - TraesCS7D01G518300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G518300 chr7D 100.000 3320 0 0 1 3320 616928409 616931728 0.000000e+00 6131.0
1 TraesCS7D01G518300 chr7D 78.753 946 132 33 598 1512 616942932 616943839 1.340000e-158 569.0
2 TraesCS7D01G518300 chr7D 79.227 414 57 19 893 1282 616953070 616953478 9.140000e-66 261.0
3 TraesCS7D01G518300 chr7A 90.523 1530 113 13 437 1946 709677288 709678805 0.000000e+00 1993.0
4 TraesCS7D01G518300 chr7A 86.907 1222 88 22 1991 3167 709678905 709680099 0.000000e+00 1304.0
5 TraesCS7D01G518300 chr7A 77.426 948 142 34 598 1512 709697619 709698527 1.780000e-137 499.0
6 TraesCS7D01G518300 chr7A 82.576 396 57 6 1022 1415 709710703 709711088 4.100000e-89 339.0
7 TraesCS7D01G518300 chr7A 91.720 157 10 2 97 251 724283367 724283522 7.210000e-52 215.0
8 TraesCS7D01G518300 chr7A 91.083 157 12 1 97 251 31256682 31256838 9.330000e-51 211.0
9 TraesCS7D01G518300 chr7A 89.130 138 11 3 3184 3320 709681687 709681821 5.700000e-38 169.0
10 TraesCS7D01G518300 chr7A 97.674 43 1 0 3170 3212 709681651 709681693 1.280000e-09 75.0
11 TraesCS7D01G518300 chr7B 93.042 1236 80 6 437 1669 711004552 711005784 0.000000e+00 1801.0
12 TraesCS7D01G518300 chr7B 87.043 1204 101 17 1991 3164 711031996 711033174 0.000000e+00 1308.0
13 TraesCS7D01G518300 chr7B 85.714 203 23 4 2553 2750 711050770 711050971 3.360000e-50 209.0
14 TraesCS7D01G518300 chr7B 93.151 73 4 1 3204 3275 711038160 711038232 4.530000e-19 106.0
15 TraesCS7D01G518300 chr7B 100.000 43 0 0 3170 3212 711038090 711038132 2.750000e-11 80.5
16 TraesCS7D01G518300 chr3A 93.464 459 7 2 1 436 746625896 746626354 0.000000e+00 660.0
17 TraesCS7D01G518300 chr3A 88.690 168 18 1 270 436 718380953 718380786 1.560000e-48 204.0
18 TraesCS7D01G518300 chr3A 86.275 51 6 1 1943 1992 606371009 606371059 2.000000e-03 54.7
19 TraesCS7D01G518300 chr1D 87.917 480 14 12 1 436 161035781 161036260 2.930000e-145 525.0
20 TraesCS7D01G518300 chr3D 87.265 479 14 6 1 436 374271572 374271098 1.370000e-138 503.0
21 TraesCS7D01G518300 chr3D 93.103 58 3 1 2751 2807 380046846 380046789 2.120000e-12 84.2
22 TraesCS7D01G518300 chr3D 100.000 32 0 0 1964 1995 463117691 463117660 3.580000e-05 60.2
23 TraesCS7D01G518300 chr6A 78.112 466 67 19 1 436 428725568 428726028 2.540000e-66 263.0
24 TraesCS7D01G518300 chr5A 85.768 267 16 11 1 246 21833258 21833523 2.540000e-66 263.0
25 TraesCS7D01G518300 chr5A 92.105 152 10 1 97 246 568933180 568933331 2.590000e-51 213.0
26 TraesCS7D01G518300 chr5A 91.558 154 11 1 100 251 178826434 178826281 9.330000e-51 211.0
27 TraesCS7D01G518300 chrUn 85.185 270 18 11 1 249 28595676 28595408 1.180000e-64 257.0
28 TraesCS7D01G518300 chr1A 77.593 482 54 24 1 444 52534572 52534107 3.310000e-60 243.0
29 TraesCS7D01G518300 chr1A 78.108 370 62 13 85 437 445504848 445504481 2.010000e-52 217.0
30 TraesCS7D01G518300 chr2D 79.666 359 49 13 82 437 70027955 70028292 1.540000e-58 237.0
31 TraesCS7D01G518300 chr2D 89.831 59 4 2 2749 2807 524945577 524945633 1.280000e-09 75.0
32 TraesCS7D01G518300 chr2A 88.764 178 18 2 270 445 744541038 744541215 2.010000e-52 217.0
33 TraesCS7D01G518300 chr5D 91.525 59 3 2 2749 2807 41621044 41620988 2.750000e-11 80.5
34 TraesCS7D01G518300 chr5D 92.857 56 2 2 2751 2804 558347329 558347384 2.750000e-11 80.5
35 TraesCS7D01G518300 chr5D 92.727 55 3 1 2753 2807 486817946 486817893 9.870000e-11 78.7
36 TraesCS7D01G518300 chr5D 88.710 62 6 1 2747 2807 539999681 539999620 1.280000e-09 75.0
37 TraesCS7D01G518300 chr4D 92.727 55 4 0 2753 2807 441813640 441813586 2.750000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G518300 chr7D 616928409 616931728 3319 False 6131.00 6131 100.0000 1 3320 1 chr7D.!!$F1 3319
1 TraesCS7D01G518300 chr7D 616942932 616943839 907 False 569.00 569 78.7530 598 1512 1 chr7D.!!$F2 914
2 TraesCS7D01G518300 chr7A 709677288 709681821 4533 False 885.25 1993 91.0585 437 3320 4 chr7A.!!$F5 2883
3 TraesCS7D01G518300 chr7A 709697619 709698527 908 False 499.00 499 77.4260 598 1512 1 chr7A.!!$F2 914
4 TraesCS7D01G518300 chr7B 711004552 711005784 1232 False 1801.00 1801 93.0420 437 1669 1 chr7B.!!$F1 1232
5 TraesCS7D01G518300 chr7B 711031996 711033174 1178 False 1308.00 1308 87.0430 1991 3164 1 chr7B.!!$F2 1173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.179012 TTGAAACCGGGTCCAGTTCC 60.179 55.0 6.32 0.00 0.00 3.62 F
281 282 0.179012 GAAACCGGGTCCAGTTCCAA 60.179 55.0 6.32 0.00 0.00 3.53 F
291 292 0.322187 CCAGTTCCAACCCGGTTAGG 60.322 60.0 1.43 7.40 40.63 2.69 F
296 297 0.621609 TCCAACCCGGTTAGGATTGG 59.378 55.0 14.19 3.88 45.00 3.16 F
1947 1996 0.624254 TCTAGGGAGGTGAGCTTCGA 59.376 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 1231 0.110823 CCTTGTTCGTTTCGCCTTCG 60.111 55.000 0.0 0.0 0.00 3.79 R
2194 2300 0.328258 AGCCCTTACCAGCAACGATT 59.672 50.000 0.0 0.0 0.00 3.34 R
2265 2371 4.421058 TCGTGGAATCTACATGACGAAAG 58.579 43.478 0.0 0.0 33.24 2.62 R
2295 2401 1.336887 CCACAACAGGTACGAGTGAGG 60.337 57.143 0.0 0.0 32.14 3.86 R
3083 3229 1.632589 TGCTCTCACTAAGCTGGTCA 58.367 50.000 0.0 0.0 40.50 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.234530 GGTACGAGTGTAAGTTCTGTGT 57.765 45.455 0.00 0.00 30.94 3.72
28 29 5.362556 GGTACGAGTGTAAGTTCTGTGTA 57.637 43.478 0.00 0.00 30.94 2.90
29 30 5.762045 GGTACGAGTGTAAGTTCTGTGTAA 58.238 41.667 0.00 0.00 30.94 2.41
30 31 6.208644 GGTACGAGTGTAAGTTCTGTGTAAA 58.791 40.000 0.00 0.00 30.94 2.01
31 32 6.865205 GGTACGAGTGTAAGTTCTGTGTAAAT 59.135 38.462 0.00 0.00 30.94 1.40
32 33 6.764877 ACGAGTGTAAGTTCTGTGTAAATG 57.235 37.500 0.00 0.00 0.00 2.32
33 34 5.176958 ACGAGTGTAAGTTCTGTGTAAATGC 59.823 40.000 0.00 0.00 0.00 3.56
34 35 5.176774 CGAGTGTAAGTTCTGTGTAAATGCA 59.823 40.000 0.00 0.00 0.00 3.96
35 36 6.300354 AGTGTAAGTTCTGTGTAAATGCAC 57.700 37.500 0.00 0.00 39.65 4.57
36 37 6.055588 AGTGTAAGTTCTGTGTAAATGCACT 58.944 36.000 0.00 0.00 39.89 4.40
37 38 6.017934 AGTGTAAGTTCTGTGTAAATGCACTG 60.018 38.462 0.00 3.10 39.89 3.66
38 39 5.820423 TGTAAGTTCTGTGTAAATGCACTGT 59.180 36.000 0.00 0.00 39.89 3.55
39 40 6.987404 TGTAAGTTCTGTGTAAATGCACTGTA 59.013 34.615 0.00 0.00 39.89 2.74
40 41 6.935741 AAGTTCTGTGTAAATGCACTGTAA 57.064 33.333 0.00 0.00 39.89 2.41
41 42 7.510549 AAGTTCTGTGTAAATGCACTGTAAT 57.489 32.000 0.00 0.00 39.89 1.89
42 43 7.510549 AGTTCTGTGTAAATGCACTGTAATT 57.489 32.000 0.00 0.00 39.89 1.40
43 44 7.584987 AGTTCTGTGTAAATGCACTGTAATTC 58.415 34.615 0.00 0.00 39.89 2.17
44 45 7.445402 AGTTCTGTGTAAATGCACTGTAATTCT 59.555 33.333 0.00 0.00 39.89 2.40
45 46 8.717821 GTTCTGTGTAAATGCACTGTAATTCTA 58.282 33.333 0.00 0.00 39.89 2.10
46 47 8.479313 TCTGTGTAAATGCACTGTAATTCTAG 57.521 34.615 0.00 0.00 39.89 2.43
47 48 8.311109 TCTGTGTAAATGCACTGTAATTCTAGA 58.689 33.333 0.00 0.00 39.89 2.43
48 49 8.840833 TGTGTAAATGCACTGTAATTCTAGAA 57.159 30.769 7.82 7.82 39.89 2.10
49 50 8.935844 TGTGTAAATGCACTGTAATTCTAGAAG 58.064 33.333 11.53 0.00 39.89 2.85
50 51 8.936864 GTGTAAATGCACTGTAATTCTAGAAGT 58.063 33.333 11.53 11.09 36.51 3.01
51 52 9.502091 TGTAAATGCACTGTAATTCTAGAAGTT 57.498 29.630 11.16 7.85 0.00 2.66
52 53 9.974750 GTAAATGCACTGTAATTCTAGAAGTTC 57.025 33.333 11.16 6.68 0.00 3.01
53 54 7.617041 AATGCACTGTAATTCTAGAAGTTCC 57.383 36.000 11.16 3.30 0.00 3.62
54 55 6.109156 TGCACTGTAATTCTAGAAGTTCCA 57.891 37.500 11.16 7.63 0.00 3.53
55 56 6.166279 TGCACTGTAATTCTAGAAGTTCCAG 58.834 40.000 21.19 21.19 0.00 3.86
56 57 6.166982 GCACTGTAATTCTAGAAGTTCCAGT 58.833 40.000 22.09 22.09 33.10 4.00
57 58 6.091441 GCACTGTAATTCTAGAAGTTCCAGTG 59.909 42.308 33.53 33.53 42.80 3.66
58 59 6.091441 CACTGTAATTCTAGAAGTTCCAGTGC 59.909 42.308 30.70 9.34 38.72 4.40
59 60 6.014156 ACTGTAATTCTAGAAGTTCCAGTGCT 60.014 38.462 24.81 10.40 32.32 4.40
60 61 7.178628 ACTGTAATTCTAGAAGTTCCAGTGCTA 59.821 37.037 24.81 1.05 32.32 3.49
61 62 7.903145 TGTAATTCTAGAAGTTCCAGTGCTAA 58.097 34.615 11.16 0.00 0.00 3.09
62 63 8.540388 TGTAATTCTAGAAGTTCCAGTGCTAAT 58.460 33.333 11.16 0.00 0.00 1.73
63 64 9.384764 GTAATTCTAGAAGTTCCAGTGCTAATT 57.615 33.333 11.16 0.90 0.00 1.40
64 65 8.870075 AATTCTAGAAGTTCCAGTGCTAATTT 57.130 30.769 11.53 0.00 0.00 1.82
65 66 7.672983 TTCTAGAAGTTCCAGTGCTAATTTG 57.327 36.000 0.00 0.00 0.00 2.32
66 67 7.004555 TCTAGAAGTTCCAGTGCTAATTTGA 57.995 36.000 0.00 0.00 0.00 2.69
67 68 5.948992 AGAAGTTCCAGTGCTAATTTGAC 57.051 39.130 0.00 0.00 0.00 3.18
68 69 5.625150 AGAAGTTCCAGTGCTAATTTGACT 58.375 37.500 0.00 0.00 0.00 3.41
69 70 6.064717 AGAAGTTCCAGTGCTAATTTGACTT 58.935 36.000 0.00 0.00 0.00 3.01
70 71 5.695851 AGTTCCAGTGCTAATTTGACTTG 57.304 39.130 0.00 0.00 0.00 3.16
71 72 4.022849 AGTTCCAGTGCTAATTTGACTTGC 60.023 41.667 0.00 0.00 0.00 4.01
72 73 3.485394 TCCAGTGCTAATTTGACTTGCA 58.515 40.909 0.00 0.00 0.00 4.08
73 74 3.888323 TCCAGTGCTAATTTGACTTGCAA 59.112 39.130 0.00 0.00 35.34 4.08
110 111 6.262193 AGACTTCAACTCTAAGTAGACTGC 57.738 41.667 0.00 0.00 37.31 4.40
111 112 5.770663 AGACTTCAACTCTAAGTAGACTGCA 59.229 40.000 0.00 0.00 37.31 4.41
112 113 6.265649 AGACTTCAACTCTAAGTAGACTGCAA 59.734 38.462 0.00 0.00 37.31 4.08
113 114 6.451393 ACTTCAACTCTAAGTAGACTGCAAG 58.549 40.000 0.00 0.00 35.44 4.01
114 115 6.041069 ACTTCAACTCTAAGTAGACTGCAAGT 59.959 38.462 0.00 0.00 42.48 3.16
115 116 7.418025 ACTTCAACTCTAAGTAGACTGCAAGTT 60.418 37.037 0.00 0.00 40.81 2.66
128 129 2.862541 TGCAAGTTACCAGCAGATTGT 58.137 42.857 0.00 0.00 33.75 2.71
129 130 4.014569 TGCAAGTTACCAGCAGATTGTA 57.985 40.909 0.00 0.00 33.75 2.41
130 131 4.393834 TGCAAGTTACCAGCAGATTGTAA 58.606 39.130 0.00 0.00 33.75 2.41
131 132 5.009631 TGCAAGTTACCAGCAGATTGTAAT 58.990 37.500 0.00 0.00 33.75 1.89
132 133 5.106197 TGCAAGTTACCAGCAGATTGTAATG 60.106 40.000 0.00 0.00 33.75 1.90
133 134 5.677091 GCAAGTTACCAGCAGATTGTAATGG 60.677 44.000 0.00 0.00 37.07 3.16
134 135 3.947834 AGTTACCAGCAGATTGTAATGGC 59.052 43.478 0.00 0.00 34.24 4.40
135 136 1.382522 ACCAGCAGATTGTAATGGCG 58.617 50.000 0.00 0.00 34.24 5.69
136 137 0.664761 CCAGCAGATTGTAATGGCGG 59.335 55.000 0.00 0.00 0.00 6.13
137 138 1.382522 CAGCAGATTGTAATGGCGGT 58.617 50.000 0.00 0.00 0.00 5.68
138 139 1.331756 CAGCAGATTGTAATGGCGGTC 59.668 52.381 0.00 0.00 0.00 4.79
139 140 1.210478 AGCAGATTGTAATGGCGGTCT 59.790 47.619 0.00 0.00 0.00 3.85
140 141 2.434336 AGCAGATTGTAATGGCGGTCTA 59.566 45.455 0.00 0.00 0.00 2.59
141 142 3.118408 AGCAGATTGTAATGGCGGTCTAA 60.118 43.478 0.00 0.00 0.00 2.10
142 143 3.815401 GCAGATTGTAATGGCGGTCTAAT 59.185 43.478 0.00 0.00 0.00 1.73
143 144 4.275936 GCAGATTGTAATGGCGGTCTAATT 59.724 41.667 0.00 0.00 0.00 1.40
144 145 5.468746 GCAGATTGTAATGGCGGTCTAATTA 59.531 40.000 0.00 0.00 0.00 1.40
145 146 6.149474 GCAGATTGTAATGGCGGTCTAATTAT 59.851 38.462 0.00 0.00 0.00 1.28
146 147 7.624344 GCAGATTGTAATGGCGGTCTAATTATC 60.624 40.741 0.00 0.00 0.00 1.75
147 148 7.387673 CAGATTGTAATGGCGGTCTAATTATCA 59.612 37.037 0.00 0.00 0.00 2.15
148 149 6.854496 TTGTAATGGCGGTCTAATTATCAC 57.146 37.500 0.00 0.00 0.00 3.06
149 150 6.169557 TGTAATGGCGGTCTAATTATCACT 57.830 37.500 0.00 0.00 0.00 3.41
150 151 5.989168 TGTAATGGCGGTCTAATTATCACTG 59.011 40.000 0.00 0.00 0.00 3.66
151 152 2.833794 TGGCGGTCTAATTATCACTGC 58.166 47.619 15.60 15.60 41.03 4.40
152 153 2.169561 TGGCGGTCTAATTATCACTGCA 59.830 45.455 21.53 10.95 43.15 4.41
153 154 3.202906 GGCGGTCTAATTATCACTGCAA 58.797 45.455 21.53 0.00 43.15 4.08
154 155 3.815401 GGCGGTCTAATTATCACTGCAAT 59.185 43.478 21.53 0.00 43.15 3.56
155 156 4.275936 GGCGGTCTAATTATCACTGCAATT 59.724 41.667 21.53 0.00 43.15 2.32
156 157 5.221048 GGCGGTCTAATTATCACTGCAATTT 60.221 40.000 21.53 0.00 43.15 1.82
157 158 6.265577 GCGGTCTAATTATCACTGCAATTTT 58.734 36.000 17.72 0.00 41.34 1.82
158 159 6.414987 GCGGTCTAATTATCACTGCAATTTTC 59.585 38.462 17.72 0.00 41.34 2.29
159 160 7.679638 GCGGTCTAATTATCACTGCAATTTTCT 60.680 37.037 17.72 0.00 41.34 2.52
160 161 7.852945 CGGTCTAATTATCACTGCAATTTTCTC 59.147 37.037 0.00 0.00 0.00 2.87
161 162 8.131731 GGTCTAATTATCACTGCAATTTTCTCC 58.868 37.037 0.00 0.00 0.00 3.71
162 163 8.131731 GTCTAATTATCACTGCAATTTTCTCCC 58.868 37.037 0.00 0.00 0.00 4.30
163 164 6.855763 AATTATCACTGCAATTTTCTCCCA 57.144 33.333 0.00 0.00 0.00 4.37
164 165 6.855763 ATTATCACTGCAATTTTCTCCCAA 57.144 33.333 0.00 0.00 0.00 4.12
165 166 6.662865 TTATCACTGCAATTTTCTCCCAAA 57.337 33.333 0.00 0.00 0.00 3.28
166 167 5.750352 ATCACTGCAATTTTCTCCCAAAT 57.250 34.783 0.00 0.00 0.00 2.32
167 168 4.885413 TCACTGCAATTTTCTCCCAAATG 58.115 39.130 0.00 0.00 0.00 2.32
168 169 4.588106 TCACTGCAATTTTCTCCCAAATGA 59.412 37.500 0.00 0.00 0.00 2.57
169 170 4.687483 CACTGCAATTTTCTCCCAAATGAC 59.313 41.667 0.00 0.00 0.00 3.06
170 171 4.590222 ACTGCAATTTTCTCCCAAATGACT 59.410 37.500 0.00 0.00 0.00 3.41
171 172 4.885413 TGCAATTTTCTCCCAAATGACTG 58.115 39.130 0.00 0.00 0.00 3.51
172 173 4.344679 TGCAATTTTCTCCCAAATGACTGT 59.655 37.500 0.00 0.00 0.00 3.55
173 174 5.538053 TGCAATTTTCTCCCAAATGACTGTA 59.462 36.000 0.00 0.00 0.00 2.74
174 175 6.041409 TGCAATTTTCTCCCAAATGACTGTAA 59.959 34.615 0.00 0.00 0.00 2.41
175 176 6.587608 GCAATTTTCTCCCAAATGACTGTAAG 59.412 38.462 0.00 0.00 42.29 2.34
192 193 4.552355 TGTAAGTGGACTGTATGTTGACG 58.448 43.478 0.00 0.00 0.00 4.35
193 194 2.080286 AGTGGACTGTATGTTGACGC 57.920 50.000 0.00 0.00 0.00 5.19
194 195 1.076332 GTGGACTGTATGTTGACGCC 58.924 55.000 0.00 0.00 0.00 5.68
195 196 0.682292 TGGACTGTATGTTGACGCCA 59.318 50.000 0.00 0.00 0.00 5.69
196 197 1.076332 GGACTGTATGTTGACGCCAC 58.924 55.000 0.00 0.00 0.00 5.01
197 198 1.337823 GGACTGTATGTTGACGCCACT 60.338 52.381 0.00 0.00 0.00 4.00
198 199 1.726791 GACTGTATGTTGACGCCACTG 59.273 52.381 0.00 0.00 0.00 3.66
199 200 1.343142 ACTGTATGTTGACGCCACTGA 59.657 47.619 0.00 0.00 0.00 3.41
200 201 2.028112 ACTGTATGTTGACGCCACTGAT 60.028 45.455 0.00 0.00 0.00 2.90
201 202 2.345876 TGTATGTTGACGCCACTGATG 58.654 47.619 0.00 0.00 0.00 3.07
202 203 1.062587 GTATGTTGACGCCACTGATGC 59.937 52.381 0.00 0.00 0.00 3.91
203 204 1.308069 ATGTTGACGCCACTGATGCC 61.308 55.000 0.00 0.00 0.00 4.40
204 205 1.965930 GTTGACGCCACTGATGCCA 60.966 57.895 0.00 0.00 0.00 4.92
205 206 1.672030 TTGACGCCACTGATGCCAG 60.672 57.895 0.00 0.00 45.76 4.85
206 207 2.110757 TTGACGCCACTGATGCCAGA 62.111 55.000 0.00 0.00 43.02 3.86
207 208 2.046892 ACGCCACTGATGCCAGAC 60.047 61.111 0.00 0.00 43.02 3.51
208 209 2.821366 CGCCACTGATGCCAGACC 60.821 66.667 0.00 0.00 43.02 3.85
209 210 2.673523 GCCACTGATGCCAGACCT 59.326 61.111 0.00 0.00 43.02 3.85
210 211 1.907739 GCCACTGATGCCAGACCTA 59.092 57.895 0.00 0.00 43.02 3.08
211 212 0.462759 GCCACTGATGCCAGACCTAC 60.463 60.000 0.00 0.00 43.02 3.18
212 213 0.904649 CCACTGATGCCAGACCTACA 59.095 55.000 0.00 0.00 43.02 2.74
213 214 1.278985 CCACTGATGCCAGACCTACAA 59.721 52.381 0.00 0.00 43.02 2.41
214 215 2.290260 CCACTGATGCCAGACCTACAAA 60.290 50.000 0.00 0.00 43.02 2.83
215 216 2.744202 CACTGATGCCAGACCTACAAAC 59.256 50.000 0.00 0.00 43.02 2.93
216 217 2.371841 ACTGATGCCAGACCTACAAACA 59.628 45.455 0.00 0.00 43.02 2.83
217 218 3.181445 ACTGATGCCAGACCTACAAACAA 60.181 43.478 0.00 0.00 43.02 2.83
218 219 4.012374 CTGATGCCAGACCTACAAACAAT 58.988 43.478 0.00 0.00 43.02 2.71
219 220 5.172687 TGATGCCAGACCTACAAACAATA 57.827 39.130 0.00 0.00 0.00 1.90
220 221 5.185454 TGATGCCAGACCTACAAACAATAG 58.815 41.667 0.00 0.00 0.00 1.73
221 222 3.950397 TGCCAGACCTACAAACAATAGG 58.050 45.455 0.00 0.00 44.29 2.57
231 232 7.264373 CCTACAAACAATAGGTTGATGGATC 57.736 40.000 0.00 0.00 40.35 3.36
232 233 7.056635 CCTACAAACAATAGGTTGATGGATCT 58.943 38.462 0.00 0.00 40.35 2.75
233 234 6.764308 ACAAACAATAGGTTGATGGATCTG 57.236 37.500 0.00 0.00 40.35 2.90
234 235 6.248433 ACAAACAATAGGTTGATGGATCTGT 58.752 36.000 0.00 0.00 40.35 3.41
235 236 7.402054 ACAAACAATAGGTTGATGGATCTGTA 58.598 34.615 0.00 0.00 40.35 2.74
236 237 7.554118 ACAAACAATAGGTTGATGGATCTGTAG 59.446 37.037 0.00 0.00 40.35 2.74
237 238 6.179906 ACAATAGGTTGATGGATCTGTAGG 57.820 41.667 0.00 0.00 38.71 3.18
238 239 5.072329 ACAATAGGTTGATGGATCTGTAGGG 59.928 44.000 0.00 0.00 38.71 3.53
239 240 1.771255 AGGTTGATGGATCTGTAGGGC 59.229 52.381 0.00 0.00 0.00 5.19
240 241 1.771255 GGTTGATGGATCTGTAGGGCT 59.229 52.381 0.00 0.00 0.00 5.19
241 242 2.173569 GGTTGATGGATCTGTAGGGCTT 59.826 50.000 0.00 0.00 0.00 4.35
242 243 3.372025 GGTTGATGGATCTGTAGGGCTTT 60.372 47.826 0.00 0.00 0.00 3.51
243 244 4.273318 GTTGATGGATCTGTAGGGCTTTT 58.727 43.478 0.00 0.00 0.00 2.27
244 245 4.591321 TGATGGATCTGTAGGGCTTTTT 57.409 40.909 0.00 0.00 0.00 1.94
266 267 7.532682 TTTTAGGCTCACATTTGTTTGAAAC 57.467 32.000 0.14 0.14 0.00 2.78
267 268 4.058721 AGGCTCACATTTGTTTGAAACC 57.941 40.909 5.50 0.00 0.00 3.27
268 269 2.794350 GGCTCACATTTGTTTGAAACCG 59.206 45.455 5.50 0.00 0.00 4.44
269 270 2.794350 GCTCACATTTGTTTGAAACCGG 59.206 45.455 5.50 0.00 0.00 5.28
270 271 3.380142 CTCACATTTGTTTGAAACCGGG 58.620 45.455 6.32 0.00 0.00 5.73
271 272 2.761208 TCACATTTGTTTGAAACCGGGT 59.239 40.909 6.32 0.00 0.00 5.28
272 273 3.120041 CACATTTGTTTGAAACCGGGTC 58.880 45.455 6.32 2.93 0.00 4.46
273 274 2.101750 ACATTTGTTTGAAACCGGGTCC 59.898 45.455 6.32 0.00 0.00 4.46
274 275 1.848652 TTTGTTTGAAACCGGGTCCA 58.151 45.000 6.32 0.00 0.00 4.02
275 276 1.394618 TTGTTTGAAACCGGGTCCAG 58.605 50.000 6.32 0.00 0.00 3.86
276 277 0.256464 TGTTTGAAACCGGGTCCAGT 59.744 50.000 6.32 0.00 0.00 4.00
277 278 1.341187 TGTTTGAAACCGGGTCCAGTT 60.341 47.619 6.32 0.00 0.00 3.16
278 279 1.335810 GTTTGAAACCGGGTCCAGTTC 59.664 52.381 6.32 0.79 0.00 3.01
279 280 0.179012 TTGAAACCGGGTCCAGTTCC 60.179 55.000 6.32 0.00 0.00 3.62
280 281 1.346479 TGAAACCGGGTCCAGTTCCA 61.346 55.000 6.32 0.00 0.00 3.53
281 282 0.179012 GAAACCGGGTCCAGTTCCAA 60.179 55.000 6.32 0.00 0.00 3.53
282 283 0.466739 AAACCGGGTCCAGTTCCAAC 60.467 55.000 6.32 0.00 0.00 3.77
283 284 2.033602 CCGGGTCCAGTTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
285 286 2.033602 GGGTCCAGTTCCAACCCG 59.966 66.667 0.00 0.00 43.08 5.28
286 287 2.033602 GGTCCAGTTCCAACCCGG 59.966 66.667 0.00 0.00 0.00 5.73
287 288 2.826003 GGTCCAGTTCCAACCCGGT 61.826 63.158 0.00 0.00 35.57 5.28
288 289 1.149854 GTCCAGTTCCAACCCGGTT 59.850 57.895 0.00 0.00 35.57 4.44
289 290 0.397564 GTCCAGTTCCAACCCGGTTA 59.602 55.000 1.43 0.00 35.57 2.85
290 291 0.688487 TCCAGTTCCAACCCGGTTAG 59.312 55.000 1.43 0.00 35.57 2.34
291 292 0.322187 CCAGTTCCAACCCGGTTAGG 60.322 60.000 1.43 7.40 40.63 2.69
292 293 0.688487 CAGTTCCAACCCGGTTAGGA 59.312 55.000 14.19 14.19 45.00 2.94
293 294 1.280998 CAGTTCCAACCCGGTTAGGAT 59.719 52.381 17.24 5.97 45.00 3.24
294 295 1.990327 AGTTCCAACCCGGTTAGGATT 59.010 47.619 17.24 9.67 45.00 3.01
295 296 2.089201 GTTCCAACCCGGTTAGGATTG 58.911 52.381 17.24 1.05 45.00 2.67
296 297 0.621609 TCCAACCCGGTTAGGATTGG 59.378 55.000 14.19 3.88 45.00 3.16
297 298 1.035385 CCAACCCGGTTAGGATTGGC 61.035 60.000 1.43 0.00 45.00 4.52
298 299 1.035385 CAACCCGGTTAGGATTGGCC 61.035 60.000 1.43 0.00 45.00 5.36
311 312 3.785486 GGATTGGCCTTTTAGCATTGAC 58.215 45.455 3.32 0.00 0.00 3.18
312 313 3.195396 GGATTGGCCTTTTAGCATTGACA 59.805 43.478 3.32 0.00 0.00 3.58
313 314 4.141869 GGATTGGCCTTTTAGCATTGACAT 60.142 41.667 3.32 0.00 0.00 3.06
314 315 3.872511 TGGCCTTTTAGCATTGACATG 57.127 42.857 3.32 0.00 0.00 3.21
333 334 2.509052 GCACATAGCGGAGATACACA 57.491 50.000 0.00 0.00 0.00 3.72
334 335 2.821546 GCACATAGCGGAGATACACAA 58.178 47.619 0.00 0.00 0.00 3.33
335 336 3.194861 GCACATAGCGGAGATACACAAA 58.805 45.455 0.00 0.00 0.00 2.83
336 337 3.621268 GCACATAGCGGAGATACACAAAA 59.379 43.478 0.00 0.00 0.00 2.44
337 338 4.094294 GCACATAGCGGAGATACACAAAAA 59.906 41.667 0.00 0.00 0.00 1.94
338 339 5.727791 GCACATAGCGGAGATACACAAAAAG 60.728 44.000 0.00 0.00 0.00 2.27
339 340 4.876107 ACATAGCGGAGATACACAAAAAGG 59.124 41.667 0.00 0.00 0.00 3.11
340 341 3.695830 AGCGGAGATACACAAAAAGGA 57.304 42.857 0.00 0.00 0.00 3.36
341 342 3.600388 AGCGGAGATACACAAAAAGGAG 58.400 45.455 0.00 0.00 0.00 3.69
342 343 3.260884 AGCGGAGATACACAAAAAGGAGA 59.739 43.478 0.00 0.00 0.00 3.71
343 344 3.371285 GCGGAGATACACAAAAAGGAGAC 59.629 47.826 0.00 0.00 0.00 3.36
344 345 3.612860 CGGAGATACACAAAAAGGAGACG 59.387 47.826 0.00 0.00 0.00 4.18
345 346 3.371285 GGAGATACACAAAAAGGAGACGC 59.629 47.826 0.00 0.00 0.00 5.19
346 347 3.994392 GAGATACACAAAAAGGAGACGCA 59.006 43.478 0.00 0.00 0.00 5.24
347 348 3.746492 AGATACACAAAAAGGAGACGCAC 59.254 43.478 0.00 0.00 0.00 5.34
348 349 1.745232 ACACAAAAAGGAGACGCACA 58.255 45.000 0.00 0.00 0.00 4.57
349 350 2.088423 ACACAAAAAGGAGACGCACAA 58.912 42.857 0.00 0.00 0.00 3.33
350 351 2.490115 ACACAAAAAGGAGACGCACAAA 59.510 40.909 0.00 0.00 0.00 2.83
351 352 3.130340 ACACAAAAAGGAGACGCACAAAT 59.870 39.130 0.00 0.00 0.00 2.32
352 353 4.336993 ACACAAAAAGGAGACGCACAAATA 59.663 37.500 0.00 0.00 0.00 1.40
353 354 4.675114 CACAAAAAGGAGACGCACAAATAC 59.325 41.667 0.00 0.00 0.00 1.89
354 355 3.806316 AAAAGGAGACGCACAAATACG 57.194 42.857 0.00 0.00 0.00 3.06
355 356 2.450609 AAGGAGACGCACAAATACGT 57.549 45.000 0.00 0.00 46.91 3.57
356 357 3.581024 AAGGAGACGCACAAATACGTA 57.419 42.857 0.00 0.00 43.71 3.57
357 358 2.872370 AGGAGACGCACAAATACGTAC 58.128 47.619 0.00 0.00 43.71 3.67
358 359 2.229543 AGGAGACGCACAAATACGTACA 59.770 45.455 0.00 0.00 43.71 2.90
359 360 2.988493 GGAGACGCACAAATACGTACAA 59.012 45.455 0.00 0.00 43.71 2.41
360 361 3.060363 GGAGACGCACAAATACGTACAAG 59.940 47.826 0.00 0.00 43.71 3.16
361 362 3.645884 AGACGCACAAATACGTACAAGT 58.354 40.909 0.00 0.00 43.71 3.16
362 363 3.427528 AGACGCACAAATACGTACAAGTG 59.572 43.478 15.05 15.05 43.71 3.16
363 364 3.125316 ACGCACAAATACGTACAAGTGT 58.875 40.909 18.47 9.57 41.48 3.55
364 365 3.182972 ACGCACAAATACGTACAAGTGTC 59.817 43.478 18.47 12.45 41.48 3.67
365 366 3.716891 CGCACAAATACGTACAAGTGTCG 60.717 47.826 18.47 17.50 0.00 4.35
366 367 3.182972 GCACAAATACGTACAAGTGTCGT 59.817 43.478 18.47 11.63 40.78 4.34
367 368 4.662394 GCACAAATACGTACAAGTGTCGTC 60.662 45.833 18.47 4.74 38.69 4.20
368 369 3.983344 ACAAATACGTACAAGTGTCGTCC 59.017 43.478 0.00 0.00 38.69 4.79
369 370 4.232221 CAAATACGTACAAGTGTCGTCCT 58.768 43.478 0.00 1.34 38.69 3.85
370 371 5.048782 ACAAATACGTACAAGTGTCGTCCTA 60.049 40.000 0.00 0.00 38.69 2.94
371 372 5.824904 AATACGTACAAGTGTCGTCCTAT 57.175 39.130 0.00 0.80 38.69 2.57
372 373 5.824904 ATACGTACAAGTGTCGTCCTATT 57.175 39.130 0.00 0.00 38.69 1.73
373 374 6.925610 ATACGTACAAGTGTCGTCCTATTA 57.074 37.500 0.00 0.00 38.69 0.98
374 375 5.824904 ACGTACAAGTGTCGTCCTATTAT 57.175 39.130 0.00 0.00 32.26 1.28
375 376 6.199937 ACGTACAAGTGTCGTCCTATTATT 57.800 37.500 0.00 0.00 32.26 1.40
376 377 6.032094 ACGTACAAGTGTCGTCCTATTATTG 58.968 40.000 0.00 0.00 32.26 1.90
377 378 5.457799 CGTACAAGTGTCGTCCTATTATTGG 59.542 44.000 0.00 0.00 0.00 3.16
378 379 5.416271 ACAAGTGTCGTCCTATTATTGGT 57.584 39.130 0.00 0.00 0.00 3.67
379 380 5.801380 ACAAGTGTCGTCCTATTATTGGTT 58.199 37.500 0.00 0.00 0.00 3.67
380 381 5.642063 ACAAGTGTCGTCCTATTATTGGTTG 59.358 40.000 0.00 0.00 0.00 3.77
381 382 4.766375 AGTGTCGTCCTATTATTGGTTGG 58.234 43.478 0.00 0.00 0.00 3.77
382 383 4.468510 AGTGTCGTCCTATTATTGGTTGGA 59.531 41.667 0.00 0.00 0.00 3.53
383 384 5.046159 AGTGTCGTCCTATTATTGGTTGGAA 60.046 40.000 0.00 0.00 0.00 3.53
384 385 5.644636 GTGTCGTCCTATTATTGGTTGGAAA 59.355 40.000 0.00 0.00 0.00 3.13
385 386 6.149807 GTGTCGTCCTATTATTGGTTGGAAAA 59.850 38.462 0.00 0.00 0.00 2.29
386 387 6.149807 TGTCGTCCTATTATTGGTTGGAAAAC 59.850 38.462 0.00 0.00 0.00 2.43
387 388 6.373495 GTCGTCCTATTATTGGTTGGAAAACT 59.627 38.462 0.00 0.00 32.01 2.66
388 389 6.943718 TCGTCCTATTATTGGTTGGAAAACTT 59.056 34.615 0.00 0.00 32.01 2.66
389 390 7.027161 CGTCCTATTATTGGTTGGAAAACTTG 58.973 38.462 0.00 0.00 32.01 3.16
390 391 7.094549 CGTCCTATTATTGGTTGGAAAACTTGA 60.095 37.037 0.00 0.00 32.01 3.02
391 392 8.027189 GTCCTATTATTGGTTGGAAAACTTGAC 58.973 37.037 0.00 0.00 32.01 3.18
392 393 7.947890 TCCTATTATTGGTTGGAAAACTTGACT 59.052 33.333 0.00 0.00 32.01 3.41
393 394 8.028938 CCTATTATTGGTTGGAAAACTTGACTG 58.971 37.037 0.00 0.00 32.01 3.51
394 395 7.595819 ATTATTGGTTGGAAAACTTGACTGA 57.404 32.000 0.00 0.00 32.01 3.41
395 396 7.595819 TTATTGGTTGGAAAACTTGACTGAT 57.404 32.000 0.00 0.00 32.01 2.90
396 397 4.916983 TGGTTGGAAAACTTGACTGATG 57.083 40.909 0.00 0.00 32.01 3.07
397 398 3.068024 TGGTTGGAAAACTTGACTGATGC 59.932 43.478 0.00 0.00 32.01 3.91
398 399 3.552890 GGTTGGAAAACTTGACTGATGCC 60.553 47.826 0.00 0.00 0.00 4.40
399 400 2.238521 TGGAAAACTTGACTGATGCCC 58.761 47.619 0.00 0.00 0.00 5.36
400 401 2.238521 GGAAAACTTGACTGATGCCCA 58.761 47.619 0.00 0.00 0.00 5.36
401 402 2.627699 GGAAAACTTGACTGATGCCCAA 59.372 45.455 0.00 0.00 0.00 4.12
402 403 3.069443 GGAAAACTTGACTGATGCCCAAA 59.931 43.478 0.00 0.00 0.00 3.28
403 404 4.262592 GGAAAACTTGACTGATGCCCAAAT 60.263 41.667 0.00 0.00 0.00 2.32
404 405 3.947910 AACTTGACTGATGCCCAAATG 57.052 42.857 0.00 0.00 0.00 2.32
405 406 3.159213 ACTTGACTGATGCCCAAATGA 57.841 42.857 0.00 0.00 0.00 2.57
406 407 3.705051 ACTTGACTGATGCCCAAATGAT 58.295 40.909 0.00 0.00 0.00 2.45
407 408 4.091549 ACTTGACTGATGCCCAAATGATT 58.908 39.130 0.00 0.00 0.00 2.57
408 409 4.529377 ACTTGACTGATGCCCAAATGATTT 59.471 37.500 0.00 0.00 0.00 2.17
409 410 5.012354 ACTTGACTGATGCCCAAATGATTTT 59.988 36.000 0.00 0.00 0.00 1.82
410 411 5.075858 TGACTGATGCCCAAATGATTTTC 57.924 39.130 0.00 0.00 0.00 2.29
411 412 4.527427 TGACTGATGCCCAAATGATTTTCA 59.473 37.500 0.00 0.00 0.00 2.69
412 413 5.080969 ACTGATGCCCAAATGATTTTCAG 57.919 39.130 12.54 12.54 0.00 3.02
413 414 4.529377 ACTGATGCCCAAATGATTTTCAGT 59.471 37.500 13.55 13.55 0.00 3.41
414 415 5.075858 TGATGCCCAAATGATTTTCAGTC 57.924 39.130 0.00 0.00 0.00 3.51
415 416 4.527427 TGATGCCCAAATGATTTTCAGTCA 59.473 37.500 0.00 0.00 0.00 3.41
416 417 4.952071 TGCCCAAATGATTTTCAGTCAA 57.048 36.364 0.00 0.00 0.00 3.18
417 418 5.287674 TGCCCAAATGATTTTCAGTCAAA 57.712 34.783 0.00 0.00 0.00 2.69
418 419 5.055812 TGCCCAAATGATTTTCAGTCAAAC 58.944 37.500 0.00 0.00 0.00 2.93
419 420 4.150451 GCCCAAATGATTTTCAGTCAAACG 59.850 41.667 0.00 0.00 0.00 3.60
420 421 5.288804 CCCAAATGATTTTCAGTCAAACGT 58.711 37.500 0.00 0.00 0.00 3.99
421 422 5.402270 CCCAAATGATTTTCAGTCAAACGTC 59.598 40.000 0.00 0.00 0.00 4.34
422 423 5.976534 CCAAATGATTTTCAGTCAAACGTCA 59.023 36.000 0.00 0.00 0.00 4.35
423 424 6.475076 CCAAATGATTTTCAGTCAAACGTCAA 59.525 34.615 0.00 0.00 0.00 3.18
424 425 7.009999 CCAAATGATTTTCAGTCAAACGTCAAA 59.990 33.333 0.00 0.00 0.00 2.69
425 426 8.542132 CAAATGATTTTCAGTCAAACGTCAAAT 58.458 29.630 0.00 0.00 0.00 2.32
426 427 9.743057 AAATGATTTTCAGTCAAACGTCAAATA 57.257 25.926 0.00 0.00 0.00 1.40
427 428 8.955061 ATGATTTTCAGTCAAACGTCAAATAG 57.045 30.769 0.00 0.00 0.00 1.73
428 429 8.148807 TGATTTTCAGTCAAACGTCAAATAGA 57.851 30.769 0.00 0.00 0.00 1.98
429 430 8.067784 TGATTTTCAGTCAAACGTCAAATAGAC 58.932 33.333 0.00 0.00 44.02 2.59
481 482 7.520453 CGTTGAGAAATCAACCTCAGATGAAAA 60.520 37.037 13.81 0.00 45.07 2.29
531 534 7.224362 CCATGTTTGTTCAATTTTGCACTCTAA 59.776 33.333 0.00 0.00 0.00 2.10
585 591 9.832445 GTAATATGAAAAAGAGGGAGTGTATCA 57.168 33.333 0.00 0.00 0.00 2.15
587 593 9.566432 AATATGAAAAAGAGGGAGTGTATCATC 57.434 33.333 0.00 0.00 0.00 2.92
726 738 2.182827 CTCTCTCTTCCATCACCCACA 58.817 52.381 0.00 0.00 0.00 4.17
729 741 2.304180 CTCTCTTCCATCACCCACAAGT 59.696 50.000 0.00 0.00 0.00 3.16
732 744 3.515502 CTCTTCCATCACCCACAAGTCTA 59.484 47.826 0.00 0.00 0.00 2.59
1059 1084 2.997315 CTGGTCGCCTCCCTGACA 60.997 66.667 0.00 0.00 36.83 3.58
1355 1382 3.870419 GAGATCTCTTCTGACATTGGCAC 59.130 47.826 15.80 0.00 33.74 5.01
1366 1393 1.024046 CATTGGCACCAATCGTCCGA 61.024 55.000 12.01 0.00 43.92 4.55
1434 1470 0.970427 TGATAGCTCTGTGGCACGGA 60.970 55.000 26.49 26.49 34.17 4.69
1519 1555 1.001706 GTTTTGCTTTCGTCCTCCCAC 60.002 52.381 0.00 0.00 0.00 4.61
1539 1575 4.641094 CCACCTGGCATAATTTTACGGTTA 59.359 41.667 0.00 0.00 0.00 2.85
1598 1634 4.855340 TCTTCCCCACCTAACATGAAATC 58.145 43.478 0.00 0.00 0.00 2.17
1610 1646 5.909621 AACATGAAATCAGGTGATTGAGG 57.090 39.130 5.98 1.50 43.41 3.86
1615 1651 5.982356 TGAAATCAGGTGATTGAGGTCTAG 58.018 41.667 5.98 0.00 43.41 2.43
1640 1677 8.343366 AGAAAAGTTTCTCCGAACTTAATGTTC 58.657 33.333 0.31 4.63 46.23 3.18
1671 1708 7.010023 CGGACATTATAATTTAGCTTCTTCGC 58.990 38.462 0.00 0.00 0.00 4.70
1699 1736 6.072008 ACGAGTCTACCTTTACCTTCTCTTTC 60.072 42.308 0.00 0.00 0.00 2.62
1718 1755 7.701078 TCTCTTTCGTTTAGATTTGAGATACGG 59.299 37.037 0.00 0.00 30.05 4.02
1728 1765 4.996788 TTTGAGATACGGTCTAGGGAAC 57.003 45.455 0.00 0.00 37.29 3.62
1774 1811 8.564574 GTTGTGGTGAGTTAAGATTTATGTGAA 58.435 33.333 0.00 0.00 0.00 3.18
1786 1823 7.350110 AGATTTATGTGAATTTTGTTTGCCG 57.650 32.000 0.00 0.00 0.00 5.69
1790 1827 4.116747 TGTGAATTTTGTTTGCCGAACT 57.883 36.364 0.00 0.00 39.08 3.01
1835 1874 6.584185 TTATTTGACTTCCTTTTGCCTACC 57.416 37.500 0.00 0.00 0.00 3.18
1943 1992 4.697102 GCTCTAGGGAGGTGAGCT 57.303 61.111 0.00 0.00 46.69 4.09
1945 1994 0.750249 GCTCTAGGGAGGTGAGCTTC 59.250 60.000 0.00 0.00 46.69 3.86
1946 1995 1.028905 CTCTAGGGAGGTGAGCTTCG 58.971 60.000 0.00 0.00 36.03 3.79
1947 1996 0.624254 TCTAGGGAGGTGAGCTTCGA 59.376 55.000 0.00 0.00 0.00 3.71
1948 1997 1.028905 CTAGGGAGGTGAGCTTCGAG 58.971 60.000 0.00 0.00 0.00 4.04
1949 1998 1.038130 TAGGGAGGTGAGCTTCGAGC 61.038 60.000 0.00 0.00 42.84 5.03
1968 2044 4.159108 AGGGCGAGGAGTAGGGGG 62.159 72.222 0.00 0.00 0.00 5.40
1970 2046 4.862823 GGCGAGGAGTAGGGGGCT 62.863 72.222 0.00 0.00 0.00 5.19
1979 2055 3.087906 TAGGGGGCTCCTTTCGGC 61.088 66.667 13.42 0.00 45.47 5.54
1995 2100 1.526917 GGCGATGGAACTGGATGGG 60.527 63.158 0.00 0.00 0.00 4.00
2014 2119 3.327757 TGGGGATGACATAGCTTCCATAC 59.672 47.826 0.00 0.00 34.65 2.39
2074 2179 4.783242 CGTCGGTTCTTCAATCATGTTTT 58.217 39.130 0.00 0.00 0.00 2.43
2129 2234 1.817357 CATTGTTGCTGCTCCTGAGA 58.183 50.000 0.00 0.00 0.00 3.27
2146 2251 5.363868 TCCTGAGATCCCTTATATAATGCCG 59.636 44.000 0.00 0.00 0.00 5.69
2159 2265 8.974060 TTATATAATGCCGGAGTTTCTCTTTT 57.026 30.769 5.05 0.00 0.00 2.27
2191 2297 4.851558 GTGTCTTTCAGTGTTGTGTTGAAC 59.148 41.667 0.00 0.00 31.11 3.18
2194 2300 5.000591 TCTTTCAGTGTTGTGTTGAACTGA 58.999 37.500 0.00 0.40 45.43 3.41
2204 2310 3.242706 TGTGTTGAACTGAATCGTTGCTG 60.243 43.478 0.00 0.00 0.00 4.41
2264 2370 7.062749 TCTTTTCTAGAAACTGAGCCTTACA 57.937 36.000 17.51 0.00 0.00 2.41
2265 2371 6.929606 TCTTTTCTAGAAACTGAGCCTTACAC 59.070 38.462 17.51 0.00 0.00 2.90
2273 2379 2.364324 ACTGAGCCTTACACTTTCGTCA 59.636 45.455 0.00 0.00 0.00 4.35
2284 2390 5.147330 ACACTTTCGTCATGTAGATTCCA 57.853 39.130 0.00 0.00 0.00 3.53
2307 2413 3.755628 TGGCGCCTCACTCGTACC 61.756 66.667 29.70 0.00 0.00 3.34
2321 2427 0.105224 CGTACCTGTTGTGGGTGACA 59.895 55.000 0.00 0.00 37.65 3.58
2355 2461 0.396811 AACACCAAGAACCTCTCGGG 59.603 55.000 0.00 0.00 41.89 5.14
2452 2560 3.117663 ACCAAAACCAAGAAGCTGTAGGA 60.118 43.478 0.00 0.00 0.00 2.94
2464 2572 1.178276 CTGTAGGAGTCCTGCTTCGT 58.822 55.000 25.43 0.00 37.16 3.85
2541 2652 1.379146 GGGACTGGGTTGGGAACTC 59.621 63.158 0.00 0.00 0.00 3.01
2584 2719 4.340381 AGAATCAAAGTTTGAAGCAGCAGT 59.660 37.500 21.57 0.42 43.95 4.40
2588 2723 3.705043 AAGTTTGAAGCAGCAGTTGAG 57.295 42.857 0.00 0.00 0.00 3.02
2589 2724 1.952296 AGTTTGAAGCAGCAGTTGAGG 59.048 47.619 0.00 0.00 0.00 3.86
2632 2772 1.799403 GCGATGGATGATGAGCAAGAG 59.201 52.381 0.00 0.00 0.00 2.85
2673 2813 1.407989 GCATTGTCTGGAGAGGAAGGG 60.408 57.143 0.00 0.00 0.00 3.95
2674 2814 2.191400 CATTGTCTGGAGAGGAAGGGA 58.809 52.381 0.00 0.00 0.00 4.20
2903 3046 5.075858 CCGTATGGTTAGGTCTGTTTACA 57.924 43.478 0.00 0.00 0.00 2.41
2958 3101 8.564574 TGTGTTAATTTTGTGCTACTTTCCTAG 58.435 33.333 0.00 0.00 0.00 3.02
2998 3141 3.678056 ATGAAACACGAGGTCTGCTTA 57.322 42.857 0.00 0.00 0.00 3.09
2999 3142 3.026630 TGAAACACGAGGTCTGCTTAG 57.973 47.619 0.00 0.00 0.00 2.18
3001 3144 3.246619 GAAACACGAGGTCTGCTTAGAG 58.753 50.000 0.00 0.00 0.00 2.43
3003 3146 1.178276 CACGAGGTCTGCTTAGAGGT 58.822 55.000 0.00 0.00 0.00 3.85
3007 3150 2.996621 CGAGGTCTGCTTAGAGGTTTTG 59.003 50.000 0.00 0.00 0.00 2.44
3008 3151 2.744741 GAGGTCTGCTTAGAGGTTTTGC 59.255 50.000 0.00 0.00 0.00 3.68
3009 3152 2.106511 AGGTCTGCTTAGAGGTTTTGCA 59.893 45.455 0.00 0.00 0.00 4.08
3010 3153 3.084786 GGTCTGCTTAGAGGTTTTGCAT 58.915 45.455 0.00 0.00 33.02 3.96
3012 3155 3.753272 GTCTGCTTAGAGGTTTTGCATGA 59.247 43.478 0.00 0.00 33.02 3.07
3013 3156 4.216257 GTCTGCTTAGAGGTTTTGCATGAA 59.784 41.667 0.00 0.00 33.02 2.57
3014 3157 5.012239 TCTGCTTAGAGGTTTTGCATGAAT 58.988 37.500 0.00 0.00 33.02 2.57
3015 3158 6.094048 GTCTGCTTAGAGGTTTTGCATGAATA 59.906 38.462 0.00 0.00 33.02 1.75
3016 3159 6.830324 TCTGCTTAGAGGTTTTGCATGAATAT 59.170 34.615 0.00 0.00 33.02 1.28
3017 3160 7.340232 TCTGCTTAGAGGTTTTGCATGAATATT 59.660 33.333 0.00 0.00 33.02 1.28
3018 3161 8.518430 TGCTTAGAGGTTTTGCATGAATATTA 57.482 30.769 0.00 0.00 0.00 0.98
3019 3162 8.965819 TGCTTAGAGGTTTTGCATGAATATTAA 58.034 29.630 0.00 0.00 0.00 1.40
3020 3163 9.971922 GCTTAGAGGTTTTGCATGAATATTAAT 57.028 29.630 0.00 0.00 0.00 1.40
3024 3167 9.822185 AGAGGTTTTGCATGAATATTAATTTCC 57.178 29.630 0.00 0.00 0.00 3.13
3025 3168 8.647143 AGGTTTTGCATGAATATTAATTTCCG 57.353 30.769 0.00 0.00 0.00 4.30
3026 3169 7.710475 AGGTTTTGCATGAATATTAATTTCCGG 59.290 33.333 0.00 0.00 0.00 5.14
3027 3170 7.708752 GGTTTTGCATGAATATTAATTTCCGGA 59.291 33.333 0.00 0.00 0.00 5.14
3032 3175 9.126151 TGCATGAATATTAATTTCCGGAAAGTA 57.874 29.630 31.58 29.84 33.32 2.24
3044 3187 5.913137 TCCGGAAAGTATTTTGCATGAAT 57.087 34.783 0.00 0.00 39.27 2.57
3054 3197 8.285776 AGTATTTTGCATGAATATTAAAGCGC 57.714 30.769 0.00 0.00 0.00 5.92
3097 3243 6.303839 AGGTTTTAAATGACCAGCTTAGTGA 58.696 36.000 10.89 0.00 38.42 3.41
3105 3251 2.739379 GACCAGCTTAGTGAGAGCAAAC 59.261 50.000 0.00 0.00 42.56 2.93
3199 4897 0.538746 GATCTCTCCTCGACCCCTCC 60.539 65.000 0.00 0.00 0.00 4.30
3242 4960 3.339093 CTCCCACAACCCCCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
3245 4963 2.204151 CCACAACCCCCTCCCTCT 60.204 66.667 0.00 0.00 0.00 3.69
3312 5030 3.385384 CTGGAGCCGCAGACCTCA 61.385 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.880890 AGAACTTACACTCGTACCGTGT 59.119 45.455 16.77 16.77 46.45 4.49
3 4 3.231965 CAGAACTTACACTCGTACCGTG 58.768 50.000 8.06 8.06 38.32 4.94
4 5 2.880890 ACAGAACTTACACTCGTACCGT 59.119 45.455 0.00 0.00 0.00 4.83
5 6 3.231965 CACAGAACTTACACTCGTACCG 58.768 50.000 0.00 0.00 0.00 4.02
6 7 4.234530 ACACAGAACTTACACTCGTACC 57.765 45.455 0.00 0.00 0.00 3.34
7 8 7.618751 GCATTTACACAGAACTTACACTCGTAC 60.619 40.741 0.00 0.00 0.00 3.67
8 9 6.364165 GCATTTACACAGAACTTACACTCGTA 59.636 38.462 0.00 0.00 0.00 3.43
9 10 5.176958 GCATTTACACAGAACTTACACTCGT 59.823 40.000 0.00 0.00 0.00 4.18
10 11 5.176774 TGCATTTACACAGAACTTACACTCG 59.823 40.000 0.00 0.00 0.00 4.18
11 12 6.202954 AGTGCATTTACACAGAACTTACACTC 59.797 38.462 0.00 0.00 43.23 3.51
12 13 6.017934 CAGTGCATTTACACAGAACTTACACT 60.018 38.462 0.00 0.00 43.23 3.55
13 14 6.136071 CAGTGCATTTACACAGAACTTACAC 58.864 40.000 0.00 0.00 43.23 2.90
14 15 5.820423 ACAGTGCATTTACACAGAACTTACA 59.180 36.000 0.00 0.00 43.23 2.41
15 16 6.300354 ACAGTGCATTTACACAGAACTTAC 57.700 37.500 0.00 0.00 43.23 2.34
16 17 8.615878 ATTACAGTGCATTTACACAGAACTTA 57.384 30.769 0.00 0.00 43.23 2.24
17 18 6.935741 TTACAGTGCATTTACACAGAACTT 57.064 33.333 0.00 0.00 43.23 2.66
18 19 7.445402 AGAATTACAGTGCATTTACACAGAACT 59.555 33.333 0.00 0.00 43.23 3.01
19 20 7.584987 AGAATTACAGTGCATTTACACAGAAC 58.415 34.615 0.00 0.00 43.23 3.01
20 21 7.744087 AGAATTACAGTGCATTTACACAGAA 57.256 32.000 0.00 0.00 43.23 3.02
21 22 8.311109 TCTAGAATTACAGTGCATTTACACAGA 58.689 33.333 0.00 0.00 43.23 3.41
22 23 8.479313 TCTAGAATTACAGTGCATTTACACAG 57.521 34.615 0.00 0.00 43.23 3.66
23 24 8.840833 TTCTAGAATTACAGTGCATTTACACA 57.159 30.769 0.00 0.00 43.23 3.72
24 25 8.936864 ACTTCTAGAATTACAGTGCATTTACAC 58.063 33.333 5.44 0.00 41.02 2.90
25 26 9.502091 AACTTCTAGAATTACAGTGCATTTACA 57.498 29.630 5.44 0.00 0.00 2.41
26 27 9.974750 GAACTTCTAGAATTACAGTGCATTTAC 57.025 33.333 5.44 0.00 0.00 2.01
27 28 9.162764 GGAACTTCTAGAATTACAGTGCATTTA 57.837 33.333 5.44 0.00 0.00 1.40
28 29 7.665559 TGGAACTTCTAGAATTACAGTGCATTT 59.334 33.333 5.44 0.00 0.00 2.32
29 30 7.168219 TGGAACTTCTAGAATTACAGTGCATT 58.832 34.615 5.44 0.00 0.00 3.56
30 31 6.711277 TGGAACTTCTAGAATTACAGTGCAT 58.289 36.000 5.44 0.00 0.00 3.96
31 32 6.109156 TGGAACTTCTAGAATTACAGTGCA 57.891 37.500 5.44 0.00 0.00 4.57
32 33 6.091441 CACTGGAACTTCTAGAATTACAGTGC 59.909 42.308 32.42 18.73 44.22 4.40
33 34 7.588143 CACTGGAACTTCTAGAATTACAGTG 57.412 40.000 31.73 31.73 44.59 3.66
34 35 6.014156 AGCACTGGAACTTCTAGAATTACAGT 60.014 38.462 24.85 24.85 37.15 3.55
35 36 6.402222 AGCACTGGAACTTCTAGAATTACAG 58.598 40.000 24.02 24.02 0.00 2.74
36 37 6.360370 AGCACTGGAACTTCTAGAATTACA 57.640 37.500 5.44 8.63 0.00 2.41
37 38 8.950208 ATTAGCACTGGAACTTCTAGAATTAC 57.050 34.615 5.44 4.53 0.00 1.89
38 39 9.959721 AAATTAGCACTGGAACTTCTAGAATTA 57.040 29.630 5.44 0.00 0.00 1.40
39 40 8.734386 CAAATTAGCACTGGAACTTCTAGAATT 58.266 33.333 5.44 0.00 0.00 2.17
40 41 8.103305 TCAAATTAGCACTGGAACTTCTAGAAT 58.897 33.333 5.44 0.00 0.00 2.40
41 42 7.387948 GTCAAATTAGCACTGGAACTTCTAGAA 59.612 37.037 9.02 4.81 0.00 2.10
42 43 6.874134 GTCAAATTAGCACTGGAACTTCTAGA 59.126 38.462 9.02 0.00 0.00 2.43
43 44 6.876257 AGTCAAATTAGCACTGGAACTTCTAG 59.124 38.462 0.73 0.73 0.00 2.43
44 45 6.769512 AGTCAAATTAGCACTGGAACTTCTA 58.230 36.000 0.00 0.00 0.00 2.10
45 46 5.625150 AGTCAAATTAGCACTGGAACTTCT 58.375 37.500 0.00 0.00 0.00 2.85
46 47 5.948992 AGTCAAATTAGCACTGGAACTTC 57.051 39.130 0.00 0.00 0.00 3.01
47 48 5.507985 GCAAGTCAAATTAGCACTGGAACTT 60.508 40.000 0.00 0.00 0.00 2.66
48 49 4.022849 GCAAGTCAAATTAGCACTGGAACT 60.023 41.667 0.00 0.00 0.00 3.01
49 50 4.229876 GCAAGTCAAATTAGCACTGGAAC 58.770 43.478 0.00 0.00 0.00 3.62
50 51 3.888323 TGCAAGTCAAATTAGCACTGGAA 59.112 39.130 0.00 0.00 0.00 3.53
51 52 3.485394 TGCAAGTCAAATTAGCACTGGA 58.515 40.909 0.00 0.00 0.00 3.86
52 53 3.921119 TGCAAGTCAAATTAGCACTGG 57.079 42.857 0.00 0.00 0.00 4.00
84 85 8.298140 GCAGTCTACTTAGAGTTGAAGTCTTAA 58.702 37.037 7.97 0.79 38.16 1.85
85 86 7.447545 TGCAGTCTACTTAGAGTTGAAGTCTTA 59.552 37.037 7.97 0.00 38.16 2.10
86 87 6.265649 TGCAGTCTACTTAGAGTTGAAGTCTT 59.734 38.462 7.97 0.00 38.16 3.01
87 88 5.770663 TGCAGTCTACTTAGAGTTGAAGTCT 59.229 40.000 7.77 7.77 38.16 3.24
88 89 6.015027 TGCAGTCTACTTAGAGTTGAAGTC 57.985 41.667 0.00 0.00 38.16 3.01
89 90 6.041069 ACTTGCAGTCTACTTAGAGTTGAAGT 59.959 38.462 7.89 7.89 40.27 3.01
90 91 6.451393 ACTTGCAGTCTACTTAGAGTTGAAG 58.549 40.000 0.00 7.04 32.19 3.02
91 92 6.406692 ACTTGCAGTCTACTTAGAGTTGAA 57.593 37.500 0.00 0.00 32.19 2.69
92 93 6.406692 AACTTGCAGTCTACTTAGAGTTGA 57.593 37.500 0.00 0.00 33.86 3.18
93 94 6.586844 GGTAACTTGCAGTCTACTTAGAGTTG 59.413 42.308 3.90 0.00 33.86 3.16
94 95 6.267014 TGGTAACTTGCAGTCTACTTAGAGTT 59.733 38.462 0.00 0.00 33.39 3.01
95 96 5.773680 TGGTAACTTGCAGTCTACTTAGAGT 59.226 40.000 0.00 0.00 35.11 3.24
96 97 6.268825 TGGTAACTTGCAGTCTACTTAGAG 57.731 41.667 0.00 0.00 32.19 2.43
97 98 5.336531 GCTGGTAACTTGCAGTCTACTTAGA 60.337 44.000 0.00 0.00 36.88 2.10
98 99 4.865365 GCTGGTAACTTGCAGTCTACTTAG 59.135 45.833 0.00 0.00 36.88 2.18
99 100 4.282449 TGCTGGTAACTTGCAGTCTACTTA 59.718 41.667 0.00 0.00 40.62 2.24
100 101 3.071023 TGCTGGTAACTTGCAGTCTACTT 59.929 43.478 0.00 0.00 40.62 2.24
101 102 2.632996 TGCTGGTAACTTGCAGTCTACT 59.367 45.455 0.00 0.00 40.62 2.57
102 103 3.040147 TGCTGGTAACTTGCAGTCTAC 57.960 47.619 0.00 0.00 40.62 2.59
108 109 2.862541 ACAATCTGCTGGTAACTTGCA 58.137 42.857 0.00 0.00 42.53 4.08
109 110 5.335127 CATTACAATCTGCTGGTAACTTGC 58.665 41.667 0.00 0.00 37.29 4.01
110 111 5.677091 GCCATTACAATCTGCTGGTAACTTG 60.677 44.000 0.00 0.00 37.61 3.16
111 112 4.399303 GCCATTACAATCTGCTGGTAACTT 59.601 41.667 0.00 0.00 37.61 2.66
112 113 3.947834 GCCATTACAATCTGCTGGTAACT 59.052 43.478 0.00 0.00 37.61 2.24
113 114 3.242739 CGCCATTACAATCTGCTGGTAAC 60.243 47.826 0.00 0.00 30.57 2.50
114 115 2.942376 CGCCATTACAATCTGCTGGTAA 59.058 45.455 0.00 0.00 0.00 2.85
115 116 2.560504 CGCCATTACAATCTGCTGGTA 58.439 47.619 0.00 0.00 0.00 3.25
116 117 1.382522 CGCCATTACAATCTGCTGGT 58.617 50.000 0.00 0.00 0.00 4.00
117 118 0.664761 CCGCCATTACAATCTGCTGG 59.335 55.000 0.00 0.00 0.00 4.85
118 119 1.331756 GACCGCCATTACAATCTGCTG 59.668 52.381 0.00 0.00 0.00 4.41
119 120 1.210478 AGACCGCCATTACAATCTGCT 59.790 47.619 0.00 0.00 0.00 4.24
120 121 1.668419 AGACCGCCATTACAATCTGC 58.332 50.000 0.00 0.00 0.00 4.26
121 122 7.387673 TGATAATTAGACCGCCATTACAATCTG 59.612 37.037 0.00 0.00 0.00 2.90
122 123 7.387948 GTGATAATTAGACCGCCATTACAATCT 59.612 37.037 0.00 0.00 0.00 2.40
123 124 7.387948 AGTGATAATTAGACCGCCATTACAATC 59.612 37.037 0.00 0.00 0.00 2.67
124 125 7.173218 CAGTGATAATTAGACCGCCATTACAAT 59.827 37.037 0.00 0.00 0.00 2.71
125 126 6.481976 CAGTGATAATTAGACCGCCATTACAA 59.518 38.462 0.00 0.00 0.00 2.41
126 127 5.989168 CAGTGATAATTAGACCGCCATTACA 59.011 40.000 0.00 0.00 0.00 2.41
127 128 5.107065 GCAGTGATAATTAGACCGCCATTAC 60.107 44.000 0.00 0.00 0.00 1.89
128 129 4.994852 GCAGTGATAATTAGACCGCCATTA 59.005 41.667 0.00 0.00 0.00 1.90
129 130 3.815401 GCAGTGATAATTAGACCGCCATT 59.185 43.478 0.00 0.00 0.00 3.16
130 131 3.181455 TGCAGTGATAATTAGACCGCCAT 60.181 43.478 0.00 0.00 0.00 4.40
131 132 2.169561 TGCAGTGATAATTAGACCGCCA 59.830 45.455 0.00 0.00 0.00 5.69
132 133 2.833794 TGCAGTGATAATTAGACCGCC 58.166 47.619 0.00 0.00 0.00 6.13
133 134 5.424121 AATTGCAGTGATAATTAGACCGC 57.576 39.130 0.00 0.00 0.00 5.68
134 135 7.697691 AGAAAATTGCAGTGATAATTAGACCG 58.302 34.615 0.00 0.00 0.00 4.79
135 136 8.131731 GGAGAAAATTGCAGTGATAATTAGACC 58.868 37.037 0.00 0.17 0.00 3.85
136 137 8.131731 GGGAGAAAATTGCAGTGATAATTAGAC 58.868 37.037 0.00 0.00 0.00 2.59
137 138 7.833682 TGGGAGAAAATTGCAGTGATAATTAGA 59.166 33.333 0.00 0.00 0.00 2.10
138 139 7.999679 TGGGAGAAAATTGCAGTGATAATTAG 58.000 34.615 0.00 0.00 0.00 1.73
139 140 7.953005 TGGGAGAAAATTGCAGTGATAATTA 57.047 32.000 0.00 0.00 0.00 1.40
140 141 6.855763 TGGGAGAAAATTGCAGTGATAATT 57.144 33.333 0.00 0.00 0.00 1.40
141 142 6.855763 TTGGGAGAAAATTGCAGTGATAAT 57.144 33.333 0.00 0.00 0.00 1.28
142 143 6.662865 TTTGGGAGAAAATTGCAGTGATAA 57.337 33.333 0.00 0.00 0.00 1.75
143 144 6.436847 TCATTTGGGAGAAAATTGCAGTGATA 59.563 34.615 0.00 0.00 0.00 2.15
144 145 5.246656 TCATTTGGGAGAAAATTGCAGTGAT 59.753 36.000 0.00 0.00 0.00 3.06
145 146 4.588106 TCATTTGGGAGAAAATTGCAGTGA 59.412 37.500 0.00 0.00 0.00 3.41
146 147 4.687483 GTCATTTGGGAGAAAATTGCAGTG 59.313 41.667 0.00 0.00 0.00 3.66
147 148 4.590222 AGTCATTTGGGAGAAAATTGCAGT 59.410 37.500 0.00 0.00 0.00 4.40
148 149 4.927425 CAGTCATTTGGGAGAAAATTGCAG 59.073 41.667 0.00 0.00 0.00 4.41
149 150 4.344679 ACAGTCATTTGGGAGAAAATTGCA 59.655 37.500 0.00 0.00 0.00 4.08
150 151 4.886579 ACAGTCATTTGGGAGAAAATTGC 58.113 39.130 0.00 0.00 0.00 3.56
151 152 7.596248 CACTTACAGTCATTTGGGAGAAAATTG 59.404 37.037 0.00 0.00 0.00 2.32
152 153 7.255942 CCACTTACAGTCATTTGGGAGAAAATT 60.256 37.037 0.00 0.00 0.00 1.82
153 154 6.209391 CCACTTACAGTCATTTGGGAGAAAAT 59.791 38.462 0.00 0.00 0.00 1.82
154 155 5.534654 CCACTTACAGTCATTTGGGAGAAAA 59.465 40.000 0.00 0.00 0.00 2.29
155 156 5.070001 CCACTTACAGTCATTTGGGAGAAA 58.930 41.667 0.00 0.00 0.00 2.52
156 157 4.349636 TCCACTTACAGTCATTTGGGAGAA 59.650 41.667 0.00 0.00 0.00 2.87
157 158 3.907474 TCCACTTACAGTCATTTGGGAGA 59.093 43.478 0.00 0.00 0.00 3.71
158 159 4.003648 GTCCACTTACAGTCATTTGGGAG 58.996 47.826 0.00 0.00 0.00 4.30
159 160 3.650942 AGTCCACTTACAGTCATTTGGGA 59.349 43.478 0.00 0.00 0.00 4.37
160 161 3.753272 CAGTCCACTTACAGTCATTTGGG 59.247 47.826 0.00 0.00 0.00 4.12
161 162 4.389374 ACAGTCCACTTACAGTCATTTGG 58.611 43.478 0.00 0.00 0.00 3.28
162 163 6.650807 ACATACAGTCCACTTACAGTCATTTG 59.349 38.462 0.00 0.00 0.00 2.32
163 164 6.769512 ACATACAGTCCACTTACAGTCATTT 58.230 36.000 0.00 0.00 0.00 2.32
164 165 6.360370 ACATACAGTCCACTTACAGTCATT 57.640 37.500 0.00 0.00 0.00 2.57
165 166 6.014584 TCAACATACAGTCCACTTACAGTCAT 60.015 38.462 0.00 0.00 0.00 3.06
166 167 5.303333 TCAACATACAGTCCACTTACAGTCA 59.697 40.000 0.00 0.00 0.00 3.41
167 168 5.634020 GTCAACATACAGTCCACTTACAGTC 59.366 44.000 0.00 0.00 0.00 3.51
168 169 5.539048 GTCAACATACAGTCCACTTACAGT 58.461 41.667 0.00 0.00 0.00 3.55
169 170 4.621460 CGTCAACATACAGTCCACTTACAG 59.379 45.833 0.00 0.00 0.00 2.74
170 171 4.552355 CGTCAACATACAGTCCACTTACA 58.448 43.478 0.00 0.00 0.00 2.41
171 172 3.367025 GCGTCAACATACAGTCCACTTAC 59.633 47.826 0.00 0.00 0.00 2.34
172 173 3.581755 GCGTCAACATACAGTCCACTTA 58.418 45.455 0.00 0.00 0.00 2.24
173 174 2.413837 GCGTCAACATACAGTCCACTT 58.586 47.619 0.00 0.00 0.00 3.16
174 175 1.337823 GGCGTCAACATACAGTCCACT 60.338 52.381 0.00 0.00 0.00 4.00
175 176 1.076332 GGCGTCAACATACAGTCCAC 58.924 55.000 0.00 0.00 0.00 4.02
176 177 0.682292 TGGCGTCAACATACAGTCCA 59.318 50.000 0.00 0.00 0.00 4.02
177 178 1.076332 GTGGCGTCAACATACAGTCC 58.924 55.000 0.00 0.00 0.00 3.85
178 179 1.726791 CAGTGGCGTCAACATACAGTC 59.273 52.381 0.00 0.00 0.00 3.51
179 180 1.343142 TCAGTGGCGTCAACATACAGT 59.657 47.619 0.00 0.00 0.00 3.55
180 181 2.078849 TCAGTGGCGTCAACATACAG 57.921 50.000 0.00 0.00 0.00 2.74
181 182 2.345876 CATCAGTGGCGTCAACATACA 58.654 47.619 0.00 0.00 0.00 2.29
182 183 1.062587 GCATCAGTGGCGTCAACATAC 59.937 52.381 0.00 0.00 0.00 2.39
183 184 1.368641 GCATCAGTGGCGTCAACATA 58.631 50.000 0.00 0.00 0.00 2.29
184 185 1.308069 GGCATCAGTGGCGTCAACAT 61.308 55.000 0.00 0.00 41.35 2.71
185 186 1.965930 GGCATCAGTGGCGTCAACA 60.966 57.895 0.00 0.00 41.35 3.33
186 187 2.870372 GGCATCAGTGGCGTCAAC 59.130 61.111 0.00 0.00 41.35 3.18
193 194 0.904649 TGTAGGTCTGGCATCAGTGG 59.095 55.000 0.00 0.00 41.59 4.00
194 195 2.744202 GTTTGTAGGTCTGGCATCAGTG 59.256 50.000 0.00 0.00 41.59 3.66
195 196 2.371841 TGTTTGTAGGTCTGGCATCAGT 59.628 45.455 0.00 0.00 41.59 3.41
196 197 3.057969 TGTTTGTAGGTCTGGCATCAG 57.942 47.619 0.00 0.00 42.21 2.90
197 198 3.500448 TTGTTTGTAGGTCTGGCATCA 57.500 42.857 0.00 0.00 0.00 3.07
198 199 4.576463 CCTATTGTTTGTAGGTCTGGCATC 59.424 45.833 0.00 0.00 35.12 3.91
199 200 4.018415 ACCTATTGTTTGTAGGTCTGGCAT 60.018 41.667 0.00 0.00 46.98 4.40
200 201 3.329520 ACCTATTGTTTGTAGGTCTGGCA 59.670 43.478 0.00 0.00 46.98 4.92
201 202 3.951663 ACCTATTGTTTGTAGGTCTGGC 58.048 45.455 0.00 0.00 46.98 4.85
207 208 7.012704 CAGATCCATCAACCTATTGTTTGTAGG 59.987 40.741 0.00 0.00 43.54 3.18
208 209 7.554118 ACAGATCCATCAACCTATTGTTTGTAG 59.446 37.037 0.00 0.00 37.11 2.74
209 210 7.402054 ACAGATCCATCAACCTATTGTTTGTA 58.598 34.615 0.00 0.00 37.11 2.41
210 211 6.248433 ACAGATCCATCAACCTATTGTTTGT 58.752 36.000 0.00 0.00 37.11 2.83
211 212 6.764308 ACAGATCCATCAACCTATTGTTTG 57.236 37.500 0.00 0.00 37.11 2.93
212 213 7.056635 CCTACAGATCCATCAACCTATTGTTT 58.943 38.462 0.00 0.00 37.11 2.83
213 214 6.409695 CCCTACAGATCCATCAACCTATTGTT 60.410 42.308 0.00 0.00 37.11 2.83
214 215 5.072329 CCCTACAGATCCATCAACCTATTGT 59.928 44.000 0.00 0.00 37.11 2.71
215 216 5.555017 CCCTACAGATCCATCAACCTATTG 58.445 45.833 0.00 0.00 37.14 1.90
216 217 4.042187 GCCCTACAGATCCATCAACCTATT 59.958 45.833 0.00 0.00 0.00 1.73
217 218 3.584848 GCCCTACAGATCCATCAACCTAT 59.415 47.826 0.00 0.00 0.00 2.57
218 219 2.972713 GCCCTACAGATCCATCAACCTA 59.027 50.000 0.00 0.00 0.00 3.08
219 220 1.771255 GCCCTACAGATCCATCAACCT 59.229 52.381 0.00 0.00 0.00 3.50
220 221 1.771255 AGCCCTACAGATCCATCAACC 59.229 52.381 0.00 0.00 0.00 3.77
221 222 3.567478 AAGCCCTACAGATCCATCAAC 57.433 47.619 0.00 0.00 0.00 3.18
222 223 4.591321 AAAAGCCCTACAGATCCATCAA 57.409 40.909 0.00 0.00 0.00 2.57
223 224 4.591321 AAAAAGCCCTACAGATCCATCA 57.409 40.909 0.00 0.00 0.00 3.07
241 242 7.065204 GGTTTCAAACAAATGTGAGCCTAAAAA 59.935 33.333 1.93 0.00 0.00 1.94
242 243 6.536941 GGTTTCAAACAAATGTGAGCCTAAAA 59.463 34.615 1.93 0.00 0.00 1.52
243 244 6.045955 GGTTTCAAACAAATGTGAGCCTAAA 58.954 36.000 1.93 0.00 0.00 1.85
244 245 5.596845 GGTTTCAAACAAATGTGAGCCTAA 58.403 37.500 1.93 0.00 0.00 2.69
245 246 4.261405 CGGTTTCAAACAAATGTGAGCCTA 60.261 41.667 1.93 0.00 0.00 3.93
246 247 3.490761 CGGTTTCAAACAAATGTGAGCCT 60.491 43.478 1.93 0.00 0.00 4.58
247 248 2.794350 CGGTTTCAAACAAATGTGAGCC 59.206 45.455 1.93 0.00 0.00 4.70
248 249 2.794350 CCGGTTTCAAACAAATGTGAGC 59.206 45.455 1.93 0.00 0.00 4.26
249 250 3.181480 ACCCGGTTTCAAACAAATGTGAG 60.181 43.478 1.93 0.00 0.00 3.51
250 251 2.761208 ACCCGGTTTCAAACAAATGTGA 59.239 40.909 1.93 0.00 0.00 3.58
251 252 3.120041 GACCCGGTTTCAAACAAATGTG 58.880 45.455 1.93 0.00 0.00 3.21
252 253 2.101750 GGACCCGGTTTCAAACAAATGT 59.898 45.455 1.93 0.00 0.00 2.71
253 254 2.101582 TGGACCCGGTTTCAAACAAATG 59.898 45.455 1.93 0.00 0.00 2.32
254 255 2.364002 CTGGACCCGGTTTCAAACAAAT 59.636 45.455 1.93 0.00 0.00 2.32
255 256 1.751924 CTGGACCCGGTTTCAAACAAA 59.248 47.619 1.93 0.00 0.00 2.83
256 257 1.341187 ACTGGACCCGGTTTCAAACAA 60.341 47.619 1.93 0.00 30.14 2.83
257 258 0.256464 ACTGGACCCGGTTTCAAACA 59.744 50.000 1.93 0.00 30.14 2.83
258 259 1.335810 GAACTGGACCCGGTTTCAAAC 59.664 52.381 13.93 0.00 44.62 2.93
259 260 1.682740 GAACTGGACCCGGTTTCAAA 58.317 50.000 13.93 0.00 44.62 2.69
260 261 0.179012 GGAACTGGACCCGGTTTCAA 60.179 55.000 13.93 0.00 44.62 2.69
261 262 1.346479 TGGAACTGGACCCGGTTTCA 61.346 55.000 15.92 15.92 45.58 2.69
262 263 0.179012 TTGGAACTGGACCCGGTTTC 60.179 55.000 13.93 12.60 44.62 2.78
263 264 0.466739 GTTGGAACTGGACCCGGTTT 60.467 55.000 13.93 0.00 44.62 3.27
264 265 1.149854 GTTGGAACTGGACCCGGTT 59.850 57.895 12.74 12.74 46.94 4.44
265 266 2.826003 GGTTGGAACTGGACCCGGT 61.826 63.158 0.00 0.00 37.08 5.28
266 267 2.033602 GGTTGGAACTGGACCCGG 59.966 66.667 0.00 0.00 0.00 5.73
267 268 2.033602 GGGTTGGAACTGGACCCG 59.966 66.667 0.00 0.00 43.25 5.28
269 270 2.033602 CCGGGTTGGAACTGGACC 59.966 66.667 0.00 0.00 42.00 4.46
270 271 0.397564 TAACCGGGTTGGAACTGGAC 59.602 55.000 22.44 0.00 42.00 4.02
271 272 0.688487 CTAACCGGGTTGGAACTGGA 59.312 55.000 22.44 0.00 42.00 3.86
272 273 0.322187 CCTAACCGGGTTGGAACTGG 60.322 60.000 23.17 10.97 42.00 4.00
273 274 0.688487 TCCTAACCGGGTTGGAACTG 59.312 55.000 21.09 7.74 42.00 3.16
274 275 1.665137 ATCCTAACCGGGTTGGAACT 58.335 50.000 26.70 8.62 42.00 3.01
275 276 2.502142 AATCCTAACCGGGTTGGAAC 57.498 50.000 26.70 0.00 42.00 3.62
280 281 1.212250 AGGCCAATCCTAACCGGGTT 61.212 55.000 17.83 17.83 45.41 4.11
281 282 1.212250 AAGGCCAATCCTAACCGGGT 61.212 55.000 6.32 0.00 46.94 5.28
282 283 0.033503 AAAGGCCAATCCTAACCGGG 60.034 55.000 6.32 0.00 46.94 5.73
283 284 1.847328 AAAAGGCCAATCCTAACCGG 58.153 50.000 5.01 0.00 46.94 5.28
284 285 2.357952 GCTAAAAGGCCAATCCTAACCG 59.642 50.000 5.01 0.00 46.94 4.44
285 286 3.361786 TGCTAAAAGGCCAATCCTAACC 58.638 45.455 5.01 0.00 46.94 2.85
286 287 5.127031 TCAATGCTAAAAGGCCAATCCTAAC 59.873 40.000 5.01 0.00 46.94 2.34
287 288 5.127031 GTCAATGCTAAAAGGCCAATCCTAA 59.873 40.000 5.01 0.00 46.94 2.69
288 289 4.644685 GTCAATGCTAAAAGGCCAATCCTA 59.355 41.667 5.01 0.00 46.94 2.94
290 291 3.195396 TGTCAATGCTAAAAGGCCAATCC 59.805 43.478 5.01 0.00 0.00 3.01
291 292 4.454728 TGTCAATGCTAAAAGGCCAATC 57.545 40.909 5.01 0.00 0.00 2.67
292 293 4.761975 CATGTCAATGCTAAAAGGCCAAT 58.238 39.130 5.01 0.00 0.00 3.16
293 294 4.191033 CATGTCAATGCTAAAAGGCCAA 57.809 40.909 5.01 0.00 0.00 4.52
294 295 3.872511 CATGTCAATGCTAAAAGGCCA 57.127 42.857 5.01 0.00 0.00 5.36
305 306 1.941975 TCCGCTATGTGCATGTCAATG 59.058 47.619 0.00 0.00 43.06 2.82
306 307 2.158914 TCTCCGCTATGTGCATGTCAAT 60.159 45.455 0.00 0.00 43.06 2.57
307 308 1.206849 TCTCCGCTATGTGCATGTCAA 59.793 47.619 0.00 0.00 43.06 3.18
308 309 0.823460 TCTCCGCTATGTGCATGTCA 59.177 50.000 0.00 0.00 43.06 3.58
309 310 2.160822 ATCTCCGCTATGTGCATGTC 57.839 50.000 0.00 0.00 43.06 3.06
310 311 2.365293 TGTATCTCCGCTATGTGCATGT 59.635 45.455 0.00 0.00 43.06 3.21
311 312 2.733552 GTGTATCTCCGCTATGTGCATG 59.266 50.000 0.00 0.00 43.06 4.06
312 313 2.365293 TGTGTATCTCCGCTATGTGCAT 59.635 45.455 0.00 0.00 43.06 3.96
313 314 1.754226 TGTGTATCTCCGCTATGTGCA 59.246 47.619 0.00 0.00 43.06 4.57
314 315 2.509052 TGTGTATCTCCGCTATGTGC 57.491 50.000 0.00 0.00 38.57 4.57
315 316 5.220662 CCTTTTTGTGTATCTCCGCTATGTG 60.221 44.000 0.00 0.00 0.00 3.21
316 317 4.876107 CCTTTTTGTGTATCTCCGCTATGT 59.124 41.667 0.00 0.00 0.00 2.29
317 318 5.116180 TCCTTTTTGTGTATCTCCGCTATG 58.884 41.667 0.00 0.00 0.00 2.23
318 319 5.128827 TCTCCTTTTTGTGTATCTCCGCTAT 59.871 40.000 0.00 0.00 0.00 2.97
319 320 4.464951 TCTCCTTTTTGTGTATCTCCGCTA 59.535 41.667 0.00 0.00 0.00 4.26
320 321 3.260884 TCTCCTTTTTGTGTATCTCCGCT 59.739 43.478 0.00 0.00 0.00 5.52
321 322 3.371285 GTCTCCTTTTTGTGTATCTCCGC 59.629 47.826 0.00 0.00 0.00 5.54
322 323 3.612860 CGTCTCCTTTTTGTGTATCTCCG 59.387 47.826 0.00 0.00 0.00 4.63
323 324 3.371285 GCGTCTCCTTTTTGTGTATCTCC 59.629 47.826 0.00 0.00 0.00 3.71
324 325 3.994392 TGCGTCTCCTTTTTGTGTATCTC 59.006 43.478 0.00 0.00 0.00 2.75
325 326 3.746492 GTGCGTCTCCTTTTTGTGTATCT 59.254 43.478 0.00 0.00 0.00 1.98
326 327 3.496884 TGTGCGTCTCCTTTTTGTGTATC 59.503 43.478 0.00 0.00 0.00 2.24
327 328 3.472652 TGTGCGTCTCCTTTTTGTGTAT 58.527 40.909 0.00 0.00 0.00 2.29
328 329 2.907634 TGTGCGTCTCCTTTTTGTGTA 58.092 42.857 0.00 0.00 0.00 2.90
329 330 1.745232 TGTGCGTCTCCTTTTTGTGT 58.255 45.000 0.00 0.00 0.00 3.72
330 331 2.842208 TTGTGCGTCTCCTTTTTGTG 57.158 45.000 0.00 0.00 0.00 3.33
331 332 4.553938 CGTATTTGTGCGTCTCCTTTTTGT 60.554 41.667 0.00 0.00 0.00 2.83
332 333 3.906008 CGTATTTGTGCGTCTCCTTTTTG 59.094 43.478 0.00 0.00 0.00 2.44
333 334 3.562557 ACGTATTTGTGCGTCTCCTTTTT 59.437 39.130 0.00 0.00 36.54 1.94
334 335 3.135994 ACGTATTTGTGCGTCTCCTTTT 58.864 40.909 0.00 0.00 36.54 2.27
335 336 2.762745 ACGTATTTGTGCGTCTCCTTT 58.237 42.857 0.00 0.00 36.54 3.11
336 337 2.450609 ACGTATTTGTGCGTCTCCTT 57.549 45.000 0.00 0.00 36.54 3.36
337 338 2.229543 TGTACGTATTTGTGCGTCTCCT 59.770 45.455 0.00 0.00 41.77 3.69
338 339 2.598589 TGTACGTATTTGTGCGTCTCC 58.401 47.619 0.00 0.00 41.77 3.71
339 340 3.671928 ACTTGTACGTATTTGTGCGTCTC 59.328 43.478 0.00 0.00 41.77 3.36
340 341 3.427528 CACTTGTACGTATTTGTGCGTCT 59.572 43.478 0.00 0.00 41.77 4.18
341 342 3.182972 ACACTTGTACGTATTTGTGCGTC 59.817 43.478 18.18 0.00 41.77 5.19
342 343 3.125316 ACACTTGTACGTATTTGTGCGT 58.875 40.909 18.18 0.00 44.02 5.24
343 344 3.716891 CGACACTTGTACGTATTTGTGCG 60.717 47.826 18.18 17.54 0.00 5.34
344 345 3.182972 ACGACACTTGTACGTATTTGTGC 59.817 43.478 18.18 12.67 38.47 4.57
345 346 4.143473 GGACGACACTTGTACGTATTTGTG 60.143 45.833 17.25 17.25 40.29 3.33
346 347 3.983344 GGACGACACTTGTACGTATTTGT 59.017 43.478 0.00 0.00 40.29 2.83
347 348 4.232221 AGGACGACACTTGTACGTATTTG 58.768 43.478 0.00 0.00 40.29 2.32
348 349 4.510038 AGGACGACACTTGTACGTATTT 57.490 40.909 0.00 0.00 40.29 1.40
349 350 5.824904 ATAGGACGACACTTGTACGTATT 57.175 39.130 0.00 0.00 40.29 1.89
350 351 5.824904 AATAGGACGACACTTGTACGTAT 57.175 39.130 0.00 0.00 40.29 3.06
351 352 6.925610 ATAATAGGACGACACTTGTACGTA 57.074 37.500 0.00 0.00 40.29 3.57
352 353 5.824904 ATAATAGGACGACACTTGTACGT 57.175 39.130 0.00 0.00 42.84 3.57
353 354 5.457799 CCAATAATAGGACGACACTTGTACG 59.542 44.000 0.00 0.00 0.00 3.67
354 355 6.335777 ACCAATAATAGGACGACACTTGTAC 58.664 40.000 0.00 0.00 0.00 2.90
355 356 6.534475 ACCAATAATAGGACGACACTTGTA 57.466 37.500 0.00 0.00 0.00 2.41
356 357 5.416271 ACCAATAATAGGACGACACTTGT 57.584 39.130 0.00 0.00 0.00 3.16
357 358 5.064707 CCAACCAATAATAGGACGACACTTG 59.935 44.000 0.00 0.00 0.00 3.16
358 359 5.046159 TCCAACCAATAATAGGACGACACTT 60.046 40.000 0.00 0.00 0.00 3.16
359 360 4.468510 TCCAACCAATAATAGGACGACACT 59.531 41.667 0.00 0.00 0.00 3.55
360 361 4.761975 TCCAACCAATAATAGGACGACAC 58.238 43.478 0.00 0.00 0.00 3.67
361 362 5.423704 TTCCAACCAATAATAGGACGACA 57.576 39.130 0.00 0.00 0.00 4.35
362 363 6.373495 AGTTTTCCAACCAATAATAGGACGAC 59.627 38.462 0.00 0.00 32.70 4.34
363 364 6.478129 AGTTTTCCAACCAATAATAGGACGA 58.522 36.000 0.00 0.00 32.70 4.20
364 365 6.753107 AGTTTTCCAACCAATAATAGGACG 57.247 37.500 0.00 0.00 32.70 4.79
365 366 8.027189 GTCAAGTTTTCCAACCAATAATAGGAC 58.973 37.037 0.00 0.00 32.70 3.85
366 367 7.947890 AGTCAAGTTTTCCAACCAATAATAGGA 59.052 33.333 0.00 0.00 32.70 2.94
367 368 8.028938 CAGTCAAGTTTTCCAACCAATAATAGG 58.971 37.037 0.00 0.00 32.70 2.57
368 369 8.792633 TCAGTCAAGTTTTCCAACCAATAATAG 58.207 33.333 0.00 0.00 32.70 1.73
369 370 8.698973 TCAGTCAAGTTTTCCAACCAATAATA 57.301 30.769 0.00 0.00 32.70 0.98
370 371 7.595819 TCAGTCAAGTTTTCCAACCAATAAT 57.404 32.000 0.00 0.00 32.70 1.28
371 372 7.432869 CATCAGTCAAGTTTTCCAACCAATAA 58.567 34.615 0.00 0.00 32.70 1.40
372 373 6.516527 GCATCAGTCAAGTTTTCCAACCAATA 60.517 38.462 0.00 0.00 32.70 1.90
373 374 5.739935 GCATCAGTCAAGTTTTCCAACCAAT 60.740 40.000 0.00 0.00 32.70 3.16
374 375 4.441356 GCATCAGTCAAGTTTTCCAACCAA 60.441 41.667 0.00 0.00 32.70 3.67
375 376 3.068024 GCATCAGTCAAGTTTTCCAACCA 59.932 43.478 0.00 0.00 32.70 3.67
376 377 3.552890 GGCATCAGTCAAGTTTTCCAACC 60.553 47.826 0.00 0.00 32.70 3.77
377 378 3.552890 GGGCATCAGTCAAGTTTTCCAAC 60.553 47.826 0.00 0.00 0.00 3.77
378 379 2.627699 GGGCATCAGTCAAGTTTTCCAA 59.372 45.455 0.00 0.00 0.00 3.53
379 380 2.238521 GGGCATCAGTCAAGTTTTCCA 58.761 47.619 0.00 0.00 0.00 3.53
380 381 2.238521 TGGGCATCAGTCAAGTTTTCC 58.761 47.619 0.00 0.00 0.00 3.13
381 382 4.320608 TTTGGGCATCAGTCAAGTTTTC 57.679 40.909 0.00 0.00 0.00 2.29
382 383 4.344679 TCATTTGGGCATCAGTCAAGTTTT 59.655 37.500 0.00 0.00 0.00 2.43
383 384 3.896888 TCATTTGGGCATCAGTCAAGTTT 59.103 39.130 0.00 0.00 0.00 2.66
384 385 3.499338 TCATTTGGGCATCAGTCAAGTT 58.501 40.909 0.00 0.00 0.00 2.66
385 386 3.159213 TCATTTGGGCATCAGTCAAGT 57.841 42.857 0.00 0.00 0.00 3.16
386 387 4.730949 AATCATTTGGGCATCAGTCAAG 57.269 40.909 0.00 0.00 0.00 3.02
387 388 5.011840 TGAAAATCATTTGGGCATCAGTCAA 59.988 36.000 0.00 0.00 0.00 3.18
388 389 4.527427 TGAAAATCATTTGGGCATCAGTCA 59.473 37.500 0.00 0.00 0.00 3.41
389 390 5.075858 TGAAAATCATTTGGGCATCAGTC 57.924 39.130 0.00 0.00 0.00 3.51
390 391 4.529377 ACTGAAAATCATTTGGGCATCAGT 59.471 37.500 8.13 8.13 0.00 3.41
391 392 5.080969 ACTGAAAATCATTTGGGCATCAG 57.919 39.130 7.07 7.07 0.00 2.90
392 393 4.527427 TGACTGAAAATCATTTGGGCATCA 59.473 37.500 0.00 0.00 0.00 3.07
393 394 5.075858 TGACTGAAAATCATTTGGGCATC 57.924 39.130 0.00 0.00 0.00 3.91
394 395 5.486735 TTGACTGAAAATCATTTGGGCAT 57.513 34.783 0.00 0.00 0.00 4.40
395 396 4.952071 TTGACTGAAAATCATTTGGGCA 57.048 36.364 0.00 0.00 0.00 5.36
396 397 4.150451 CGTTTGACTGAAAATCATTTGGGC 59.850 41.667 0.00 0.00 0.00 5.36
397 398 5.288804 ACGTTTGACTGAAAATCATTTGGG 58.711 37.500 0.00 0.00 0.00 4.12
398 399 5.976534 TGACGTTTGACTGAAAATCATTTGG 59.023 36.000 0.00 0.00 0.00 3.28
399 400 7.448588 TTGACGTTTGACTGAAAATCATTTG 57.551 32.000 0.00 0.00 0.00 2.32
400 401 8.647143 ATTTGACGTTTGACTGAAAATCATTT 57.353 26.923 0.00 0.00 0.00 2.32
401 402 9.398170 CTATTTGACGTTTGACTGAAAATCATT 57.602 29.630 0.00 0.00 0.00 2.57
402 403 8.783093 TCTATTTGACGTTTGACTGAAAATCAT 58.217 29.630 0.00 0.00 0.00 2.45
403 404 8.067784 GTCTATTTGACGTTTGACTGAAAATCA 58.932 33.333 0.00 0.00 35.81 2.57
404 405 8.423353 GTCTATTTGACGTTTGACTGAAAATC 57.577 34.615 0.00 0.00 35.81 2.17
445 446 6.554334 TTGATTTCTCAACGTTTAGAAGGG 57.446 37.500 20.70 0.87 36.46 3.95
569 572 6.732896 ATTACGATGATACACTCCCTCTTT 57.267 37.500 0.00 0.00 0.00 2.52
571 574 6.732896 AAATTACGATGATACACTCCCTCT 57.267 37.500 0.00 0.00 0.00 3.69
587 593 9.210426 GCATCACAAACTAAGATGTAAATTACG 57.790 33.333 0.00 0.00 40.86 3.18
946 961 7.099764 AGGGATGATAAAGCGACATGTAATAG 58.900 38.462 0.00 0.00 0.00 1.73
986 1001 5.337410 CCTGTCACCATGGATTAATTTTGCA 60.337 40.000 21.47 5.38 0.00 4.08
1152 1177 3.069980 GAGGATGTCCGCGCAGTCT 62.070 63.158 8.75 0.00 42.08 3.24
1205 1230 0.856641 CTTGTTCGTTTCGCCTTCGA 59.143 50.000 0.00 0.00 43.89 3.71
1206 1231 0.110823 CCTTGTTCGTTTCGCCTTCG 60.111 55.000 0.00 0.00 0.00 3.79
1355 1382 1.002366 CTTCTTGCTCGGACGATTGG 58.998 55.000 0.00 0.00 0.00 3.16
1519 1555 8.710835 ATTTTTAACCGTAAAATTATGCCAGG 57.289 30.769 0.00 0.00 38.63 4.45
1539 1575 8.829373 AGGCTTATAGAAATGACTGGATTTTT 57.171 30.769 0.00 0.00 0.00 1.94
1598 1634 5.799213 ACTTTTCTAGACCTCAATCACCTG 58.201 41.667 0.00 0.00 0.00 4.00
1610 1646 8.585189 TTAAGTTCGGAGAAACTTTTCTAGAC 57.415 34.615 4.18 2.33 46.84 2.59
1615 1651 8.490291 GAACATTAAGTTCGGAGAAACTTTTC 57.510 34.615 7.27 2.68 46.36 2.29
1640 1677 6.427150 AGCTAAATTATAATGTCCGTTTGCG 58.573 36.000 0.00 0.00 37.95 4.85
1671 1708 2.363683 AGGTAAAGGTAGACTCGTCGG 58.636 52.381 0.00 0.00 34.09 4.79
1680 1717 8.302438 TCTAAACGAAAGAGAAGGTAAAGGTAG 58.698 37.037 0.00 0.00 0.00 3.18
1684 1721 9.813080 CAAATCTAAACGAAAGAGAAGGTAAAG 57.187 33.333 0.00 0.00 0.00 1.85
1699 1736 6.856938 CCTAGACCGTATCTCAAATCTAAACG 59.143 42.308 0.00 0.00 39.04 3.60
1716 1753 3.118371 AGCCTAAATTGTTCCCTAGACCG 60.118 47.826 0.00 0.00 0.00 4.79
1718 1755 3.628032 GCAGCCTAAATTGTTCCCTAGAC 59.372 47.826 0.00 0.00 0.00 2.59
1728 1765 2.440501 CGCTAAACGCAGCCTAAATTG 58.559 47.619 0.00 0.00 38.37 2.32
1748 1785 8.094798 TCACATAAATCTTAACTCACCACAAC 57.905 34.615 0.00 0.00 0.00 3.32
1774 1811 7.602265 AGCAAATATAAGTTCGGCAAACAAAAT 59.398 29.630 4.30 0.00 40.56 1.82
1817 1856 2.441750 ACAGGTAGGCAAAAGGAAGTCA 59.558 45.455 0.00 0.00 0.00 3.41
1835 1874 6.312399 TGTTTTGTAGAATTAGCCACACAG 57.688 37.500 0.00 0.00 0.00 3.66
1909 1958 2.968697 CGCAGCTGCACACTGACA 60.969 61.111 36.03 0.00 42.21 3.58
1946 1995 2.442272 TACTCCTCGCCCTGGCTC 60.442 66.667 6.60 0.00 39.32 4.70
1947 1996 2.443016 CTACTCCTCGCCCTGGCT 60.443 66.667 6.60 0.00 39.32 4.75
1948 1997 3.541713 CCTACTCCTCGCCCTGGC 61.542 72.222 0.00 0.00 37.85 4.85
1949 1998 2.840102 CCCTACTCCTCGCCCTGG 60.840 72.222 0.00 0.00 0.00 4.45
1979 2055 0.767375 ATCCCCATCCAGTTCCATCG 59.233 55.000 0.00 0.00 0.00 3.84
1995 2100 3.990469 CGTGTATGGAAGCTATGTCATCC 59.010 47.826 0.00 0.00 0.00 3.51
2059 2164 4.949856 GGAGCCCTAAAACATGATTGAAGA 59.050 41.667 0.00 0.00 0.00 2.87
2074 2179 3.450904 ACAACTAGACATTGGAGCCCTA 58.549 45.455 0.00 0.00 0.00 3.53
2129 2234 6.215636 AGAAACTCCGGCATTATATAAGGGAT 59.784 38.462 9.05 0.00 0.00 3.85
2165 2271 3.937814 ACACAACACTGAAAGACACAGA 58.062 40.909 0.00 0.00 38.55 3.41
2191 2297 2.009774 CCCTTACCAGCAACGATTCAG 58.990 52.381 0.00 0.00 0.00 3.02
2194 2300 0.328258 AGCCCTTACCAGCAACGATT 59.672 50.000 0.00 0.00 0.00 3.34
2264 2370 8.768192 CCTCGTGGAATCTACATGACGAAAGT 62.768 46.154 0.00 0.00 41.69 2.66
2265 2371 4.421058 TCGTGGAATCTACATGACGAAAG 58.579 43.478 0.00 0.00 33.24 2.62
2295 2401 1.336887 CCACAACAGGTACGAGTGAGG 60.337 57.143 0.00 0.00 32.14 3.86
2303 2409 2.151202 CATGTCACCCACAACAGGTAC 58.849 52.381 0.00 0.00 38.97 3.34
2307 2413 1.238439 GTCCATGTCACCCACAACAG 58.762 55.000 0.00 0.00 38.97 3.16
2321 2427 2.027285 TGGTGTTCATGATGACGTCCAT 60.027 45.455 14.12 7.31 38.43 3.41
2355 2461 2.320367 CAACATAGCCTCTATCGACGC 58.680 52.381 0.00 0.00 0.00 5.19
2374 2480 3.433598 GCACCCTGTATATGAGAAAGGCA 60.434 47.826 0.00 0.00 0.00 4.75
2379 2485 4.165950 ACCAATGCACCCTGTATATGAGAA 59.834 41.667 0.00 0.00 0.00 2.87
2383 2489 6.939730 TGTATAACCAATGCACCCTGTATATG 59.060 38.462 0.00 0.00 0.00 1.78
2384 2490 7.085476 TGTATAACCAATGCACCCTGTATAT 57.915 36.000 0.00 0.00 0.00 0.86
2389 2495 5.105392 ACAAATGTATAACCAATGCACCCTG 60.105 40.000 0.00 0.00 32.59 4.45
2452 2560 1.160137 GCAAATGACGAAGCAGGACT 58.840 50.000 0.00 0.00 0.00 3.85
2541 2652 4.891260 TCTTCTCCAATGATCATCCATCG 58.109 43.478 9.06 0.00 33.61 3.84
2584 2719 1.964608 CTCGCTCCATCAGGCCTCAA 61.965 60.000 0.00 0.00 33.74 3.02
2588 2723 3.472943 ATGCTCGCTCCATCAGGCC 62.473 63.158 0.00 0.00 33.74 5.19
2589 2724 2.110627 ATGCTCGCTCCATCAGGC 59.889 61.111 0.00 0.00 33.74 4.85
2632 2772 3.984633 GCTCGTCCAGCTCTATGTTAATC 59.015 47.826 0.00 0.00 45.83 1.75
2817 2960 2.408565 TCCATTCCTCTCGGCCTTATT 58.591 47.619 0.00 0.00 0.00 1.40
2929 3072 7.305763 GGAAAGTAGCACAAAATTAACACAACG 60.306 37.037 0.00 0.00 0.00 4.10
2998 3141 9.822185 GGAAATTAATATTCATGCAAAACCTCT 57.178 29.630 0.00 0.00 0.00 3.69
2999 3142 8.755018 CGGAAATTAATATTCATGCAAAACCTC 58.245 33.333 0.00 0.00 0.00 3.85
3001 3144 7.708752 TCCGGAAATTAATATTCATGCAAAACC 59.291 33.333 0.00 0.00 0.00 3.27
3003 3146 9.658799 TTTCCGGAAATTAATATTCATGCAAAA 57.341 25.926 25.67 0.00 0.00 2.44
3015 3158 9.097257 CATGCAAAATACTTTCCGGAAATTAAT 57.903 29.630 29.05 18.09 0.00 1.40
3016 3159 8.307483 TCATGCAAAATACTTTCCGGAAATTAA 58.693 29.630 29.05 17.47 0.00 1.40
3017 3160 7.831753 TCATGCAAAATACTTTCCGGAAATTA 58.168 30.769 29.05 26.36 0.00 1.40
3018 3161 6.696411 TCATGCAAAATACTTTCCGGAAATT 58.304 32.000 29.05 25.11 0.00 1.82
3019 3162 6.279513 TCATGCAAAATACTTTCCGGAAAT 57.720 33.333 29.05 20.22 0.00 2.17
3020 3163 5.713792 TCATGCAAAATACTTTCCGGAAA 57.286 34.783 27.33 27.33 0.00 3.13
3021 3164 5.713792 TTCATGCAAAATACTTTCCGGAA 57.286 34.783 14.35 14.35 0.00 4.30
3022 3165 5.913137 ATTCATGCAAAATACTTTCCGGA 57.087 34.783 0.00 0.00 0.00 5.14
3023 3166 9.743057 TTAATATTCATGCAAAATACTTTCCGG 57.257 29.630 0.00 0.00 0.00 5.14
3032 3175 7.438757 TGATGCGCTTTAATATTCATGCAAAAT 59.561 29.630 9.73 0.00 34.45 1.82
3040 3183 5.009911 AGCCATTGATGCGCTTTAATATTCA 59.990 36.000 9.73 0.00 32.79 2.57
3044 3187 4.023792 CAGAGCCATTGATGCGCTTTAATA 60.024 41.667 9.73 0.00 36.71 0.98
3054 3197 4.970711 ACCTCTAATCAGAGCCATTGATG 58.029 43.478 0.00 0.00 46.08 3.07
3083 3229 1.632589 TGCTCTCACTAAGCTGGTCA 58.367 50.000 0.00 0.00 40.50 4.02
3084 3230 2.739379 GTTTGCTCTCACTAAGCTGGTC 59.261 50.000 0.00 0.00 40.50 4.02
3097 3243 2.401351 GACGAAACTACCGTTTGCTCT 58.599 47.619 0.00 0.00 43.09 4.09
3105 3251 2.477754 GGACAAAAGGACGAAACTACCG 59.522 50.000 0.00 0.00 0.00 4.02
3224 4942 4.048470 GGAGGGGGTTGTGGGAGC 62.048 72.222 0.00 0.00 0.00 4.70
3287 5005 4.208686 GCGGCTCCAGGGAGTACG 62.209 72.222 21.82 21.82 43.70 3.67
3288 5006 3.075005 TGCGGCTCCAGGGAGTAC 61.075 66.667 16.31 9.15 43.70 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.