Multiple sequence alignment - TraesCS7D01G518200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G518200 chr7D 100.000 2537 0 0 1 2537 616907220 616909756 0.000000e+00 4686.0
1 TraesCS7D01G518200 chr7D 84.306 720 85 20 836 1532 617117114 617116400 0.000000e+00 678.0
2 TraesCS7D01G518200 chr7D 100.000 57 0 0 2481 2537 616917852 616917796 3.450000e-19 106.0
3 TraesCS7D01G518200 chr7D 100.000 57 0 0 2481 2537 616924274 616924218 3.450000e-19 106.0
4 TraesCS7D01G518200 chr7D 100.000 56 0 0 2482 2537 506148425 506148370 1.240000e-18 104.0
5 TraesCS7D01G518200 chr7A 89.658 2195 158 24 320 2482 709673814 709675971 0.000000e+00 2732.0
6 TraesCS7D01G518200 chr7A 85.237 718 76 19 836 1532 709999024 709998316 0.000000e+00 712.0
7 TraesCS7D01G518200 chr7A 88.636 220 21 4 51 269 709673417 709673633 5.380000e-67 265.0
8 TraesCS7D01G518200 chr7B 95.951 568 20 2 1092 1658 711000738 711001303 0.000000e+00 918.0
9 TraesCS7D01G518200 chr7B 85.926 810 89 15 272 1069 710999958 711000754 0.000000e+00 841.0
10 TraesCS7D01G518200 chr7B 88.411 535 58 4 1829 2361 48883011 48882479 2.130000e-180 641.0
11 TraesCS7D01G518200 chr7B 89.520 458 42 4 1081 1532 711485321 711484864 2.190000e-160 575.0
12 TraesCS7D01G518200 chr7B 86.598 97 5 3 1663 1758 711001337 711001426 1.610000e-17 100.0
13 TraesCS7D01G518200 chr7B 89.552 67 7 0 2416 2482 711003437 711003503 4.500000e-13 86.1
14 TraesCS7D01G518200 chr5D 89.493 533 54 2 1830 2361 11436457 11436988 0.000000e+00 673.0
15 TraesCS7D01G518200 chr5D 98.333 60 1 0 2478 2537 4804592 4804651 3.450000e-19 106.0
16 TraesCS7D01G518200 chr3D 87.828 534 65 0 1828 2361 275950150 275949617 5.960000e-176 627.0
17 TraesCS7D01G518200 chr3D 100.000 58 0 0 2480 2537 434262330 434262387 9.600000e-20 108.0
18 TraesCS7D01G518200 chr6B 87.594 532 63 3 1831 2361 457224001 457224530 4.640000e-172 614.0
19 TraesCS7D01G518200 chr6B 85.289 537 69 7 1829 2361 631805201 631805731 1.720000e-151 545.0
20 TraesCS7D01G518200 chrUn 85.981 535 71 3 1830 2361 68460503 68461036 1.020000e-158 569.0
21 TraesCS7D01G518200 chrUn 98.246 57 1 0 2481 2537 27469051 27468995 1.610000e-17 100.0
22 TraesCS7D01G518200 chr5B 85.952 541 64 11 1829 2361 591244003 591244539 3.660000e-158 568.0
23 TraesCS7D01G518200 chr4D 83.148 540 77 11 1830 2361 113415528 113416061 4.910000e-132 481.0
24 TraesCS7D01G518200 chr4D 96.667 60 1 1 2476 2534 49894164 49894223 5.780000e-17 99.0
25 TraesCS7D01G518200 chr1A 77.033 209 44 4 1211 1417 503376942 503376736 1.590000e-22 117.0
26 TraesCS7D01G518200 chr1D 75.862 232 49 6 1211 1437 407878359 407878130 7.420000e-21 111.0
27 TraesCS7D01G518200 chr1B 76.555 209 45 4 1211 1417 548541158 548540952 7.420000e-21 111.0
28 TraesCS7D01G518200 chr2D 95.312 64 2 1 2475 2537 586571334 586571271 1.610000e-17 100.0
29 TraesCS7D01G518200 chr4B 96.610 59 2 0 2479 2537 17381224 17381282 5.780000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G518200 chr7D 616907220 616909756 2536 False 4686.000 4686 100.00000 1 2537 1 chr7D.!!$F1 2536
1 TraesCS7D01G518200 chr7D 617116400 617117114 714 True 678.000 678 84.30600 836 1532 1 chr7D.!!$R4 696
2 TraesCS7D01G518200 chr7A 709673417 709675971 2554 False 1498.500 2732 89.14700 51 2482 2 chr7A.!!$F1 2431
3 TraesCS7D01G518200 chr7A 709998316 709999024 708 True 712.000 712 85.23700 836 1532 1 chr7A.!!$R1 696
4 TraesCS7D01G518200 chr7B 48882479 48883011 532 True 641.000 641 88.41100 1829 2361 1 chr7B.!!$R1 532
5 TraesCS7D01G518200 chr7B 710999958 711003503 3545 False 486.275 918 89.50675 272 2482 4 chr7B.!!$F1 2210
6 TraesCS7D01G518200 chr5D 11436457 11436988 531 False 673.000 673 89.49300 1830 2361 1 chr5D.!!$F2 531
7 TraesCS7D01G518200 chr3D 275949617 275950150 533 True 627.000 627 87.82800 1828 2361 1 chr3D.!!$R1 533
8 TraesCS7D01G518200 chr6B 457224001 457224530 529 False 614.000 614 87.59400 1831 2361 1 chr6B.!!$F1 530
9 TraesCS7D01G518200 chr6B 631805201 631805731 530 False 545.000 545 85.28900 1829 2361 1 chr6B.!!$F2 532
10 TraesCS7D01G518200 chrUn 68460503 68461036 533 False 569.000 569 85.98100 1830 2361 1 chrUn.!!$F1 531
11 TraesCS7D01G518200 chr5B 591244003 591244539 536 False 568.000 568 85.95200 1829 2361 1 chr5B.!!$F1 532
12 TraesCS7D01G518200 chr4D 113415528 113416061 533 False 481.000 481 83.14800 1830 2361 1 chr4D.!!$F2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.179081 GTTGGGTCGATAGGACTGGC 60.179 60.0 0.0 0.0 45.35 4.85 F
407 538 0.325296 AATCCGCCCTCTAGTCCACA 60.325 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1277 0.178973 TCTTGGAGTGGACGTGGAGA 60.179 55.0 0.0 0.0 0.0 3.71 R
2160 2394 0.404040 GGGTGGTTGGATCTGGTGAA 59.596 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.021177 AGGGTCAGACCTAGAGTTAGC 57.979 52.381 19.57 0.00 39.65 3.09
27 28 2.312140 AGGGTCAGACCTAGAGTTAGCA 59.688 50.000 19.57 0.00 39.65 3.49
28 29 3.097614 GGGTCAGACCTAGAGTTAGCAA 58.902 50.000 19.57 0.00 38.64 3.91
29 30 3.514309 GGGTCAGACCTAGAGTTAGCAAA 59.486 47.826 19.57 0.00 38.64 3.68
30 31 4.382147 GGGTCAGACCTAGAGTTAGCAAAG 60.382 50.000 19.57 0.00 38.64 2.77
31 32 4.177783 GTCAGACCTAGAGTTAGCAAAGC 58.822 47.826 0.00 0.00 0.00 3.51
32 33 3.119459 TCAGACCTAGAGTTAGCAAAGCG 60.119 47.826 0.00 0.00 0.00 4.68
33 34 2.826725 AGACCTAGAGTTAGCAAAGCGT 59.173 45.455 0.00 0.00 0.00 5.07
34 35 4.015084 AGACCTAGAGTTAGCAAAGCGTA 58.985 43.478 0.00 0.00 0.00 4.42
35 36 4.461781 AGACCTAGAGTTAGCAAAGCGTAA 59.538 41.667 0.00 0.00 0.00 3.18
36 37 5.047519 AGACCTAGAGTTAGCAAAGCGTAAA 60.048 40.000 0.00 0.00 0.00 2.01
37 38 5.731591 ACCTAGAGTTAGCAAAGCGTAAAT 58.268 37.500 0.00 0.00 0.00 1.40
38 39 6.171213 ACCTAGAGTTAGCAAAGCGTAAATT 58.829 36.000 0.00 0.00 0.00 1.82
39 40 7.325694 ACCTAGAGTTAGCAAAGCGTAAATTA 58.674 34.615 0.00 0.00 0.00 1.40
40 41 7.820872 ACCTAGAGTTAGCAAAGCGTAAATTAA 59.179 33.333 0.00 0.00 0.00 1.40
41 42 8.328864 CCTAGAGTTAGCAAAGCGTAAATTAAG 58.671 37.037 0.00 0.00 0.00 1.85
42 43 7.900782 AGAGTTAGCAAAGCGTAAATTAAGA 57.099 32.000 0.00 0.00 0.00 2.10
43 44 8.319143 AGAGTTAGCAAAGCGTAAATTAAGAA 57.681 30.769 0.00 0.00 0.00 2.52
44 45 8.228464 AGAGTTAGCAAAGCGTAAATTAAGAAC 58.772 33.333 0.00 0.00 0.00 3.01
45 46 8.095937 AGTTAGCAAAGCGTAAATTAAGAACT 57.904 30.769 0.00 0.00 0.00 3.01
46 47 8.565416 AGTTAGCAAAGCGTAAATTAAGAACTT 58.435 29.630 0.00 0.00 0.00 2.66
47 48 8.627428 GTTAGCAAAGCGTAAATTAAGAACTTG 58.373 33.333 0.00 0.00 0.00 3.16
48 49 6.966021 AGCAAAGCGTAAATTAAGAACTTGA 58.034 32.000 0.00 0.00 0.00 3.02
49 50 7.422399 AGCAAAGCGTAAATTAAGAACTTGAA 58.578 30.769 0.00 0.00 0.00 2.69
53 54 7.130303 AGCGTAAATTAAGAACTTGAACCTC 57.870 36.000 0.00 0.00 0.00 3.85
56 57 8.715088 GCGTAAATTAAGAACTTGAACCTCTAA 58.285 33.333 0.00 0.00 0.00 2.10
67 68 4.778213 TGAACCTCTAATGGGATCAAGG 57.222 45.455 0.00 0.00 0.00 3.61
79 80 1.680207 GGATCAAGGCATTCCTCTTGC 59.320 52.381 0.00 0.00 43.40 4.01
81 82 1.138247 CAAGGCATTCCTCTTGCGC 59.862 57.895 0.00 0.00 43.40 6.09
118 119 1.286248 TTCAAGACCCCTAAGGCTCC 58.714 55.000 0.00 0.00 40.58 4.70
132 133 4.900154 CTCCGTGGAGCTCAAGAC 57.100 61.111 17.19 7.83 35.31 3.01
135 136 1.216710 CCGTGGAGCTCAAGACCTC 59.783 63.158 17.19 0.00 0.00 3.85
151 152 6.098982 TCAAGACCTCCATCTCTTAGGATTTC 59.901 42.308 0.00 0.00 34.34 2.17
154 155 3.007398 CCTCCATCTCTTAGGATTTCGGG 59.993 52.174 0.00 0.00 32.53 5.14
157 158 5.651303 TCCATCTCTTAGGATTTCGGGATA 58.349 41.667 0.00 0.00 0.00 2.59
158 159 6.082031 TCCATCTCTTAGGATTTCGGGATAA 58.918 40.000 0.00 0.00 0.00 1.75
188 189 1.614317 CGCTTGTCCCTTTCTCCCATT 60.614 52.381 0.00 0.00 0.00 3.16
189 190 2.529632 GCTTGTCCCTTTCTCCCATTT 58.470 47.619 0.00 0.00 0.00 2.32
201 202 1.812571 CTCCCATTTCGAGTTGTTGGG 59.187 52.381 11.75 11.75 46.99 4.12
207 208 3.663995 TTTCGAGTTGTTGGGTCGATA 57.336 42.857 0.00 0.00 42.01 2.92
212 213 2.496470 GAGTTGTTGGGTCGATAGGACT 59.504 50.000 0.00 0.00 45.35 3.85
215 216 0.179081 GTTGGGTCGATAGGACTGGC 60.179 60.000 0.00 0.00 45.35 4.85
247 248 8.561738 AACTTTATTCGTGAGATGTATGGTTT 57.438 30.769 0.00 0.00 41.60 3.27
248 249 9.661563 AACTTTATTCGTGAGATGTATGGTTTA 57.338 29.630 0.00 0.00 41.60 2.01
265 266 4.019321 TGGTTTACTTGAGGCTCTTATGCT 60.019 41.667 16.72 0.00 0.00 3.79
269 270 6.791867 TTACTTGAGGCTCTTATGCTTCTA 57.208 37.500 16.72 0.00 39.39 2.10
270 271 5.885449 ACTTGAGGCTCTTATGCTTCTAT 57.115 39.130 16.72 0.00 39.39 1.98
284 285 3.820467 TGCTTCTATTTGTGTCCTTGTGG 59.180 43.478 0.00 0.00 0.00 4.17
306 307 4.320275 GGTTGTTTGTGTTTAGCCTCTAGC 60.320 45.833 0.00 0.00 44.25 3.42
318 319 3.726291 GCCTCTAGCTCTTAGGTCTTG 57.274 52.381 9.86 0.00 38.99 3.02
331 462 3.146104 AGGTCTTGGTGTTCTTCATGG 57.854 47.619 0.00 0.00 0.00 3.66
337 468 3.593442 TGGTGTTCTTCATGGTTCCTT 57.407 42.857 0.00 0.00 0.00 3.36
338 469 4.715534 TGGTGTTCTTCATGGTTCCTTA 57.284 40.909 0.00 0.00 0.00 2.69
343 474 5.710099 GTGTTCTTCATGGTTCCTTATCCAA 59.290 40.000 0.00 0.00 37.27 3.53
348 479 6.953520 TCTTCATGGTTCCTTATCCAATTTGT 59.046 34.615 0.00 0.00 37.27 2.83
365 496 9.265862 TCCAATTTGTAAATATCCATCAAACCT 57.734 29.630 0.00 0.00 32.25 3.50
366 497 9.316730 CCAATTTGTAAATATCCATCAAACCTG 57.683 33.333 0.00 0.00 32.25 4.00
372 503 8.682710 TGTAAATATCCATCAAACCTGCTAAAC 58.317 33.333 0.00 0.00 0.00 2.01
376 507 3.938963 TCCATCAAACCTGCTAAACGATC 59.061 43.478 0.00 0.00 0.00 3.69
377 508 3.065371 CCATCAAACCTGCTAAACGATCC 59.935 47.826 0.00 0.00 0.00 3.36
386 517 2.049228 GCTAAACGATCCGTATCACCG 58.951 52.381 0.00 0.00 39.99 4.94
389 520 3.781079 AAACGATCCGTATCACCGTAA 57.219 42.857 0.00 0.00 39.99 3.18
404 535 0.597072 CGTAATCCGCCCTCTAGTCC 59.403 60.000 0.00 0.00 0.00 3.85
406 537 1.340568 GTAATCCGCCCTCTAGTCCAC 59.659 57.143 0.00 0.00 0.00 4.02
407 538 0.325296 AATCCGCCCTCTAGTCCACA 60.325 55.000 0.00 0.00 0.00 4.17
411 542 0.457851 CGCCCTCTAGTCCACAAGAG 59.542 60.000 0.00 0.00 39.19 2.85
429 560 2.107726 AGAGTTTTGTTGGACTACCCCC 59.892 50.000 0.00 0.00 34.81 5.40
430 561 1.202842 AGTTTTGTTGGACTACCCCCG 60.203 52.381 0.00 0.00 34.81 5.73
431 562 1.138568 TTTTGTTGGACTACCCCCGA 58.861 50.000 0.00 0.00 34.81 5.14
432 563 1.138568 TTTGTTGGACTACCCCCGAA 58.861 50.000 0.00 0.00 34.81 4.30
433 564 1.364269 TTGTTGGACTACCCCCGAAT 58.636 50.000 0.00 0.00 34.81 3.34
434 565 2.250921 TGTTGGACTACCCCCGAATA 57.749 50.000 0.00 0.00 34.81 1.75
435 566 2.112998 TGTTGGACTACCCCCGAATAG 58.887 52.381 0.00 0.00 34.81 1.73
436 567 2.292389 TGTTGGACTACCCCCGAATAGA 60.292 50.000 0.00 0.00 34.81 1.98
437 568 2.970640 GTTGGACTACCCCCGAATAGAT 59.029 50.000 0.00 0.00 34.81 1.98
438 569 2.605257 TGGACTACCCCCGAATAGATG 58.395 52.381 0.00 0.00 34.81 2.90
439 570 2.178325 TGGACTACCCCCGAATAGATGA 59.822 50.000 0.00 0.00 34.81 2.92
440 571 2.561858 GGACTACCCCCGAATAGATGAC 59.438 54.545 0.00 0.00 0.00 3.06
441 572 2.561858 GACTACCCCCGAATAGATGACC 59.438 54.545 0.00 0.00 0.00 4.02
442 573 2.179424 ACTACCCCCGAATAGATGACCT 59.821 50.000 0.00 0.00 0.00 3.85
443 574 3.400322 ACTACCCCCGAATAGATGACCTA 59.600 47.826 0.00 0.00 0.00 3.08
444 575 3.562108 ACCCCCGAATAGATGACCTAT 57.438 47.619 0.00 0.00 39.70 2.57
487 633 5.449177 GGCCTAAATCTTGTTTTGATCTCCG 60.449 44.000 0.00 0.00 0.00 4.63
494 640 3.896648 TGTTTTGATCTCCGCTCAAAC 57.103 42.857 0.00 0.00 41.10 2.93
511 657 0.607489 AACAATGGCGCTCAAGCTCT 60.607 50.000 7.64 0.00 39.32 4.09
534 680 3.059884 CCACTGTGTGCCGATATGATAC 58.940 50.000 7.08 0.00 31.34 2.24
537 683 0.708370 GTGTGCCGATATGATACGCG 59.292 55.000 3.53 3.53 0.00 6.01
542 688 1.629013 CCGATATGATACGCGTGCAT 58.371 50.000 24.59 25.15 0.00 3.96
544 690 1.321445 CGATATGATACGCGTGCATGG 59.679 52.381 28.41 18.09 0.00 3.66
545 691 2.337583 GATATGATACGCGTGCATGGT 58.662 47.619 28.41 20.34 0.00 3.55
549 695 3.967393 ATACGCGTGCATGGTGGCA 62.967 57.895 24.59 0.00 42.53 4.92
567 713 1.747355 GCAATGGTTCATGGAGGAGTG 59.253 52.381 0.00 0.00 0.00 3.51
588 734 3.127533 GAGATGGGTGGCGTGTGC 61.128 66.667 0.00 0.00 41.71 4.57
598 744 2.672996 GCGTGTGCCAAGGTCCAT 60.673 61.111 0.00 0.00 33.98 3.41
660 806 2.690778 GCATCGGTTCAGGTGGTGC 61.691 63.158 0.00 0.00 0.00 5.01
664 810 2.110213 GGTTCAGGTGGTGCGACA 59.890 61.111 0.00 0.00 0.00 4.35
679 825 2.805277 GACAACGTCGGTGGTACAG 58.195 57.895 15.94 0.00 41.80 2.74
680 826 0.665369 GACAACGTCGGTGGTACAGG 60.665 60.000 15.94 0.00 41.80 4.00
681 827 2.025418 CAACGTCGGTGGTACAGGC 61.025 63.158 1.18 0.00 41.80 4.85
682 828 2.500714 AACGTCGGTGGTACAGGCA 61.501 57.895 0.00 0.00 41.80 4.75
683 829 2.431942 CGTCGGTGGTACAGGCAC 60.432 66.667 0.00 0.00 41.80 5.01
684 830 2.431942 GTCGGTGGTACAGGCACG 60.432 66.667 0.00 0.00 41.80 5.34
685 831 4.367023 TCGGTGGTACAGGCACGC 62.367 66.667 0.00 0.00 41.80 5.34
749 895 6.289482 TCCCTCTCAGTAATATTCCCTACA 57.711 41.667 0.00 0.00 0.00 2.74
754 900 6.143915 TCTCAGTAATATTCCCTACAGGCTT 58.856 40.000 0.00 0.00 34.51 4.35
755 901 6.615726 TCTCAGTAATATTCCCTACAGGCTTT 59.384 38.462 0.00 0.00 34.51 3.51
782 928 4.451900 TCCTCTGGAAAAAGGCGAATATC 58.548 43.478 0.00 0.00 32.37 1.63
812 958 1.272769 GTCGGTTGCTACTTCTGGTCT 59.727 52.381 0.00 0.00 0.00 3.85
883 1035 4.705023 TCTCATCATGTCGACACCTTTCTA 59.295 41.667 22.71 1.91 0.00 2.10
953 1107 2.669569 GCGTCTCCAAGCCAAGCA 60.670 61.111 0.00 0.00 0.00 3.91
1056 1226 2.576832 GCAGGTTGCTTGCACCCAT 61.577 57.895 11.60 0.00 40.96 4.00
1098 1268 3.174987 CACCACCTCCCCCACACA 61.175 66.667 0.00 0.00 0.00 3.72
1107 1277 2.595095 CCCCACACACACACCTGT 59.405 61.111 0.00 0.00 0.00 4.00
1437 1610 2.437895 GGCGCCTTCCCTTACCAC 60.438 66.667 22.15 0.00 0.00 4.16
1596 1782 0.978146 AGGTAGTGGGCTAGTGCTGG 60.978 60.000 0.00 0.00 39.59 4.85
1599 1785 0.687757 TAGTGGGCTAGTGCTGGAGG 60.688 60.000 0.00 0.00 39.59 4.30
1685 1901 8.490355 GCAAGTTGATCAAAACTTTAGATTTGG 58.510 33.333 10.35 0.00 45.84 3.28
1709 1925 4.003648 GTCCCACATGGTTTAGTCTTCAG 58.996 47.826 0.00 0.00 34.77 3.02
1710 1926 3.650942 TCCCACATGGTTTAGTCTTCAGT 59.349 43.478 0.00 0.00 34.77 3.41
1711 1927 4.841813 TCCCACATGGTTTAGTCTTCAGTA 59.158 41.667 0.00 0.00 34.77 2.74
1712 1928 5.046591 TCCCACATGGTTTAGTCTTCAGTAG 60.047 44.000 0.00 0.00 34.77 2.57
1713 1929 5.046591 CCCACATGGTTTAGTCTTCAGTAGA 60.047 44.000 0.00 0.00 0.00 2.59
1714 1930 6.352222 CCCACATGGTTTAGTCTTCAGTAGAT 60.352 42.308 0.00 0.00 34.79 1.98
1760 1976 4.969484 TCACTCTGGTTCTTTTTACTCCC 58.031 43.478 0.00 0.00 0.00 4.30
1764 1980 5.162980 ACTCTGGTTCTTTTTACTCCCCATT 60.163 40.000 0.00 0.00 0.00 3.16
1770 1986 8.769359 TGGTTCTTTTTACTCCCCATTTAAAAA 58.231 29.630 0.00 0.00 34.86 1.94
1801 2017 9.796120 TCTGAAATCAAACTTCGTAAATTTTGT 57.204 25.926 0.00 0.00 36.75 2.83
1913 2141 3.941188 CACACACCCGGCCTCTGT 61.941 66.667 0.00 0.00 0.00 3.41
1947 2175 2.618241 CACACAGCTAACACCAACACAT 59.382 45.455 0.00 0.00 0.00 3.21
2066 2300 5.698832 TGATCGGCAAACTAAAACAATGAG 58.301 37.500 0.00 0.00 0.00 2.90
2104 2338 2.038659 TCTCATGACACCACACAGACA 58.961 47.619 0.00 0.00 0.00 3.41
2160 2394 4.170292 GAGCAACACTCAAGCATCATTT 57.830 40.909 0.00 0.00 45.49 2.32
2179 2414 0.404040 TTCACCAGATCCAACCACCC 59.596 55.000 0.00 0.00 0.00 4.61
2225 2460 5.469421 CCCTGAAGAATCAATCTGAGCATAC 59.531 44.000 0.00 0.00 38.79 2.39
2341 2776 1.134965 GCGACCTGATGCTTGAGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
2348 4190 4.343526 CCTGATGCTTGAGTAGTACCATCT 59.656 45.833 13.97 0.00 32.48 2.90
2363 4205 7.246171 AGTACCATCTAAGTCATCAAGTTGT 57.754 36.000 2.11 0.00 0.00 3.32
2364 4206 7.099764 AGTACCATCTAAGTCATCAAGTTGTG 58.900 38.462 2.11 1.21 0.00 3.33
2368 4210 7.050377 CCATCTAAGTCATCAAGTTGTGGTAT 58.950 38.462 2.11 0.00 0.00 2.73
2376 4218 6.595326 GTCATCAAGTTGTGGTATCATCAAGA 59.405 38.462 2.11 0.00 0.00 3.02
2405 4247 8.867112 TTACAATTACGACTATAAGCCAGAAG 57.133 34.615 0.00 0.00 0.00 2.85
2411 4253 9.862371 ATTACGACTATAAGCCAGAAGATAATG 57.138 33.333 0.00 0.00 0.00 1.90
2464 4306 7.134362 AGAGCCAGAAGATAATCTCAAATCA 57.866 36.000 0.00 0.00 0.00 2.57
2482 4324 4.741239 GGCAGGACAGGGGAGGGA 62.741 72.222 0.00 0.00 0.00 4.20
2483 4325 3.086600 GCAGGACAGGGGAGGGAG 61.087 72.222 0.00 0.00 0.00 4.30
2484 4326 2.780693 CAGGACAGGGGAGGGAGA 59.219 66.667 0.00 0.00 0.00 3.71
2485 4327 1.316266 CAGGACAGGGGAGGGAGAT 59.684 63.158 0.00 0.00 0.00 2.75
2486 4328 0.563173 CAGGACAGGGGAGGGAGATA 59.437 60.000 0.00 0.00 0.00 1.98
2487 4329 1.062121 CAGGACAGGGGAGGGAGATAA 60.062 57.143 0.00 0.00 0.00 1.75
2488 4330 1.657162 AGGACAGGGGAGGGAGATAAA 59.343 52.381 0.00 0.00 0.00 1.40
2489 4331 2.254023 AGGACAGGGGAGGGAGATAAAT 59.746 50.000 0.00 0.00 0.00 1.40
2490 4332 3.056832 GGACAGGGGAGGGAGATAAATT 58.943 50.000 0.00 0.00 0.00 1.82
2491 4333 3.073209 GGACAGGGGAGGGAGATAAATTC 59.927 52.174 0.00 0.00 0.00 2.17
2492 4334 3.716872 GACAGGGGAGGGAGATAAATTCA 59.283 47.826 0.00 0.00 0.00 2.57
2493 4335 3.459969 ACAGGGGAGGGAGATAAATTCAC 59.540 47.826 0.00 0.00 0.00 3.18
2494 4336 3.056832 AGGGGAGGGAGATAAATTCACC 58.943 50.000 0.00 0.00 34.56 4.02
2498 4340 1.226746 GGGAGATAAATTCACCCGCG 58.773 55.000 0.00 0.00 44.17 6.46
2499 4341 1.226746 GGAGATAAATTCACCCGCGG 58.773 55.000 21.04 21.04 0.00 6.46
2500 4342 1.474498 GGAGATAAATTCACCCGCGGT 60.474 52.381 26.12 9.63 35.62 5.68
2501 4343 1.865340 GAGATAAATTCACCCGCGGTC 59.135 52.381 26.12 11.59 31.02 4.79
2502 4344 1.208535 AGATAAATTCACCCGCGGTCA 59.791 47.619 26.12 3.75 31.02 4.02
2503 4345 1.329599 GATAAATTCACCCGCGGTCAC 59.670 52.381 26.12 0.00 31.02 3.67
2504 4346 0.322322 TAAATTCACCCGCGGTCACT 59.678 50.000 26.12 1.00 31.02 3.41
2505 4347 1.234615 AAATTCACCCGCGGTCACTG 61.235 55.000 26.12 13.35 31.02 3.66
2506 4348 2.391724 AATTCACCCGCGGTCACTGT 62.392 55.000 26.12 11.69 31.02 3.55
2507 4349 1.537814 ATTCACCCGCGGTCACTGTA 61.538 55.000 26.12 7.71 31.02 2.74
2508 4350 1.537814 TTCACCCGCGGTCACTGTAT 61.538 55.000 26.12 0.00 31.02 2.29
2509 4351 1.079405 CACCCGCGGTCACTGTATT 60.079 57.895 26.12 0.00 31.02 1.89
2510 4352 0.672401 CACCCGCGGTCACTGTATTT 60.672 55.000 26.12 0.00 31.02 1.40
2511 4353 0.672401 ACCCGCGGTCACTGTATTTG 60.672 55.000 26.12 6.21 0.00 2.32
2512 4354 0.390603 CCCGCGGTCACTGTATTTGA 60.391 55.000 26.12 0.00 0.00 2.69
2513 4355 1.651987 CCGCGGTCACTGTATTTGAT 58.348 50.000 19.50 0.00 0.00 2.57
2514 4356 1.593006 CCGCGGTCACTGTATTTGATC 59.407 52.381 19.50 0.00 0.00 2.92
2515 4357 2.267426 CGCGGTCACTGTATTTGATCA 58.733 47.619 0.00 0.00 0.00 2.92
2516 4358 2.029244 CGCGGTCACTGTATTTGATCAC 59.971 50.000 0.00 0.00 0.00 3.06
2517 4359 3.000041 GCGGTCACTGTATTTGATCACA 59.000 45.455 0.00 0.00 0.00 3.58
2518 4360 3.435327 GCGGTCACTGTATTTGATCACAA 59.565 43.478 0.00 0.00 0.00 3.33
2520 4362 5.621422 CGGTCACTGTATTTGATCACAAAG 58.379 41.667 0.00 0.00 46.84 2.77
2521 4363 5.179368 CGGTCACTGTATTTGATCACAAAGT 59.821 40.000 0.00 0.00 46.84 2.66
2522 4364 6.293407 CGGTCACTGTATTTGATCACAAAGTT 60.293 38.462 0.00 0.00 46.84 2.66
2523 4365 7.078228 GGTCACTGTATTTGATCACAAAGTTC 58.922 38.462 0.00 0.00 46.84 3.01
2524 4366 7.255104 GGTCACTGTATTTGATCACAAAGTTCA 60.255 37.037 0.00 0.00 46.84 3.18
2525 4367 7.587757 GTCACTGTATTTGATCACAAAGTTCAC 59.412 37.037 0.00 0.00 46.84 3.18
2526 4368 7.498900 TCACTGTATTTGATCACAAAGTTCACT 59.501 33.333 0.00 0.00 46.84 3.41
2527 4369 8.131100 CACTGTATTTGATCACAAAGTTCACTT 58.869 33.333 0.00 0.00 46.84 3.16
2528 4370 8.686334 ACTGTATTTGATCACAAAGTTCACTTT 58.314 29.630 0.00 0.00 46.84 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.526430 TGCTAACTCTAGGTCTGACCCTA 59.474 47.826 22.81 13.12 39.75 3.53
6 7 2.312140 TGCTAACTCTAGGTCTGACCCT 59.688 50.000 22.81 12.69 39.75 4.34
7 8 2.736347 TGCTAACTCTAGGTCTGACCC 58.264 52.381 22.81 5.74 39.75 4.46
8 9 4.749976 CTTTGCTAACTCTAGGTCTGACC 58.250 47.826 19.20 19.20 38.99 4.02
9 10 4.177783 GCTTTGCTAACTCTAGGTCTGAC 58.822 47.826 0.00 0.00 0.00 3.51
10 11 3.119459 CGCTTTGCTAACTCTAGGTCTGA 60.119 47.826 0.00 0.00 0.00 3.27
11 12 3.182967 CGCTTTGCTAACTCTAGGTCTG 58.817 50.000 0.00 0.00 0.00 3.51
12 13 2.826725 ACGCTTTGCTAACTCTAGGTCT 59.173 45.455 0.00 0.00 0.00 3.85
13 14 3.233684 ACGCTTTGCTAACTCTAGGTC 57.766 47.619 0.00 0.00 0.00 3.85
14 15 4.796038 TTACGCTTTGCTAACTCTAGGT 57.204 40.909 0.00 0.00 0.00 3.08
15 16 6.663944 AATTTACGCTTTGCTAACTCTAGG 57.336 37.500 0.00 0.00 0.00 3.02
16 17 9.084164 TCTTAATTTACGCTTTGCTAACTCTAG 57.916 33.333 0.00 0.00 0.00 2.43
17 18 8.991243 TCTTAATTTACGCTTTGCTAACTCTA 57.009 30.769 0.00 0.00 0.00 2.43
18 19 7.900782 TCTTAATTTACGCTTTGCTAACTCT 57.099 32.000 0.00 0.00 0.00 3.24
19 20 8.228464 AGTTCTTAATTTACGCTTTGCTAACTC 58.772 33.333 0.00 0.00 0.00 3.01
20 21 8.095937 AGTTCTTAATTTACGCTTTGCTAACT 57.904 30.769 0.00 0.00 0.00 2.24
21 22 8.627428 CAAGTTCTTAATTTACGCTTTGCTAAC 58.373 33.333 0.00 0.00 0.00 2.34
22 23 8.561212 TCAAGTTCTTAATTTACGCTTTGCTAA 58.439 29.630 0.00 0.00 0.00 3.09
23 24 8.090250 TCAAGTTCTTAATTTACGCTTTGCTA 57.910 30.769 0.00 0.00 0.00 3.49
24 25 6.966021 TCAAGTTCTTAATTTACGCTTTGCT 58.034 32.000 0.00 0.00 0.00 3.91
25 26 7.358105 GGTTCAAGTTCTTAATTTACGCTTTGC 60.358 37.037 0.00 0.00 0.00 3.68
26 27 7.860872 AGGTTCAAGTTCTTAATTTACGCTTTG 59.139 33.333 0.00 0.00 0.00 2.77
27 28 7.937649 AGGTTCAAGTTCTTAATTTACGCTTT 58.062 30.769 0.00 0.00 0.00 3.51
28 29 7.444487 AGAGGTTCAAGTTCTTAATTTACGCTT 59.556 33.333 0.00 0.00 0.00 4.68
29 30 6.935208 AGAGGTTCAAGTTCTTAATTTACGCT 59.065 34.615 0.00 0.00 0.00 5.07
30 31 7.130303 AGAGGTTCAAGTTCTTAATTTACGC 57.870 36.000 0.00 0.00 0.00 4.42
34 35 9.025041 CCCATTAGAGGTTCAAGTTCTTAATTT 57.975 33.333 0.00 0.00 0.00 1.82
35 36 8.390921 TCCCATTAGAGGTTCAAGTTCTTAATT 58.609 33.333 0.00 0.00 0.00 1.40
36 37 7.928873 TCCCATTAGAGGTTCAAGTTCTTAAT 58.071 34.615 0.00 0.00 0.00 1.40
37 38 7.324388 TCCCATTAGAGGTTCAAGTTCTTAA 57.676 36.000 0.00 0.00 0.00 1.85
38 39 6.945636 TCCCATTAGAGGTTCAAGTTCTTA 57.054 37.500 0.00 0.00 0.00 2.10
39 40 5.843019 TCCCATTAGAGGTTCAAGTTCTT 57.157 39.130 0.00 0.00 0.00 2.52
40 41 5.488919 TGATCCCATTAGAGGTTCAAGTTCT 59.511 40.000 0.00 0.00 31.62 3.01
41 42 5.745227 TGATCCCATTAGAGGTTCAAGTTC 58.255 41.667 0.00 0.00 31.62 3.01
42 43 5.779241 TGATCCCATTAGAGGTTCAAGTT 57.221 39.130 0.00 0.00 31.62 2.66
43 44 5.749462 CTTGATCCCATTAGAGGTTCAAGT 58.251 41.667 16.98 0.00 46.69 3.16
45 46 4.628715 GCCTTGATCCCATTAGAGGTTCAA 60.629 45.833 0.00 0.00 39.60 2.69
46 47 3.117888 GCCTTGATCCCATTAGAGGTTCA 60.118 47.826 0.00 0.00 32.49 3.18
47 48 3.117888 TGCCTTGATCCCATTAGAGGTTC 60.118 47.826 0.00 0.00 0.00 3.62
48 49 2.852449 TGCCTTGATCCCATTAGAGGTT 59.148 45.455 0.00 0.00 0.00 3.50
49 50 2.492025 TGCCTTGATCCCATTAGAGGT 58.508 47.619 0.00 0.00 0.00 3.85
53 54 4.109877 AGGAATGCCTTGATCCCATTAG 57.890 45.455 0.00 0.00 43.90 1.73
67 68 3.895025 TCTGCGCAAGAGGAATGC 58.105 55.556 13.05 0.00 43.02 3.56
79 80 3.742433 ATTTCATAGGAGTCCTCTGCG 57.258 47.619 17.09 2.74 37.11 5.18
81 82 6.760770 GTCTTGAATTTCATAGGAGTCCTCTG 59.239 42.308 17.09 16.84 34.61 3.35
118 119 1.216710 GGAGGTCTTGAGCTCCACG 59.783 63.158 31.91 0.00 36.11 4.94
132 133 3.007398 CCCGAAATCCTAAGAGATGGAGG 59.993 52.174 0.00 0.00 35.63 4.30
135 136 4.899352 ATCCCGAAATCCTAAGAGATGG 57.101 45.455 0.00 0.00 0.00 3.51
154 155 6.465084 AGGGACAAGCGTAGGATAATTTATC 58.535 40.000 7.73 7.73 34.42 1.75
157 158 4.772886 AGGGACAAGCGTAGGATAATTT 57.227 40.909 0.00 0.00 0.00 1.82
158 159 4.772886 AAGGGACAAGCGTAGGATAATT 57.227 40.909 0.00 0.00 0.00 1.40
167 168 1.375326 GGGAGAAAGGGACAAGCGT 59.625 57.895 0.00 0.00 0.00 5.07
169 170 2.222227 AATGGGAGAAAGGGACAAGC 57.778 50.000 0.00 0.00 0.00 4.01
170 171 2.749621 CGAAATGGGAGAAAGGGACAAG 59.250 50.000 0.00 0.00 0.00 3.16
172 173 1.982226 TCGAAATGGGAGAAAGGGACA 59.018 47.619 0.00 0.00 0.00 4.02
173 174 2.027100 ACTCGAAATGGGAGAAAGGGAC 60.027 50.000 0.00 0.00 35.49 4.46
174 175 2.266279 ACTCGAAATGGGAGAAAGGGA 58.734 47.619 0.00 0.00 35.49 4.20
175 176 2.749621 CAACTCGAAATGGGAGAAAGGG 59.250 50.000 0.00 0.00 35.49 3.95
188 189 2.094390 CCTATCGACCCAACAACTCGAA 60.094 50.000 0.00 0.00 39.71 3.71
189 190 1.475280 CCTATCGACCCAACAACTCGA 59.525 52.381 0.00 0.00 40.51 4.04
201 202 0.674534 ATTCGGCCAGTCCTATCGAC 59.325 55.000 2.24 0.00 42.32 4.20
207 208 3.434940 AAAGTTTATTCGGCCAGTCCT 57.565 42.857 2.24 0.00 0.00 3.85
247 248 6.985653 ATAGAAGCATAAGAGCCTCAAGTA 57.014 37.500 0.00 0.00 34.23 2.24
248 249 5.885449 ATAGAAGCATAAGAGCCTCAAGT 57.115 39.130 0.00 0.00 34.23 3.16
265 266 5.197451 ACAACCACAAGGACACAAATAGAA 58.803 37.500 0.00 0.00 38.69 2.10
269 270 4.020662 ACAAACAACCACAAGGACACAAAT 60.021 37.500 0.00 0.00 38.69 2.32
270 271 3.322254 ACAAACAACCACAAGGACACAAA 59.678 39.130 0.00 0.00 38.69 2.83
284 285 4.784329 GCTAGAGGCTAAACACAAACAAC 58.216 43.478 0.00 0.00 38.06 3.32
306 307 5.215252 TGAAGAACACCAAGACCTAAGAG 57.785 43.478 0.00 0.00 0.00 2.85
318 319 4.640647 GGATAAGGAACCATGAAGAACACC 59.359 45.833 0.00 0.00 0.00 4.16
343 474 8.310122 AGCAGGTTTGATGGATATTTACAAAT 57.690 30.769 0.00 0.00 34.02 2.32
348 479 7.771361 TCGTTTAGCAGGTTTGATGGATATTTA 59.229 33.333 0.00 0.00 0.00 1.40
365 496 2.542205 CGGTGATACGGATCGTTTAGCA 60.542 50.000 2.51 0.00 41.54 3.49
366 497 2.049228 CGGTGATACGGATCGTTTAGC 58.951 52.381 2.51 0.00 41.54 3.09
372 503 2.726989 CGGATTACGGTGATACGGATCG 60.727 54.545 9.48 0.00 39.42 3.69
376 507 0.665369 GGCGGATTACGGTGATACGG 60.665 60.000 17.75 1.96 44.51 4.02
377 508 0.665369 GGGCGGATTACGGTGATACG 60.665 60.000 12.69 12.69 44.51 3.06
386 517 1.340568 GTGGACTAGAGGGCGGATTAC 59.659 57.143 0.00 0.00 0.00 1.89
389 520 0.325296 TTGTGGACTAGAGGGCGGAT 60.325 55.000 0.00 0.00 0.00 4.18
404 535 4.036380 GGGTAGTCCAACAAAACTCTTGTG 59.964 45.833 0.00 0.00 35.00 3.33
406 537 3.568430 GGGGTAGTCCAACAAAACTCTTG 59.432 47.826 0.00 0.00 37.22 3.02
407 538 3.436035 GGGGGTAGTCCAACAAAACTCTT 60.436 47.826 0.00 0.00 37.22 2.85
411 542 1.202794 TCGGGGGTAGTCCAACAAAAC 60.203 52.381 0.00 0.00 37.22 2.43
467 598 6.422776 GAGCGGAGATCAAAACAAGATTTA 57.577 37.500 0.00 0.00 45.47 1.40
487 633 0.039256 TTGAGCGCCATTGTTTGAGC 60.039 50.000 2.29 0.00 0.00 4.26
534 680 4.118995 ATTGCCACCATGCACGCG 62.119 61.111 3.53 3.53 41.88 6.01
537 683 0.390209 GAACCATTGCCACCATGCAC 60.390 55.000 0.00 0.00 41.88 4.57
542 688 0.113972 TCCATGAACCATTGCCACCA 59.886 50.000 0.00 0.00 0.00 4.17
544 690 0.819582 CCTCCATGAACCATTGCCAC 59.180 55.000 0.00 0.00 0.00 5.01
545 691 0.703488 TCCTCCATGAACCATTGCCA 59.297 50.000 0.00 0.00 0.00 4.92
549 695 2.291153 CCACACTCCTCCATGAACCATT 60.291 50.000 0.00 0.00 0.00 3.16
567 713 3.717294 ACGCCACCCATCTCCCAC 61.717 66.667 0.00 0.00 0.00 4.61
640 786 0.888736 CACCACCTGAACCGATGCAA 60.889 55.000 0.00 0.00 0.00 4.08
664 810 2.341176 GCCTGTACCACCGACGTT 59.659 61.111 0.00 0.00 0.00 3.99
714 860 4.366267 ACTGAGAGGGAGGTGATAAATGT 58.634 43.478 0.00 0.00 0.00 2.71
782 928 7.221067 CAGAAGTAGCAACCGACTTTTATCTAG 59.779 40.741 0.00 0.00 37.09 2.43
889 1041 2.986842 TGCGTGCAATTTTCGTTTTG 57.013 40.000 0.00 0.00 0.00 2.44
897 1049 1.067749 TGCTGCTTGCGTGCAATTT 59.932 47.368 7.85 0.00 46.63 1.82
1047 1217 1.075836 GGTGTGGGTATGGGTGCAA 59.924 57.895 0.00 0.00 0.00 4.08
1056 1226 2.840576 GGGTTGCAGGTGTGGGTA 59.159 61.111 0.00 0.00 0.00 3.69
1107 1277 0.178973 TCTTGGAGTGGACGTGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
1377 1550 3.685214 GACGTCGACGAGCAGGCAT 62.685 63.158 41.52 18.88 43.02 4.40
1544 1723 7.627298 AATATTCTCCATTGCATAGATCTGC 57.373 36.000 5.18 2.31 42.62 4.26
1596 1782 1.002624 TTCCATGTCAACCGCCCTC 60.003 57.895 0.00 0.00 0.00 4.30
1599 1785 1.002624 TCCTTCCATGTCAACCGCC 60.003 57.895 0.00 0.00 0.00 6.13
1685 1901 1.084289 GACTAAACCATGTGGGACGC 58.916 55.000 3.77 0.00 41.15 5.19
1709 1925 7.148222 ACACACTCACAGTACATCTACATCTAC 60.148 40.741 0.00 0.00 0.00 2.59
1710 1926 6.884836 ACACACTCACAGTACATCTACATCTA 59.115 38.462 0.00 0.00 0.00 1.98
1711 1927 5.712446 ACACACTCACAGTACATCTACATCT 59.288 40.000 0.00 0.00 0.00 2.90
1712 1928 5.955488 ACACACTCACAGTACATCTACATC 58.045 41.667 0.00 0.00 0.00 3.06
1713 1929 5.984695 ACACACTCACAGTACATCTACAT 57.015 39.130 0.00 0.00 0.00 2.29
1714 1930 6.002082 AGTACACACTCACAGTACATCTACA 58.998 40.000 0.00 0.00 40.32 2.74
1740 1956 3.720002 TGGGGAGTAAAAAGAACCAGAGT 59.280 43.478 0.00 0.00 0.00 3.24
1913 2141 8.826710 GTGTTAGCTGTGTGCATTCTATTTATA 58.173 33.333 0.00 0.00 45.94 0.98
2023 2256 3.453717 TCATGGATCTGACCTCTTTGGAG 59.546 47.826 0.00 0.00 39.71 3.86
2033 2267 2.245159 TTGCCGATCATGGATCTGAC 57.755 50.000 4.86 0.00 36.96 3.51
2066 2300 3.244665 TGAGATGGATGGTGTGGATATGC 60.245 47.826 0.00 0.00 0.00 3.14
2143 2377 4.341806 TGGTGAAAATGATGCTTGAGTGTT 59.658 37.500 0.00 0.00 0.00 3.32
2160 2394 0.404040 GGGTGGTTGGATCTGGTGAA 59.596 55.000 0.00 0.00 0.00 3.18
2179 2414 4.443598 GGTGAAAACCTAGATCCTAGCCTG 60.444 50.000 0.00 0.00 0.00 4.85
2225 2460 1.243342 TGTTCAAGGCATTGCTCGGG 61.243 55.000 6.15 0.00 36.30 5.14
2341 2776 6.013725 ACCACAACTTGATGACTTAGATGGTA 60.014 38.462 0.00 0.00 33.88 3.25
2348 4190 7.619965 TGATGATACCACAACTTGATGACTTA 58.380 34.615 0.00 0.00 0.00 2.24
2376 4218 9.477484 CTGGCTTATAGTCGTAATTGTAATCTT 57.523 33.333 0.00 0.00 0.00 2.40
2405 4247 5.525378 AGCGTCTCCAAGATTTGACATTATC 59.475 40.000 0.00 0.00 0.00 1.75
2411 4253 2.413453 GTCAGCGTCTCCAAGATTTGAC 59.587 50.000 0.00 0.00 30.51 3.18
2464 4306 4.748798 CCCTCCCCTGTCCTGCCT 62.749 72.222 0.00 0.00 0.00 4.75
2482 4324 1.208535 TGACCGCGGGTGAATTTATCT 59.791 47.619 31.76 2.41 35.25 1.98
2483 4325 1.329599 GTGACCGCGGGTGAATTTATC 59.670 52.381 31.76 14.89 35.25 1.75
2484 4326 1.065709 AGTGACCGCGGGTGAATTTAT 60.066 47.619 31.76 3.99 35.25 1.40
2485 4327 0.322322 AGTGACCGCGGGTGAATTTA 59.678 50.000 31.76 0.00 35.25 1.40
2486 4328 1.072505 AGTGACCGCGGGTGAATTT 59.927 52.632 31.76 5.85 35.25 1.82
2487 4329 1.671054 CAGTGACCGCGGGTGAATT 60.671 57.895 31.76 6.78 35.25 2.17
2488 4330 1.537814 TACAGTGACCGCGGGTGAAT 61.538 55.000 31.76 7.71 35.25 2.57
2489 4331 1.537814 ATACAGTGACCGCGGGTGAA 61.538 55.000 31.76 8.82 35.25 3.18
2490 4332 1.537814 AATACAGTGACCGCGGGTGA 61.538 55.000 31.76 9.81 35.25 4.02
2491 4333 0.672401 AAATACAGTGACCGCGGGTG 60.672 55.000 31.76 22.07 35.25 4.61
2492 4334 0.672401 CAAATACAGTGACCGCGGGT 60.672 55.000 31.76 19.47 39.44 5.28
2493 4335 0.390603 TCAAATACAGTGACCGCGGG 60.391 55.000 31.76 13.93 0.00 6.13
2494 4336 1.593006 GATCAAATACAGTGACCGCGG 59.407 52.381 26.86 26.86 0.00 6.46
2495 4337 2.029244 GTGATCAAATACAGTGACCGCG 59.971 50.000 0.00 0.00 0.00 6.46
2496 4338 3.000041 TGTGATCAAATACAGTGACCGC 59.000 45.455 0.00 0.00 0.00 5.68
2497 4339 5.179368 ACTTTGTGATCAAATACAGTGACCG 59.821 40.000 0.00 0.00 41.77 4.79
2498 4340 6.560253 ACTTTGTGATCAAATACAGTGACC 57.440 37.500 0.00 0.00 41.77 4.02
2499 4341 7.587757 GTGAACTTTGTGATCAAATACAGTGAC 59.412 37.037 0.00 0.00 41.77 3.67
2500 4342 7.498900 AGTGAACTTTGTGATCAAATACAGTGA 59.501 33.333 0.00 0.00 41.77 3.41
2501 4343 7.642669 AGTGAACTTTGTGATCAAATACAGTG 58.357 34.615 0.00 0.00 41.77 3.66
2502 4344 7.807977 AGTGAACTTTGTGATCAAATACAGT 57.192 32.000 0.00 0.00 41.77 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.