Multiple sequence alignment - TraesCS7D01G517900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G517900 chr7D 100.000 2608 0 0 1 2608 616591714 616594321 0.000000e+00 4817
1 TraesCS7D01G517900 chr7D 98.567 2512 36 0 1 2512 52435756 52433245 0.000000e+00 4440
2 TraesCS7D01G517900 chr7D 98.448 2513 36 3 1 2512 534738285 534735775 0.000000e+00 4421
3 TraesCS7D01G517900 chr3D 98.806 2512 29 1 1 2512 84530778 84533288 0.000000e+00 4471
4 TraesCS7D01G517900 chr3D 98.567 2512 35 1 1 2512 54664377 54661867 0.000000e+00 4438
5 TraesCS7D01G517900 chr3D 98.448 2513 38 1 1 2512 546357509 546354997 0.000000e+00 4423
6 TraesCS7D01G517900 chr5D 98.607 2512 35 0 1 2512 346023484 346025995 0.000000e+00 4446
7 TraesCS7D01G517900 chr2D 98.567 2512 35 1 1 2512 559267718 559270228 0.000000e+00 4438
8 TraesCS7D01G517900 chrUn 98.487 2512 36 2 1 2512 27645314 27642805 0.000000e+00 4427
9 TraesCS7D01G517900 chrUn 99.038 104 1 0 2505 2608 24564373 24564270 1.230000e-43 187
10 TraesCS7D01G517900 chr6D 98.447 2512 36 2 1 2512 62913891 62916399 0.000000e+00 4420
11 TraesCS7D01G517900 chr6D 99.038 104 1 0 2505 2608 91155422 91155319 1.230000e-43 187
12 TraesCS7D01G517900 chr6D 99.038 104 1 0 2505 2608 395493297 395493400 1.230000e-43 187
13 TraesCS7D01G517900 chr4D 99.038 104 1 0 2505 2608 338464440 338464543 1.230000e-43 187
14 TraesCS7D01G517900 chr4D 99.038 104 1 0 2505 2608 436829386 436829489 1.230000e-43 187
15 TraesCS7D01G517900 chr4D 99.038 104 1 0 2505 2608 460978039 460978142 1.230000e-43 187
16 TraesCS7D01G517900 chr4D 99.038 104 1 0 2505 2608 461407488 461407385 1.230000e-43 187
17 TraesCS7D01G517900 chr1D 99.038 104 1 0 2505 2608 2186752 2186855 1.230000e-43 187
18 TraesCS7D01G517900 chr1D 99.038 104 1 0 2505 2608 303043266 303043163 1.230000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G517900 chr7D 616591714 616594321 2607 False 4817 4817 100.000 1 2608 1 chr7D.!!$F1 2607
1 TraesCS7D01G517900 chr7D 52433245 52435756 2511 True 4440 4440 98.567 1 2512 1 chr7D.!!$R1 2511
2 TraesCS7D01G517900 chr7D 534735775 534738285 2510 True 4421 4421 98.448 1 2512 1 chr7D.!!$R2 2511
3 TraesCS7D01G517900 chr3D 84530778 84533288 2510 False 4471 4471 98.806 1 2512 1 chr3D.!!$F1 2511
4 TraesCS7D01G517900 chr3D 54661867 54664377 2510 True 4438 4438 98.567 1 2512 1 chr3D.!!$R1 2511
5 TraesCS7D01G517900 chr3D 546354997 546357509 2512 True 4423 4423 98.448 1 2512 1 chr3D.!!$R2 2511
6 TraesCS7D01G517900 chr5D 346023484 346025995 2511 False 4446 4446 98.607 1 2512 1 chr5D.!!$F1 2511
7 TraesCS7D01G517900 chr2D 559267718 559270228 2510 False 4438 4438 98.567 1 2512 1 chr2D.!!$F1 2511
8 TraesCS7D01G517900 chrUn 27642805 27645314 2509 True 4427 4427 98.487 1 2512 1 chrUn.!!$R2 2511
9 TraesCS7D01G517900 chr6D 62913891 62916399 2508 False 4420 4420 98.447 1 2512 1 chr6D.!!$F1 2511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 1.473677 TCGTCGCCGGAGAAGAATAAA 59.526 47.619 20.38 0.0 33.95 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 1623 1.293498 GAGTGGATGGCGACTGTGT 59.707 57.895 0.0 0.0 32.87 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 5.437289 TCATAGCAAAAAGACACAACAGG 57.563 39.130 0.00 0.00 0.00 4.00
327 328 2.360844 GACATCTCTCGTCTCTCACCA 58.639 52.381 0.00 0.00 0.00 4.17
368 369 1.473677 TCGTCGCCGGAGAAGAATAAA 59.526 47.619 20.38 0.00 33.95 1.40
591 592 8.065627 TCACGGATATATACCTTCCCATTCTAT 58.934 37.037 0.00 0.00 0.00 1.98
614 615 4.836175 TCGCATATCAACCCTATCCTAACA 59.164 41.667 0.00 0.00 0.00 2.41
1163 1164 1.069358 GATAAAGGAGGAGCGTGAGGG 59.931 57.143 0.00 0.00 0.00 4.30
1621 1623 2.034878 AGGCTAAGCATCATGAGACGA 58.965 47.619 0.09 0.00 0.00 4.20
2506 2512 0.973632 TTGCTAGAGAGTTGGCGGAA 59.026 50.000 0.00 0.00 0.00 4.30
2512 2518 3.425162 AGAGAGTTGGCGGAAAAAGAT 57.575 42.857 0.00 0.00 0.00 2.40
2513 2519 3.756117 AGAGAGTTGGCGGAAAAAGATT 58.244 40.909 0.00 0.00 0.00 2.40
2514 2520 3.503748 AGAGAGTTGGCGGAAAAAGATTG 59.496 43.478 0.00 0.00 0.00 2.67
2515 2521 3.486383 AGAGTTGGCGGAAAAAGATTGA 58.514 40.909 0.00 0.00 0.00 2.57
2516 2522 3.888930 AGAGTTGGCGGAAAAAGATTGAA 59.111 39.130 0.00 0.00 0.00 2.69
2517 2523 4.022849 AGAGTTGGCGGAAAAAGATTGAAG 60.023 41.667 0.00 0.00 0.00 3.02
2518 2524 2.723124 TGGCGGAAAAAGATTGAAGC 57.277 45.000 0.00 0.00 0.00 3.86
2519 2525 1.959985 TGGCGGAAAAAGATTGAAGCA 59.040 42.857 0.00 0.00 0.00 3.91
2520 2526 2.288152 TGGCGGAAAAAGATTGAAGCAC 60.288 45.455 0.00 0.00 0.00 4.40
2521 2527 2.288152 GGCGGAAAAAGATTGAAGCACA 60.288 45.455 0.00 0.00 0.00 4.57
2522 2528 3.578688 GCGGAAAAAGATTGAAGCACAT 58.421 40.909 0.00 0.00 0.00 3.21
2523 2529 3.365820 GCGGAAAAAGATTGAAGCACATG 59.634 43.478 0.00 0.00 0.00 3.21
2524 2530 3.922240 CGGAAAAAGATTGAAGCACATGG 59.078 43.478 0.00 0.00 0.00 3.66
2525 2531 4.248058 GGAAAAAGATTGAAGCACATGGG 58.752 43.478 0.00 0.00 0.00 4.00
2526 2532 4.262592 GGAAAAAGATTGAAGCACATGGGT 60.263 41.667 0.00 0.00 0.00 4.51
2527 2533 4.525912 AAAAGATTGAAGCACATGGGTC 57.474 40.909 0.00 0.00 0.00 4.46
2528 2534 1.742761 AGATTGAAGCACATGGGTCG 58.257 50.000 0.00 0.00 0.00 4.79
2529 2535 1.003580 AGATTGAAGCACATGGGTCGT 59.996 47.619 0.00 0.00 0.00 4.34
2530 2536 1.398390 GATTGAAGCACATGGGTCGTC 59.602 52.381 0.00 0.00 0.00 4.20
2531 2537 0.948623 TTGAAGCACATGGGTCGTCG 60.949 55.000 0.00 0.00 0.00 5.12
2532 2538 2.740714 GAAGCACATGGGTCGTCGC 61.741 63.158 0.00 0.00 0.00 5.19
2533 2539 4.760047 AGCACATGGGTCGTCGCC 62.760 66.667 0.00 0.00 0.00 5.54
2535 2541 2.358125 CACATGGGTCGTCGCCAA 60.358 61.111 0.00 0.00 0.00 4.52
2536 2542 2.047274 ACATGGGTCGTCGCCAAG 60.047 61.111 0.00 1.20 0.00 3.61
2537 2543 3.499737 CATGGGTCGTCGCCAAGC 61.500 66.667 7.78 0.00 0.00 4.01
2538 2544 4.778143 ATGGGTCGTCGCCAAGCC 62.778 66.667 7.78 1.50 0.00 4.35
2548 2554 4.179579 GCCAAGCCCGACGCAATC 62.180 66.667 0.00 0.00 41.38 2.67
2549 2555 2.436646 CCAAGCCCGACGCAATCT 60.437 61.111 0.00 0.00 41.38 2.40
2550 2556 2.464459 CCAAGCCCGACGCAATCTC 61.464 63.158 0.00 0.00 41.38 2.75
2551 2557 2.125106 AAGCCCGACGCAATCTCC 60.125 61.111 0.00 0.00 41.38 3.71
2552 2558 2.954684 AAGCCCGACGCAATCTCCA 61.955 57.895 0.00 0.00 41.38 3.86
2553 2559 2.435938 GCCCGACGCAATCTCCAA 60.436 61.111 0.00 0.00 37.47 3.53
2554 2560 2.750888 GCCCGACGCAATCTCCAAC 61.751 63.158 0.00 0.00 37.47 3.77
2555 2561 2.452813 CCCGACGCAATCTCCAACG 61.453 63.158 0.00 0.00 0.00 4.10
2556 2562 1.736645 CCGACGCAATCTCCAACGT 60.737 57.895 0.00 0.00 42.27 3.99
2558 2564 1.702299 GACGCAATCTCCAACGTCG 59.298 57.895 0.00 0.00 44.42 5.12
2559 2565 2.279937 GACGCAATCTCCAACGTCGC 62.280 60.000 0.00 0.00 44.42 5.19
2560 2566 2.379634 CGCAATCTCCAACGTCGCA 61.380 57.895 0.00 0.00 0.00 5.10
2561 2567 1.866237 GCAATCTCCAACGTCGCAA 59.134 52.632 0.00 0.00 0.00 4.85
2562 2568 0.452784 GCAATCTCCAACGTCGCAAC 60.453 55.000 0.00 0.00 0.00 4.17
2571 2577 3.036084 CGTCGCAACGCAAGAGGT 61.036 61.111 0.00 0.00 42.82 3.85
2572 2578 2.853914 GTCGCAACGCAAGAGGTC 59.146 61.111 0.00 0.00 43.62 3.85
2573 2579 1.954146 GTCGCAACGCAAGAGGTCA 60.954 57.895 0.00 0.00 43.62 4.02
2574 2580 1.954146 TCGCAACGCAAGAGGTCAC 60.954 57.895 0.00 0.00 43.62 3.67
2575 2581 1.956170 CGCAACGCAAGAGGTCACT 60.956 57.895 0.00 0.00 43.62 3.41
2576 2582 1.571460 GCAACGCAAGAGGTCACTG 59.429 57.895 0.00 0.00 43.62 3.66
2577 2583 1.845809 GCAACGCAAGAGGTCACTGG 61.846 60.000 0.00 0.00 43.62 4.00
2578 2584 0.249868 CAACGCAAGAGGTCACTGGA 60.250 55.000 0.00 0.00 43.62 3.86
2579 2585 0.687354 AACGCAAGAGGTCACTGGAT 59.313 50.000 0.00 0.00 43.62 3.41
2580 2586 0.687354 ACGCAAGAGGTCACTGGATT 59.313 50.000 0.00 0.00 43.62 3.01
2581 2587 1.072331 ACGCAAGAGGTCACTGGATTT 59.928 47.619 0.00 0.00 43.62 2.17
2582 2588 2.154462 CGCAAGAGGTCACTGGATTTT 58.846 47.619 0.00 0.00 43.02 1.82
2583 2589 2.095567 CGCAAGAGGTCACTGGATTTTG 60.096 50.000 0.00 0.00 43.02 2.44
2584 2590 2.229784 GCAAGAGGTCACTGGATTTTGG 59.770 50.000 0.00 0.00 0.00 3.28
2585 2591 3.754965 CAAGAGGTCACTGGATTTTGGA 58.245 45.455 0.00 0.00 0.00 3.53
2586 2592 4.144297 CAAGAGGTCACTGGATTTTGGAA 58.856 43.478 0.00 0.00 0.00 3.53
2587 2593 4.026356 AGAGGTCACTGGATTTTGGAAG 57.974 45.455 0.00 0.00 0.00 3.46
2588 2594 3.395941 AGAGGTCACTGGATTTTGGAAGT 59.604 43.478 0.00 0.00 0.00 3.01
2589 2595 3.490348 AGGTCACTGGATTTTGGAAGTG 58.510 45.455 0.00 0.00 41.11 3.16
2590 2596 2.029918 GGTCACTGGATTTTGGAAGTGC 60.030 50.000 0.00 0.00 39.88 4.40
2591 2597 2.622942 GTCACTGGATTTTGGAAGTGCA 59.377 45.455 0.00 0.00 39.88 4.57
2592 2598 2.886523 TCACTGGATTTTGGAAGTGCAG 59.113 45.455 0.00 3.78 39.88 4.41
2593 2599 2.886523 CACTGGATTTTGGAAGTGCAGA 59.113 45.455 10.67 0.00 35.58 4.26
2594 2600 3.318839 CACTGGATTTTGGAAGTGCAGAA 59.681 43.478 10.67 0.00 35.58 3.02
2595 2601 3.571401 ACTGGATTTTGGAAGTGCAGAAG 59.429 43.478 10.67 0.00 35.58 2.85
2596 2602 3.822735 CTGGATTTTGGAAGTGCAGAAGA 59.177 43.478 0.00 0.00 33.75 2.87
2597 2603 3.569701 TGGATTTTGGAAGTGCAGAAGAC 59.430 43.478 0.00 0.00 0.00 3.01
2598 2604 3.057245 GGATTTTGGAAGTGCAGAAGACC 60.057 47.826 0.00 0.00 0.00 3.85
2599 2605 2.727123 TTTGGAAGTGCAGAAGACCA 57.273 45.000 0.00 0.00 0.00 4.02
2600 2606 2.957402 TTGGAAGTGCAGAAGACCAT 57.043 45.000 0.00 0.00 0.00 3.55
2601 2607 4.365514 TTTGGAAGTGCAGAAGACCATA 57.634 40.909 0.00 0.00 0.00 2.74
2602 2608 4.574674 TTGGAAGTGCAGAAGACCATAT 57.425 40.909 0.00 0.00 0.00 1.78
2603 2609 3.877559 TGGAAGTGCAGAAGACCATATG 58.122 45.455 0.00 0.00 0.00 1.78
2604 2610 3.209410 GGAAGTGCAGAAGACCATATGG 58.791 50.000 20.68 20.68 42.17 2.74
2605 2611 3.118261 GGAAGTGCAGAAGACCATATGGA 60.118 47.826 28.77 0.00 38.94 3.41
2606 2612 3.834489 AGTGCAGAAGACCATATGGAG 57.166 47.619 28.77 10.89 38.94 3.86
2607 2613 3.110705 AGTGCAGAAGACCATATGGAGT 58.889 45.455 28.77 11.59 38.94 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 3.813724 GCGGGGAAGGTTAAATCTATGTC 59.186 47.826 0.00 0.00 0.00 3.06
159 160 0.894835 ATGGGCGGGAATTTGTGAAC 59.105 50.000 0.00 0.00 0.00 3.18
368 369 0.104725 TCCCTTGCCCCACCAAATTT 60.105 50.000 0.00 0.00 0.00 1.82
591 592 4.836175 TGTTAGGATAGGGTTGATATGCGA 59.164 41.667 0.00 0.00 0.00 5.10
614 615 2.993863 AGAAACAAGGTAGATGGGGGTT 59.006 45.455 0.00 0.00 0.00 4.11
1068 1069 3.011566 TCCTTTTGCACCTTCAAGTCA 57.988 42.857 0.00 0.00 0.00 3.41
1163 1164 0.730840 CGCCATCTTACGGGAAAACC 59.269 55.000 0.00 0.00 0.00 3.27
1621 1623 1.293498 GAGTGGATGGCGACTGTGT 59.707 57.895 0.00 0.00 32.87 3.72
2119 2123 2.265904 GGTCACTTTGGCGGGTTCC 61.266 63.158 0.00 0.00 0.00 3.62
2350 2356 3.244491 CCTCTGGATCAATGTCATCCTCC 60.244 52.174 0.00 0.00 40.66 4.30
2506 2512 3.057315 CGACCCATGTGCTTCAATCTTTT 60.057 43.478 0.00 0.00 0.00 2.27
2512 2518 0.948623 CGACGACCCATGTGCTTCAA 60.949 55.000 0.00 0.00 0.00 2.69
2513 2519 1.374125 CGACGACCCATGTGCTTCA 60.374 57.895 0.00 0.00 0.00 3.02
2514 2520 2.740714 GCGACGACCCATGTGCTTC 61.741 63.158 0.00 0.00 0.00 3.86
2515 2521 2.742372 GCGACGACCCATGTGCTT 60.742 61.111 0.00 0.00 0.00 3.91
2516 2522 4.760047 GGCGACGACCCATGTGCT 62.760 66.667 0.00 0.00 0.00 4.40
2518 2524 2.358125 TTGGCGACGACCCATGTG 60.358 61.111 0.00 0.00 31.26 3.21
2519 2525 2.047274 CTTGGCGACGACCCATGT 60.047 61.111 0.00 0.00 31.26 3.21
2520 2526 3.499737 GCTTGGCGACGACCCATG 61.500 66.667 0.00 0.55 31.26 3.66
2521 2527 4.778143 GGCTTGGCGACGACCCAT 62.778 66.667 0.00 0.00 31.26 4.00
2531 2537 4.179579 GATTGCGTCGGGCTTGGC 62.180 66.667 0.00 0.00 44.05 4.52
2532 2538 2.436646 AGATTGCGTCGGGCTTGG 60.437 61.111 0.00 0.00 44.05 3.61
2533 2539 2.464459 GGAGATTGCGTCGGGCTTG 61.464 63.158 0.00 0.00 44.05 4.01
2534 2540 2.125106 GGAGATTGCGTCGGGCTT 60.125 61.111 0.00 0.00 44.05 4.35
2535 2541 2.954684 TTGGAGATTGCGTCGGGCT 61.955 57.895 0.00 0.00 44.05 5.19
2536 2542 2.435938 TTGGAGATTGCGTCGGGC 60.436 61.111 0.00 0.00 43.96 6.13
2537 2543 2.452813 CGTTGGAGATTGCGTCGGG 61.453 63.158 0.00 0.00 0.00 5.14
2538 2544 1.683790 GACGTTGGAGATTGCGTCGG 61.684 60.000 0.00 0.00 42.91 4.79
2539 2545 1.702299 GACGTTGGAGATTGCGTCG 59.298 57.895 0.00 0.00 42.91 5.12
2540 2546 1.702299 CGACGTTGGAGATTGCGTC 59.298 57.895 5.95 5.95 46.78 5.19
2541 2547 2.380410 GCGACGTTGGAGATTGCGT 61.380 57.895 4.64 0.00 40.44 5.24
2542 2548 1.896339 TTGCGACGTTGGAGATTGCG 61.896 55.000 4.64 0.00 0.00 4.85
2543 2549 0.452784 GTTGCGACGTTGGAGATTGC 60.453 55.000 4.64 0.00 0.00 3.56
2544 2550 0.179250 CGTTGCGACGTTGGAGATTG 60.179 55.000 18.62 0.00 44.08 2.67
2545 2551 2.150424 CGTTGCGACGTTGGAGATT 58.850 52.632 18.62 0.00 44.08 2.40
2546 2552 3.856508 CGTTGCGACGTTGGAGAT 58.143 55.556 18.62 0.00 44.08 2.75
2555 2561 1.954146 TGACCTCTTGCGTTGCGAC 60.954 57.895 0.00 0.00 0.00 5.19
2556 2562 1.954146 GTGACCTCTTGCGTTGCGA 60.954 57.895 0.00 0.00 0.00 5.10
2557 2563 1.956170 AGTGACCTCTTGCGTTGCG 60.956 57.895 0.00 0.00 0.00 4.85
2558 2564 1.571460 CAGTGACCTCTTGCGTTGC 59.429 57.895 0.00 0.00 0.00 4.17
2559 2565 0.249868 TCCAGTGACCTCTTGCGTTG 60.250 55.000 0.00 0.00 0.00 4.10
2560 2566 0.687354 ATCCAGTGACCTCTTGCGTT 59.313 50.000 0.00 0.00 0.00 4.84
2561 2567 0.687354 AATCCAGTGACCTCTTGCGT 59.313 50.000 0.00 0.00 0.00 5.24
2562 2568 1.813513 AAATCCAGTGACCTCTTGCG 58.186 50.000 0.00 0.00 0.00 4.85
2563 2569 2.229784 CCAAAATCCAGTGACCTCTTGC 59.770 50.000 0.00 0.00 0.00 4.01
2564 2570 3.754965 TCCAAAATCCAGTGACCTCTTG 58.245 45.455 0.00 0.00 0.00 3.02
2565 2571 4.141158 ACTTCCAAAATCCAGTGACCTCTT 60.141 41.667 0.00 0.00 0.00 2.85
2566 2572 3.395941 ACTTCCAAAATCCAGTGACCTCT 59.604 43.478 0.00 0.00 0.00 3.69
2567 2573 3.503748 CACTTCCAAAATCCAGTGACCTC 59.496 47.826 0.00 0.00 39.25 3.85
2568 2574 3.490348 CACTTCCAAAATCCAGTGACCT 58.510 45.455 0.00 0.00 39.25 3.85
2569 2575 2.029918 GCACTTCCAAAATCCAGTGACC 60.030 50.000 2.34 0.00 39.25 4.02
2570 2576 2.622942 TGCACTTCCAAAATCCAGTGAC 59.377 45.455 2.34 0.00 39.25 3.67
2571 2577 2.886523 CTGCACTTCCAAAATCCAGTGA 59.113 45.455 2.34 0.00 39.25 3.41
2572 2578 2.886523 TCTGCACTTCCAAAATCCAGTG 59.113 45.455 0.00 0.00 39.79 3.66
2573 2579 3.228188 TCTGCACTTCCAAAATCCAGT 57.772 42.857 0.00 0.00 0.00 4.00
2574 2580 3.822735 TCTTCTGCACTTCCAAAATCCAG 59.177 43.478 0.00 0.00 0.00 3.86
2575 2581 3.569701 GTCTTCTGCACTTCCAAAATCCA 59.430 43.478 0.00 0.00 0.00 3.41
2576 2582 3.057245 GGTCTTCTGCACTTCCAAAATCC 60.057 47.826 0.00 0.00 0.00 3.01
2577 2583 3.569701 TGGTCTTCTGCACTTCCAAAATC 59.430 43.478 0.00 0.00 0.00 2.17
2578 2584 3.565307 TGGTCTTCTGCACTTCCAAAAT 58.435 40.909 0.00 0.00 0.00 1.82
2579 2585 3.011566 TGGTCTTCTGCACTTCCAAAA 57.988 42.857 0.00 0.00 0.00 2.44
2580 2586 2.727123 TGGTCTTCTGCACTTCCAAA 57.273 45.000 0.00 0.00 0.00 3.28
2581 2587 2.957402 ATGGTCTTCTGCACTTCCAA 57.043 45.000 0.00 0.00 0.00 3.53
2582 2588 3.370846 CCATATGGTCTTCTGCACTTCCA 60.371 47.826 14.09 0.00 0.00 3.53
2583 2589 3.118261 TCCATATGGTCTTCTGCACTTCC 60.118 47.826 21.28 0.00 36.34 3.46
2584 2590 4.125703 CTCCATATGGTCTTCTGCACTTC 58.874 47.826 21.28 0.00 36.34 3.01
2585 2591 3.521126 ACTCCATATGGTCTTCTGCACTT 59.479 43.478 21.28 0.00 36.34 3.16
2586 2592 3.110705 ACTCCATATGGTCTTCTGCACT 58.889 45.455 21.28 0.00 36.34 4.40
2587 2593 3.550437 ACTCCATATGGTCTTCTGCAC 57.450 47.619 21.28 0.00 36.34 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.