Multiple sequence alignment - TraesCS7D01G517800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G517800 chr7D 100.000 6981 0 0 1 6981 616511524 616504544 0.000000e+00 12892.0
1 TraesCS7D01G517800 chr7D 96.392 693 21 3 1 691 616521803 616521113 0.000000e+00 1138.0
2 TraesCS7D01G517800 chr7D 85.542 83 9 2 372 453 227573988 227574068 4.490000e-12 84.2
3 TraesCS7D01G517800 chr7B 92.324 5771 279 83 579 6225 709614060 709608330 0.000000e+00 8052.0
4 TraesCS7D01G517800 chr7B 89.130 230 17 4 585 810 709744669 709744444 5.330000e-71 279.0
5 TraesCS7D01G517800 chr7B 77.354 393 50 23 6544 6917 709608095 709607723 5.520000e-46 196.0
6 TraesCS7D01G517800 chr7B 75.949 237 47 9 155 387 125364044 125363814 5.720000e-21 113.0
7 TraesCS7D01G517800 chr7A 91.678 5864 315 83 579 6320 709410488 709404676 0.000000e+00 7965.0
8 TraesCS7D01G517800 chr7A 87.984 258 16 10 561 810 709542428 709542178 2.460000e-74 291.0
9 TraesCS7D01G517800 chr7A 85.926 135 10 4 6783 6917 709392811 709392686 1.220000e-27 135.0
10 TraesCS7D01G517800 chr3A 78.378 296 54 6 171 465 572347815 572347529 4.300000e-42 183.0
11 TraesCS7D01G517800 chr3A 77.517 298 48 10 164 455 203957357 203957641 2.020000e-35 161.0
12 TraesCS7D01G517800 chr3D 76.730 318 65 5 150 465 325515653 325515963 1.200000e-37 169.0
13 TraesCS7D01G517800 chr2D 75.238 315 69 5 153 465 484366745 484366438 2.630000e-29 141.0
14 TraesCS7D01G517800 chr6B 77.404 208 42 4 179 384 66742650 66742854 1.230000e-22 119.0
15 TraesCS7D01G517800 chr1A 76.068 234 47 7 154 384 577888500 577888727 5.720000e-21 113.0
16 TraesCS7D01G517800 chr1A 74.035 285 57 13 154 433 589568958 589568686 4.460000e-17 100.0
17 TraesCS7D01G517800 chr2B 86.585 82 10 1 384 465 496948947 496948867 9.640000e-14 89.8
18 TraesCS7D01G517800 chr5D 83.000 100 12 4 366 465 519629089 519629183 1.250000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G517800 chr7D 616504544 616511524 6980 True 12892 12892 100.000 1 6981 1 chr7D.!!$R1 6980
1 TraesCS7D01G517800 chr7D 616521113 616521803 690 True 1138 1138 96.392 1 691 1 chr7D.!!$R2 690
2 TraesCS7D01G517800 chr7B 709607723 709614060 6337 True 4124 8052 84.839 579 6917 2 chr7B.!!$R3 6338
3 TraesCS7D01G517800 chr7A 709404676 709410488 5812 True 7965 7965 91.678 579 6320 1 chr7A.!!$R2 5741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 312 0.638746 GACGTTTGCATCGACTACGG 59.361 55.0 16.52 0.00 40.21 4.02 F
1193 1208 0.321122 CTGCCCCTCAACAGTCTGTC 60.321 60.0 5.82 0.00 0.00 3.51 F
1214 1233 0.035056 CCGCCACCTCCTGATTTTCT 60.035 55.0 0.00 0.00 0.00 2.52 F
1267 1286 0.037326 TGGTGGCTCGTGATCTGTTC 60.037 55.0 0.00 0.00 0.00 3.18 F
1330 1349 0.175760 TATCAGTTCCACAGCTCGCC 59.824 55.0 0.00 0.00 0.00 5.54 F
1379 1400 0.461870 TCTGATGGTTGAATCCCGCG 60.462 55.0 0.00 0.00 0.00 6.46 F
1526 1548 0.538584 ATCTCGCATCTGGTTGCTGA 59.461 50.0 2.81 1.98 40.54 4.26 F
2931 2979 0.606401 AAGACACTGACCAATGCCCG 60.606 55.0 0.00 0.00 0.00 6.13 F
3559 3671 0.179097 TGTGCGTGCAGTCACTAACA 60.179 50.0 16.36 0.30 40.99 2.41 F
5167 5318 0.612732 TAGGCTTGGCATTTGCAGCT 60.613 50.0 12.76 0.00 44.36 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1210 0.035056 AGAAAATCAGGAGGTGGCGG 60.035 55.000 0.0 0.0 0.00 6.13 R
2008 2044 0.447801 CAGCGTTGGTCAGGCATTAC 59.552 55.000 0.0 0.0 38.87 1.89 R
2482 2530 0.745845 AATCTGCATGAGGACACGGC 60.746 55.000 0.0 0.0 0.00 5.68 R
2947 2995 1.152756 AAAAGGACAAGGCAGCGGT 60.153 52.632 0.0 0.0 0.00 5.68 R
3077 3125 3.403038 GGGTTCATTCCATGTATCCTCG 58.597 50.000 0.0 0.0 0.00 4.63 R
3373 3480 3.967987 AGTACTTCTTCACCAAGTCCTGT 59.032 43.478 0.0 0.0 35.63 4.00 R
3559 3671 8.532186 TGTGGCTACAAAATAATGGATAATGT 57.468 30.769 0.0 0.0 32.88 2.71 R
3952 4064 0.465705 GATCATGTGGAGCCTTCGGA 59.534 55.000 0.0 0.0 0.00 4.55 R
5331 5483 0.603707 TGAGCTTTGAGTCCTTGCCG 60.604 55.000 0.0 0.0 0.00 5.69 R
6395 6577 0.031178 GCAGCACAAACTCCCAAGTG 59.969 55.000 0.0 0.0 35.36 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 86 2.927477 CAATAGCCAAGCAGTTGCAATG 59.073 45.455 0.59 3.42 45.16 2.82
152 155 4.403453 GCAATTCGACGCTTAATTTGAGT 58.597 39.130 0.00 0.00 0.00 3.41
174 177 6.484288 AGTCAATCTGTGATTGGATGGTTAA 58.516 36.000 16.98 0.00 38.90 2.01
180 183 4.250464 TGTGATTGGATGGTTAAGACGAC 58.750 43.478 0.00 0.00 0.00 4.34
194 197 6.693545 GGTTAAGACGACAGTGATATTCTCAG 59.306 42.308 0.00 0.00 33.51 3.35
202 205 6.143598 CGACAGTGATATTCTCAGCACATAAG 59.856 42.308 0.00 0.00 33.51 1.73
230 233 5.552870 AGTCTTAGACTTGACATTGGTGT 57.447 39.130 9.37 0.00 40.28 4.16
243 246 4.050553 ACATTGGTGTTCGCATTTTTCTG 58.949 39.130 0.00 0.00 34.01 3.02
246 249 4.582701 TGGTGTTCGCATTTTTCTGAAT 57.417 36.364 0.00 0.00 0.00 2.57
247 250 4.942852 TGGTGTTCGCATTTTTCTGAATT 58.057 34.783 0.00 0.00 0.00 2.17
248 251 5.355596 TGGTGTTCGCATTTTTCTGAATTT 58.644 33.333 0.00 0.00 0.00 1.82
281 284 5.473162 CCTTCCGGTGATATTATGCATTCAA 59.527 40.000 3.54 0.00 0.00 2.69
309 312 0.638746 GACGTTTGCATCGACTACGG 59.361 55.000 16.52 0.00 40.21 4.02
317 320 1.859080 GCATCGACTACGGAAACATCC 59.141 52.381 0.00 0.00 40.21 3.51
369 372 1.836166 CCAGCTCAATCTCTTGGAGGA 59.164 52.381 0.00 0.00 32.95 3.71
403 406 1.947146 GTGTGTCTACGTGCGTGCA 60.947 57.895 7.55 0.00 0.00 4.57
435 438 7.607250 TGGATGAATGTATGTGCGTATGTATA 58.393 34.615 0.00 0.00 0.00 1.47
466 469 5.640357 TGCGTTTGTACTATGGTTAGAAAGG 59.360 40.000 0.00 0.00 0.00 3.11
707 714 5.844004 ACGAATTATATCCACTCCACTGAC 58.156 41.667 0.00 0.00 0.00 3.51
760 767 3.729906 GACGTCGACGACCCATCCG 62.730 68.421 41.52 14.73 43.02 4.18
773 780 1.825191 CATCCGGCACCAATCCCAG 60.825 63.158 0.00 0.00 0.00 4.45
797 805 1.318576 CCACCTGTCAAACCCTTCAC 58.681 55.000 0.00 0.00 0.00 3.18
798 806 0.944386 CACCTGTCAAACCCTTCACG 59.056 55.000 0.00 0.00 0.00 4.35
801 809 1.474320 CCTGTCAAACCCTTCACGACA 60.474 52.381 0.00 0.00 35.44 4.35
840 849 4.292178 GATCCTCCAGCTCGCCCG 62.292 72.222 0.00 0.00 0.00 6.13
1037 1049 2.126031 GCCCCGAGTCAGACGAAC 60.126 66.667 0.00 0.00 0.00 3.95
1167 1182 3.424105 GATCCAGGCAAGCCCCCT 61.424 66.667 7.62 0.00 36.58 4.79
1168 1183 3.424105 ATCCAGGCAAGCCCCCTC 61.424 66.667 7.62 0.00 36.58 4.30
1170 1185 3.983420 CCAGGCAAGCCCCCTCAA 61.983 66.667 7.62 0.00 36.58 3.02
1171 1186 2.361771 CAGGCAAGCCCCCTCAAT 59.638 61.111 7.62 0.00 36.58 2.57
1174 1189 2.442830 GCAAGCCCCCTCAATCCC 60.443 66.667 0.00 0.00 0.00 3.85
1175 1190 3.001358 GCAAGCCCCCTCAATCCCT 62.001 63.158 0.00 0.00 0.00 4.20
1176 1191 1.076485 CAAGCCCCCTCAATCCCTG 60.076 63.158 0.00 0.00 0.00 4.45
1178 1193 4.529731 GCCCCCTCAATCCCTGCC 62.530 72.222 0.00 0.00 0.00 4.85
1180 1195 3.825623 CCCCTCAATCCCTGCCCC 61.826 72.222 0.00 0.00 0.00 5.80
1181 1196 2.697644 CCCTCAATCCCTGCCCCT 60.698 66.667 0.00 0.00 0.00 4.79
1183 1198 2.002977 CCTCAATCCCTGCCCCTCA 61.003 63.158 0.00 0.00 0.00 3.86
1184 1199 1.574526 CCTCAATCCCTGCCCCTCAA 61.575 60.000 0.00 0.00 0.00 3.02
1186 1201 1.139498 TCAATCCCTGCCCCTCAACA 61.139 55.000 0.00 0.00 0.00 3.33
1187 1202 0.682209 CAATCCCTGCCCCTCAACAG 60.682 60.000 0.00 0.00 0.00 3.16
1188 1203 1.142688 AATCCCTGCCCCTCAACAGT 61.143 55.000 0.00 0.00 31.76 3.55
1189 1204 1.566298 ATCCCTGCCCCTCAACAGTC 61.566 60.000 0.00 0.00 31.76 3.51
1190 1205 2.227036 CCCTGCCCCTCAACAGTCT 61.227 63.158 0.00 0.00 31.76 3.24
1191 1206 1.002868 CCTGCCCCTCAACAGTCTG 60.003 63.158 0.00 0.00 31.76 3.51
1192 1207 1.757306 CTGCCCCTCAACAGTCTGT 59.243 57.895 0.00 0.00 0.00 3.41
1193 1208 0.321122 CTGCCCCTCAACAGTCTGTC 60.321 60.000 5.82 0.00 0.00 3.51
1194 1209 1.374758 GCCCCTCAACAGTCTGTCG 60.375 63.158 5.82 0.00 0.00 4.35
1195 1210 1.374758 CCCCTCAACAGTCTGTCGC 60.375 63.158 5.82 0.00 0.00 5.19
1197 1212 1.734477 CCTCAACAGTCTGTCGCCG 60.734 63.158 5.82 0.00 0.00 6.46
1199 1214 3.414700 CAACAGTCTGTCGCCGCC 61.415 66.667 5.82 0.00 0.00 6.13
1200 1215 3.923864 AACAGTCTGTCGCCGCCA 61.924 61.111 5.82 0.00 0.00 5.69
1201 1216 4.664677 ACAGTCTGTCGCCGCCAC 62.665 66.667 0.00 0.00 0.00 5.01
1213 1232 1.657751 GCCGCCACCTCCTGATTTTC 61.658 60.000 0.00 0.00 0.00 2.29
1214 1233 0.035056 CCGCCACCTCCTGATTTTCT 60.035 55.000 0.00 0.00 0.00 2.52
1215 1234 1.373570 CGCCACCTCCTGATTTTCTC 58.626 55.000 0.00 0.00 0.00 2.87
1224 1243 5.045869 ACCTCCTGATTTTCTCGGTGATTTA 60.046 40.000 0.00 0.00 0.00 1.40
1231 1250 1.116308 TCTCGGTGATTTATGCGGGA 58.884 50.000 0.00 0.00 0.00 5.14
1237 1256 2.594592 ATTTATGCGGGAGGGCGC 60.595 61.111 0.00 0.00 35.06 6.53
1252 1271 1.427819 GCGCCGAATTTAGGTGGTG 59.572 57.895 10.55 4.42 39.52 4.17
1267 1286 0.037326 TGGTGGCTCGTGATCTGTTC 60.037 55.000 0.00 0.00 0.00 3.18
1303 1322 0.912487 TCGTAGATTTGGCCCCAGGT 60.912 55.000 0.00 0.00 0.00 4.00
1326 1345 3.118592 GGTAGCTTATCAGTTCCACAGCT 60.119 47.826 0.00 0.00 40.65 4.24
1330 1349 0.175760 TATCAGTTCCACAGCTCGCC 59.824 55.000 0.00 0.00 0.00 5.54
1332 1351 0.898326 TCAGTTCCACAGCTCGCCTA 60.898 55.000 0.00 0.00 0.00 3.93
1355 1374 3.321315 CTTGATTTTCGCGGCGGCA 62.321 57.895 23.46 6.83 39.92 5.69
1379 1400 0.461870 TCTGATGGTTGAATCCCGCG 60.462 55.000 0.00 0.00 0.00 6.46
1380 1401 2.051804 CTGATGGTTGAATCCCGCGC 62.052 60.000 0.00 0.00 0.00 6.86
1381 1402 2.828549 ATGGTTGAATCCCGCGCC 60.829 61.111 0.00 0.00 0.00 6.53
1384 1405 4.160635 GTTGAATCCCGCGCCGTG 62.161 66.667 0.00 0.00 0.00 4.94
1488 1509 3.961182 CCATCTCTGATGGCAAATTTCG 58.039 45.455 12.85 0.00 31.75 3.46
1503 1524 0.601841 TTTCGGTCCAGTTTCCGCTC 60.602 55.000 0.00 0.00 45.44 5.03
1519 1540 1.135717 CGCTCTAGATCTCGCATCTGG 60.136 57.143 0.00 4.58 0.00 3.86
1520 1541 1.885887 GCTCTAGATCTCGCATCTGGT 59.114 52.381 0.00 0.00 0.00 4.00
1526 1548 0.538584 ATCTCGCATCTGGTTGCTGA 59.461 50.000 2.81 1.98 40.54 4.26
1532 1554 1.085091 CATCTGGTTGCTGACTCTGC 58.915 55.000 1.04 1.04 0.00 4.26
1569 1591 1.971505 GCCACCCCGATCTGATGTGA 61.972 60.000 7.25 0.00 0.00 3.58
1600 1622 1.106944 CAGGGGTTTGTGCCGAGTTT 61.107 55.000 0.00 0.00 0.00 2.66
1624 1646 4.890088 ACATTACTGGCTTACTTCGTTCA 58.110 39.130 0.00 0.00 0.00 3.18
1655 1678 6.071840 CCGTTGTGGGTTATTAAAATTCAGGA 60.072 38.462 0.00 0.00 0.00 3.86
1713 1736 3.509184 AGGGTTTAGTCCAGTAACTCGAC 59.491 47.826 0.00 0.00 0.00 4.20
1722 1745 7.876936 AGTCCAGTAACTCGACAGATTTATA 57.123 36.000 0.00 0.00 0.00 0.98
1752 1775 9.309516 CAATCTAGTGTTTACTTAGCGGAAATA 57.690 33.333 0.00 0.00 38.36 1.40
1761 1784 4.632153 ACTTAGCGGAAATATAGTGCTGG 58.368 43.478 0.00 0.00 37.12 4.85
1780 1803 1.492720 GTTGCTACTGATCTAGCGCC 58.507 55.000 2.29 0.00 41.93 6.53
1782 1805 1.290639 GCTACTGATCTAGCGCCCC 59.709 63.158 2.29 0.00 30.19 5.80
1790 1813 1.481056 ATCTAGCGCCCCACCATACC 61.481 60.000 2.29 0.00 0.00 2.73
1791 1814 3.165685 TAGCGCCCCACCATACCC 61.166 66.667 2.29 0.00 0.00 3.69
1805 1830 5.823045 CCACCATACCCTTCTTAGTGAATTC 59.177 44.000 0.00 0.00 33.71 2.17
1814 1839 6.294176 CCCTTCTTAGTGAATTCCAAACACTG 60.294 42.308 2.27 0.00 43.33 3.66
1831 1864 4.350245 ACACTGGTACCTATCTGCTGTAA 58.650 43.478 14.36 0.00 0.00 2.41
1832 1865 4.962995 ACACTGGTACCTATCTGCTGTAAT 59.037 41.667 14.36 0.00 0.00 1.89
1841 1877 5.661312 ACCTATCTGCTGTAATCTACACCAA 59.339 40.000 0.00 0.00 34.46 3.67
1864 1900 3.040147 TCGAGTTGTTTGTCTGATCCC 57.960 47.619 0.00 0.00 0.00 3.85
1865 1901 2.632996 TCGAGTTGTTTGTCTGATCCCT 59.367 45.455 0.00 0.00 0.00 4.20
1866 1902 3.071023 TCGAGTTGTTTGTCTGATCCCTT 59.929 43.478 0.00 0.00 0.00 3.95
1867 1903 3.433615 CGAGTTGTTTGTCTGATCCCTTC 59.566 47.826 0.00 0.00 0.00 3.46
1923 1959 2.569134 GAGAGCAGCGACGAGGTT 59.431 61.111 0.00 0.00 0.00 3.50
2007 2043 3.050275 GTTGTCCAGAGGTGCGCC 61.050 66.667 8.71 8.71 0.00 6.53
2008 2044 4.680237 TTGTCCAGAGGTGCGCCG 62.680 66.667 11.42 0.00 40.50 6.46
2241 2286 6.381481 TCATTTCCAATGCATCTGATGTAC 57.619 37.500 18.19 4.16 0.00 2.90
2254 2302 5.733226 TCTGATGTACGTATTGCATTTGG 57.267 39.130 0.00 0.00 0.00 3.28
2273 2321 2.041081 TGGTTCTGACCCCCTGTATTTG 59.959 50.000 0.00 0.00 45.92 2.32
2313 2361 1.534729 GAACTAAAGGGTGGTGCCTG 58.465 55.000 0.00 0.00 37.43 4.85
2444 2492 4.205587 AGCTGATAGCCTTTTCTGATTGG 58.794 43.478 0.00 0.00 43.77 3.16
2454 2502 4.868171 CCTTTTCTGATTGGCATGTCATTG 59.132 41.667 0.00 0.00 0.00 2.82
2482 2530 4.892433 TGAATTGGTTGGTAAGGCATTTG 58.108 39.130 0.00 0.00 0.00 2.32
2483 2531 2.829741 TTGGTTGGTAAGGCATTTGC 57.170 45.000 0.00 0.00 41.14 3.68
2573 2621 5.546526 GGTATGACCAAGGAAGATCTCATC 58.453 45.833 0.00 0.00 38.42 2.92
2603 2651 1.620822 GAACCATTGCCAAGTCTGGT 58.379 50.000 0.00 0.00 45.53 4.00
2645 2693 3.118847 TCCACTGATTGCTCTGCTCTAAG 60.119 47.826 0.00 0.00 0.00 2.18
2656 2704 8.743085 TTGCTCTGCTCTAAGATATTTGAAAT 57.257 30.769 0.00 0.00 0.00 2.17
2657 2705 8.375608 TGCTCTGCTCTAAGATATTTGAAATC 57.624 34.615 0.00 0.00 0.00 2.17
2660 2708 9.206870 CTCTGCTCTAAGATATTTGAAATCTCC 57.793 37.037 0.00 0.00 32.48 3.71
2662 2710 8.668510 TGCTCTAAGATATTTGAAATCTCCAC 57.331 34.615 0.00 0.00 32.48 4.02
2669 2717 8.125978 AGATATTTGAAATCTCCACTGCAAAA 57.874 30.769 0.00 0.00 0.00 2.44
2931 2979 0.606401 AAGACACTGACCAATGCCCG 60.606 55.000 0.00 0.00 0.00 6.13
3077 3125 4.142730 GCTGATGGATCATTCGCTATTTCC 60.143 45.833 0.00 0.00 36.02 3.13
3201 3250 7.734924 TCACCATATTATCATGTCTTCTTGC 57.265 36.000 0.00 0.00 0.00 4.01
3373 3480 8.805688 GTTTGTTTAATACGGTTGCTGTTTTTA 58.194 29.630 0.00 0.00 0.00 1.52
3559 3671 0.179097 TGTGCGTGCAGTCACTAACA 60.179 50.000 16.36 0.30 40.99 2.41
3952 4064 3.701040 TCAAAGCTTTGCTCTTTGTTCCT 59.299 39.130 30.35 0.00 46.27 3.36
3991 4103 5.293814 TGATCTGTACGAGAGCTACTACAAC 59.706 44.000 10.48 0.00 38.01 3.32
4075 4187 3.764218 TCTTCTTCCGAAGTACCTCAGT 58.236 45.455 8.01 0.00 45.47 3.41
4110 4223 7.495934 GGTACTGCATATTGACTTGTACAGATT 59.504 37.037 0.00 0.00 32.89 2.40
4143 4256 1.669779 GATGCTGGACTTGCACAGATC 59.330 52.381 6.25 3.46 43.59 2.75
4193 4310 3.646162 AGGGTATTGTTGACTCAGACACA 59.354 43.478 0.00 0.00 0.00 3.72
4459 4577 1.483004 GAGGAGAAGAAGGGCCAGTAC 59.517 57.143 6.18 0.00 0.00 2.73
4577 4695 3.412386 AGGTTTGTCCTGCATTCTGTAC 58.588 45.455 0.00 0.00 46.19 2.90
4766 4891 5.687177 GCAGCTAGAGAAATCTCCATTCCTT 60.687 44.000 6.81 0.00 43.88 3.36
4775 4900 1.065636 TCTCCATTCCTTGAGCAGCTG 60.066 52.381 10.11 10.11 0.00 4.24
4790 4915 4.401925 AGCAGCTGACCAAGAAAAACTAT 58.598 39.130 20.43 0.00 0.00 2.12
4861 4986 2.695359 ACCTATGCAACTGTGTTACCG 58.305 47.619 0.00 0.00 0.00 4.02
4864 4989 1.604604 ATGCAACTGTGTTACCGCTT 58.395 45.000 0.00 0.00 0.00 4.68
4865 4990 2.242047 TGCAACTGTGTTACCGCTTA 57.758 45.000 0.00 0.00 0.00 3.09
4866 4991 1.868498 TGCAACTGTGTTACCGCTTAC 59.132 47.619 0.00 0.00 0.00 2.34
4867 4992 2.140717 GCAACTGTGTTACCGCTTACT 58.859 47.619 0.00 0.00 0.00 2.24
4868 4993 2.157085 GCAACTGTGTTACCGCTTACTC 59.843 50.000 0.00 0.00 0.00 2.59
4869 4994 3.386486 CAACTGTGTTACCGCTTACTCA 58.614 45.455 0.00 0.00 0.00 3.41
4871 4996 2.889045 ACTGTGTTACCGCTTACTCAGA 59.111 45.455 14.01 0.00 38.54 3.27
4872 4997 3.057456 ACTGTGTTACCGCTTACTCAGAG 60.057 47.826 14.01 0.00 38.54 3.35
4874 4999 3.057736 TGTGTTACCGCTTACTCAGAGAC 60.058 47.826 3.79 0.00 0.00 3.36
4877 5024 1.629043 ACCGCTTACTCAGAGACCAA 58.371 50.000 3.79 0.00 0.00 3.67
4952 5099 6.090088 CAGAGACCAGTTTTTACTGAAGATCG 59.910 42.308 6.86 0.00 39.99 3.69
4963 5110 6.588348 TTACTGAAGATCGCAACACATATG 57.412 37.500 0.00 0.00 0.00 1.78
4964 5111 4.507710 ACTGAAGATCGCAACACATATGT 58.492 39.130 1.41 1.41 42.46 2.29
4994 5145 9.495572 CATACAGATTTTAGGAGATTTAGGACC 57.504 37.037 0.00 0.00 0.00 4.46
5005 5156 6.161170 AGGAGATTTAGGACCCAAATTCTGAT 59.839 38.462 0.00 0.00 0.00 2.90
5022 5173 4.797471 TCTGATTTGAACGCAAAGATTGG 58.203 39.130 0.00 0.00 46.27 3.16
5077 5228 3.341823 CAATGCTGCCAGAGAGTAACTT 58.658 45.455 0.00 0.00 0.00 2.66
5078 5229 3.710209 ATGCTGCCAGAGAGTAACTTT 57.290 42.857 0.00 0.00 0.00 2.66
5122 5273 1.302832 CTTCCACACCCCTGTCAGC 60.303 63.158 0.00 0.00 0.00 4.26
5139 5290 1.520342 GCGTGTCAGGAGCTGGATC 60.520 63.158 0.00 0.00 31.51 3.36
5167 5318 0.612732 TAGGCTTGGCATTTGCAGCT 60.613 50.000 12.76 0.00 44.36 4.24
5223 5375 9.802039 TGAAGTAACATAGTAACCCATTTCTTT 57.198 29.630 0.00 0.00 0.00 2.52
5256 5408 2.605295 TTCACCGACCCCGTGGAT 60.605 61.111 0.00 0.00 34.81 3.41
5331 5483 1.077858 CAAGGAGGGCCTGAAGCTC 60.078 63.158 12.95 0.00 46.28 4.09
5343 5495 1.293498 GAAGCTCGGCAAGGACTCA 59.707 57.895 0.00 0.00 0.00 3.41
5382 5534 0.318762 AGTCGTTCAAGGAGCTGACC 59.681 55.000 0.00 0.00 0.00 4.02
5484 5636 0.178955 TGGTCACCTCCAAGTACGGA 60.179 55.000 0.00 0.00 34.24 4.69
5610 5762 0.467384 CCATCATCAAGGAGCTCCGT 59.533 55.000 26.95 21.84 42.08 4.69
5637 5789 2.821366 GCCCAGGACAGCGATGTG 60.821 66.667 12.87 0.00 0.00 3.21
5645 5797 1.746220 GGACAGCGATGTGAGTAGAGT 59.254 52.381 12.87 0.00 0.00 3.24
5646 5798 2.223386 GGACAGCGATGTGAGTAGAGTC 60.223 54.545 12.87 0.00 0.00 3.36
5647 5799 2.680841 GACAGCGATGTGAGTAGAGTCT 59.319 50.000 12.87 0.00 0.00 3.24
5648 5800 2.680841 ACAGCGATGTGAGTAGAGTCTC 59.319 50.000 5.03 0.00 35.28 3.36
5650 5802 1.335496 GCGATGTGAGTAGAGTCTCCC 59.665 57.143 0.00 0.00 33.93 4.30
5652 5804 3.744846 GCGATGTGAGTAGAGTCTCCCTA 60.745 52.174 0.00 0.00 33.93 3.53
5653 5805 4.647611 CGATGTGAGTAGAGTCTCCCTAT 58.352 47.826 0.00 0.00 33.93 2.57
5654 5806 5.795972 CGATGTGAGTAGAGTCTCCCTATA 58.204 45.833 0.00 0.00 33.93 1.31
5656 5808 7.557724 CGATGTGAGTAGAGTCTCCCTATATA 58.442 42.308 0.00 0.00 33.93 0.86
5657 5809 7.493320 CGATGTGAGTAGAGTCTCCCTATATAC 59.507 44.444 0.00 0.00 33.93 1.47
5658 5810 7.018487 TGTGAGTAGAGTCTCCCTATATACC 57.982 44.000 0.00 0.00 33.93 2.73
5659 5811 6.012683 TGTGAGTAGAGTCTCCCTATATACCC 60.013 46.154 0.00 0.00 33.93 3.69
5660 5812 5.491800 TGAGTAGAGTCTCCCTATATACCCC 59.508 48.000 0.00 0.00 33.93 4.95
5661 5813 5.688789 AGTAGAGTCTCCCTATATACCCCT 58.311 45.833 0.00 0.00 0.00 4.79
5665 5820 5.194942 AGAGTCTCCCTATATACCCCTGATC 59.805 48.000 0.00 0.00 0.00 2.92
5672 5827 5.251700 CCCTATATACCCCTGATCTTTGCTT 59.748 44.000 0.00 0.00 0.00 3.91
5673 5828 6.410540 CCTATATACCCCTGATCTTTGCTTC 58.589 44.000 0.00 0.00 0.00 3.86
5674 5829 5.912149 ATATACCCCTGATCTTTGCTTCA 57.088 39.130 0.00 0.00 0.00 3.02
5684 5839 1.473677 TCTTTGCTTCATGAATGCCGG 59.526 47.619 20.15 0.00 0.00 6.13
5685 5840 0.108709 TTTGCTTCATGAATGCCGGC 60.109 50.000 22.73 22.73 0.00 6.13
5689 5844 2.345880 CTTCATGAATGCCGGCAGCC 62.346 60.000 35.36 26.90 42.71 4.85
5702 5857 0.250038 GGCAGCCGAAGATGATGCTA 60.250 55.000 0.00 0.00 37.08 3.49
5704 5859 1.942657 GCAGCCGAAGATGATGCTAAA 59.057 47.619 0.00 0.00 34.10 1.85
5705 5860 2.551459 GCAGCCGAAGATGATGCTAAAT 59.449 45.455 0.00 0.00 34.10 1.40
5706 5861 3.004106 GCAGCCGAAGATGATGCTAAATT 59.996 43.478 0.00 0.00 34.10 1.82
5707 5862 4.534168 CAGCCGAAGATGATGCTAAATTG 58.466 43.478 0.00 0.00 31.69 2.32
5708 5863 3.004106 AGCCGAAGATGATGCTAAATTGC 59.996 43.478 0.00 0.00 30.97 3.56
5711 5866 4.534168 CGAAGATGATGCTAAATTGCTGG 58.466 43.478 0.00 0.00 0.00 4.85
5712 5867 4.296690 GAAGATGATGCTAAATTGCTGGC 58.703 43.478 0.00 0.00 0.00 4.85
5714 5869 2.945447 TGATGCTAAATTGCTGGCAC 57.055 45.000 0.00 0.00 37.52 5.01
5743 5905 3.233980 TGTGTGCAGAGCGAGGGT 61.234 61.111 0.00 0.00 0.00 4.34
5855 6017 2.659610 GGTCGGTGCAGAAGAGCT 59.340 61.111 7.64 0.00 34.99 4.09
5916 6078 4.779733 GGAGGAGCCCGAGGTGGA 62.780 72.222 0.00 0.00 42.00 4.02
5917 6079 2.683933 GAGGAGCCCGAGGTGGAA 60.684 66.667 0.00 0.00 42.00 3.53
5929 6094 2.530701 GAGGTGGAAGAGAAGGAGTCA 58.469 52.381 0.00 0.00 0.00 3.41
5931 6096 1.066502 GGTGGAAGAGAAGGAGTCAGC 60.067 57.143 0.00 0.00 0.00 4.26
5932 6097 1.620819 GTGGAAGAGAAGGAGTCAGCA 59.379 52.381 0.00 0.00 0.00 4.41
5988 6153 1.355066 GACGAGCTGTAGTTGCTGCC 61.355 60.000 0.00 0.00 41.30 4.85
6063 6233 1.609841 GGTTTCGAGGGACGTCCATTT 60.610 52.381 34.40 19.87 43.13 2.32
6188 6362 4.088634 TCAAATTAGCATGCCTGGTTTCT 58.911 39.130 15.66 0.00 34.31 2.52
6197 6371 0.250338 GCCTGGTTTCTGTCCGAAGT 60.250 55.000 0.00 0.00 32.21 3.01
6209 6391 1.534163 GTCCGAAGTGCCCTTTTGTAC 59.466 52.381 0.00 0.00 0.00 2.90
6230 6412 3.119137 ACACTTGCTGTTTTGGTTTCCTC 60.119 43.478 0.00 0.00 0.00 3.71
6231 6413 3.096092 ACTTGCTGTTTTGGTTTCCTCA 58.904 40.909 0.00 0.00 0.00 3.86
6285 6467 1.134877 GGGTTACGAAGGTAGTCTGGC 60.135 57.143 0.00 0.00 0.00 4.85
6286 6468 1.823610 GGTTACGAAGGTAGTCTGGCT 59.176 52.381 0.00 0.00 0.00 4.75
6291 6473 2.093106 CGAAGGTAGTCTGGCTGTACT 58.907 52.381 0.00 0.00 0.00 2.73
6300 6482 5.746990 AGTCTGGCTGTACTGAGTTTTAT 57.253 39.130 3.61 0.00 0.00 1.40
6302 6484 4.870991 GTCTGGCTGTACTGAGTTTTATCC 59.129 45.833 3.61 0.00 0.00 2.59
6315 6497 5.593909 TGAGTTTTATCCATGCAGGGTTATG 59.406 40.000 18.43 0.00 38.24 1.90
6320 6502 0.552848 CCATGCAGGGTTATGAGGGT 59.447 55.000 9.85 0.00 0.00 4.34
6321 6503 1.774254 CCATGCAGGGTTATGAGGGTA 59.226 52.381 9.85 0.00 0.00 3.69
6322 6504 2.224621 CCATGCAGGGTTATGAGGGTAG 60.225 54.545 9.85 0.00 0.00 3.18
6323 6505 2.263895 TGCAGGGTTATGAGGGTAGT 57.736 50.000 0.00 0.00 0.00 2.73
6324 6506 2.557869 TGCAGGGTTATGAGGGTAGTT 58.442 47.619 0.00 0.00 0.00 2.24
6325 6507 2.504175 TGCAGGGTTATGAGGGTAGTTC 59.496 50.000 0.00 0.00 0.00 3.01
6326 6508 2.158798 GCAGGGTTATGAGGGTAGTTCC 60.159 54.545 0.00 0.00 0.00 3.62
6339 6521 4.628963 GGTAGTTCCCAAGGTTGAGTTA 57.371 45.455 0.00 0.00 0.00 2.24
6345 6527 0.872388 CCAAGGTTGAGTTACCACGC 59.128 55.000 0.00 0.00 40.82 5.34
6348 6530 2.674084 GGTTGAGTTACCACGCGGC 61.674 63.158 12.47 0.00 38.12 6.53
6349 6531 1.957186 GTTGAGTTACCACGCGGCA 60.957 57.895 12.47 0.00 34.57 5.69
6362 6544 3.799755 CGGCAAGCGTGGTTAGCC 61.800 66.667 0.79 12.27 41.86 3.93
6368 6550 3.252484 GCGTGGTTAGCCGCTACG 61.252 66.667 7.62 8.71 46.08 3.51
6369 6551 2.180017 CGTGGTTAGCCGCTACGT 59.820 61.111 7.62 0.00 42.91 3.57
6370 6552 1.429021 CGTGGTTAGCCGCTACGTA 59.571 57.895 7.62 0.00 42.91 3.57
6371 6553 0.029834 CGTGGTTAGCCGCTACGTAT 59.970 55.000 7.62 0.00 42.91 3.06
6372 6554 1.264020 CGTGGTTAGCCGCTACGTATA 59.736 52.381 7.62 0.00 42.91 1.47
6373 6555 2.095567 CGTGGTTAGCCGCTACGTATAT 60.096 50.000 7.62 0.00 42.91 0.86
6374 6556 3.610114 CGTGGTTAGCCGCTACGTATATT 60.610 47.826 7.62 0.00 42.91 1.28
6375 6557 3.916776 GTGGTTAGCCGCTACGTATATTC 59.083 47.826 0.00 0.00 41.88 1.75
6376 6558 3.822735 TGGTTAGCCGCTACGTATATTCT 59.177 43.478 0.00 0.00 37.67 2.40
6377 6559 4.083110 TGGTTAGCCGCTACGTATATTCTC 60.083 45.833 0.00 0.00 37.67 2.87
6380 6562 4.579454 AGCCGCTACGTATATTCTCAAA 57.421 40.909 0.00 0.00 0.00 2.69
6381 6563 4.547532 AGCCGCTACGTATATTCTCAAAG 58.452 43.478 0.00 0.00 0.00 2.77
6382 6564 3.121445 GCCGCTACGTATATTCTCAAAGC 59.879 47.826 0.00 0.00 0.00 3.51
6384 6566 4.383052 CCGCTACGTATATTCTCAAAGCAG 59.617 45.833 0.00 0.00 0.00 4.24
6385 6567 4.383052 CGCTACGTATATTCTCAAAGCAGG 59.617 45.833 0.00 0.00 0.00 4.85
6386 6568 5.529791 GCTACGTATATTCTCAAAGCAGGA 58.470 41.667 0.00 0.00 0.00 3.86
6388 6570 4.372656 ACGTATATTCTCAAAGCAGGAGC 58.627 43.478 0.00 0.00 42.56 4.70
6398 6580 2.659610 GCAGGAGCGAGTTCCACT 59.340 61.111 8.64 0.00 39.84 4.00
6399 6581 1.004440 GCAGGAGCGAGTTCCACTT 60.004 57.895 8.64 0.00 39.84 3.16
6401 6583 0.671781 CAGGAGCGAGTTCCACTTGG 60.672 60.000 8.64 0.00 39.84 3.61
6415 6631 0.106519 ACTTGGGAGTTTGTGCTGCT 60.107 50.000 0.00 0.00 29.87 4.24
6419 6635 0.595095 GGGAGTTTGTGCTGCTGAAG 59.405 55.000 0.00 0.00 0.00 3.02
6436 6652 4.253685 CTGAAGCCGATTTTAGACTGGAA 58.746 43.478 0.00 0.00 0.00 3.53
6438 6654 3.695830 AGCCGATTTTAGACTGGAACA 57.304 42.857 0.00 0.00 0.00 3.18
6458 6674 7.765360 TGGAACAGAAATGGATTGATTATTTGC 59.235 33.333 0.00 0.00 0.00 3.68
6459 6675 7.983484 GGAACAGAAATGGATTGATTATTTGCT 59.017 33.333 0.00 0.00 0.00 3.91
6460 6676 8.712285 AACAGAAATGGATTGATTATTTGCTG 57.288 30.769 0.00 0.00 32.11 4.41
6461 6677 7.270047 ACAGAAATGGATTGATTATTTGCTGG 58.730 34.615 0.00 0.00 31.22 4.85
6462 6678 7.124599 ACAGAAATGGATTGATTATTTGCTGGA 59.875 33.333 0.00 0.00 31.22 3.86
6463 6679 7.652105 CAGAAATGGATTGATTATTTGCTGGAG 59.348 37.037 0.00 0.00 0.00 3.86
6464 6680 7.343833 AGAAATGGATTGATTATTTGCTGGAGT 59.656 33.333 0.00 0.00 0.00 3.85
6465 6681 7.427989 AATGGATTGATTATTTGCTGGAGTT 57.572 32.000 0.00 0.00 0.00 3.01
6466 6682 6.211587 TGGATTGATTATTTGCTGGAGTTG 57.788 37.500 0.00 0.00 0.00 3.16
6467 6683 5.127519 TGGATTGATTATTTGCTGGAGTTGG 59.872 40.000 0.00 0.00 0.00 3.77
6468 6684 5.127682 GGATTGATTATTTGCTGGAGTTGGT 59.872 40.000 0.00 0.00 0.00 3.67
6469 6685 5.643379 TTGATTATTTGCTGGAGTTGGTC 57.357 39.130 0.00 0.00 0.00 4.02
6471 6687 2.507407 TATTTGCTGGAGTTGGTCCC 57.493 50.000 0.00 0.00 46.31 4.46
6472 6688 0.482446 ATTTGCTGGAGTTGGTCCCA 59.518 50.000 0.00 0.00 46.31 4.37
6473 6689 0.482446 TTTGCTGGAGTTGGTCCCAT 59.518 50.000 0.00 0.00 46.31 4.00
6474 6690 0.482446 TTGCTGGAGTTGGTCCCATT 59.518 50.000 0.00 0.00 46.31 3.16
6475 6691 0.482446 TGCTGGAGTTGGTCCCATTT 59.518 50.000 0.00 0.00 46.31 2.32
6476 6692 1.133199 TGCTGGAGTTGGTCCCATTTT 60.133 47.619 0.00 0.00 46.31 1.82
6477 6693 2.109128 TGCTGGAGTTGGTCCCATTTTA 59.891 45.455 0.00 0.00 46.31 1.52
6478 6694 2.755103 GCTGGAGTTGGTCCCATTTTAG 59.245 50.000 0.00 0.00 46.31 1.85
6479 6695 3.561313 GCTGGAGTTGGTCCCATTTTAGA 60.561 47.826 0.00 0.00 46.31 2.10
6480 6696 4.860022 CTGGAGTTGGTCCCATTTTAGAT 58.140 43.478 0.00 0.00 46.31 1.98
6481 6697 4.855340 TGGAGTTGGTCCCATTTTAGATC 58.145 43.478 0.00 0.00 46.31 2.75
6482 6698 4.290985 TGGAGTTGGTCCCATTTTAGATCA 59.709 41.667 0.00 0.00 46.31 2.92
6483 6699 4.884164 GGAGTTGGTCCCATTTTAGATCAG 59.116 45.833 0.00 0.00 39.88 2.90
6484 6700 5.339200 GGAGTTGGTCCCATTTTAGATCAGA 60.339 44.000 0.00 0.00 39.88 3.27
6485 6701 6.139679 AGTTGGTCCCATTTTAGATCAGAA 57.860 37.500 0.00 0.00 0.00 3.02
6486 6702 5.946377 AGTTGGTCCCATTTTAGATCAGAAC 59.054 40.000 0.00 0.00 0.00 3.01
6487 6703 5.779241 TGGTCCCATTTTAGATCAGAACT 57.221 39.130 0.00 0.00 0.00 3.01
6488 6704 5.500234 TGGTCCCATTTTAGATCAGAACTG 58.500 41.667 0.00 0.00 0.00 3.16
6489 6705 5.014123 TGGTCCCATTTTAGATCAGAACTGT 59.986 40.000 0.00 0.00 0.00 3.55
6490 6706 5.586643 GGTCCCATTTTAGATCAGAACTGTC 59.413 44.000 0.00 0.24 0.00 3.51
6491 6707 6.410540 GTCCCATTTTAGATCAGAACTGTCT 58.589 40.000 0.00 6.86 32.85 3.41
6492 6708 7.364762 GGTCCCATTTTAGATCAGAACTGTCTA 60.365 40.741 0.00 6.05 30.85 2.59
6493 6709 8.207545 GTCCCATTTTAGATCAGAACTGTCTAT 58.792 37.037 0.00 0.00 30.85 1.98
6494 6710 8.206867 TCCCATTTTAGATCAGAACTGTCTATG 58.793 37.037 0.00 9.50 30.85 2.23
6495 6711 7.989741 CCCATTTTAGATCAGAACTGTCTATGT 59.010 37.037 0.00 0.00 30.85 2.29
6496 6712 8.824781 CCATTTTAGATCAGAACTGTCTATGTG 58.175 37.037 0.00 10.71 30.85 3.21
6497 6713 9.591792 CATTTTAGATCAGAACTGTCTATGTGA 57.408 33.333 0.00 0.00 30.85 3.58
6500 6716 9.591792 TTTAGATCAGAACTGTCTATGTGATTG 57.408 33.333 0.00 0.00 30.85 2.67
6501 6717 7.415592 AGATCAGAACTGTCTATGTGATTGA 57.584 36.000 0.00 0.00 30.85 2.57
6502 6718 8.020777 AGATCAGAACTGTCTATGTGATTGAT 57.979 34.615 0.00 0.00 30.85 2.57
6503 6719 7.927092 AGATCAGAACTGTCTATGTGATTGATG 59.073 37.037 0.00 0.00 30.85 3.07
6504 6720 6.939622 TCAGAACTGTCTATGTGATTGATGT 58.060 36.000 1.73 0.00 30.85 3.06
6505 6721 6.815142 TCAGAACTGTCTATGTGATTGATGTG 59.185 38.462 1.73 0.00 30.85 3.21
6506 6722 6.592994 CAGAACTGTCTATGTGATTGATGTGT 59.407 38.462 0.00 0.00 30.85 3.72
6507 6723 6.592994 AGAACTGTCTATGTGATTGATGTGTG 59.407 38.462 0.00 0.00 29.93 3.82
6508 6724 5.798132 ACTGTCTATGTGATTGATGTGTGT 58.202 37.500 0.00 0.00 0.00 3.72
6509 6725 5.871524 ACTGTCTATGTGATTGATGTGTGTC 59.128 40.000 0.00 0.00 0.00 3.67
6513 6729 6.591448 GTCTATGTGATTGATGTGTGTCTGAA 59.409 38.462 0.00 0.00 0.00 3.02
6522 6738 1.048601 GTGTGTCTGAAGAGGTGGGA 58.951 55.000 0.00 0.00 0.00 4.37
6523 6739 1.416401 GTGTGTCTGAAGAGGTGGGAA 59.584 52.381 0.00 0.00 0.00 3.97
6529 6745 2.108250 TCTGAAGAGGTGGGAAAAAGGG 59.892 50.000 0.00 0.00 0.00 3.95
6535 6751 0.485543 GGTGGGAAAAAGGGGGAAGA 59.514 55.000 0.00 0.00 0.00 2.87
6536 6752 1.132977 GGTGGGAAAAAGGGGGAAGAA 60.133 52.381 0.00 0.00 0.00 2.52
6538 6754 2.632996 GTGGGAAAAAGGGGGAAGAAAG 59.367 50.000 0.00 0.00 0.00 2.62
6547 6772 3.687125 AGGGGGAAGAAAGAAAATCGTC 58.313 45.455 0.00 0.00 0.00 4.20
6572 6797 2.438434 CCGTGGGATTGCTGGGAC 60.438 66.667 0.00 0.00 0.00 4.46
6573 6798 2.671070 CGTGGGATTGCTGGGACT 59.329 61.111 0.00 0.00 0.00 3.85
6574 6799 1.002134 CGTGGGATTGCTGGGACTT 60.002 57.895 0.00 0.00 0.00 3.01
6575 6800 1.308069 CGTGGGATTGCTGGGACTTG 61.308 60.000 0.00 0.00 0.00 3.16
6576 6801 1.304381 TGGGATTGCTGGGACTTGC 60.304 57.895 0.00 0.00 0.00 4.01
6577 6802 2.054453 GGGATTGCTGGGACTTGCC 61.054 63.158 0.00 0.00 0.00 4.52
6578 6803 1.304381 GGATTGCTGGGACTTGCCA 60.304 57.895 0.00 0.00 38.95 4.92
6579 6804 1.598701 GGATTGCTGGGACTTGCCAC 61.599 60.000 0.00 0.00 38.95 5.01
6580 6805 0.610232 GATTGCTGGGACTTGCCACT 60.610 55.000 0.00 0.00 38.95 4.00
6582 6807 0.823356 TTGCTGGGACTTGCCACTTC 60.823 55.000 0.00 0.00 38.95 3.01
6584 6809 2.281484 TGGGACTTGCCACTTCGC 60.281 61.111 0.00 0.00 38.95 4.70
6585 6810 2.281484 GGGACTTGCCACTTCGCA 60.281 61.111 0.00 0.00 38.95 5.10
6586 6811 2.617274 GGGACTTGCCACTTCGCAC 61.617 63.158 0.00 0.00 38.83 5.34
6587 6812 1.598130 GGACTTGCCACTTCGCACT 60.598 57.895 0.00 0.00 38.83 4.40
6589 6814 0.235926 GACTTGCCACTTCGCACTTC 59.764 55.000 0.00 0.00 38.83 3.01
6590 6815 0.463654 ACTTGCCACTTCGCACTTCA 60.464 50.000 0.00 0.00 38.83 3.02
6621 6852 0.103937 TGGCACCAAAAAGGAAAGCG 59.896 50.000 0.00 0.00 41.22 4.68
6646 6877 2.185350 CTCCGCCGATCTTGCAGT 59.815 61.111 5.15 0.00 0.00 4.40
6647 6878 2.125552 TCCGCCGATCTTGCAGTG 60.126 61.111 5.15 0.00 0.00 3.66
6666 6897 2.753043 CAGCAATGGCCGCTCCTT 60.753 61.111 0.00 0.00 42.56 3.36
6667 6898 2.439156 AGCAATGGCCGCTCCTTC 60.439 61.111 0.00 0.00 42.56 3.46
6668 6899 3.521796 GCAATGGCCGCTCCTTCC 61.522 66.667 0.00 0.00 35.26 3.46
6669 6900 2.830370 CAATGGCCGCTCCTTCCC 60.830 66.667 0.00 0.00 35.26 3.97
6670 6901 4.129148 AATGGCCGCTCCTTCCCC 62.129 66.667 0.00 0.00 35.26 4.81
6685 6916 3.039526 CCCTCCCCCTCCTCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
6686 6917 1.705450 CCCTCCCCCTCCTCCTCTA 60.705 68.421 0.00 0.00 0.00 2.43
6687 6918 1.735455 CCCTCCCCCTCCTCCTCTAG 61.735 70.000 0.00 0.00 0.00 2.43
6688 6919 0.703056 CCTCCCCCTCCTCCTCTAGA 60.703 65.000 0.00 0.00 0.00 2.43
6691 6922 0.411848 CCCCCTCCTCCTCTAGATCC 59.588 65.000 0.00 0.00 0.00 3.36
6708 6939 3.171987 CGCAGGTAAGCAGCACTG 58.828 61.111 0.00 0.00 0.00 3.66
6709 6940 1.669115 CGCAGGTAAGCAGCACTGT 60.669 57.895 0.00 0.00 33.62 3.55
6713 6944 2.005451 CAGGTAAGCAGCACTGTCATC 58.995 52.381 0.00 0.00 0.00 2.92
6714 6945 1.625315 AGGTAAGCAGCACTGTCATCA 59.375 47.619 0.00 0.00 0.00 3.07
6723 6965 1.202627 GCACTGTCATCATCCTCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
6728 6970 1.132881 GTCATCATCCTCTCCCCTCCT 60.133 57.143 0.00 0.00 0.00 3.69
6731 6973 1.324014 TCATCCTCTCCCCTCCTCTT 58.676 55.000 0.00 0.00 0.00 2.85
6736 6978 0.252467 CTCTCCCCTCCTCTTGGTGT 60.252 60.000 0.00 0.00 34.23 4.16
6743 6985 1.912043 CCTCCTCTTGGTGTTCCTGAT 59.088 52.381 0.00 0.00 34.23 2.90
6744 6986 2.307098 CCTCCTCTTGGTGTTCCTGATT 59.693 50.000 0.00 0.00 34.23 2.57
6745 6987 3.519510 CCTCCTCTTGGTGTTCCTGATTA 59.480 47.826 0.00 0.00 34.23 1.75
6746 6988 4.383552 CCTCCTCTTGGTGTTCCTGATTAG 60.384 50.000 0.00 0.00 34.23 1.73
6748 6990 4.223032 TCCTCTTGGTGTTCCTGATTAGTC 59.777 45.833 0.00 0.00 34.23 2.59
6755 6997 4.562963 GGTGTTCCTGATTAGTCGGTTTCT 60.563 45.833 0.00 0.00 0.00 2.52
6758 7000 3.437213 TCCTGATTAGTCGGTTTCTCCA 58.563 45.455 0.00 0.00 35.57 3.86
6759 7001 4.030913 TCCTGATTAGTCGGTTTCTCCAT 58.969 43.478 0.00 0.00 35.57 3.41
6761 7003 5.659525 TCCTGATTAGTCGGTTTCTCCATTA 59.340 40.000 0.00 0.00 35.57 1.90
6762 7004 6.155565 TCCTGATTAGTCGGTTTCTCCATTAA 59.844 38.462 0.00 0.00 35.57 1.40
6764 7006 6.703319 TGATTAGTCGGTTTCTCCATTAACA 58.297 36.000 0.00 0.00 35.57 2.41
6765 7007 6.592607 TGATTAGTCGGTTTCTCCATTAACAC 59.407 38.462 0.00 0.00 35.57 3.32
6768 7010 2.372504 TCGGTTTCTCCATTAACACCCA 59.627 45.455 0.00 0.00 35.57 4.51
6769 7011 2.486592 CGGTTTCTCCATTAACACCCAC 59.513 50.000 0.00 0.00 35.57 4.61
6773 7015 0.701731 CTCCATTAACACCCACCCCA 59.298 55.000 0.00 0.00 0.00 4.96
6774 7016 0.406361 TCCATTAACACCCACCCCAC 59.594 55.000 0.00 0.00 0.00 4.61
6775 7017 0.613572 CCATTAACACCCACCCCACC 60.614 60.000 0.00 0.00 0.00 4.61
6776 7018 0.407918 CATTAACACCCACCCCACCT 59.592 55.000 0.00 0.00 0.00 4.00
6777 7019 0.702316 ATTAACACCCACCCCACCTC 59.298 55.000 0.00 0.00 0.00 3.85
6778 7020 1.428718 TTAACACCCACCCCACCTCC 61.429 60.000 0.00 0.00 0.00 4.30
6811 7053 2.272146 CCATGGTGGAAGGGTCGG 59.728 66.667 2.57 0.00 40.96 4.79
6813 7055 3.728373 ATGGTGGAAGGGTCGGCC 61.728 66.667 0.00 0.00 0.00 6.13
6832 7074 4.834453 CGAGCAGGCTGGAGCAGG 62.834 72.222 17.64 0.00 44.36 4.85
6833 7075 3.397439 GAGCAGGCTGGAGCAGGA 61.397 66.667 17.64 0.00 44.36 3.86
6837 7079 3.715097 AGGCTGGAGCAGGAGCAC 61.715 66.667 0.20 0.00 45.49 4.40
6845 7090 3.958860 GCAGGAGCACCACCACCT 61.959 66.667 2.07 0.00 41.58 4.00
6898 7143 1.294459 GACCTTCCCGCGGTAACTT 59.706 57.895 26.12 4.75 34.19 2.66
6902 7147 2.864378 CTTCCCGCGGTAACTTCCCC 62.864 65.000 26.12 0.00 0.00 4.81
6903 7148 3.708544 CCCGCGGTAACTTCCCCA 61.709 66.667 26.12 0.00 0.00 4.96
6906 7151 2.751688 GCGGTAACTTCCCCACCA 59.248 61.111 0.00 0.00 32.32 4.17
6909 7154 1.770749 CGGTAACTTCCCCACCACCA 61.771 60.000 0.00 0.00 32.32 4.17
6917 7162 2.529136 CCCACCACCACCTCCTCA 60.529 66.667 0.00 0.00 0.00 3.86
6918 7163 2.596851 CCCACCACCACCTCCTCAG 61.597 68.421 0.00 0.00 0.00 3.35
6919 7164 2.596851 CCACCACCACCTCCTCAGG 61.597 68.421 0.00 0.00 46.87 3.86
6920 7165 2.930562 ACCACCACCTCCTCAGGC 60.931 66.667 0.00 0.00 45.05 4.85
6921 7166 2.608988 CCACCACCTCCTCAGGCT 60.609 66.667 0.00 0.00 45.05 4.58
6922 7167 2.227036 CCACCACCTCCTCAGGCTT 61.227 63.158 0.00 0.00 45.05 4.35
6923 7168 1.002868 CACCACCTCCTCAGGCTTG 60.003 63.158 0.00 0.00 45.05 4.01
6924 7169 1.462238 ACCACCTCCTCAGGCTTGT 60.462 57.895 0.00 0.00 45.05 3.16
6925 7170 1.002868 CCACCTCCTCAGGCTTGTG 60.003 63.158 0.00 0.00 45.05 3.33
6926 7171 1.757306 CACCTCCTCAGGCTTGTGT 59.243 57.895 0.00 0.00 45.05 3.72
6927 7172 0.604780 CACCTCCTCAGGCTTGTGTG 60.605 60.000 0.00 0.00 45.05 3.82
6928 7173 1.002868 CCTCCTCAGGCTTGTGTGG 60.003 63.158 0.00 0.00 30.98 4.17
6929 7174 1.757306 CTCCTCAGGCTTGTGTGGT 59.243 57.895 0.00 0.00 33.55 4.16
6930 7175 0.604780 CTCCTCAGGCTTGTGTGGTG 60.605 60.000 0.00 0.00 33.55 4.17
6931 7176 1.149174 CCTCAGGCTTGTGTGGTGT 59.851 57.895 0.00 0.00 0.00 4.16
6932 7177 0.466189 CCTCAGGCTTGTGTGGTGTT 60.466 55.000 0.00 0.00 0.00 3.32
6933 7178 0.947244 CTCAGGCTTGTGTGGTGTTC 59.053 55.000 0.00 0.00 0.00 3.18
6934 7179 0.546122 TCAGGCTTGTGTGGTGTTCT 59.454 50.000 0.00 0.00 0.00 3.01
6935 7180 0.947244 CAGGCTTGTGTGGTGTTCTC 59.053 55.000 0.00 0.00 0.00 2.87
6936 7181 0.179018 AGGCTTGTGTGGTGTTCTCC 60.179 55.000 0.00 0.00 0.00 3.71
6937 7182 0.465460 GGCTTGTGTGGTGTTCTCCA 60.465 55.000 0.00 0.00 34.85 3.86
6938 7183 1.609208 GCTTGTGTGGTGTTCTCCAT 58.391 50.000 0.00 0.00 39.81 3.41
6939 7184 2.552155 GGCTTGTGTGGTGTTCTCCATA 60.552 50.000 0.00 0.00 39.81 2.74
6940 7185 2.744202 GCTTGTGTGGTGTTCTCCATAG 59.256 50.000 0.00 0.00 39.81 2.23
6941 7186 3.557054 GCTTGTGTGGTGTTCTCCATAGA 60.557 47.826 0.00 0.00 39.81 1.98
6942 7187 4.836825 CTTGTGTGGTGTTCTCCATAGAT 58.163 43.478 0.00 0.00 39.81 1.98
6943 7188 4.471904 TGTGTGGTGTTCTCCATAGATC 57.528 45.455 0.00 0.00 39.81 2.75
6944 7189 4.096681 TGTGTGGTGTTCTCCATAGATCT 58.903 43.478 0.00 0.00 39.81 2.75
6945 7190 4.081476 TGTGTGGTGTTCTCCATAGATCTG 60.081 45.833 5.18 0.00 39.81 2.90
6946 7191 3.118629 TGTGGTGTTCTCCATAGATCTGC 60.119 47.826 5.18 0.00 39.81 4.26
6947 7192 3.106827 TGGTGTTCTCCATAGATCTGCA 58.893 45.455 5.18 0.00 31.96 4.41
6948 7193 3.118629 TGGTGTTCTCCATAGATCTGCAC 60.119 47.826 5.18 2.00 31.96 4.57
6949 7194 3.133721 GGTGTTCTCCATAGATCTGCACT 59.866 47.826 5.18 0.00 0.00 4.40
6950 7195 4.383552 GGTGTTCTCCATAGATCTGCACTT 60.384 45.833 5.18 0.00 0.00 3.16
6951 7196 4.808364 GTGTTCTCCATAGATCTGCACTTC 59.192 45.833 5.18 0.00 0.00 3.01
6952 7197 4.713814 TGTTCTCCATAGATCTGCACTTCT 59.286 41.667 5.18 0.00 0.00 2.85
6953 7198 4.933505 TCTCCATAGATCTGCACTTCTG 57.066 45.455 5.18 0.00 0.00 3.02
6954 7199 3.640498 TCTCCATAGATCTGCACTTCTGG 59.360 47.826 5.18 1.39 0.00 3.86
6955 7200 2.702478 TCCATAGATCTGCACTTCTGGG 59.298 50.000 5.18 5.89 0.00 4.45
6956 7201 2.224475 CCATAGATCTGCACTTCTGGGG 60.224 54.545 5.18 2.52 0.00 4.96
6957 7202 0.833287 TAGATCTGCACTTCTGGGGC 59.167 55.000 5.18 0.00 0.00 5.80
6958 7203 1.817099 GATCTGCACTTCTGGGGCG 60.817 63.158 0.00 0.00 0.00 6.13
6959 7204 2.244117 GATCTGCACTTCTGGGGCGA 62.244 60.000 0.00 0.00 0.00 5.54
6960 7205 1.841302 ATCTGCACTTCTGGGGCGAA 61.841 55.000 0.00 0.00 0.00 4.70
6961 7206 1.600636 CTGCACTTCTGGGGCGAAA 60.601 57.895 0.00 0.00 0.00 3.46
6962 7207 1.152860 TGCACTTCTGGGGCGAAAA 60.153 52.632 0.00 0.00 0.00 2.29
6963 7208 0.753479 TGCACTTCTGGGGCGAAAAA 60.753 50.000 0.00 0.00 0.00 1.94
6964 7209 0.318699 GCACTTCTGGGGCGAAAAAC 60.319 55.000 0.00 0.00 0.00 2.43
6965 7210 1.318576 CACTTCTGGGGCGAAAAACT 58.681 50.000 0.00 0.00 0.00 2.66
6966 7211 2.500229 CACTTCTGGGGCGAAAAACTA 58.500 47.619 0.00 0.00 0.00 2.24
6967 7212 2.484264 CACTTCTGGGGCGAAAAACTAG 59.516 50.000 0.00 0.00 0.00 2.57
6968 7213 2.105993 ACTTCTGGGGCGAAAAACTAGT 59.894 45.455 0.00 0.00 0.00 2.57
6969 7214 2.178912 TCTGGGGCGAAAAACTAGTG 57.821 50.000 0.00 0.00 0.00 2.74
6970 7215 1.418637 TCTGGGGCGAAAAACTAGTGT 59.581 47.619 0.00 0.00 0.00 3.55
6971 7216 2.158726 TCTGGGGCGAAAAACTAGTGTT 60.159 45.455 0.00 0.00 38.16 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 155 6.599244 GTCTTAACCATCCAATCACAGATTGA 59.401 38.462 18.51 7.53 39.11 2.57
174 177 3.696548 TGCTGAGAATATCACTGTCGTCT 59.303 43.478 0.00 0.00 33.22 4.18
180 183 6.286758 ACCTTATGTGCTGAGAATATCACTG 58.713 40.000 0.00 0.00 33.22 3.66
281 284 2.736719 CGATGCAAACGTCTCCTCTCAT 60.737 50.000 8.20 0.00 0.00 2.90
309 312 4.693566 TGATAAAGTCACCACGGATGTTTC 59.306 41.667 0.00 0.00 0.00 2.78
317 320 6.480524 TTTGAGATTGATAAAGTCACCACG 57.519 37.500 0.00 0.00 36.32 4.94
369 372 0.032416 ACACCCTACCCGTATGAGCT 60.032 55.000 0.00 0.00 0.00 4.09
435 438 2.427232 TAGTACAAACGCAGACGCTT 57.573 45.000 0.00 0.00 45.53 4.68
528 531 1.734477 CAGTCCAGCGAGAACCACG 60.734 63.158 0.00 0.00 0.00 4.94
707 714 2.125832 TAGAAAGTTCGCCGCGGG 60.126 61.111 29.38 17.41 0.00 6.13
773 780 3.670377 GTTTGACAGGTGGCGGGC 61.670 66.667 0.00 0.00 0.00 6.13
782 789 1.597663 GTGTCGTGAAGGGTTTGACAG 59.402 52.381 0.00 0.00 39.96 3.51
797 805 2.494918 GGGATCTCGTGGGTGTCG 59.505 66.667 0.00 0.00 0.00 4.35
798 806 2.901042 GGGGATCTCGTGGGTGTC 59.099 66.667 0.00 0.00 0.00 3.67
1027 1037 2.127496 TCGTCGCGTTCGTCTGAC 60.127 61.111 20.51 0.00 36.96 3.51
1028 1038 2.172659 CTCGTCGCGTTCGTCTGA 59.827 61.111 20.51 6.07 36.96 3.27
1084 1099 2.809174 CCACTTGCGCATCGTCGA 60.809 61.111 12.75 0.00 0.00 4.20
1167 1182 1.139498 TGTTGAGGGGCAGGGATTGA 61.139 55.000 0.00 0.00 0.00 2.57
1168 1183 0.682209 CTGTTGAGGGGCAGGGATTG 60.682 60.000 0.00 0.00 0.00 2.67
1169 1184 1.142688 ACTGTTGAGGGGCAGGGATT 61.143 55.000 0.00 0.00 37.07 3.01
1170 1185 1.542375 ACTGTTGAGGGGCAGGGAT 60.542 57.895 0.00 0.00 37.07 3.85
1171 1186 2.121963 ACTGTTGAGGGGCAGGGA 60.122 61.111 0.00 0.00 37.07 4.20
1174 1189 0.321122 GACAGACTGTTGAGGGGCAG 60.321 60.000 10.01 0.00 38.58 4.85
1175 1190 1.754745 GACAGACTGTTGAGGGGCA 59.245 57.895 10.01 0.00 0.00 5.36
1176 1191 1.374758 CGACAGACTGTTGAGGGGC 60.375 63.158 16.76 0.00 33.58 5.80
1178 1193 1.374758 GGCGACAGACTGTTGAGGG 60.375 63.158 24.49 7.02 33.58 4.30
1180 1195 2.375766 GCGGCGACAGACTGTTGAG 61.376 63.158 24.49 17.55 33.58 3.02
1181 1196 2.355837 GCGGCGACAGACTGTTGA 60.356 61.111 24.49 0.00 33.58 3.18
1183 1198 3.923864 TGGCGGCGACAGACTGTT 61.924 61.111 13.60 0.00 0.00 3.16
1184 1199 4.664677 GTGGCGGCGACAGACTGT 62.665 66.667 19.67 8.12 0.00 3.55
1193 1208 3.976701 AAATCAGGAGGTGGCGGCG 62.977 63.158 0.51 0.51 0.00 6.46
1194 1209 1.657751 GAAAATCAGGAGGTGGCGGC 61.658 60.000 0.00 0.00 0.00 6.53
1195 1210 0.035056 AGAAAATCAGGAGGTGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
1197 1212 1.373570 CGAGAAAATCAGGAGGTGGC 58.626 55.000 0.00 0.00 0.00 5.01
1199 1214 2.028112 TCACCGAGAAAATCAGGAGGTG 60.028 50.000 5.45 5.45 46.36 4.00
1200 1215 2.257207 TCACCGAGAAAATCAGGAGGT 58.743 47.619 0.00 0.00 0.00 3.85
1201 1216 3.550437 ATCACCGAGAAAATCAGGAGG 57.450 47.619 0.00 0.00 0.00 4.30
1202 1217 6.512415 GCATAAATCACCGAGAAAATCAGGAG 60.512 42.308 0.00 0.00 0.00 3.69
1203 1218 5.296780 GCATAAATCACCGAGAAAATCAGGA 59.703 40.000 0.00 0.00 0.00 3.86
1207 1222 4.527564 CCGCATAAATCACCGAGAAAATC 58.472 43.478 0.00 0.00 0.00 2.17
1208 1223 3.315191 CCCGCATAAATCACCGAGAAAAT 59.685 43.478 0.00 0.00 0.00 1.82
1213 1232 1.502231 CTCCCGCATAAATCACCGAG 58.498 55.000 0.00 0.00 0.00 4.63
1214 1233 0.105964 CCTCCCGCATAAATCACCGA 59.894 55.000 0.00 0.00 0.00 4.69
1215 1234 0.884704 CCCTCCCGCATAAATCACCG 60.885 60.000 0.00 0.00 0.00 4.94
1231 1250 1.451387 CACCTAAATTCGGCGCCCT 60.451 57.895 23.46 2.24 0.00 5.19
1237 1256 1.379527 GAGCCACCACCTAAATTCGG 58.620 55.000 0.00 0.00 0.00 4.30
1252 1271 0.389948 AACCGAACAGATCACGAGCC 60.390 55.000 0.00 0.00 0.00 4.70
1284 1303 0.912487 ACCTGGGGCCAAATCTACGA 60.912 55.000 4.39 0.00 0.00 3.43
1303 1322 3.369471 GCTGTGGAACTGATAAGCTACCA 60.369 47.826 0.00 0.00 38.12 3.25
1326 1345 0.392461 AAAATCAAGCGGCTAGGCGA 60.392 50.000 39.13 20.74 38.18 5.54
1330 1349 3.516263 GCGAAAATCAAGCGGCTAG 57.484 52.632 1.35 0.00 0.00 3.42
1355 1374 1.407437 GGATTCAACCATCAGAGGCGT 60.407 52.381 0.00 0.00 0.00 5.68
1357 1376 1.685148 GGGATTCAACCATCAGAGGC 58.315 55.000 0.00 0.00 0.00 4.70
1367 1388 4.160635 CACGGCGCGGGATTCAAC 62.161 66.667 19.75 0.00 28.17 3.18
1379 1400 0.307760 CCAGGAATTAATCGCACGGC 59.692 55.000 0.00 0.00 0.00 5.68
1380 1401 1.330521 CACCAGGAATTAATCGCACGG 59.669 52.381 0.00 0.00 0.00 4.94
1381 1402 1.330521 CCACCAGGAATTAATCGCACG 59.669 52.381 0.00 0.00 36.89 5.34
1382 1403 1.676006 CCCACCAGGAATTAATCGCAC 59.324 52.381 0.00 0.00 38.24 5.34
1383 1404 1.409521 CCCCACCAGGAATTAATCGCA 60.410 52.381 0.00 0.00 38.24 5.10
1384 1405 1.133915 TCCCCACCAGGAATTAATCGC 60.134 52.381 0.00 0.00 38.24 4.58
1385 1406 3.290948 TTCCCCACCAGGAATTAATCG 57.709 47.619 0.00 0.00 41.08 3.34
1488 1509 1.183549 TCTAGAGCGGAAACTGGACC 58.816 55.000 0.00 0.00 0.00 4.46
1503 1524 2.402305 GCAACCAGATGCGAGATCTAG 58.598 52.381 0.00 0.00 36.45 2.43
1519 1540 2.527951 ATCGGGGCAGAGTCAGCAAC 62.528 60.000 9.93 1.61 0.00 4.17
1520 1541 2.293318 ATCGGGGCAGAGTCAGCAA 61.293 57.895 9.93 0.00 0.00 3.91
1592 1614 1.130561 GCCAGTAATGTCAAACTCGGC 59.869 52.381 12.23 12.23 34.83 5.54
1596 1618 5.408604 CGAAGTAAGCCAGTAATGTCAAACT 59.591 40.000 0.00 0.00 0.00 2.66
1600 1622 4.530710 ACGAAGTAAGCCAGTAATGTCA 57.469 40.909 0.00 0.00 41.94 3.58
1624 1646 8.990163 ATTTTAATAACCCACAACGGATCTAT 57.010 30.769 0.00 0.00 36.56 1.98
1655 1678 7.915397 CCACGACTTAATTAGCAGCATAATTTT 59.085 33.333 12.33 2.60 36.83 1.82
1761 1784 1.492720 GGCGCTAGATCAGTAGCAAC 58.507 55.000 7.64 5.50 44.98 4.17
1780 1803 3.112263 TCACTAAGAAGGGTATGGTGGG 58.888 50.000 0.00 0.00 0.00 4.61
1782 1805 5.823045 GGAATTCACTAAGAAGGGTATGGTG 59.177 44.000 7.93 0.00 40.15 4.17
1790 1813 6.672147 CAGTGTTTGGAATTCACTAAGAAGG 58.328 40.000 7.93 0.00 39.89 3.46
1814 1839 6.679843 GTGTAGATTACAGCAGATAGGTACC 58.320 44.000 2.73 2.73 39.77 3.34
1831 1864 6.262273 ACAAACAACTCGAATTTGGTGTAGAT 59.738 34.615 10.37 0.00 37.59 1.98
1832 1865 5.587043 ACAAACAACTCGAATTTGGTGTAGA 59.413 36.000 10.37 0.00 37.59 2.59
1841 1877 4.455877 GGGATCAGACAAACAACTCGAATT 59.544 41.667 0.00 0.00 0.00 2.17
1864 1900 1.400846 CTTAGCTGCAGGCACATGAAG 59.599 52.381 17.12 1.03 44.79 3.02
1865 1901 1.003464 TCTTAGCTGCAGGCACATGAA 59.997 47.619 17.12 0.00 44.79 2.57
1866 1902 0.614812 TCTTAGCTGCAGGCACATGA 59.385 50.000 17.12 5.35 44.79 3.07
1867 1903 1.400846 CTTCTTAGCTGCAGGCACATG 59.599 52.381 17.12 0.00 44.79 3.21
1923 1959 0.323629 CTACCTTGGGAAAGTCGCCA 59.676 55.000 0.00 0.00 0.00 5.69
2007 2043 1.019278 AGCGTTGGTCAGGCATTACG 61.019 55.000 0.00 0.00 38.87 3.18
2008 2044 0.447801 CAGCGTTGGTCAGGCATTAC 59.552 55.000 0.00 0.00 38.87 1.89
2241 2286 3.758300 GGTCAGAACCAAATGCAATACG 58.242 45.455 0.00 0.00 45.68 3.06
2254 2302 2.307686 TCCAAATACAGGGGGTCAGAAC 59.692 50.000 0.00 0.00 0.00 3.01
2313 2361 7.859325 TCTTATCCAAAGCCTACAAACATAC 57.141 36.000 0.00 0.00 0.00 2.39
2444 2492 5.049267 ACCAATTCAAAAAGCAATGACATGC 60.049 36.000 0.00 0.00 46.78 4.06
2447 2495 5.296283 CCAACCAATTCAAAAAGCAATGACA 59.704 36.000 0.00 0.00 0.00 3.58
2454 2502 4.213270 GCCTTACCAACCAATTCAAAAAGC 59.787 41.667 0.00 0.00 0.00 3.51
2482 2530 0.745845 AATCTGCATGAGGACACGGC 60.746 55.000 0.00 0.00 0.00 5.68
2483 2531 2.602257 TAATCTGCATGAGGACACGG 57.398 50.000 0.00 0.00 0.00 4.94
2484 2532 3.525537 ACTTAATCTGCATGAGGACACG 58.474 45.455 0.00 0.00 0.00 4.49
2485 2533 4.095483 CCAACTTAATCTGCATGAGGACAC 59.905 45.833 0.00 0.00 0.00 3.67
2491 2539 6.899089 TCCTTATCCAACTTAATCTGCATGA 58.101 36.000 0.00 0.00 0.00 3.07
2570 2618 4.813027 CAATGGTTCCAAGGTTCTTGATG 58.187 43.478 9.01 0.00 0.00 3.07
2573 2621 2.289010 GGCAATGGTTCCAAGGTTCTTG 60.289 50.000 0.00 1.00 0.00 3.02
2603 2651 5.818857 GTGGAAAACAACAGTACCTGAAGTA 59.181 40.000 0.00 0.00 35.18 2.24
2625 2673 4.120792 TCTTAGAGCAGAGCAATCAGTG 57.879 45.455 0.00 0.00 0.00 3.66
2628 2676 7.503549 TCAAATATCTTAGAGCAGAGCAATCA 58.496 34.615 0.00 0.00 0.00 2.57
2645 2693 8.937634 ATTTTGCAGTGGAGATTTCAAATATC 57.062 30.769 0.00 0.00 0.00 1.63
2656 2704 2.275134 TGCTGATTTTGCAGTGGAGA 57.725 45.000 0.00 0.00 38.17 3.71
2657 2705 3.587797 AATGCTGATTTTGCAGTGGAG 57.412 42.857 0.00 0.00 44.04 3.86
2687 2735 4.236935 GTGCAATATTCCACACCAACAAG 58.763 43.478 4.57 0.00 32.37 3.16
2947 2995 1.152756 AAAAGGACAAGGCAGCGGT 60.153 52.632 0.00 0.00 0.00 5.68
3077 3125 3.403038 GGGTTCATTCCATGTATCCTCG 58.597 50.000 0.00 0.00 0.00 4.63
3201 3250 9.562583 TTTAACAAAAGTAAACTGCACTAACAG 57.437 29.630 0.00 0.00 43.59 3.16
3340 3444 9.386010 AGCAACCGTATTAAACAAACTATATCA 57.614 29.630 0.00 0.00 0.00 2.15
3341 3445 9.646336 CAGCAACCGTATTAAACAAACTATATC 57.354 33.333 0.00 0.00 0.00 1.63
3342 3446 9.169592 ACAGCAACCGTATTAAACAAACTATAT 57.830 29.630 0.00 0.00 0.00 0.86
3343 3447 8.550710 ACAGCAACCGTATTAAACAAACTATA 57.449 30.769 0.00 0.00 0.00 1.31
3373 3480 3.967987 AGTACTTCTTCACCAAGTCCTGT 59.032 43.478 0.00 0.00 35.63 4.00
3559 3671 8.532186 TGTGGCTACAAAATAATGGATAATGT 57.468 30.769 0.00 0.00 32.88 2.71
3851 3963 6.542370 CCAAAGTCCTACAGAAAAAGACAAGA 59.458 38.462 0.00 0.00 0.00 3.02
3952 4064 0.465705 GATCATGTGGAGCCTTCGGA 59.534 55.000 0.00 0.00 0.00 4.55
3991 4103 3.560068 ACTTGAGGTTTGACTTGTTAGCG 59.440 43.478 0.00 0.00 0.00 4.26
4129 4242 6.371548 TGTTATAAGTTGATCTGTGCAAGTCC 59.628 38.462 0.00 0.00 0.00 3.85
4577 4695 8.147058 AGAACTACAGCATGAATAATACTGGAG 58.853 37.037 0.00 0.52 43.88 3.86
4608 4726 1.637553 AGATCAATTCTGTGCCCCAGT 59.362 47.619 0.00 0.00 42.19 4.00
4766 4891 2.346766 TTTTCTTGGTCAGCTGCTCA 57.653 45.000 9.47 6.79 0.00 4.26
4775 4900 7.923414 ACATACCTCATAGTTTTTCTTGGTC 57.077 36.000 0.00 0.00 0.00 4.02
4790 4915 4.161565 GGGACATCACAGTAACATACCTCA 59.838 45.833 0.00 0.00 0.00 3.86
4861 4986 6.560253 TTCAAAATTGGTCTCTGAGTAAGC 57.440 37.500 4.32 0.00 0.00 3.09
4864 4989 8.746052 TTTCTTTCAAAATTGGTCTCTGAGTA 57.254 30.769 4.32 0.00 0.00 2.59
4865 4990 7.645058 TTTCTTTCAAAATTGGTCTCTGAGT 57.355 32.000 4.32 0.00 0.00 3.41
4904 5051 9.770097 TCTGAATACACTGAATAGATCAAATCC 57.230 33.333 0.00 0.00 37.67 3.01
4917 5064 5.808366 AAACTGGTCTCTGAATACACTGA 57.192 39.130 0.00 0.00 0.00 3.41
4931 5078 4.451096 TGCGATCTTCAGTAAAAACTGGTC 59.549 41.667 5.74 0.25 38.23 4.02
4968 5115 9.495572 GGTCCTAAATCTCCTAAAATCTGTATG 57.504 37.037 0.00 0.00 0.00 2.39
4969 5116 8.661345 GGGTCCTAAATCTCCTAAAATCTGTAT 58.339 37.037 0.00 0.00 0.00 2.29
4970 5117 7.626084 TGGGTCCTAAATCTCCTAAAATCTGTA 59.374 37.037 0.00 0.00 0.00 2.74
4971 5118 6.447084 TGGGTCCTAAATCTCCTAAAATCTGT 59.553 38.462 0.00 0.00 0.00 3.41
4972 5119 6.900194 TGGGTCCTAAATCTCCTAAAATCTG 58.100 40.000 0.00 0.00 0.00 2.90
4973 5120 7.525158 TTGGGTCCTAAATCTCCTAAAATCT 57.475 36.000 0.00 0.00 0.00 2.40
4974 5121 8.768501 ATTTGGGTCCTAAATCTCCTAAAATC 57.231 34.615 7.37 0.00 34.97 2.17
5005 5156 5.595885 TGAAATCCAATCTTTGCGTTCAAA 58.404 33.333 0.00 0.00 39.67 2.69
5040 5191 5.622914 GCAGCATTGGAATTGACATTACTGT 60.623 40.000 0.00 0.00 38.67 3.55
5077 5228 9.575868 TTTATCCATGACTTAACAGGTGTTAAA 57.424 29.630 14.57 3.16 46.18 1.52
5078 5229 9.005777 GTTTATCCATGACTTAACAGGTGTTAA 57.994 33.333 13.34 13.34 45.18 2.01
5122 5273 1.142748 GGATCCAGCTCCTGACACG 59.857 63.158 6.95 0.00 32.44 4.49
5139 5290 0.895100 TGCCAAGCCTAGCACAAAGG 60.895 55.000 0.00 0.00 37.17 3.11
5167 5318 8.682710 GCTTCATACAGATTACCATTTAAACCA 58.317 33.333 0.00 0.00 0.00 3.67
5223 5375 4.020928 TCGGTGAAGTAGATAACCTGCAAA 60.021 41.667 0.00 0.00 0.00 3.68
5256 5408 4.030216 TGAGGTATTGCATCAGGTACTCA 58.970 43.478 0.00 0.00 34.60 3.41
5331 5483 0.603707 TGAGCTTTGAGTCCTTGCCG 60.604 55.000 0.00 0.00 0.00 5.69
5343 5495 2.039613 CTCCTTGAGGTCCTTGAGCTTT 59.960 50.000 0.00 0.00 40.67 3.51
5382 5534 1.376037 GGCCTTCTTCCACCAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
5556 5708 1.920325 CTCCAGGACCCTCTTGCCA 60.920 63.158 0.00 0.00 0.00 4.92
5637 5789 5.732661 AGGGGTATATAGGGAGACTCTACTC 59.267 48.000 1.74 0.00 36.31 2.59
5645 5797 6.264528 CAAAGATCAGGGGTATATAGGGAGA 58.735 44.000 0.00 0.00 0.00 3.71
5646 5798 5.104735 GCAAAGATCAGGGGTATATAGGGAG 60.105 48.000 0.00 0.00 0.00 4.30
5647 5799 4.783227 GCAAAGATCAGGGGTATATAGGGA 59.217 45.833 0.00 0.00 0.00 4.20
5648 5800 4.785376 AGCAAAGATCAGGGGTATATAGGG 59.215 45.833 0.00 0.00 0.00 3.53
5650 5802 7.009179 TGAAGCAAAGATCAGGGGTATATAG 57.991 40.000 0.00 0.00 0.00 1.31
5652 5804 5.912149 TGAAGCAAAGATCAGGGGTATAT 57.088 39.130 0.00 0.00 0.00 0.86
5653 5805 5.369404 TCATGAAGCAAAGATCAGGGGTATA 59.631 40.000 0.00 0.00 0.00 1.47
5654 5806 4.166725 TCATGAAGCAAAGATCAGGGGTAT 59.833 41.667 0.00 0.00 0.00 2.73
5656 5808 2.309755 TCATGAAGCAAAGATCAGGGGT 59.690 45.455 0.00 0.00 0.00 4.95
5657 5809 3.008835 TCATGAAGCAAAGATCAGGGG 57.991 47.619 0.00 0.00 0.00 4.79
5658 5810 4.736759 GCATTCATGAAGCAAAGATCAGGG 60.737 45.833 14.54 0.00 0.00 4.45
5659 5811 4.360563 GCATTCATGAAGCAAAGATCAGG 58.639 43.478 14.54 0.00 0.00 3.86
5660 5812 4.360563 GGCATTCATGAAGCAAAGATCAG 58.639 43.478 22.72 4.16 0.00 2.90
5661 5813 3.181494 CGGCATTCATGAAGCAAAGATCA 60.181 43.478 22.72 0.00 0.00 2.92
5665 5820 1.917273 CCGGCATTCATGAAGCAAAG 58.083 50.000 22.72 15.84 0.00 2.77
5672 5827 2.829914 GGCTGCCGGCATTCATGA 60.830 61.111 32.87 4.54 44.01 3.07
5673 5828 4.260355 CGGCTGCCGGCATTCATG 62.260 66.667 32.87 19.50 44.15 3.07
5684 5839 1.586422 TTAGCATCATCTTCGGCTGC 58.414 50.000 0.00 0.00 37.17 5.25
5685 5840 4.534168 CAATTTAGCATCATCTTCGGCTG 58.466 43.478 0.00 0.00 37.17 4.85
5689 5844 4.534168 CCAGCAATTTAGCATCATCTTCG 58.466 43.478 0.00 0.00 36.85 3.79
5691 5846 3.702548 TGCCAGCAATTTAGCATCATCTT 59.297 39.130 0.00 0.00 36.85 2.40
5692 5847 3.067742 GTGCCAGCAATTTAGCATCATCT 59.932 43.478 0.00 0.00 37.60 2.90
5693 5848 3.181484 TGTGCCAGCAATTTAGCATCATC 60.181 43.478 0.00 0.00 37.60 2.92
5694 5849 2.761767 TGTGCCAGCAATTTAGCATCAT 59.238 40.909 0.00 0.00 37.60 2.45
5695 5850 2.169330 TGTGCCAGCAATTTAGCATCA 58.831 42.857 0.00 0.00 37.60 3.07
5697 5852 2.498481 ACATGTGCCAGCAATTTAGCAT 59.502 40.909 0.00 0.00 37.60 3.79
5698 5853 1.894466 ACATGTGCCAGCAATTTAGCA 59.106 42.857 0.00 0.00 36.85 3.49
5699 5854 2.264813 CACATGTGCCAGCAATTTAGC 58.735 47.619 13.94 0.00 0.00 3.09
5702 5857 2.157834 CACACATGTGCCAGCAATTT 57.842 45.000 25.68 0.00 39.39 1.82
5714 5869 0.450983 TGCACACACACACACACATG 59.549 50.000 0.00 0.00 0.00 3.21
5729 5891 2.125753 CAGACCCTCGCTCTGCAC 60.126 66.667 0.00 0.00 0.00 4.57
5743 5905 2.568612 CTCGCCGTCTGCTTCAGA 59.431 61.111 0.00 0.00 38.25 3.27
5855 6017 3.319198 GTCGGGGCTCAGGTCCAA 61.319 66.667 0.00 0.00 39.39 3.53
5915 6077 3.333804 CCTTTGCTGACTCCTTCTCTTC 58.666 50.000 0.00 0.00 0.00 2.87
5916 6078 2.551938 GCCTTTGCTGACTCCTTCTCTT 60.552 50.000 0.00 0.00 33.53 2.85
5917 6079 1.003003 GCCTTTGCTGACTCCTTCTCT 59.997 52.381 0.00 0.00 33.53 3.10
5929 6094 4.416738 GGCTCCTCCGCCTTTGCT 62.417 66.667 0.00 0.00 46.63 3.91
5988 6153 1.656652 AAATGGGCGATGAGAAGACG 58.343 50.000 0.00 0.00 0.00 4.18
6063 6233 4.493286 CGTTTTCGCGCGGTAAAA 57.507 50.000 31.69 25.51 36.22 1.52
6089 6263 4.509970 CACTGACAAAAACCTCGTATCACA 59.490 41.667 0.00 0.00 0.00 3.58
6188 6362 0.106918 ACAAAAGGGCACTTCGGACA 60.107 50.000 0.00 0.00 35.41 4.02
6197 6371 1.680735 CAGCAAGTGTACAAAAGGGCA 59.319 47.619 0.00 0.00 0.00 5.36
6209 6391 3.119173 TGAGGAAACCAAAACAGCAAGTG 60.119 43.478 0.00 0.00 0.00 3.16
6231 6413 4.136796 TCTGTAACTACGTACACCACTGT 58.863 43.478 0.00 0.00 30.81 3.55
6285 6467 5.295292 CCTGCATGGATAAAACTCAGTACAG 59.705 44.000 0.00 0.00 38.35 2.74
6286 6468 5.185454 CCTGCATGGATAAAACTCAGTACA 58.815 41.667 0.00 0.00 38.35 2.90
6291 6473 3.737559 ACCCTGCATGGATAAAACTCA 57.262 42.857 15.66 0.00 38.35 3.41
6300 6482 0.846015 CCCTCATAACCCTGCATGGA 59.154 55.000 15.66 0.00 38.35 3.41
6302 6484 2.439507 ACTACCCTCATAACCCTGCATG 59.560 50.000 0.00 0.00 0.00 4.06
6320 6502 3.975312 TGGTAACTCAACCTTGGGAACTA 59.025 43.478 0.00 0.00 40.44 2.24
6321 6503 2.781174 TGGTAACTCAACCTTGGGAACT 59.219 45.455 0.00 0.00 40.44 3.01
6322 6504 2.882761 GTGGTAACTCAACCTTGGGAAC 59.117 50.000 0.00 0.00 40.44 3.62
6323 6505 2.485835 CGTGGTAACTCAACCTTGGGAA 60.486 50.000 0.00 0.00 40.44 3.97
6324 6506 1.071071 CGTGGTAACTCAACCTTGGGA 59.929 52.381 0.00 0.00 40.44 4.37
6325 6507 1.519408 CGTGGTAACTCAACCTTGGG 58.481 55.000 0.00 0.00 40.44 4.12
6326 6508 0.872388 GCGTGGTAACTCAACCTTGG 59.128 55.000 0.00 0.00 40.44 3.61
6327 6509 0.511221 CGCGTGGTAACTCAACCTTG 59.489 55.000 0.00 0.00 40.44 3.61
6328 6510 0.601841 CCGCGTGGTAACTCAACCTT 60.602 55.000 6.91 0.00 40.44 3.50
6329 6511 1.005394 CCGCGTGGTAACTCAACCT 60.005 57.895 6.91 0.00 40.44 3.50
6330 6512 2.674084 GCCGCGTGGTAACTCAACC 61.674 63.158 17.91 0.00 40.19 3.77
6331 6513 1.500512 TTGCCGCGTGGTAACTCAAC 61.501 55.000 14.95 0.00 34.64 3.18
6332 6514 1.225376 CTTGCCGCGTGGTAACTCAA 61.225 55.000 14.95 9.41 34.64 3.02
6333 6515 1.666553 CTTGCCGCGTGGTAACTCA 60.667 57.895 14.95 0.88 34.64 3.41
6345 6527 3.799755 GGCTAACCACGCTTGCCG 61.800 66.667 0.00 0.00 44.21 5.69
6357 6539 5.694231 TTGAGAATATACGTAGCGGCTAA 57.306 39.130 11.98 0.00 0.00 3.09
6362 6544 4.383052 CCTGCTTTGAGAATATACGTAGCG 59.617 45.833 0.08 0.00 0.00 4.26
6365 6547 5.529791 GCTCCTGCTTTGAGAATATACGTA 58.470 41.667 0.00 0.00 36.03 3.57
6368 6550 4.621991 TCGCTCCTGCTTTGAGAATATAC 58.378 43.478 2.50 0.00 36.97 1.47
6369 6551 4.342378 ACTCGCTCCTGCTTTGAGAATATA 59.658 41.667 2.50 0.00 36.97 0.86
6370 6552 3.133721 ACTCGCTCCTGCTTTGAGAATAT 59.866 43.478 2.50 0.00 36.97 1.28
6371 6553 2.497675 ACTCGCTCCTGCTTTGAGAATA 59.502 45.455 2.50 0.00 36.97 1.75
6372 6554 1.277557 ACTCGCTCCTGCTTTGAGAAT 59.722 47.619 2.50 0.00 36.97 2.40
6373 6555 0.681733 ACTCGCTCCTGCTTTGAGAA 59.318 50.000 2.50 0.00 36.97 2.87
6374 6556 0.681733 AACTCGCTCCTGCTTTGAGA 59.318 50.000 2.50 0.00 36.97 3.27
6375 6557 1.074752 GAACTCGCTCCTGCTTTGAG 58.925 55.000 0.00 0.00 36.97 3.02
6376 6558 0.320771 GGAACTCGCTCCTGCTTTGA 60.321 55.000 0.00 0.00 36.97 2.69
6377 6559 0.603707 TGGAACTCGCTCCTGCTTTG 60.604 55.000 0.00 0.00 36.35 2.77
6380 6562 2.659610 GTGGAACTCGCTCCTGCT 59.340 61.111 0.00 0.00 36.35 4.24
6392 6574 1.064017 AGCACAAACTCCCAAGTGGAA 60.064 47.619 0.00 0.00 44.57 3.53
6393 6575 0.550914 AGCACAAACTCCCAAGTGGA 59.449 50.000 0.00 0.00 42.41 4.02
6394 6576 0.670162 CAGCACAAACTCCCAAGTGG 59.330 55.000 0.00 0.00 35.36 4.00
6395 6577 0.031178 GCAGCACAAACTCCCAAGTG 59.969 55.000 0.00 0.00 35.36 3.16
6396 6578 0.106519 AGCAGCACAAACTCCCAAGT 60.107 50.000 0.00 0.00 37.32 3.16
6397 6579 0.313043 CAGCAGCACAAACTCCCAAG 59.687 55.000 0.00 0.00 0.00 3.61
6398 6580 0.106769 TCAGCAGCACAAACTCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
6399 6581 0.106769 TTCAGCAGCACAAACTCCCA 60.107 50.000 0.00 0.00 0.00 4.37
6415 6631 3.973206 TCCAGTCTAAAATCGGCTTCA 57.027 42.857 0.00 0.00 0.00 3.02
6419 6635 3.596214 TCTGTTCCAGTCTAAAATCGGC 58.404 45.455 0.00 0.00 32.61 5.54
6420 6636 6.403636 CCATTTCTGTTCCAGTCTAAAATCGG 60.404 42.308 0.00 0.00 32.61 4.18
6428 6644 5.246981 TCAATCCATTTCTGTTCCAGTCT 57.753 39.130 0.00 0.00 32.61 3.24
6436 6652 7.124599 TCCAGCAAATAATCAATCCATTTCTGT 59.875 33.333 0.00 0.00 0.00 3.41
6438 6654 7.343833 ACTCCAGCAAATAATCAATCCATTTCT 59.656 33.333 0.00 0.00 0.00 2.52
6449 6665 3.381590 GGGACCAACTCCAGCAAATAATC 59.618 47.826 0.00 0.00 41.63 1.75
6450 6666 3.245586 TGGGACCAACTCCAGCAAATAAT 60.246 43.478 0.00 0.00 41.63 1.28
6451 6667 2.109128 TGGGACCAACTCCAGCAAATAA 59.891 45.455 0.00 0.00 41.63 1.40
6452 6668 1.707989 TGGGACCAACTCCAGCAAATA 59.292 47.619 0.00 0.00 41.63 1.40
6453 6669 0.482446 TGGGACCAACTCCAGCAAAT 59.518 50.000 0.00 0.00 41.63 2.32
6454 6670 0.482446 ATGGGACCAACTCCAGCAAA 59.518 50.000 0.00 0.00 41.63 3.68
6455 6671 0.482446 AATGGGACCAACTCCAGCAA 59.518 50.000 0.00 0.00 41.63 3.91
6456 6672 0.482446 AAATGGGACCAACTCCAGCA 59.518 50.000 0.00 0.00 41.63 4.41
6457 6673 1.632589 AAAATGGGACCAACTCCAGC 58.367 50.000 0.00 0.00 41.63 4.85
6458 6674 4.301072 TCTAAAATGGGACCAACTCCAG 57.699 45.455 0.00 0.00 41.63 3.86
6459 6675 4.290985 TGATCTAAAATGGGACCAACTCCA 59.709 41.667 0.00 0.00 41.63 3.86
6460 6676 4.855340 TGATCTAAAATGGGACCAACTCC 58.145 43.478 0.00 0.00 38.55 3.85
6461 6677 5.745227 TCTGATCTAAAATGGGACCAACTC 58.255 41.667 0.00 0.00 0.00 3.01
6462 6678 5.779241 TCTGATCTAAAATGGGACCAACT 57.221 39.130 0.00 0.00 0.00 3.16
6463 6679 5.946377 AGTTCTGATCTAAAATGGGACCAAC 59.054 40.000 0.00 0.00 0.00 3.77
6464 6680 5.945784 CAGTTCTGATCTAAAATGGGACCAA 59.054 40.000 0.00 0.00 0.00 3.67
6465 6681 5.014123 ACAGTTCTGATCTAAAATGGGACCA 59.986 40.000 6.83 0.00 0.00 4.02
6466 6682 5.501156 ACAGTTCTGATCTAAAATGGGACC 58.499 41.667 6.83 0.00 0.00 4.46
6467 6683 6.410540 AGACAGTTCTGATCTAAAATGGGAC 58.589 40.000 6.83 4.67 0.00 4.46
6468 6684 6.627087 AGACAGTTCTGATCTAAAATGGGA 57.373 37.500 6.83 0.00 0.00 4.37
6469 6685 7.989741 ACATAGACAGTTCTGATCTAAAATGGG 59.010 37.037 6.83 1.57 32.75 4.00
6470 6686 8.824781 CACATAGACAGTTCTGATCTAAAATGG 58.175 37.037 6.83 3.51 32.75 3.16
6471 6687 9.591792 TCACATAGACAGTTCTGATCTAAAATG 57.408 33.333 6.83 0.57 32.75 2.32
6474 6690 9.591792 CAATCACATAGACAGTTCTGATCTAAA 57.408 33.333 6.83 0.00 32.75 1.85
6475 6691 8.971073 TCAATCACATAGACAGTTCTGATCTAA 58.029 33.333 6.83 0.00 32.75 2.10
6476 6692 8.525290 TCAATCACATAGACAGTTCTGATCTA 57.475 34.615 6.83 9.72 32.75 1.98
6477 6693 7.415592 TCAATCACATAGACAGTTCTGATCT 57.584 36.000 6.83 8.08 32.75 2.75
6478 6694 7.710044 ACATCAATCACATAGACAGTTCTGATC 59.290 37.037 6.83 1.44 32.75 2.92
6479 6695 7.494952 CACATCAATCACATAGACAGTTCTGAT 59.505 37.037 6.83 0.00 32.75 2.90
6480 6696 6.815142 CACATCAATCACATAGACAGTTCTGA 59.185 38.462 6.83 0.00 32.75 3.27
6481 6697 6.592994 ACACATCAATCACATAGACAGTTCTG 59.407 38.462 0.00 0.00 32.75 3.02
6482 6698 6.592994 CACACATCAATCACATAGACAGTTCT 59.407 38.462 0.00 0.00 35.66 3.01
6483 6699 6.369890 ACACACATCAATCACATAGACAGTTC 59.630 38.462 0.00 0.00 0.00 3.01
6484 6700 6.233434 ACACACATCAATCACATAGACAGTT 58.767 36.000 0.00 0.00 0.00 3.16
6485 6701 5.798132 ACACACATCAATCACATAGACAGT 58.202 37.500 0.00 0.00 0.00 3.55
6486 6702 6.035758 CAGACACACATCAATCACATAGACAG 59.964 42.308 0.00 0.00 0.00 3.51
6487 6703 5.870978 CAGACACACATCAATCACATAGACA 59.129 40.000 0.00 0.00 0.00 3.41
6488 6704 6.101997 TCAGACACACATCAATCACATAGAC 58.898 40.000 0.00 0.00 0.00 2.59
6489 6705 6.284891 TCAGACACACATCAATCACATAGA 57.715 37.500 0.00 0.00 0.00 1.98
6490 6706 6.815142 TCTTCAGACACACATCAATCACATAG 59.185 38.462 0.00 0.00 0.00 2.23
6491 6707 6.700352 TCTTCAGACACACATCAATCACATA 58.300 36.000 0.00 0.00 0.00 2.29
6492 6708 5.554070 TCTTCAGACACACATCAATCACAT 58.446 37.500 0.00 0.00 0.00 3.21
6493 6709 4.959723 TCTTCAGACACACATCAATCACA 58.040 39.130 0.00 0.00 0.00 3.58
6494 6710 4.391216 CCTCTTCAGACACACATCAATCAC 59.609 45.833 0.00 0.00 0.00 3.06
6495 6711 4.040829 ACCTCTTCAGACACACATCAATCA 59.959 41.667 0.00 0.00 0.00 2.57
6496 6712 4.391216 CACCTCTTCAGACACACATCAATC 59.609 45.833 0.00 0.00 0.00 2.67
6497 6713 4.321718 CACCTCTTCAGACACACATCAAT 58.678 43.478 0.00 0.00 0.00 2.57
6498 6714 3.494924 CCACCTCTTCAGACACACATCAA 60.495 47.826 0.00 0.00 0.00 2.57
6499 6715 2.037641 CCACCTCTTCAGACACACATCA 59.962 50.000 0.00 0.00 0.00 3.07
6500 6716 2.613977 CCCACCTCTTCAGACACACATC 60.614 54.545 0.00 0.00 0.00 3.06
6501 6717 1.349026 CCCACCTCTTCAGACACACAT 59.651 52.381 0.00 0.00 0.00 3.21
6502 6718 0.758734 CCCACCTCTTCAGACACACA 59.241 55.000 0.00 0.00 0.00 3.72
6503 6719 1.048601 TCCCACCTCTTCAGACACAC 58.951 55.000 0.00 0.00 0.00 3.82
6504 6720 1.801242 TTCCCACCTCTTCAGACACA 58.199 50.000 0.00 0.00 0.00 3.72
6505 6721 2.930826 TTTCCCACCTCTTCAGACAC 57.069 50.000 0.00 0.00 0.00 3.67
6506 6722 3.435026 CCTTTTTCCCACCTCTTCAGACA 60.435 47.826 0.00 0.00 0.00 3.41
6507 6723 3.149981 CCTTTTTCCCACCTCTTCAGAC 58.850 50.000 0.00 0.00 0.00 3.51
6508 6724 2.108250 CCCTTTTTCCCACCTCTTCAGA 59.892 50.000 0.00 0.00 0.00 3.27
6509 6725 2.519013 CCCTTTTTCCCACCTCTTCAG 58.481 52.381 0.00 0.00 0.00 3.02
6513 6729 0.404346 TCCCCCTTTTTCCCACCTCT 60.404 55.000 0.00 0.00 0.00 3.69
6522 6738 5.365605 ACGATTTTCTTTCTTCCCCCTTTTT 59.634 36.000 0.00 0.00 0.00 1.94
6523 6739 4.899457 ACGATTTTCTTTCTTCCCCCTTTT 59.101 37.500 0.00 0.00 0.00 2.27
6529 6745 3.418047 TGGGACGATTTTCTTTCTTCCC 58.582 45.455 8.00 8.00 46.75 3.97
6547 6772 4.733542 AATCCCACGGGCGTTGGG 62.734 66.667 14.51 14.51 44.06 4.12
6557 6782 1.598701 GCAAGTCCCAGCAATCCCAC 61.599 60.000 0.00 0.00 0.00 4.61
6559 6784 2.054453 GGCAAGTCCCAGCAATCCC 61.054 63.158 0.00 0.00 0.00 3.85
6560 6785 1.304381 TGGCAAGTCCCAGCAATCC 60.304 57.895 0.00 0.00 0.00 3.01
6572 6797 0.236711 CTGAAGTGCGAAGTGGCAAG 59.763 55.000 0.00 0.00 45.93 4.01
6573 6798 0.179059 TCTGAAGTGCGAAGTGGCAA 60.179 50.000 0.00 0.00 45.93 4.52
6574 6799 0.601046 CTCTGAAGTGCGAAGTGGCA 60.601 55.000 0.00 0.00 41.45 4.92
6575 6800 1.905922 GCTCTGAAGTGCGAAGTGGC 61.906 60.000 0.00 0.00 0.00 5.01
6576 6801 2.157421 GCTCTGAAGTGCGAAGTGG 58.843 57.895 0.00 0.00 0.00 4.00
6633 6864 2.747460 TGCCACTGCAAGATCGGC 60.747 61.111 5.57 5.57 46.66 5.54
6661 6892 2.040359 GAGGGGGAGGGGAAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
6662 6893 3.707189 GGAGGGGGAGGGGAAGGA 61.707 72.222 0.00 0.00 0.00 3.36
6663 6894 3.711782 AGGAGGGGGAGGGGAAGG 61.712 72.222 0.00 0.00 0.00 3.46
6664 6895 2.040359 GAGGAGGGGGAGGGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
6665 6896 3.707189 GGAGGAGGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
6666 6897 4.761304 AGGAGGAGGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
6667 6898 4.179599 GAGGAGGAGGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
6668 6899 1.705450 TAGAGGAGGAGGGGGAGGG 60.705 68.421 0.00 0.00 0.00 4.30
6669 6900 0.703056 TCTAGAGGAGGAGGGGGAGG 60.703 65.000 0.00 0.00 0.00 4.30
6670 6901 1.357761 GATCTAGAGGAGGAGGGGGAG 59.642 61.905 0.00 0.00 0.00 4.30
6671 6902 1.462426 GATCTAGAGGAGGAGGGGGA 58.538 60.000 0.00 0.00 0.00 4.81
6672 6903 0.411848 GGATCTAGAGGAGGAGGGGG 59.588 65.000 0.00 0.00 0.00 5.40
6675 6906 0.111446 TGCGGATCTAGAGGAGGAGG 59.889 60.000 0.00 0.00 0.00 4.30
6685 6916 0.389391 GCTGCTTACCTGCGGATCTA 59.611 55.000 0.00 0.00 41.56 1.98
6686 6917 1.144936 GCTGCTTACCTGCGGATCT 59.855 57.895 0.00 0.00 41.56 2.75
6687 6918 1.153369 TGCTGCTTACCTGCGGATC 60.153 57.895 0.00 0.00 41.56 3.36
6688 6919 1.450312 GTGCTGCTTACCTGCGGAT 60.450 57.895 0.00 0.00 41.56 4.18
6691 6922 1.630244 GACAGTGCTGCTTACCTGCG 61.630 60.000 0.00 0.00 40.88 5.18
6707 6938 1.413662 GGAGGGGAGAGGATGATGACA 60.414 57.143 0.00 0.00 0.00 3.58
6708 6939 1.132881 AGGAGGGGAGAGGATGATGAC 60.133 57.143 0.00 0.00 0.00 3.06
6709 6940 1.148867 GAGGAGGGGAGAGGATGATGA 59.851 57.143 0.00 0.00 0.00 2.92
6713 6944 1.422531 CAAGAGGAGGGGAGAGGATG 58.577 60.000 0.00 0.00 0.00 3.51
6714 6945 0.267356 CCAAGAGGAGGGGAGAGGAT 59.733 60.000 0.00 0.00 36.89 3.24
6723 6965 1.352083 TCAGGAACACCAAGAGGAGG 58.648 55.000 0.00 0.00 38.69 4.30
6728 6970 3.056107 CCGACTAATCAGGAACACCAAGA 60.056 47.826 0.00 0.00 0.00 3.02
6731 6973 2.253610 ACCGACTAATCAGGAACACCA 58.746 47.619 0.00 0.00 0.00 4.17
6736 6978 3.835978 TGGAGAAACCGACTAATCAGGAA 59.164 43.478 0.00 0.00 42.61 3.36
6743 6985 5.240121 GGTGTTAATGGAGAAACCGACTAA 58.760 41.667 0.00 0.00 42.61 2.24
6744 6986 4.322953 GGGTGTTAATGGAGAAACCGACTA 60.323 45.833 0.00 0.00 42.61 2.59
6745 6987 3.558533 GGGTGTTAATGGAGAAACCGACT 60.559 47.826 0.00 0.00 42.61 4.18
6746 6988 2.745821 GGGTGTTAATGGAGAAACCGAC 59.254 50.000 0.00 0.00 42.61 4.79
6748 6990 2.486592 GTGGGTGTTAATGGAGAAACCG 59.513 50.000 0.00 0.00 42.61 4.44
6755 6997 0.406361 GTGGGGTGGGTGTTAATGGA 59.594 55.000 0.00 0.00 0.00 3.41
6758 7000 0.702316 GAGGTGGGGTGGGTGTTAAT 59.298 55.000 0.00 0.00 0.00 1.40
6759 7001 1.428718 GGAGGTGGGGTGGGTGTTAA 61.429 60.000 0.00 0.00 0.00 2.01
6761 7003 3.182996 GGAGGTGGGGTGGGTGTT 61.183 66.667 0.00 0.00 0.00 3.32
6768 7010 4.938756 TGCAAGGGGAGGTGGGGT 62.939 66.667 0.00 0.00 0.00 4.95
6769 7011 4.052518 CTGCAAGGGGAGGTGGGG 62.053 72.222 0.00 0.00 0.00 4.96
6773 7015 4.357279 GCAGCTGCAAGGGGAGGT 62.357 66.667 33.36 0.00 44.53 3.85
6826 7068 2.359230 GTGGTGGTGCTCCTGCTC 60.359 66.667 6.34 0.00 40.48 4.26
6827 7069 3.958860 GGTGGTGGTGCTCCTGCT 61.959 66.667 6.34 0.00 40.48 4.24
6828 7070 3.909086 GAGGTGGTGGTGCTCCTGC 62.909 68.421 6.34 0.00 40.20 4.85
6829 7071 2.348998 GAGGTGGTGGTGCTCCTG 59.651 66.667 6.34 0.00 34.23 3.86
6830 7072 3.314331 CGAGGTGGTGGTGCTCCT 61.314 66.667 6.34 0.00 34.23 3.69
6831 7073 4.394712 CCGAGGTGGTGGTGCTCC 62.395 72.222 0.00 0.00 0.00 4.70
6879 7124 2.496828 AAGTTACCGCGGGAAGGTCG 62.497 60.000 31.76 0.80 42.81 4.79
6898 7143 3.864983 GAGGAGGTGGTGGTGGGGA 62.865 68.421 0.00 0.00 0.00 4.81
6902 7147 3.072476 CCTGAGGAGGTGGTGGTG 58.928 66.667 0.00 0.00 34.16 4.17
6903 7148 2.930562 GCCTGAGGAGGTGGTGGT 60.931 66.667 0.65 0.00 42.15 4.16
6906 7151 1.462238 ACAAGCCTGAGGAGGTGGT 60.462 57.895 0.65 0.00 42.15 4.16
6909 7154 1.757306 CACACAAGCCTGAGGAGGT 59.243 57.895 0.65 0.00 42.15 3.85
6917 7162 0.179018 GGAGAACACCACACAAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
6918 7163 0.465460 TGGAGAACACCACACAAGCC 60.465 55.000 0.00 0.00 34.77 4.35
6919 7164 1.609208 ATGGAGAACACCACACAAGC 58.391 50.000 0.00 0.00 43.03 4.01
6920 7165 4.271696 TCTATGGAGAACACCACACAAG 57.728 45.455 0.00 0.00 43.03 3.16
6921 7166 4.532126 AGATCTATGGAGAACACCACACAA 59.468 41.667 0.00 0.00 43.03 3.33
6922 7167 4.081476 CAGATCTATGGAGAACACCACACA 60.081 45.833 0.00 0.00 43.03 3.72
6923 7168 4.437239 CAGATCTATGGAGAACACCACAC 58.563 47.826 0.00 0.00 43.03 3.82
6924 7169 3.118629 GCAGATCTATGGAGAACACCACA 60.119 47.826 0.00 0.00 43.03 4.17
6925 7170 3.118629 TGCAGATCTATGGAGAACACCAC 60.119 47.826 0.00 0.00 43.03 4.16
6926 7171 3.106827 TGCAGATCTATGGAGAACACCA 58.893 45.455 0.00 0.00 44.41 4.17
6927 7172 3.133721 AGTGCAGATCTATGGAGAACACC 59.866 47.826 0.00 0.00 34.61 4.16
6928 7173 4.399004 AGTGCAGATCTATGGAGAACAC 57.601 45.455 0.00 0.00 34.61 3.32
6929 7174 4.713814 AGAAGTGCAGATCTATGGAGAACA 59.286 41.667 0.00 0.00 34.61 3.18
6930 7175 5.049167 CAGAAGTGCAGATCTATGGAGAAC 58.951 45.833 0.00 0.00 34.61 3.01
6931 7176 4.100653 CCAGAAGTGCAGATCTATGGAGAA 59.899 45.833 0.00 0.00 34.61 2.87
6932 7177 3.640498 CCAGAAGTGCAGATCTATGGAGA 59.360 47.826 0.00 0.00 35.71 3.71
6933 7178 3.244146 CCCAGAAGTGCAGATCTATGGAG 60.244 52.174 0.00 0.00 0.00 3.86
6934 7179 2.702478 CCCAGAAGTGCAGATCTATGGA 59.298 50.000 0.00 0.00 0.00 3.41
6935 7180 2.224475 CCCCAGAAGTGCAGATCTATGG 60.224 54.545 0.00 5.48 0.00 2.74
6936 7181 2.809665 GCCCCAGAAGTGCAGATCTATG 60.810 54.545 0.00 0.00 0.00 2.23
6937 7182 1.419387 GCCCCAGAAGTGCAGATCTAT 59.581 52.381 0.00 0.00 0.00 1.98
6938 7183 0.833287 GCCCCAGAAGTGCAGATCTA 59.167 55.000 0.00 0.00 0.00 1.98
6939 7184 1.606531 GCCCCAGAAGTGCAGATCT 59.393 57.895 0.00 0.00 0.00 2.75
6940 7185 1.817099 CGCCCCAGAAGTGCAGATC 60.817 63.158 0.00 0.00 0.00 2.75
6941 7186 1.841302 TTCGCCCCAGAAGTGCAGAT 61.841 55.000 0.00 0.00 0.00 2.90
6942 7187 2.050836 TTTCGCCCCAGAAGTGCAGA 62.051 55.000 0.00 0.00 0.00 4.26
6943 7188 1.172180 TTTTCGCCCCAGAAGTGCAG 61.172 55.000 0.00 0.00 0.00 4.41
6944 7189 0.753479 TTTTTCGCCCCAGAAGTGCA 60.753 50.000 0.00 0.00 0.00 4.57
6945 7190 0.318699 GTTTTTCGCCCCAGAAGTGC 60.319 55.000 0.00 0.00 0.00 4.40
6946 7191 1.318576 AGTTTTTCGCCCCAGAAGTG 58.681 50.000 0.00 0.00 0.00 3.16
6947 7192 2.105993 ACTAGTTTTTCGCCCCAGAAGT 59.894 45.455 0.00 0.00 0.00 3.01
6948 7193 2.484264 CACTAGTTTTTCGCCCCAGAAG 59.516 50.000 0.00 0.00 0.00 2.85
6949 7194 2.158726 ACACTAGTTTTTCGCCCCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
6950 7195 1.418637 ACACTAGTTTTTCGCCCCAGA 59.581 47.619 0.00 0.00 0.00 3.86
6951 7196 1.892209 ACACTAGTTTTTCGCCCCAG 58.108 50.000 0.00 0.00 0.00 4.45
6952 7197 2.351706 AACACTAGTTTTTCGCCCCA 57.648 45.000 0.00 0.00 33.11 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.