Multiple sequence alignment - TraesCS7D01G517700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G517700 chr7D 100.000 4609 0 0 1 4609 616505728 616501120 0.000000e+00 8512.0
1 TraesCS7D01G517700 chr7D 87.213 1087 117 7 1979 3063 616412337 616411271 0.000000e+00 1218.0
2 TraesCS7D01G517700 chr7D 78.248 993 189 24 2205 3184 617028016 617028994 3.050000e-171 612.0
3 TraesCS7D01G517700 chr7D 77.553 989 194 18 2205 3184 616276217 616275248 5.170000e-159 571.0
4 TraesCS7D01G517700 chr7D 93.450 229 15 0 4381 4609 616101743 616101515 1.590000e-89 340.0
5 TraesCS7D01G517700 chr7D 87.943 141 15 2 1984 2123 588077924 588077785 1.030000e-36 165.0
6 TraesCS7D01G517700 chr7D 87.023 131 17 0 1982 2112 616276404 616276274 1.030000e-31 148.0
7 TraesCS7D01G517700 chr7D 79.310 174 32 4 3443 3614 617011981 617012152 8.100000e-23 119.0
8 TraesCS7D01G517700 chr7D 80.315 127 16 5 1238 1364 616420102 616419985 2.280000e-13 87.9
9 TraesCS7D01G517700 chr7B 87.812 2962 226 78 748 3649 709608095 709605209 0.000000e+00 3345.0
10 TraesCS7D01G517700 chr7B 80.910 1011 169 19 2206 3205 709603151 709602154 0.000000e+00 776.0
11 TraesCS7D01G517700 chr7B 77.143 945 185 21 2208 3142 709530403 709529480 1.900000e-143 520.0
12 TraesCS7D01G517700 chr7B 86.830 448 29 17 1 429 709608766 709608330 1.500000e-129 473.0
13 TraesCS7D01G517700 chr7B 82.222 405 68 2 2205 2609 660641658 660641258 3.410000e-91 346.0
14 TraesCS7D01G517700 chr7B 93.013 229 16 0 4381 4609 244599746 244599518 7.390000e-88 335.0
15 TraesCS7D01G517700 chr7A 93.708 2098 126 4 1889 3984 709391843 709389750 0.000000e+00 3138.0
16 TraesCS7D01G517700 chr7A 93.916 526 26 4 1 524 709405197 709404676 0.000000e+00 789.0
17 TraesCS7D01G517700 chr7A 75.140 1432 288 57 2205 3610 709755487 709756876 1.100000e-170 610.0
18 TraesCS7D01G517700 chr7A 88.747 391 22 9 3983 4354 709389669 709389282 4.200000e-125 459.0
19 TraesCS7D01G517700 chr7A 77.257 875 101 48 987 1806 709392811 709391980 1.530000e-114 424.0
20 TraesCS7D01G517700 chr7A 80.000 405 59 10 2205 2609 679946592 679946210 3.510000e-71 279.0
21 TraesCS7D01G517700 chr7A 78.571 252 50 3 3370 3619 709390095 709389846 3.690000e-36 163.0
22 TraesCS7D01G517700 chr7A 78.894 199 35 6 3714 3908 709728595 709728790 1.350000e-25 128.0
23 TraesCS7D01G517700 chr7A 78.235 170 33 4 3443 3610 709728593 709728760 6.310000e-19 106.0
24 TraesCS7D01G517700 chr3B 78.367 943 180 18 2205 3137 283126115 283127043 1.430000e-164 590.0
25 TraesCS7D01G517700 chr3B 93.013 229 16 0 4381 4609 705998825 705999053 7.390000e-88 335.0
26 TraesCS7D01G517700 chr3D 96.507 229 8 0 4381 4609 498891611 498891839 3.370000e-101 379.0
27 TraesCS7D01G517700 chr5D 96.070 229 9 0 4381 4609 534010175 534009947 1.570000e-99 374.0
28 TraesCS7D01G517700 chr5D 93.013 229 16 0 4381 4609 438386449 438386677 7.390000e-88 335.0
29 TraesCS7D01G517700 chr5D 88.789 223 24 1 4381 4602 412592980 412592758 5.880000e-69 272.0
30 TraesCS7D01G517700 chr2A 95.133 226 8 2 4382 4606 768650216 768650439 2.040000e-93 353.0
31 TraesCS7D01G517700 chr6B 89.565 230 23 1 4381 4609 41978709 41978938 1.620000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G517700 chr7D 616501120 616505728 4608 True 8512.000000 8512 100.00000 1 4609 1 chr7D.!!$R5 4608
1 TraesCS7D01G517700 chr7D 616411271 616412337 1066 True 1218.000000 1218 87.21300 1979 3063 1 chr7D.!!$R3 1084
2 TraesCS7D01G517700 chr7D 617028016 617028994 978 False 612.000000 612 78.24800 2205 3184 1 chr7D.!!$F2 979
3 TraesCS7D01G517700 chr7D 616275248 616276404 1156 True 359.500000 571 82.28800 1982 3184 2 chr7D.!!$R6 1202
4 TraesCS7D01G517700 chr7B 709602154 709608766 6612 True 1531.333333 3345 85.18400 1 3649 3 chr7B.!!$R4 3648
5 TraesCS7D01G517700 chr7B 709529480 709530403 923 True 520.000000 520 77.14300 2208 3142 1 chr7B.!!$R3 934
6 TraesCS7D01G517700 chr7A 709389282 709392811 3529 True 1046.000000 3138 84.57075 987 4354 4 chr7A.!!$R3 3367
7 TraesCS7D01G517700 chr7A 709404676 709405197 521 True 789.000000 789 93.91600 1 524 1 chr7A.!!$R2 523
8 TraesCS7D01G517700 chr7A 709755487 709756876 1389 False 610.000000 610 75.14000 2205 3610 1 chr7A.!!$F1 1405
9 TraesCS7D01G517700 chr3B 283126115 283127043 928 False 590.000000 590 78.36700 2205 3137 1 chr3B.!!$F1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 598 0.029834 CGTGGTTAGCCGCTACGTAT 59.970 55.0 7.62 0.0 42.91 3.06 F
825 897 0.103937 TGGCACCAAAAAGGAAAGCG 59.896 50.0 0.00 0.0 41.22 4.68 F
1222 1333 0.183492 TTGCTGTCCACCTCAAGCTT 59.817 50.0 0.00 0.0 0.00 3.74 F
1224 1335 0.595095 GCTGTCCACCTCAAGCTTTG 59.405 55.0 0.00 0.0 0.00 2.77 F
3158 3428 0.250124 CACCCCAACTGCAGACGTTA 60.250 55.0 23.35 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2212 0.034896 ACAAGGGCGTGGACTGTTAG 59.965 55.0 0.00 0.00 0.00 2.34 R
2690 2941 0.109689 GACTCAACCGTCTCGACAGG 60.110 60.0 0.00 2.75 0.00 4.00 R
3158 3428 0.473755 TGGCACTCACATCCAAGTGT 59.526 50.0 4.62 0.00 43.82 3.55 R
3214 3488 3.251571 GTCCGAGTACACATGTCTTTCC 58.748 50.0 0.00 0.00 0.00 3.13 R
4548 7226 0.108138 AAGGCGCTATCTTGTTCGCT 60.108 50.0 7.64 0.00 45.97 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.659610 GGTCGGTGCAGAAGAGCT 59.340 61.111 7.64 0.00 34.99 4.09
120 124 4.779733 GGAGGAGCCCGAGGTGGA 62.780 72.222 0.00 0.00 42.00 4.02
121 125 2.683933 GAGGAGCCCGAGGTGGAA 60.684 66.667 0.00 0.00 42.00 3.53
122 126 2.685380 AGGAGCCCGAGGTGGAAG 60.685 66.667 0.00 0.00 42.00 3.46
133 137 2.530701 GAGGTGGAAGAGAAGGAGTCA 58.469 52.381 0.00 0.00 0.00 3.41
135 139 1.066502 GGTGGAAGAGAAGGAGTCAGC 60.067 57.143 0.00 0.00 0.00 4.26
136 140 1.620819 GTGGAAGAGAAGGAGTCAGCA 59.379 52.381 0.00 0.00 0.00 4.41
192 196 1.355066 GACGAGCTGTAGTTGCTGCC 61.355 60.000 0.00 0.00 41.30 4.85
267 276 1.609841 GGTTTCGAGGGACGTCCATTT 60.610 52.381 34.40 19.87 43.13 2.32
392 407 4.088634 TCAAATTAGCATGCCTGGTTTCT 58.911 39.130 15.66 0.00 34.31 2.52
401 416 0.250338 GCCTGGTTTCTGTCCGAAGT 60.250 55.000 0.00 0.00 32.21 3.01
413 436 1.534163 GTCCGAAGTGCCCTTTTGTAC 59.466 52.381 0.00 0.00 0.00 2.90
434 457 3.119137 ACACTTGCTGTTTTGGTTTCCTC 60.119 43.478 0.00 0.00 0.00 3.71
435 458 3.096092 ACTTGCTGTTTTGGTTTCCTCA 58.904 40.909 0.00 0.00 0.00 3.86
489 512 1.134877 GGGTTACGAAGGTAGTCTGGC 60.135 57.143 0.00 0.00 0.00 4.85
490 513 1.823610 GGTTACGAAGGTAGTCTGGCT 59.176 52.381 0.00 0.00 0.00 4.75
495 518 2.093106 CGAAGGTAGTCTGGCTGTACT 58.907 52.381 0.00 0.00 0.00 2.73
504 527 5.746990 AGTCTGGCTGTACTGAGTTTTAT 57.253 39.130 3.61 0.00 0.00 1.40
506 529 4.870991 GTCTGGCTGTACTGAGTTTTATCC 59.129 45.833 3.61 0.00 0.00 2.59
519 542 5.593909 TGAGTTTTATCCATGCAGGGTTATG 59.406 40.000 18.43 0.00 38.24 1.90
524 547 0.552848 CCATGCAGGGTTATGAGGGT 59.447 55.000 9.85 0.00 0.00 4.34
525 548 1.774254 CCATGCAGGGTTATGAGGGTA 59.226 52.381 9.85 0.00 0.00 3.69
526 549 2.224621 CCATGCAGGGTTATGAGGGTAG 60.225 54.545 9.85 0.00 0.00 3.18
527 550 2.263895 TGCAGGGTTATGAGGGTAGT 57.736 50.000 0.00 0.00 0.00 2.73
528 551 2.557869 TGCAGGGTTATGAGGGTAGTT 58.442 47.619 0.00 0.00 0.00 2.24
529 552 2.504175 TGCAGGGTTATGAGGGTAGTTC 59.496 50.000 0.00 0.00 0.00 3.01
530 553 2.158798 GCAGGGTTATGAGGGTAGTTCC 60.159 54.545 0.00 0.00 0.00 3.62
543 566 4.628963 GGTAGTTCCCAAGGTTGAGTTA 57.371 45.455 0.00 0.00 0.00 2.24
549 572 0.872388 CCAAGGTTGAGTTACCACGC 59.128 55.000 0.00 0.00 40.82 5.34
552 575 2.674084 GGTTGAGTTACCACGCGGC 61.674 63.158 12.47 0.00 38.12 6.53
553 576 1.957186 GTTGAGTTACCACGCGGCA 60.957 57.895 12.47 0.00 34.57 5.69
566 589 3.799755 CGGCAAGCGTGGTTAGCC 61.800 66.667 0.79 12.27 41.86 3.93
572 595 3.252484 GCGTGGTTAGCCGCTACG 61.252 66.667 7.62 8.71 46.08 3.51
573 596 2.180017 CGTGGTTAGCCGCTACGT 59.820 61.111 7.62 0.00 42.91 3.57
574 597 1.429021 CGTGGTTAGCCGCTACGTA 59.571 57.895 7.62 0.00 42.91 3.57
575 598 0.029834 CGTGGTTAGCCGCTACGTAT 59.970 55.000 7.62 0.00 42.91 3.06
576 599 1.264020 CGTGGTTAGCCGCTACGTATA 59.736 52.381 7.62 0.00 42.91 1.47
577 600 2.095567 CGTGGTTAGCCGCTACGTATAT 60.096 50.000 7.62 0.00 42.91 0.86
578 601 3.610114 CGTGGTTAGCCGCTACGTATATT 60.610 47.826 7.62 0.00 42.91 1.28
579 602 3.916776 GTGGTTAGCCGCTACGTATATTC 59.083 47.826 0.00 0.00 41.88 1.75
580 603 3.822735 TGGTTAGCCGCTACGTATATTCT 59.177 43.478 0.00 0.00 37.67 2.40
581 604 4.083110 TGGTTAGCCGCTACGTATATTCTC 60.083 45.833 0.00 0.00 37.67 2.87
584 607 4.579454 AGCCGCTACGTATATTCTCAAA 57.421 40.909 0.00 0.00 0.00 2.69
585 608 4.547532 AGCCGCTACGTATATTCTCAAAG 58.452 43.478 0.00 0.00 0.00 2.77
586 609 3.121445 GCCGCTACGTATATTCTCAAAGC 59.879 47.826 0.00 0.00 0.00 3.51
588 611 4.383052 CCGCTACGTATATTCTCAAAGCAG 59.617 45.833 0.00 0.00 0.00 4.24
589 612 4.383052 CGCTACGTATATTCTCAAAGCAGG 59.617 45.833 0.00 0.00 0.00 4.85
590 613 5.529791 GCTACGTATATTCTCAAAGCAGGA 58.470 41.667 0.00 0.00 0.00 3.86
592 615 4.372656 ACGTATATTCTCAAAGCAGGAGC 58.627 43.478 0.00 0.00 42.56 4.70
602 625 2.659610 GCAGGAGCGAGTTCCACT 59.340 61.111 8.64 0.00 39.84 4.00
603 626 1.004440 GCAGGAGCGAGTTCCACTT 60.004 57.895 8.64 0.00 39.84 3.16
605 628 0.671781 CAGGAGCGAGTTCCACTTGG 60.672 60.000 8.64 0.00 39.84 3.61
619 676 0.106519 ACTTGGGAGTTTGTGCTGCT 60.107 50.000 0.00 0.00 29.87 4.24
623 680 0.595095 GGGAGTTTGTGCTGCTGAAG 59.405 55.000 0.00 0.00 0.00 3.02
640 697 4.253685 CTGAAGCCGATTTTAGACTGGAA 58.746 43.478 0.00 0.00 0.00 3.53
642 699 3.695830 AGCCGATTTTAGACTGGAACA 57.304 42.857 0.00 0.00 0.00 3.18
662 719 7.765360 TGGAACAGAAATGGATTGATTATTTGC 59.235 33.333 0.00 0.00 0.00 3.68
663 720 7.983484 GGAACAGAAATGGATTGATTATTTGCT 59.017 33.333 0.00 0.00 0.00 3.91
664 721 8.712285 AACAGAAATGGATTGATTATTTGCTG 57.288 30.769 0.00 0.00 32.11 4.41
665 722 7.270047 ACAGAAATGGATTGATTATTTGCTGG 58.730 34.615 0.00 0.00 31.22 4.85
666 723 7.124599 ACAGAAATGGATTGATTATTTGCTGGA 59.875 33.333 0.00 0.00 31.22 3.86
667 724 7.652105 CAGAAATGGATTGATTATTTGCTGGAG 59.348 37.037 0.00 0.00 0.00 3.86
668 725 7.343833 AGAAATGGATTGATTATTTGCTGGAGT 59.656 33.333 0.00 0.00 0.00 3.85
669 726 7.427989 AATGGATTGATTATTTGCTGGAGTT 57.572 32.000 0.00 0.00 0.00 3.01
670 727 6.211587 TGGATTGATTATTTGCTGGAGTTG 57.788 37.500 0.00 0.00 0.00 3.16
671 728 5.127519 TGGATTGATTATTTGCTGGAGTTGG 59.872 40.000 0.00 0.00 0.00 3.77
672 729 5.127682 GGATTGATTATTTGCTGGAGTTGGT 59.872 40.000 0.00 0.00 0.00 3.67
673 730 5.643379 TTGATTATTTGCTGGAGTTGGTC 57.357 39.130 0.00 0.00 0.00 4.02
675 732 2.507407 TATTTGCTGGAGTTGGTCCC 57.493 50.000 0.00 0.00 46.31 4.46
676 733 0.482446 ATTTGCTGGAGTTGGTCCCA 59.518 50.000 0.00 0.00 46.31 4.37
677 734 0.482446 TTTGCTGGAGTTGGTCCCAT 59.518 50.000 0.00 0.00 46.31 4.00
678 735 0.482446 TTGCTGGAGTTGGTCCCATT 59.518 50.000 0.00 0.00 46.31 3.16
679 736 0.482446 TGCTGGAGTTGGTCCCATTT 59.518 50.000 0.00 0.00 46.31 2.32
680 737 1.133199 TGCTGGAGTTGGTCCCATTTT 60.133 47.619 0.00 0.00 46.31 1.82
681 738 2.109128 TGCTGGAGTTGGTCCCATTTTA 59.891 45.455 0.00 0.00 46.31 1.52
682 739 2.755103 GCTGGAGTTGGTCCCATTTTAG 59.245 50.000 0.00 0.00 46.31 1.85
683 740 3.561313 GCTGGAGTTGGTCCCATTTTAGA 60.561 47.826 0.00 0.00 46.31 2.10
684 741 4.860022 CTGGAGTTGGTCCCATTTTAGAT 58.140 43.478 0.00 0.00 46.31 1.98
685 742 4.855340 TGGAGTTGGTCCCATTTTAGATC 58.145 43.478 0.00 0.00 46.31 2.75
686 743 4.290985 TGGAGTTGGTCCCATTTTAGATCA 59.709 41.667 0.00 0.00 46.31 2.92
687 744 4.884164 GGAGTTGGTCCCATTTTAGATCAG 59.116 45.833 0.00 0.00 39.88 2.90
688 745 5.339200 GGAGTTGGTCCCATTTTAGATCAGA 60.339 44.000 0.00 0.00 39.88 3.27
689 746 6.139679 AGTTGGTCCCATTTTAGATCAGAA 57.860 37.500 0.00 0.00 0.00 3.02
690 747 5.946377 AGTTGGTCCCATTTTAGATCAGAAC 59.054 40.000 0.00 0.00 0.00 3.01
691 748 5.779241 TGGTCCCATTTTAGATCAGAACT 57.221 39.130 0.00 0.00 0.00 3.01
692 749 5.500234 TGGTCCCATTTTAGATCAGAACTG 58.500 41.667 0.00 0.00 0.00 3.16
693 750 5.014123 TGGTCCCATTTTAGATCAGAACTGT 59.986 40.000 0.00 0.00 0.00 3.55
694 751 5.586643 GGTCCCATTTTAGATCAGAACTGTC 59.413 44.000 0.00 0.24 0.00 3.51
695 752 6.410540 GTCCCATTTTAGATCAGAACTGTCT 58.589 40.000 0.00 6.86 32.85 3.41
696 753 7.364762 GGTCCCATTTTAGATCAGAACTGTCTA 60.365 40.741 0.00 6.05 30.85 2.59
697 754 8.207545 GTCCCATTTTAGATCAGAACTGTCTAT 58.792 37.037 0.00 0.00 30.85 1.98
698 755 8.206867 TCCCATTTTAGATCAGAACTGTCTATG 58.793 37.037 0.00 9.50 30.85 2.23
699 756 7.989741 CCCATTTTAGATCAGAACTGTCTATGT 59.010 37.037 0.00 0.00 30.85 2.29
700 757 8.824781 CCATTTTAGATCAGAACTGTCTATGTG 58.175 37.037 0.00 10.71 30.85 3.21
701 758 9.591792 CATTTTAGATCAGAACTGTCTATGTGA 57.408 33.333 0.00 0.00 30.85 3.58
704 761 9.591792 TTTAGATCAGAACTGTCTATGTGATTG 57.408 33.333 0.00 0.00 30.85 2.67
705 762 7.415592 AGATCAGAACTGTCTATGTGATTGA 57.584 36.000 0.00 0.00 30.85 2.57
706 763 8.020777 AGATCAGAACTGTCTATGTGATTGAT 57.979 34.615 0.00 0.00 30.85 2.57
707 764 7.927092 AGATCAGAACTGTCTATGTGATTGATG 59.073 37.037 0.00 0.00 30.85 3.07
708 765 6.939622 TCAGAACTGTCTATGTGATTGATGT 58.060 36.000 1.73 0.00 30.85 3.06
709 766 6.815142 TCAGAACTGTCTATGTGATTGATGTG 59.185 38.462 1.73 0.00 30.85 3.21
710 767 6.592994 CAGAACTGTCTATGTGATTGATGTGT 59.407 38.462 0.00 0.00 30.85 3.72
711 768 6.592994 AGAACTGTCTATGTGATTGATGTGTG 59.407 38.462 0.00 0.00 29.93 3.82
712 769 5.798132 ACTGTCTATGTGATTGATGTGTGT 58.202 37.500 0.00 0.00 0.00 3.72
713 770 5.871524 ACTGTCTATGTGATTGATGTGTGTC 59.128 40.000 0.00 0.00 0.00 3.67
717 774 6.591448 GTCTATGTGATTGATGTGTGTCTGAA 59.409 38.462 0.00 0.00 0.00 3.02
726 783 1.048601 GTGTGTCTGAAGAGGTGGGA 58.951 55.000 0.00 0.00 0.00 4.37
727 784 1.416401 GTGTGTCTGAAGAGGTGGGAA 59.584 52.381 0.00 0.00 0.00 3.97
733 790 2.108250 TCTGAAGAGGTGGGAAAAAGGG 59.892 50.000 0.00 0.00 0.00 3.95
739 796 0.485543 GGTGGGAAAAAGGGGGAAGA 59.514 55.000 0.00 0.00 0.00 2.87
740 797 1.132977 GGTGGGAAAAAGGGGGAAGAA 60.133 52.381 0.00 0.00 0.00 2.52
742 799 2.632996 GTGGGAAAAAGGGGGAAGAAAG 59.367 50.000 0.00 0.00 0.00 2.62
751 817 3.687125 AGGGGGAAGAAAGAAAATCGTC 58.313 45.455 0.00 0.00 0.00 4.20
776 842 2.438434 CCGTGGGATTGCTGGGAC 60.438 66.667 0.00 0.00 0.00 4.46
777 843 2.671070 CGTGGGATTGCTGGGACT 59.329 61.111 0.00 0.00 0.00 3.85
778 844 1.002134 CGTGGGATTGCTGGGACTT 60.002 57.895 0.00 0.00 0.00 3.01
779 845 1.308069 CGTGGGATTGCTGGGACTTG 61.308 60.000 0.00 0.00 0.00 3.16
780 846 1.304381 TGGGATTGCTGGGACTTGC 60.304 57.895 0.00 0.00 0.00 4.01
781 847 2.054453 GGGATTGCTGGGACTTGCC 61.054 63.158 0.00 0.00 0.00 4.52
782 848 1.304381 GGATTGCTGGGACTTGCCA 60.304 57.895 0.00 0.00 38.95 4.92
783 849 1.598701 GGATTGCTGGGACTTGCCAC 61.599 60.000 0.00 0.00 38.95 5.01
784 850 0.610232 GATTGCTGGGACTTGCCACT 60.610 55.000 0.00 0.00 38.95 4.00
786 852 0.823356 TTGCTGGGACTTGCCACTTC 60.823 55.000 0.00 0.00 38.95 3.01
788 854 2.281484 TGGGACTTGCCACTTCGC 60.281 61.111 0.00 0.00 38.95 4.70
789 855 2.281484 GGGACTTGCCACTTCGCA 60.281 61.111 0.00 0.00 38.95 5.10
790 856 2.617274 GGGACTTGCCACTTCGCAC 61.617 63.158 0.00 0.00 38.83 5.34
791 857 1.598130 GGACTTGCCACTTCGCACT 60.598 57.895 0.00 0.00 38.83 4.40
793 859 0.235926 GACTTGCCACTTCGCACTTC 59.764 55.000 0.00 0.00 38.83 3.01
794 860 0.463654 ACTTGCCACTTCGCACTTCA 60.464 50.000 0.00 0.00 38.83 3.02
825 897 0.103937 TGGCACCAAAAAGGAAAGCG 59.896 50.000 0.00 0.00 41.22 4.68
850 922 2.185350 CTCCGCCGATCTTGCAGT 59.815 61.111 5.15 0.00 0.00 4.40
851 923 2.125552 TCCGCCGATCTTGCAGTG 60.126 61.111 5.15 0.00 0.00 3.66
870 942 2.753043 CAGCAATGGCCGCTCCTT 60.753 61.111 0.00 0.00 42.56 3.36
871 943 2.439156 AGCAATGGCCGCTCCTTC 60.439 61.111 0.00 0.00 42.56 3.46
872 944 3.521796 GCAATGGCCGCTCCTTCC 61.522 66.667 0.00 0.00 35.26 3.46
873 945 2.830370 CAATGGCCGCTCCTTCCC 60.830 66.667 0.00 0.00 35.26 3.97
874 946 4.129148 AATGGCCGCTCCTTCCCC 62.129 66.667 0.00 0.00 35.26 4.81
889 961 3.039526 CCCTCCCCCTCCTCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
890 962 1.705450 CCCTCCCCCTCCTCCTCTA 60.705 68.421 0.00 0.00 0.00 2.43
891 963 1.735455 CCCTCCCCCTCCTCCTCTAG 61.735 70.000 0.00 0.00 0.00 2.43
892 964 0.703056 CCTCCCCCTCCTCCTCTAGA 60.703 65.000 0.00 0.00 0.00 2.43
895 967 0.411848 CCCCCTCCTCCTCTAGATCC 59.588 65.000 0.00 0.00 0.00 3.36
912 984 3.171987 CGCAGGTAAGCAGCACTG 58.828 61.111 0.00 0.00 0.00 3.66
913 985 1.669115 CGCAGGTAAGCAGCACTGT 60.669 57.895 0.00 0.00 33.62 3.55
917 989 2.005451 CAGGTAAGCAGCACTGTCATC 58.995 52.381 0.00 0.00 0.00 2.92
918 990 1.625315 AGGTAAGCAGCACTGTCATCA 59.375 47.619 0.00 0.00 0.00 3.07
927 1010 1.202627 GCACTGTCATCATCCTCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
932 1015 1.132881 GTCATCATCCTCTCCCCTCCT 60.133 57.143 0.00 0.00 0.00 3.69
935 1018 1.324014 TCATCCTCTCCCCTCCTCTT 58.676 55.000 0.00 0.00 0.00 2.85
940 1023 0.252467 CTCTCCCCTCCTCTTGGTGT 60.252 60.000 0.00 0.00 34.23 4.16
947 1030 1.912043 CCTCCTCTTGGTGTTCCTGAT 59.088 52.381 0.00 0.00 34.23 2.90
948 1031 2.307098 CCTCCTCTTGGTGTTCCTGATT 59.693 50.000 0.00 0.00 34.23 2.57
949 1032 3.519510 CCTCCTCTTGGTGTTCCTGATTA 59.480 47.826 0.00 0.00 34.23 1.75
950 1033 4.383552 CCTCCTCTTGGTGTTCCTGATTAG 60.384 50.000 0.00 0.00 34.23 1.73
952 1035 4.223032 TCCTCTTGGTGTTCCTGATTAGTC 59.777 45.833 0.00 0.00 34.23 2.59
959 1042 4.562963 GGTGTTCCTGATTAGTCGGTTTCT 60.563 45.833 0.00 0.00 0.00 2.52
962 1045 3.437213 TCCTGATTAGTCGGTTTCTCCA 58.563 45.455 0.00 0.00 35.57 3.86
963 1046 4.030913 TCCTGATTAGTCGGTTTCTCCAT 58.969 43.478 0.00 0.00 35.57 3.41
965 1048 5.659525 TCCTGATTAGTCGGTTTCTCCATTA 59.340 40.000 0.00 0.00 35.57 1.90
966 1049 6.155565 TCCTGATTAGTCGGTTTCTCCATTAA 59.844 38.462 0.00 0.00 35.57 1.40
968 1051 6.703319 TGATTAGTCGGTTTCTCCATTAACA 58.297 36.000 0.00 0.00 35.57 2.41
969 1052 6.592607 TGATTAGTCGGTTTCTCCATTAACAC 59.407 38.462 0.00 0.00 35.57 3.32
972 1055 2.372504 TCGGTTTCTCCATTAACACCCA 59.627 45.455 0.00 0.00 35.57 4.51
973 1056 2.486592 CGGTTTCTCCATTAACACCCAC 59.513 50.000 0.00 0.00 35.57 4.61
977 1060 0.701731 CTCCATTAACACCCACCCCA 59.298 55.000 0.00 0.00 0.00 4.96
978 1061 0.406361 TCCATTAACACCCACCCCAC 59.594 55.000 0.00 0.00 0.00 4.61
979 1062 0.613572 CCATTAACACCCACCCCACC 60.614 60.000 0.00 0.00 0.00 4.61
980 1063 0.407918 CATTAACACCCACCCCACCT 59.592 55.000 0.00 0.00 0.00 4.00
981 1064 0.702316 ATTAACACCCACCCCACCTC 59.298 55.000 0.00 0.00 0.00 3.85
982 1065 1.428718 TTAACACCCACCCCACCTCC 61.429 60.000 0.00 0.00 0.00 4.30
1017 1100 3.728373 ATGGTGGAAGGGTCGGCC 61.728 66.667 0.00 0.00 0.00 6.13
1049 1135 3.958860 GCAGGAGCACCACCACCT 61.959 66.667 2.07 0.00 41.58 4.00
1106 1192 2.864378 CTTCCCGCGGTAACTTCCCC 62.864 65.000 26.12 0.00 0.00 4.81
1107 1193 3.708544 CCCGCGGTAACTTCCCCA 61.709 66.667 26.12 0.00 0.00 4.96
1110 1196 2.751688 GCGGTAACTTCCCCACCA 59.248 61.111 0.00 0.00 32.32 4.17
1121 1207 2.529136 CCCACCACCACCTCCTCA 60.529 66.667 0.00 0.00 0.00 3.86
1122 1208 2.596851 CCCACCACCACCTCCTCAG 61.597 68.421 0.00 0.00 0.00 3.35
1123 1209 2.596851 CCACCACCACCTCCTCAGG 61.597 68.421 0.00 0.00 46.87 3.86
1143 1254 2.552155 GGCTTGTGTGGTGTTCTCCATA 60.552 50.000 0.00 0.00 39.81 2.74
1153 1264 3.133721 GGTGTTCTCCATAGATCTGCACT 59.866 47.826 5.18 0.00 0.00 4.40
1156 1267 4.713814 TGTTCTCCATAGATCTGCACTTCT 59.286 41.667 5.18 0.00 0.00 2.85
1168 1279 0.318699 GCACTTCTGGGGCGAAAAAC 60.319 55.000 0.00 0.00 0.00 2.43
1170 1281 2.500229 CACTTCTGGGGCGAAAAACTA 58.500 47.619 0.00 0.00 0.00 2.24
1187 1298 2.374184 ACTAGTGTTTTGTTGCCTGCA 58.626 42.857 0.00 0.00 0.00 4.41
1188 1299 2.358898 ACTAGTGTTTTGTTGCCTGCAG 59.641 45.455 6.78 6.78 0.00 4.41
1214 1325 2.617274 GCTTCGGTTGCTGTCCACC 61.617 63.158 0.00 0.00 0.00 4.61
1220 1331 1.518903 GGTTGCTGTCCACCTCAAGC 61.519 60.000 0.00 0.00 0.00 4.01
1221 1332 0.536006 GTTGCTGTCCACCTCAAGCT 60.536 55.000 0.00 0.00 0.00 3.74
1222 1333 0.183492 TTGCTGTCCACCTCAAGCTT 59.817 50.000 0.00 0.00 0.00 3.74
1223 1334 0.183492 TGCTGTCCACCTCAAGCTTT 59.817 50.000 0.00 0.00 0.00 3.51
1224 1335 0.595095 GCTGTCCACCTCAAGCTTTG 59.405 55.000 0.00 0.00 0.00 2.77
1225 1336 1.972872 CTGTCCACCTCAAGCTTTGT 58.027 50.000 0.00 0.00 0.00 2.83
1226 1337 2.301346 CTGTCCACCTCAAGCTTTGTT 58.699 47.619 0.00 0.00 0.00 2.83
1227 1338 2.291741 CTGTCCACCTCAAGCTTTGTTC 59.708 50.000 0.00 0.00 0.00 3.18
1232 1343 4.097892 TCCACCTCAAGCTTTGTTCTTTTC 59.902 41.667 0.00 0.00 0.00 2.29
1236 1347 5.418840 ACCTCAAGCTTTGTTCTTTTCTTGA 59.581 36.000 0.00 0.00 37.97 3.02
1245 1356 7.524294 TTTGTTCTTTTCTTGATTGAAGTGC 57.476 32.000 0.00 0.00 32.90 4.40
1247 1358 3.888934 TCTTTTCTTGATTGAAGTGCGC 58.111 40.909 0.00 0.00 32.90 6.09
1274 1386 3.498777 GTGTCTAGGGTTTCTTGCTCAAC 59.501 47.826 0.00 0.00 0.00 3.18
1275 1387 3.391296 TGTCTAGGGTTTCTTGCTCAACT 59.609 43.478 0.00 0.00 0.00 3.16
1278 1390 3.018423 AGGGTTTCTTGCTCAACTTGT 57.982 42.857 0.00 0.00 0.00 3.16
1279 1391 2.689983 AGGGTTTCTTGCTCAACTTGTG 59.310 45.455 0.00 0.00 0.00 3.33
1282 1394 2.849880 TTCTTGCTCAACTTGTGTGC 57.150 45.000 0.00 0.00 45.17 4.57
1286 1398 2.620251 TGCTCAACTTGTGTGCTAGT 57.380 45.000 0.00 0.00 45.18 2.57
1287 1399 3.744238 TGCTCAACTTGTGTGCTAGTA 57.256 42.857 0.00 0.00 45.18 1.82
1290 1402 3.923461 GCTCAACTTGTGTGCTAGTAGAG 59.077 47.826 0.00 0.00 42.32 2.43
1291 1403 4.559704 GCTCAACTTGTGTGCTAGTAGAGT 60.560 45.833 0.00 0.00 42.32 3.24
1292 1404 5.335740 GCTCAACTTGTGTGCTAGTAGAGTA 60.336 44.000 0.00 0.00 42.32 2.59
1293 1405 6.255596 TCAACTTGTGTGCTAGTAGAGTAG 57.744 41.667 0.00 0.00 30.84 2.57
1296 1408 7.176865 TCAACTTGTGTGCTAGTAGAGTAGAAT 59.823 37.037 0.00 0.00 30.84 2.40
1301 1413 6.993308 TGTGTGCTAGTAGAGTAGAATAGAGG 59.007 42.308 0.00 0.00 0.00 3.69
1302 1414 6.428771 GTGTGCTAGTAGAGTAGAATAGAGGG 59.571 46.154 0.00 0.00 0.00 4.30
1304 1416 5.073280 TGCTAGTAGAGTAGAATAGAGGGCA 59.927 44.000 0.00 0.00 0.00 5.36
1318 1430 2.747855 GGCACCGGCTTCCTTCAG 60.748 66.667 0.00 0.00 40.87 3.02
1329 1441 4.274950 CGGCTTCCTTCAGTTGTTAGAAAA 59.725 41.667 0.00 0.00 0.00 2.29
1330 1442 5.220970 CGGCTTCCTTCAGTTGTTAGAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
1348 1460 2.907458 AAAGGAAGGGAGATTGGTGG 57.093 50.000 0.00 0.00 0.00 4.61
1352 1472 1.143889 GGAAGGGAGATTGGTGGATCC 59.856 57.143 4.20 4.20 0.00 3.36
1359 1479 2.774234 GAGATTGGTGGATCCCTTCTGA 59.226 50.000 9.90 0.00 34.77 3.27
1373 1493 5.032846 TCCCTTCTGATGAATGTAGTCCTT 58.967 41.667 0.00 0.00 0.00 3.36
1378 1498 7.609532 CCTTCTGATGAATGTAGTCCTTTTTCT 59.390 37.037 0.00 0.00 0.00 2.52
1379 1499 7.912056 TCTGATGAATGTAGTCCTTTTTCTG 57.088 36.000 0.00 0.00 0.00 3.02
1380 1500 7.453393 TCTGATGAATGTAGTCCTTTTTCTGT 58.547 34.615 0.00 0.00 0.00 3.41
1382 1502 8.099364 TGATGAATGTAGTCCTTTTTCTGTTC 57.901 34.615 0.00 0.00 0.00 3.18
1383 1503 6.877611 TGAATGTAGTCCTTTTTCTGTTCC 57.122 37.500 0.00 0.00 0.00 3.62
1384 1504 6.361433 TGAATGTAGTCCTTTTTCTGTTCCA 58.639 36.000 0.00 0.00 0.00 3.53
1385 1505 6.262273 TGAATGTAGTCCTTTTTCTGTTCCAC 59.738 38.462 0.00 0.00 0.00 4.02
1386 1506 5.105567 TGTAGTCCTTTTTCTGTTCCACA 57.894 39.130 0.00 0.00 0.00 4.17
1391 1511 3.568007 TCCTTTTTCTGTTCCACATTCCG 59.432 43.478 0.00 0.00 0.00 4.30
1399 1519 5.175859 TCTGTTCCACATTCCGACTAAATC 58.824 41.667 0.00 0.00 0.00 2.17
1400 1520 5.046591 TCTGTTCCACATTCCGACTAAATCT 60.047 40.000 0.00 0.00 0.00 2.40
1405 1525 5.817296 TCCACATTCCGACTAAATCTCATTG 59.183 40.000 0.00 0.00 0.00 2.82
1409 1529 3.706698 TCCGACTAAATCTCATTGCGAG 58.293 45.455 0.00 0.00 43.80 5.03
1421 1553 4.701651 TCTCATTGCGAGACAAAATCCAAT 59.298 37.500 0.00 0.00 46.18 3.16
1422 1554 4.735985 TCATTGCGAGACAAAATCCAATG 58.264 39.130 0.00 0.00 42.86 2.82
1438 1570 8.442632 AAATCCAATGTGTACATGACTGATAG 57.557 34.615 0.00 0.00 36.56 2.08
1443 1575 7.439356 CCAATGTGTACATGACTGATAGGTAAG 59.561 40.741 0.00 0.00 36.56 2.34
1448 1580 7.220300 GTGTACATGACTGATAGGTAAGAAACG 59.780 40.741 0.00 0.00 0.00 3.60
1453 1585 5.359009 TGACTGATAGGTAAGAAACGGTAGG 59.641 44.000 0.00 0.00 0.00 3.18
1491 1624 5.163953 CGCCAAACTGAACACTAGATTACAG 60.164 44.000 0.00 3.67 0.00 2.74
1492 1625 5.390991 GCCAAACTGAACACTAGATTACAGC 60.391 44.000 0.00 0.00 0.00 4.40
1493 1626 5.700832 CCAAACTGAACACTAGATTACAGCA 59.299 40.000 0.00 0.00 0.00 4.41
1508 1641 1.148310 CAGCACGACAGTTACTTGGG 58.852 55.000 0.00 0.00 0.00 4.12
1509 1642 0.602905 AGCACGACAGTTACTTGGGC 60.603 55.000 0.00 0.00 0.00 5.36
1513 1646 1.134340 ACGACAGTTACTTGGGCACAA 60.134 47.619 0.00 0.00 34.87 3.33
1532 1669 3.194542 ACAAGACAGTGCATAGAGAGGAC 59.805 47.826 0.00 0.00 0.00 3.85
1545 1682 4.120946 AGAGAGGACCACTAGTTTCAGT 57.879 45.455 0.00 0.00 0.00 3.41
1546 1683 4.484912 AGAGAGGACCACTAGTTTCAGTT 58.515 43.478 0.00 0.00 0.00 3.16
1578 1719 1.117150 ATGGTTTCCATGCCATCAGC 58.883 50.000 0.11 0.00 43.39 4.26
1605 1747 9.410556 CAAAATTGTTTTCCTCATAACTACCAG 57.589 33.333 0.00 0.00 0.00 4.00
1621 1763 7.578310 AACTACCAGAAAGGAAAACCTTTAC 57.422 36.000 13.16 8.11 39.72 2.01
1640 1782 9.411189 ACCTTTACCTTATTTTGTAGTTTCACA 57.589 29.630 0.00 0.00 0.00 3.58
1660 1809 6.778821 TCACATTCCATCTAAGTTTGAAGGA 58.221 36.000 7.12 7.12 30.61 3.36
1666 1815 7.928307 TCCATCTAAGTTTGAAGGAGAAATG 57.072 36.000 7.12 0.00 29.39 2.32
1669 1818 7.826252 CCATCTAAGTTTGAAGGAGAAATGAGA 59.174 37.037 2.87 0.00 0.00 3.27
1695 1844 5.928976 TCTGTCTTCAGAGAAAAATGGACA 58.071 37.500 0.00 0.00 44.58 4.02
1721 1870 4.601406 ACTGTCCATTCTCTCTAGGAGT 57.399 45.455 7.76 0.00 42.40 3.85
1723 1872 3.546724 TGTCCATTCTCTCTAGGAGTCG 58.453 50.000 7.76 0.00 42.40 4.18
1725 1874 2.158593 TCCATTCTCTCTAGGAGTCGGG 60.159 54.545 7.76 7.71 42.40 5.14
1755 1904 8.289618 GCTGACACAACTATCTTTTAACATTCA 58.710 33.333 0.00 0.00 0.00 2.57
1774 1923 7.564793 ACATTCATTACTACAGACATTGCCTA 58.435 34.615 0.00 0.00 0.00 3.93
1775 1924 7.495934 ACATTCATTACTACAGACATTGCCTAC 59.504 37.037 0.00 0.00 0.00 3.18
1801 1950 0.824109 CTGTAACAGCATCCGGGAGA 59.176 55.000 0.00 0.00 0.00 3.71
1822 2066 6.363357 GGAGAACATGCAAGATTGTTACAAAC 59.637 38.462 0.66 0.00 36.25 2.93
1863 2107 7.177392 CCCAATAGAAACTCTCCAAAAAGATGT 59.823 37.037 0.00 0.00 0.00 3.06
1868 2112 7.880105 AGAAACTCTCCAAAAAGATGTGATTC 58.120 34.615 0.00 0.00 0.00 2.52
1871 2115 4.071423 TCTCCAAAAAGATGTGATTCGCA 58.929 39.130 1.78 1.78 0.00 5.10
1872 2116 4.701651 TCTCCAAAAAGATGTGATTCGCAT 59.298 37.500 12.38 12.38 37.29 4.73
1885 2129 3.624410 TGATTCGCATCTGGTCAGATTTG 59.376 43.478 10.47 6.76 45.31 2.32
1903 2147 9.685276 TCAGATTTGTCACTTTCCAATGTATAT 57.315 29.630 0.00 0.00 0.00 0.86
1934 2178 4.849383 GCATTGTGCAATTTGATTTTCAGC 59.151 37.500 0.00 0.00 44.26 4.26
1938 2182 6.621316 TGTGCAATTTGATTTTCAGCAAAT 57.379 29.167 0.00 0.00 44.17 2.32
1954 2198 2.287608 GCAAATTAGTGCCTATTCCGCC 60.288 50.000 0.00 0.00 38.66 6.13
1966 2212 1.673808 ATTCCGCCCGTCTACCAGTC 61.674 60.000 0.00 0.00 0.00 3.51
1977 2223 3.119919 CGTCTACCAGTCTAACAGTCCAC 60.120 52.174 0.00 0.00 0.00 4.02
2076 2322 6.707440 TTCAACAAGTTGGAAAATGCTCTA 57.293 33.333 12.54 0.00 40.78 2.43
2116 2362 5.476599 TCTGTGTTTTTATGGTCCCAATGAG 59.523 40.000 0.00 0.00 0.00 2.90
2194 2441 9.409312 GTTGATGAATATGTCAAAACATCACAA 57.591 29.630 0.00 0.00 42.59 3.33
2368 2616 4.554330 GCTTCATCAAAGGCGAAGATCATC 60.554 45.833 0.00 0.00 38.75 2.92
2369 2617 4.412796 TCATCAAAGGCGAAGATCATCT 57.587 40.909 0.00 0.00 0.00 2.90
2391 2639 7.645058 TCTCTTTTGACCTGAAGAAAATTGT 57.355 32.000 0.00 0.00 31.99 2.71
2410 2658 2.627699 TGTTTGCCCATCCAAAGAAGTC 59.372 45.455 0.00 0.00 35.55 3.01
2486 2734 3.361794 TGTATCTCGCTGATGCTTCTC 57.638 47.619 0.88 0.00 38.39 2.87
2581 2829 4.467735 GAGACTTTTCAGGCTTTTTAGCG 58.532 43.478 0.00 0.00 39.24 4.26
2690 2941 6.587226 TCAACATTTGCTAATTGACAGAATGC 59.413 34.615 0.00 0.00 42.53 3.56
3137 3407 2.037772 ACTGGTCCACTGTCTGAATGTC 59.962 50.000 0.00 0.00 0.00 3.06
3158 3428 0.250124 CACCCCAACTGCAGACGTTA 60.250 55.000 23.35 0.00 0.00 3.18
3184 3454 6.000219 ACTTGGATGTGAGTGCCATATTATC 59.000 40.000 0.00 0.00 0.00 1.75
3214 3488 6.414732 TGGTAGATAAACAGATGGTTTCCAG 58.585 40.000 0.00 0.00 46.61 3.86
3343 3617 4.511246 AGGCCCCCACATGCATCG 62.511 66.667 0.00 0.00 0.00 3.84
3400 3674 1.679898 GGTGCTACAAGGCTCAGGT 59.320 57.895 0.00 0.00 0.00 4.00
3472 3746 2.509651 TACAACCAAGGGTCGCGGT 61.510 57.895 6.13 0.00 33.12 5.68
3482 3756 1.881252 GGTCGCGGTCGCAATATGT 60.881 57.895 15.68 0.00 42.06 2.29
3610 3884 0.463474 GATGCCCCTTCAGAGTGAGC 60.463 60.000 0.00 0.00 0.00 4.26
3637 3911 4.390909 CCTATTTCTGTGTACCGTCAAACC 59.609 45.833 0.00 0.00 0.00 3.27
3662 3936 1.375523 GGGTTCTGGTGCTACACGG 60.376 63.158 0.00 0.00 34.83 4.94
3694 3968 1.227380 GGCGTGCTGTATCCTGGAG 60.227 63.158 1.52 0.00 0.00 3.86
3699 3973 2.216898 GTGCTGTATCCTGGAGAATGC 58.783 52.381 1.52 6.22 0.00 3.56
3710 3984 4.041567 TCCTGGAGAATGCTTGTGTTCTTA 59.958 41.667 0.00 0.00 34.97 2.10
3711 3985 4.761739 CCTGGAGAATGCTTGTGTTCTTAA 59.238 41.667 0.00 0.00 34.97 1.85
3749 4023 2.257676 GGATCGCGACCGGGATAC 59.742 66.667 12.93 16.88 45.73 2.24
3756 4030 2.584143 GACCGGGATACGCCGTTG 60.584 66.667 6.32 0.00 42.52 4.10
3794 4068 2.011947 TCGGCGTCGAGAGAAGATTTA 58.988 47.619 8.66 0.00 45.01 1.40
3807 4081 7.510675 AGAGAAGATTTATACCAAGGGTTCA 57.489 36.000 0.00 0.00 37.09 3.18
3810 4084 7.643123 AGAAGATTTATACCAAGGGTTCACAT 58.357 34.615 0.00 0.00 37.09 3.21
3838 4112 2.811317 CACACCTCGGAGCGCTTC 60.811 66.667 13.26 9.18 0.00 3.86
3851 4125 2.293627 CGCTTCGGTAAGGCGATCG 61.294 63.158 11.69 11.69 35.57 3.69
3879 4153 2.125350 CGGCCCTTCAGAGTGAGC 60.125 66.667 0.00 0.00 0.00 4.26
3899 4173 2.949963 GCAAGCCTATGTCATTTCCCCA 60.950 50.000 0.00 0.00 0.00 4.96
3920 4194 6.049149 CCCATCTGTGTACTATCAAACGATT 58.951 40.000 0.00 0.00 0.00 3.34
3942 4216 6.419980 TTTTGTCATGCCTTTTCAAAGTTG 57.580 33.333 0.00 0.00 34.20 3.16
3960 4234 3.332493 GATGTTGGCTGGTGCTGCG 62.332 63.158 0.00 0.00 39.59 5.18
4063 4438 6.690194 ATGTTGAACTGGCTAAATCATCTC 57.310 37.500 0.00 0.00 0.00 2.75
4086 4461 4.272018 CGAGCCATATGGTCTTTTCTCTTG 59.728 45.833 22.79 8.76 39.38 3.02
4124 4504 5.046910 ACAACTCTCATTTACATTTGCCG 57.953 39.130 0.00 0.00 0.00 5.69
4163 4543 9.857957 AGAAGTAAAACTAGATCCGAGTAAAAG 57.142 33.333 0.00 0.00 0.00 2.27
4196 4578 7.000575 TGTATCTTCAAAGTATGCGCTAAAC 57.999 36.000 9.73 3.91 0.00 2.01
4202 4584 4.570772 TCAAAGTATGCGCTAAACCATCTC 59.429 41.667 9.73 0.00 0.00 2.75
4210 4592 3.046390 CGCTAAACCATCTCGAGTCATC 58.954 50.000 13.13 0.00 0.00 2.92
4213 4595 3.533606 AAACCATCTCGAGTCATCCAG 57.466 47.619 13.13 0.00 0.00 3.86
4233 4637 6.295249 TCCAGAACATGTACACAGAATTTGA 58.705 36.000 0.00 0.00 0.00 2.69
4241 4645 7.121020 ACATGTACACAGAATTTGATGCATGTA 59.879 33.333 2.46 0.00 43.41 2.29
4281 4685 3.760537 TGAACACACACGCTTTAAAACC 58.239 40.909 0.00 0.00 0.00 3.27
4298 4702 4.361451 AAACCATGCTCATTTTCTAGCG 57.639 40.909 0.00 0.00 41.77 4.26
4328 4732 0.904394 ATGGCGCCCAACCTCAAATT 60.904 50.000 26.77 0.00 36.95 1.82
4335 4740 2.159057 GCCCAACCTCAAATTAGCATGG 60.159 50.000 0.00 0.00 0.00 3.66
4365 4770 2.627699 GCATGTTTCAGGGGTGAAGAAA 59.372 45.455 0.00 0.00 0.00 2.52
4375 4780 2.434336 GGGGTGAAGAAAGCCTGTTTTT 59.566 45.455 0.00 0.00 37.86 1.94
4395 4800 3.529634 TTTTTCACGAACGCATACAGG 57.470 42.857 0.00 0.00 0.00 4.00
4396 4801 0.793861 TTTCACGAACGCATACAGGC 59.206 50.000 0.00 0.00 0.00 4.85
4405 4810 3.903876 GCATACAGGCGTGAACATG 57.096 52.632 14.38 13.29 0.00 3.21
4407 4812 1.737838 CATACAGGCGTGAACATGGT 58.262 50.000 14.38 0.00 0.00 3.55
4410 4815 0.884704 ACAGGCGTGAACATGGTGTC 60.885 55.000 14.38 0.00 0.00 3.67
4411 4816 1.302511 AGGCGTGAACATGGTGTCC 60.303 57.895 0.00 0.00 0.00 4.02
4412 4817 2.677003 GGCGTGAACATGGTGTCCG 61.677 63.158 0.00 0.00 0.00 4.79
4413 4818 2.677003 GCGTGAACATGGTGTCCGG 61.677 63.158 0.00 0.00 0.00 5.14
4414 4819 1.005512 CGTGAACATGGTGTCCGGA 60.006 57.895 0.00 0.00 0.00 5.14
4415 4820 1.014044 CGTGAACATGGTGTCCGGAG 61.014 60.000 3.06 0.00 0.00 4.63
4416 4821 1.003839 TGAACATGGTGTCCGGAGC 60.004 57.895 3.06 0.00 0.00 4.70
4417 4822 1.003839 GAACATGGTGTCCGGAGCA 60.004 57.895 3.06 0.00 0.00 4.26
4419 4824 1.480212 AACATGGTGTCCGGAGCAGA 61.480 55.000 3.06 0.00 0.00 4.26
4421 4826 1.305297 ATGGTGTCCGGAGCAGAGA 60.305 57.895 3.06 0.00 0.00 3.10
4422 4827 1.326213 ATGGTGTCCGGAGCAGAGAG 61.326 60.000 3.06 0.00 0.00 3.20
4424 4829 1.509004 GTGTCCGGAGCAGAGAGAC 59.491 63.158 3.06 0.00 0.00 3.36
4425 4830 1.074951 TGTCCGGAGCAGAGAGACA 59.925 57.895 3.06 0.00 0.00 3.41
4426 4831 0.539669 TGTCCGGAGCAGAGAGACAA 60.540 55.000 3.06 0.00 0.00 3.18
4427 4832 0.172352 GTCCGGAGCAGAGAGACAAG 59.828 60.000 3.06 0.00 0.00 3.16
4434 4932 0.540923 GCAGAGAGACAAGGGATGCT 59.459 55.000 0.00 0.00 0.00 3.79
4437 4935 2.109774 AGAGAGACAAGGGATGCTCAG 58.890 52.381 0.00 0.00 35.76 3.35
4439 4937 0.463474 GAGACAAGGGATGCTCAGCC 60.463 60.000 0.00 0.00 34.39 4.85
4447 4945 1.817099 GATGCTCAGCCCGAACAGG 60.817 63.158 0.00 0.00 40.63 4.00
4458 4956 2.240493 CCGAACAGGGGATACATCAC 57.760 55.000 0.00 0.00 39.74 3.06
4475 7153 4.760204 ACATCACAGCTAAACCTACCAAAC 59.240 41.667 0.00 0.00 0.00 2.93
4476 7154 3.746940 TCACAGCTAAACCTACCAAACC 58.253 45.455 0.00 0.00 0.00 3.27
4478 7156 2.081462 CAGCTAAACCTACCAAACCCG 58.919 52.381 0.00 0.00 0.00 5.28
4479 7157 1.980036 AGCTAAACCTACCAAACCCGA 59.020 47.619 0.00 0.00 0.00 5.14
4482 7160 1.985473 AAACCTACCAAACCCGAACC 58.015 50.000 0.00 0.00 0.00 3.62
4484 7162 0.845337 ACCTACCAAACCCGAACCAA 59.155 50.000 0.00 0.00 0.00 3.67
4488 7166 2.375014 ACCAAACCCGAACCAAGAAT 57.625 45.000 0.00 0.00 0.00 2.40
4489 7167 1.960689 ACCAAACCCGAACCAAGAATG 59.039 47.619 0.00 0.00 0.00 2.67
4506 7184 3.372730 GGCAATGCCGAACCAGCA 61.373 61.111 9.14 0.00 45.94 4.41
4507 7185 2.650196 GCAATGCCGAACCAGCAA 59.350 55.556 0.00 0.00 44.83 3.91
4508 7186 1.444895 GCAATGCCGAACCAGCAAG 60.445 57.895 0.00 0.00 44.83 4.01
4509 7187 1.865788 GCAATGCCGAACCAGCAAGA 61.866 55.000 0.00 0.00 44.83 3.02
4510 7188 0.597568 CAATGCCGAACCAGCAAGAA 59.402 50.000 0.00 0.00 44.83 2.52
4511 7189 1.203052 CAATGCCGAACCAGCAAGAAT 59.797 47.619 0.00 0.00 44.83 2.40
4512 7190 1.549203 ATGCCGAACCAGCAAGAATT 58.451 45.000 0.00 0.00 44.83 2.17
4513 7191 0.881118 TGCCGAACCAGCAAGAATTC 59.119 50.000 0.00 0.00 37.28 2.17
4514 7192 0.171231 GCCGAACCAGCAAGAATTCC 59.829 55.000 0.65 0.00 0.00 3.01
4515 7193 1.533625 CCGAACCAGCAAGAATTCCA 58.466 50.000 0.65 0.00 0.00 3.53
4516 7194 1.885887 CCGAACCAGCAAGAATTCCAA 59.114 47.619 0.65 0.00 0.00 3.53
4517 7195 2.351738 CCGAACCAGCAAGAATTCCAAC 60.352 50.000 0.65 0.00 0.00 3.77
4518 7196 2.293122 CGAACCAGCAAGAATTCCAACA 59.707 45.455 0.65 0.00 0.00 3.33
4519 7197 3.057315 CGAACCAGCAAGAATTCCAACAT 60.057 43.478 0.65 0.00 0.00 2.71
4520 7198 4.488879 GAACCAGCAAGAATTCCAACATC 58.511 43.478 0.65 0.00 0.00 3.06
4521 7199 3.499338 ACCAGCAAGAATTCCAACATCA 58.501 40.909 0.65 0.00 0.00 3.07
4524 7202 3.508793 CAGCAAGAATTCCAACATCACCT 59.491 43.478 0.65 0.00 0.00 4.00
4527 7205 5.416952 AGCAAGAATTCCAACATCACCTAAG 59.583 40.000 0.65 0.00 0.00 2.18
4528 7206 5.644644 CAAGAATTCCAACATCACCTAAGC 58.355 41.667 0.65 0.00 0.00 3.09
4529 7207 4.273318 AGAATTCCAACATCACCTAAGCC 58.727 43.478 0.65 0.00 0.00 4.35
4530 7208 3.737559 ATTCCAACATCACCTAAGCCA 57.262 42.857 0.00 0.00 0.00 4.75
4532 7210 3.517296 TCCAACATCACCTAAGCCAAA 57.483 42.857 0.00 0.00 0.00 3.28
4535 7213 3.306019 CCAACATCACCTAAGCCAAAACC 60.306 47.826 0.00 0.00 0.00 3.27
4537 7215 1.472480 CATCACCTAAGCCAAAACCCG 59.528 52.381 0.00 0.00 0.00 5.28
4539 7217 1.076014 ACCTAAGCCAAAACCCGGG 59.924 57.895 22.25 22.25 0.00 5.73
4542 7220 0.250989 CTAAGCCAAAACCCGGGACA 60.251 55.000 32.02 0.00 0.00 4.02
4543 7221 0.537828 TAAGCCAAAACCCGGGACAC 60.538 55.000 32.02 10.10 0.00 3.67
4544 7222 3.299977 GCCAAAACCCGGGACACC 61.300 66.667 32.02 6.16 0.00 4.16
4557 7235 3.000080 GACACCGCGAGCGAACAAG 62.000 63.158 19.72 4.09 42.83 3.16
4558 7236 2.733218 CACCGCGAGCGAACAAGA 60.733 61.111 19.72 0.00 42.83 3.02
4560 7238 0.800683 CACCGCGAGCGAACAAGATA 60.801 55.000 19.72 0.00 42.83 1.98
4561 7239 0.525668 ACCGCGAGCGAACAAGATAG 60.526 55.000 19.72 1.10 42.83 2.08
4562 7240 1.555538 CGCGAGCGAACAAGATAGC 59.444 57.895 12.58 0.00 42.83 2.97
4563 7241 1.555538 GCGAGCGAACAAGATAGCG 59.444 57.895 0.00 0.00 34.34 4.26
4566 7244 4.110493 GCGAACAAGATAGCGCCT 57.890 55.556 2.29 0.00 43.33 5.52
4568 7246 0.301987 GCGAACAAGATAGCGCCTTC 59.698 55.000 2.29 0.34 43.33 3.46
4569 7247 1.640428 CGAACAAGATAGCGCCTTCA 58.360 50.000 2.29 0.00 0.00 3.02
4574 7252 3.265791 ACAAGATAGCGCCTTCAAGAAG 58.734 45.455 2.29 2.83 38.14 2.85
4585 7263 1.721926 CTTCAAGAAGGAAGTCGACGC 59.278 52.381 10.46 6.41 39.51 5.19
4586 7264 0.038526 TCAAGAAGGAAGTCGACGCC 60.039 55.000 19.04 19.04 0.00 5.68
4589 7267 1.514443 GAAGGAAGTCGACGCCGAG 60.514 63.158 20.04 0.00 46.52 4.63
4590 7268 1.919956 GAAGGAAGTCGACGCCGAGA 61.920 60.000 20.04 0.00 46.52 4.04
4591 7269 2.197643 AAGGAAGTCGACGCCGAGAC 62.198 60.000 20.04 8.84 46.52 3.36
4592 7270 2.573689 GAAGTCGACGCCGAGACG 60.574 66.667 10.46 4.76 46.52 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.319198 GTCGGGGCTCAGGTCCAA 61.319 66.667 0.00 0.00 39.39 3.53
120 124 2.551938 GCCTTTGCTGACTCCTTCTCTT 60.552 50.000 0.00 0.00 33.53 2.85
121 125 1.003003 GCCTTTGCTGACTCCTTCTCT 59.997 52.381 0.00 0.00 33.53 3.10
122 126 1.447945 GCCTTTGCTGACTCCTTCTC 58.552 55.000 0.00 0.00 33.53 2.87
133 137 4.416738 GGCTCCTCCGCCTTTGCT 62.417 66.667 0.00 0.00 46.63 3.91
192 196 1.656652 AAATGGGCGATGAGAAGACG 58.343 50.000 0.00 0.00 0.00 4.18
267 276 4.493286 CGTTTTCGCGCGGTAAAA 57.507 50.000 31.69 25.51 36.22 1.52
293 306 4.509970 CACTGACAAAAACCTCGTATCACA 59.490 41.667 0.00 0.00 0.00 3.58
392 407 0.106918 ACAAAAGGGCACTTCGGACA 60.107 50.000 0.00 0.00 35.41 4.02
401 416 1.680735 CAGCAAGTGTACAAAAGGGCA 59.319 47.619 0.00 0.00 0.00 5.36
413 436 3.119173 TGAGGAAACCAAAACAGCAAGTG 60.119 43.478 0.00 0.00 0.00 3.16
435 458 4.136796 TCTGTAACTACGTACACCACTGT 58.863 43.478 0.00 0.00 30.81 3.55
489 512 5.295292 CCTGCATGGATAAAACTCAGTACAG 59.705 44.000 0.00 0.00 38.35 2.74
490 513 5.185454 CCTGCATGGATAAAACTCAGTACA 58.815 41.667 0.00 0.00 38.35 2.90
495 518 3.737559 ACCCTGCATGGATAAAACTCA 57.262 42.857 15.66 0.00 38.35 3.41
504 527 0.846015 CCCTCATAACCCTGCATGGA 59.154 55.000 15.66 0.00 38.35 3.41
506 529 2.439507 ACTACCCTCATAACCCTGCATG 59.560 50.000 0.00 0.00 0.00 4.06
524 547 3.975312 TGGTAACTCAACCTTGGGAACTA 59.025 43.478 0.00 0.00 40.44 2.24
525 548 2.781174 TGGTAACTCAACCTTGGGAACT 59.219 45.455 0.00 0.00 40.44 3.01
526 549 2.882761 GTGGTAACTCAACCTTGGGAAC 59.117 50.000 0.00 0.00 40.44 3.62
527 550 2.485835 CGTGGTAACTCAACCTTGGGAA 60.486 50.000 0.00 0.00 40.44 3.97
528 551 1.071071 CGTGGTAACTCAACCTTGGGA 59.929 52.381 0.00 0.00 40.44 4.37
529 552 1.519408 CGTGGTAACTCAACCTTGGG 58.481 55.000 0.00 0.00 40.44 4.12
530 553 0.872388 GCGTGGTAACTCAACCTTGG 59.128 55.000 0.00 0.00 40.44 3.61
531 554 0.511221 CGCGTGGTAACTCAACCTTG 59.489 55.000 0.00 0.00 40.44 3.61
532 555 0.601841 CCGCGTGGTAACTCAACCTT 60.602 55.000 6.91 0.00 40.44 3.50
533 556 1.005394 CCGCGTGGTAACTCAACCT 60.005 57.895 6.91 0.00 40.44 3.50
534 557 2.674084 GCCGCGTGGTAACTCAACC 61.674 63.158 17.91 0.00 40.19 3.77
535 558 1.500512 TTGCCGCGTGGTAACTCAAC 61.501 55.000 14.95 0.00 34.64 3.18
536 559 1.225376 CTTGCCGCGTGGTAACTCAA 61.225 55.000 14.95 9.41 34.64 3.02
537 560 1.666553 CTTGCCGCGTGGTAACTCA 60.667 57.895 14.95 0.88 34.64 3.41
549 572 3.799755 GGCTAACCACGCTTGCCG 61.800 66.667 0.00 0.00 44.21 5.69
561 584 5.694231 TTGAGAATATACGTAGCGGCTAA 57.306 39.130 11.98 0.00 0.00 3.09
566 589 4.383052 CCTGCTTTGAGAATATACGTAGCG 59.617 45.833 0.08 0.00 0.00 4.26
569 592 5.529791 GCTCCTGCTTTGAGAATATACGTA 58.470 41.667 0.00 0.00 36.03 3.57
572 595 4.621991 TCGCTCCTGCTTTGAGAATATAC 58.378 43.478 2.50 0.00 36.97 1.47
573 596 4.342378 ACTCGCTCCTGCTTTGAGAATATA 59.658 41.667 2.50 0.00 36.97 0.86
574 597 3.133721 ACTCGCTCCTGCTTTGAGAATAT 59.866 43.478 2.50 0.00 36.97 1.28
575 598 2.497675 ACTCGCTCCTGCTTTGAGAATA 59.502 45.455 2.50 0.00 36.97 1.75
576 599 1.277557 ACTCGCTCCTGCTTTGAGAAT 59.722 47.619 2.50 0.00 36.97 2.40
577 600 0.681733 ACTCGCTCCTGCTTTGAGAA 59.318 50.000 2.50 0.00 36.97 2.87
578 601 0.681733 AACTCGCTCCTGCTTTGAGA 59.318 50.000 2.50 0.00 36.97 3.27
579 602 1.074752 GAACTCGCTCCTGCTTTGAG 58.925 55.000 0.00 0.00 36.97 3.02
580 603 0.320771 GGAACTCGCTCCTGCTTTGA 60.321 55.000 0.00 0.00 36.97 2.69
581 604 0.603707 TGGAACTCGCTCCTGCTTTG 60.604 55.000 0.00 0.00 36.35 2.77
584 607 2.659610 GTGGAACTCGCTCCTGCT 59.340 61.111 0.00 0.00 36.35 4.24
596 619 1.064017 AGCACAAACTCCCAAGTGGAA 60.064 47.619 0.00 0.00 44.57 3.53
597 620 0.550914 AGCACAAACTCCCAAGTGGA 59.449 50.000 0.00 0.00 42.41 4.02
598 621 0.670162 CAGCACAAACTCCCAAGTGG 59.330 55.000 0.00 0.00 35.36 4.00
599 622 0.031178 GCAGCACAAACTCCCAAGTG 59.969 55.000 0.00 0.00 35.36 3.16
600 623 0.106519 AGCAGCACAAACTCCCAAGT 60.107 50.000 0.00 0.00 37.32 3.16
601 624 0.313043 CAGCAGCACAAACTCCCAAG 59.687 55.000 0.00 0.00 0.00 3.61
602 625 0.106769 TCAGCAGCACAAACTCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
603 626 0.106769 TTCAGCAGCACAAACTCCCA 60.107 50.000 0.00 0.00 0.00 4.37
619 676 3.973206 TCCAGTCTAAAATCGGCTTCA 57.027 42.857 0.00 0.00 0.00 3.02
623 680 3.596214 TCTGTTCCAGTCTAAAATCGGC 58.404 45.455 0.00 0.00 32.61 5.54
624 681 6.403636 CCATTTCTGTTCCAGTCTAAAATCGG 60.404 42.308 0.00 0.00 32.61 4.18
632 689 5.246981 TCAATCCATTTCTGTTCCAGTCT 57.753 39.130 0.00 0.00 32.61 3.24
640 697 7.124599 TCCAGCAAATAATCAATCCATTTCTGT 59.875 33.333 0.00 0.00 0.00 3.41
642 699 7.343833 ACTCCAGCAAATAATCAATCCATTTCT 59.656 33.333 0.00 0.00 0.00 2.52
653 710 3.381590 GGGACCAACTCCAGCAAATAATC 59.618 47.826 0.00 0.00 41.63 1.75
654 711 3.245586 TGGGACCAACTCCAGCAAATAAT 60.246 43.478 0.00 0.00 41.63 1.28
655 712 2.109128 TGGGACCAACTCCAGCAAATAA 59.891 45.455 0.00 0.00 41.63 1.40
656 713 1.707989 TGGGACCAACTCCAGCAAATA 59.292 47.619 0.00 0.00 41.63 1.40
657 714 0.482446 TGGGACCAACTCCAGCAAAT 59.518 50.000 0.00 0.00 41.63 2.32
658 715 0.482446 ATGGGACCAACTCCAGCAAA 59.518 50.000 0.00 0.00 41.63 3.68
659 716 0.482446 AATGGGACCAACTCCAGCAA 59.518 50.000 0.00 0.00 41.63 3.91
660 717 0.482446 AAATGGGACCAACTCCAGCA 59.518 50.000 0.00 0.00 41.63 4.41
661 718 1.632589 AAAATGGGACCAACTCCAGC 58.367 50.000 0.00 0.00 41.63 4.85
662 719 4.301072 TCTAAAATGGGACCAACTCCAG 57.699 45.455 0.00 0.00 41.63 3.86
663 720 4.290985 TGATCTAAAATGGGACCAACTCCA 59.709 41.667 0.00 0.00 41.63 3.86
664 721 4.855340 TGATCTAAAATGGGACCAACTCC 58.145 43.478 0.00 0.00 38.55 3.85
665 722 5.745227 TCTGATCTAAAATGGGACCAACTC 58.255 41.667 0.00 0.00 0.00 3.01
666 723 5.779241 TCTGATCTAAAATGGGACCAACT 57.221 39.130 0.00 0.00 0.00 3.16
667 724 5.946377 AGTTCTGATCTAAAATGGGACCAAC 59.054 40.000 0.00 0.00 0.00 3.77
668 725 5.945784 CAGTTCTGATCTAAAATGGGACCAA 59.054 40.000 0.00 0.00 0.00 3.67
669 726 5.014123 ACAGTTCTGATCTAAAATGGGACCA 59.986 40.000 6.83 0.00 0.00 4.02
670 727 5.501156 ACAGTTCTGATCTAAAATGGGACC 58.499 41.667 6.83 0.00 0.00 4.46
671 728 6.410540 AGACAGTTCTGATCTAAAATGGGAC 58.589 40.000 6.83 4.67 0.00 4.46
672 729 6.627087 AGACAGTTCTGATCTAAAATGGGA 57.373 37.500 6.83 0.00 0.00 4.37
673 730 7.989741 ACATAGACAGTTCTGATCTAAAATGGG 59.010 37.037 6.83 1.57 32.75 4.00
674 731 8.824781 CACATAGACAGTTCTGATCTAAAATGG 58.175 37.037 6.83 3.51 32.75 3.16
675 732 9.591792 TCACATAGACAGTTCTGATCTAAAATG 57.408 33.333 6.83 0.57 32.75 2.32
678 735 9.591792 CAATCACATAGACAGTTCTGATCTAAA 57.408 33.333 6.83 0.00 32.75 1.85
679 736 8.971073 TCAATCACATAGACAGTTCTGATCTAA 58.029 33.333 6.83 0.00 32.75 2.10
680 737 8.525290 TCAATCACATAGACAGTTCTGATCTA 57.475 34.615 6.83 9.72 32.75 1.98
681 738 7.415592 TCAATCACATAGACAGTTCTGATCT 57.584 36.000 6.83 8.08 32.75 2.75
682 739 7.710044 ACATCAATCACATAGACAGTTCTGATC 59.290 37.037 6.83 1.44 32.75 2.92
683 740 7.494952 CACATCAATCACATAGACAGTTCTGAT 59.505 37.037 6.83 0.00 32.75 2.90
684 741 6.815142 CACATCAATCACATAGACAGTTCTGA 59.185 38.462 6.83 0.00 32.75 3.27
685 742 6.592994 ACACATCAATCACATAGACAGTTCTG 59.407 38.462 0.00 0.00 32.75 3.02
686 743 6.592994 CACACATCAATCACATAGACAGTTCT 59.407 38.462 0.00 0.00 35.66 3.01
687 744 6.369890 ACACACATCAATCACATAGACAGTTC 59.630 38.462 0.00 0.00 0.00 3.01
688 745 6.233434 ACACACATCAATCACATAGACAGTT 58.767 36.000 0.00 0.00 0.00 3.16
689 746 5.798132 ACACACATCAATCACATAGACAGT 58.202 37.500 0.00 0.00 0.00 3.55
690 747 6.035758 CAGACACACATCAATCACATAGACAG 59.964 42.308 0.00 0.00 0.00 3.51
691 748 5.870978 CAGACACACATCAATCACATAGACA 59.129 40.000 0.00 0.00 0.00 3.41
692 749 6.101997 TCAGACACACATCAATCACATAGAC 58.898 40.000 0.00 0.00 0.00 2.59
693 750 6.284891 TCAGACACACATCAATCACATAGA 57.715 37.500 0.00 0.00 0.00 1.98
694 751 6.815142 TCTTCAGACACACATCAATCACATAG 59.185 38.462 0.00 0.00 0.00 2.23
695 752 6.700352 TCTTCAGACACACATCAATCACATA 58.300 36.000 0.00 0.00 0.00 2.29
696 753 5.554070 TCTTCAGACACACATCAATCACAT 58.446 37.500 0.00 0.00 0.00 3.21
697 754 4.959723 TCTTCAGACACACATCAATCACA 58.040 39.130 0.00 0.00 0.00 3.58
698 755 4.391216 CCTCTTCAGACACACATCAATCAC 59.609 45.833 0.00 0.00 0.00 3.06
699 756 4.040829 ACCTCTTCAGACACACATCAATCA 59.959 41.667 0.00 0.00 0.00 2.57
700 757 4.391216 CACCTCTTCAGACACACATCAATC 59.609 45.833 0.00 0.00 0.00 2.67
701 758 4.321718 CACCTCTTCAGACACACATCAAT 58.678 43.478 0.00 0.00 0.00 2.57
702 759 3.494924 CCACCTCTTCAGACACACATCAA 60.495 47.826 0.00 0.00 0.00 2.57
703 760 2.037641 CCACCTCTTCAGACACACATCA 59.962 50.000 0.00 0.00 0.00 3.07
704 761 2.613977 CCCACCTCTTCAGACACACATC 60.614 54.545 0.00 0.00 0.00 3.06
705 762 1.349026 CCCACCTCTTCAGACACACAT 59.651 52.381 0.00 0.00 0.00 3.21
706 763 0.758734 CCCACCTCTTCAGACACACA 59.241 55.000 0.00 0.00 0.00 3.72
707 764 1.048601 TCCCACCTCTTCAGACACAC 58.951 55.000 0.00 0.00 0.00 3.82
708 765 1.801242 TTCCCACCTCTTCAGACACA 58.199 50.000 0.00 0.00 0.00 3.72
709 766 2.930826 TTTCCCACCTCTTCAGACAC 57.069 50.000 0.00 0.00 0.00 3.67
710 767 3.435026 CCTTTTTCCCACCTCTTCAGACA 60.435 47.826 0.00 0.00 0.00 3.41
711 768 3.149981 CCTTTTTCCCACCTCTTCAGAC 58.850 50.000 0.00 0.00 0.00 3.51
712 769 2.108250 CCCTTTTTCCCACCTCTTCAGA 59.892 50.000 0.00 0.00 0.00 3.27
713 770 2.519013 CCCTTTTTCCCACCTCTTCAG 58.481 52.381 0.00 0.00 0.00 3.02
717 774 0.404346 TCCCCCTTTTTCCCACCTCT 60.404 55.000 0.00 0.00 0.00 3.69
726 783 5.365605 ACGATTTTCTTTCTTCCCCCTTTTT 59.634 36.000 0.00 0.00 0.00 1.94
727 784 4.899457 ACGATTTTCTTTCTTCCCCCTTTT 59.101 37.500 0.00 0.00 0.00 2.27
733 790 3.418047 TGGGACGATTTTCTTTCTTCCC 58.582 45.455 8.00 8.00 46.75 3.97
751 817 4.733542 AATCCCACGGGCGTTGGG 62.734 66.667 14.51 14.51 44.06 4.12
761 827 1.598701 GCAAGTCCCAGCAATCCCAC 61.599 60.000 0.00 0.00 0.00 4.61
763 829 2.054453 GGCAAGTCCCAGCAATCCC 61.054 63.158 0.00 0.00 0.00 3.85
764 830 1.304381 TGGCAAGTCCCAGCAATCC 60.304 57.895 0.00 0.00 0.00 3.01
776 842 0.236711 CTGAAGTGCGAAGTGGCAAG 59.763 55.000 0.00 0.00 45.93 4.01
777 843 0.179059 TCTGAAGTGCGAAGTGGCAA 60.179 50.000 0.00 0.00 45.93 4.52
778 844 0.601046 CTCTGAAGTGCGAAGTGGCA 60.601 55.000 0.00 0.00 41.45 4.92
779 845 1.905922 GCTCTGAAGTGCGAAGTGGC 61.906 60.000 0.00 0.00 0.00 5.01
780 846 2.157421 GCTCTGAAGTGCGAAGTGG 58.843 57.895 0.00 0.00 0.00 4.00
837 909 2.747460 TGCCACTGCAAGATCGGC 60.747 61.111 5.57 5.57 46.66 5.54
865 937 2.040359 GAGGGGGAGGGGAAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
866 938 3.707189 GGAGGGGGAGGGGAAGGA 61.707 72.222 0.00 0.00 0.00 3.36
867 939 3.711782 AGGAGGGGGAGGGGAAGG 61.712 72.222 0.00 0.00 0.00 3.46
868 940 2.040359 GAGGAGGGGGAGGGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
869 941 3.707189 GGAGGAGGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
870 942 4.761304 AGGAGGAGGGGGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
871 943 4.179599 GAGGAGGAGGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
872 944 1.705450 TAGAGGAGGAGGGGGAGGG 60.705 68.421 0.00 0.00 0.00 4.30
873 945 0.703056 TCTAGAGGAGGAGGGGGAGG 60.703 65.000 0.00 0.00 0.00 4.30
874 946 1.357761 GATCTAGAGGAGGAGGGGGAG 59.642 61.905 0.00 0.00 0.00 4.30
875 947 1.462426 GATCTAGAGGAGGAGGGGGA 58.538 60.000 0.00 0.00 0.00 4.81
876 948 0.411848 GGATCTAGAGGAGGAGGGGG 59.588 65.000 0.00 0.00 0.00 5.40
879 951 0.111446 TGCGGATCTAGAGGAGGAGG 59.889 60.000 0.00 0.00 0.00 4.30
889 961 0.389391 GCTGCTTACCTGCGGATCTA 59.611 55.000 0.00 0.00 41.56 1.98
890 962 1.144936 GCTGCTTACCTGCGGATCT 59.855 57.895 0.00 0.00 41.56 2.75
891 963 1.153369 TGCTGCTTACCTGCGGATC 60.153 57.895 0.00 0.00 41.56 3.36
892 964 1.450312 GTGCTGCTTACCTGCGGAT 60.450 57.895 0.00 0.00 41.56 4.18
895 967 1.630244 GACAGTGCTGCTTACCTGCG 61.630 60.000 0.00 0.00 40.88 5.18
911 983 1.413662 GGAGGGGAGAGGATGATGACA 60.414 57.143 0.00 0.00 0.00 3.58
912 984 1.132881 AGGAGGGGAGAGGATGATGAC 60.133 57.143 0.00 0.00 0.00 3.06
913 985 1.148867 GAGGAGGGGAGAGGATGATGA 59.851 57.143 0.00 0.00 0.00 2.92
917 989 1.422531 CAAGAGGAGGGGAGAGGATG 58.577 60.000 0.00 0.00 0.00 3.51
918 990 0.267356 CCAAGAGGAGGGGAGAGGAT 59.733 60.000 0.00 0.00 36.89 3.24
927 1010 1.352083 TCAGGAACACCAAGAGGAGG 58.648 55.000 0.00 0.00 38.69 4.30
932 1015 3.056107 CCGACTAATCAGGAACACCAAGA 60.056 47.826 0.00 0.00 0.00 3.02
935 1018 2.253610 ACCGACTAATCAGGAACACCA 58.746 47.619 0.00 0.00 0.00 4.17
940 1023 3.835978 TGGAGAAACCGACTAATCAGGAA 59.164 43.478 0.00 0.00 42.61 3.36
947 1030 5.240121 GGTGTTAATGGAGAAACCGACTAA 58.760 41.667 0.00 0.00 42.61 2.24
948 1031 4.322953 GGGTGTTAATGGAGAAACCGACTA 60.323 45.833 0.00 0.00 42.61 2.59
949 1032 3.558533 GGGTGTTAATGGAGAAACCGACT 60.559 47.826 0.00 0.00 42.61 4.18
950 1033 2.745821 GGGTGTTAATGGAGAAACCGAC 59.254 50.000 0.00 0.00 42.61 4.79
952 1035 2.486592 GTGGGTGTTAATGGAGAAACCG 59.513 50.000 0.00 0.00 42.61 4.44
959 1042 0.406361 GTGGGGTGGGTGTTAATGGA 59.594 55.000 0.00 0.00 0.00 3.41
962 1045 0.702316 GAGGTGGGGTGGGTGTTAAT 59.298 55.000 0.00 0.00 0.00 1.40
963 1046 1.428718 GGAGGTGGGGTGGGTGTTAA 61.429 60.000 0.00 0.00 0.00 2.01
965 1048 3.182996 GGAGGTGGGGTGGGTGTT 61.183 66.667 0.00 0.00 0.00 3.32
972 1055 4.938756 TGCAAGGGGAGGTGGGGT 62.939 66.667 0.00 0.00 0.00 4.95
973 1056 4.052518 CTGCAAGGGGAGGTGGGG 62.053 72.222 0.00 0.00 0.00 4.96
977 1060 4.357279 GCAGCTGCAAGGGGAGGT 62.357 66.667 33.36 0.00 44.53 3.85
1030 1113 2.359230 GTGGTGGTGCTCCTGCTC 60.359 66.667 6.34 0.00 40.48 4.26
1031 1114 3.958860 GGTGGTGGTGCTCCTGCT 61.959 66.667 6.34 0.00 40.48 4.24
1032 1115 3.909086 GAGGTGGTGGTGCTCCTGC 62.909 68.421 6.34 0.00 40.20 4.85
1033 1116 2.348998 GAGGTGGTGGTGCTCCTG 59.651 66.667 6.34 0.00 34.23 3.86
1034 1117 3.314331 CGAGGTGGTGGTGCTCCT 61.314 66.667 6.34 0.00 34.23 3.69
1083 1169 2.496828 AAGTTACCGCGGGAAGGTCG 62.497 60.000 31.76 0.80 42.81 4.79
1106 1192 3.072476 CCTGAGGAGGTGGTGGTG 58.928 66.667 0.00 0.00 34.16 4.17
1107 1193 2.930562 GCCTGAGGAGGTGGTGGT 60.931 66.667 0.65 0.00 42.15 4.16
1110 1196 1.462238 ACAAGCCTGAGGAGGTGGT 60.462 57.895 0.65 0.00 42.15 4.16
1121 1207 0.179018 GGAGAACACCACACAAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
1122 1208 0.465460 TGGAGAACACCACACAAGCC 60.465 55.000 0.00 0.00 34.77 4.35
1123 1209 1.609208 ATGGAGAACACCACACAAGC 58.391 50.000 0.00 0.00 43.03 4.01
1143 1254 1.606531 GCCCCAGAAGTGCAGATCT 59.393 57.895 0.00 0.00 0.00 2.75
1153 1264 2.158726 ACACTAGTTTTTCGCCCCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
1156 1267 2.351706 AACACTAGTTTTTCGCCCCA 57.648 45.000 0.00 0.00 33.11 4.96
1168 1279 2.287788 CCTGCAGGCAACAAAACACTAG 60.288 50.000 22.33 0.00 41.41 2.57
1170 1281 0.461135 CCTGCAGGCAACAAAACACT 59.539 50.000 22.33 0.00 41.41 3.55
1196 1307 2.617274 GGTGGACAGCAACCGAAGC 61.617 63.158 0.00 0.00 0.00 3.86
1202 1313 0.536006 AGCTTGAGGTGGACAGCAAC 60.536 55.000 4.20 0.00 0.00 4.17
1206 1317 1.972872 ACAAAGCTTGAGGTGGACAG 58.027 50.000 0.00 0.00 0.00 3.51
1214 1325 7.703621 TCAATCAAGAAAAGAACAAAGCTTGAG 59.296 33.333 0.00 0.00 43.14 3.02
1220 1331 7.514125 CGCACTTCAATCAAGAAAAGAACAAAG 60.514 37.037 0.00 0.00 35.82 2.77
1221 1332 6.253298 CGCACTTCAATCAAGAAAAGAACAAA 59.747 34.615 0.00 0.00 35.82 2.83
1222 1333 5.743398 CGCACTTCAATCAAGAAAAGAACAA 59.257 36.000 0.00 0.00 35.82 2.83
1223 1334 5.273170 CGCACTTCAATCAAGAAAAGAACA 58.727 37.500 0.00 0.00 35.82 3.18
1224 1335 4.147133 GCGCACTTCAATCAAGAAAAGAAC 59.853 41.667 0.30 0.00 35.82 3.01
1225 1336 4.290155 GCGCACTTCAATCAAGAAAAGAA 58.710 39.130 0.30 0.00 35.82 2.52
1226 1337 3.304659 GGCGCACTTCAATCAAGAAAAGA 60.305 43.478 10.83 0.00 35.82 2.52
1227 1338 2.982470 GGCGCACTTCAATCAAGAAAAG 59.018 45.455 10.83 0.00 35.82 2.27
1232 1343 2.287788 ACAAAGGCGCACTTCAATCAAG 60.288 45.455 10.83 0.00 38.85 3.02
1236 1347 1.001378 GACACAAAGGCGCACTTCAAT 60.001 47.619 10.83 0.00 38.85 2.57
1245 1356 1.804748 GAAACCCTAGACACAAAGGCG 59.195 52.381 0.00 0.00 0.00 5.52
1247 1358 3.253432 GCAAGAAACCCTAGACACAAAGG 59.747 47.826 0.00 0.00 0.00 3.11
1274 1386 8.439993 TCTATTCTACTCTACTAGCACACAAG 57.560 38.462 0.00 0.00 0.00 3.16
1275 1387 7.499563 CCTCTATTCTACTCTACTAGCACACAA 59.500 40.741 0.00 0.00 0.00 3.33
1278 1390 6.535540 CCCTCTATTCTACTCTACTAGCACA 58.464 44.000 0.00 0.00 0.00 4.57
1279 1391 5.413523 GCCCTCTATTCTACTCTACTAGCAC 59.586 48.000 0.00 0.00 0.00 4.40
1282 1394 5.941647 GGTGCCCTCTATTCTACTCTACTAG 59.058 48.000 0.00 0.00 0.00 2.57
1286 1398 3.498121 CCGGTGCCCTCTATTCTACTCTA 60.498 52.174 0.00 0.00 0.00 2.43
1287 1399 2.588620 CGGTGCCCTCTATTCTACTCT 58.411 52.381 0.00 0.00 0.00 3.24
1290 1402 0.033642 GCCGGTGCCCTCTATTCTAC 59.966 60.000 1.90 0.00 0.00 2.59
1291 1403 0.105658 AGCCGGTGCCCTCTATTCTA 60.106 55.000 1.90 0.00 38.69 2.10
1292 1404 0.983378 AAGCCGGTGCCCTCTATTCT 60.983 55.000 1.90 0.00 38.69 2.40
1293 1405 0.533085 GAAGCCGGTGCCCTCTATTC 60.533 60.000 1.90 0.00 38.69 1.75
1296 1408 3.081409 GGAAGCCGGTGCCCTCTA 61.081 66.667 1.90 0.00 38.69 2.43
1301 1413 2.747855 CTGAAGGAAGCCGGTGCC 60.748 66.667 1.90 1.76 38.69 5.01
1302 1414 1.600916 AACTGAAGGAAGCCGGTGC 60.601 57.895 1.90 0.00 37.95 5.01
1304 1416 0.182775 AACAACTGAAGGAAGCCGGT 59.817 50.000 1.90 0.00 0.00 5.28
1329 1441 2.358258 TCCACCAATCTCCCTTCCTTT 58.642 47.619 0.00 0.00 0.00 3.11
1330 1442 2.059756 TCCACCAATCTCCCTTCCTT 57.940 50.000 0.00 0.00 0.00 3.36
1332 1444 1.143889 GGATCCACCAATCTCCCTTCC 59.856 57.143 6.95 0.00 38.79 3.46
1333 1445 1.143889 GGGATCCACCAATCTCCCTTC 59.856 57.143 15.23 0.00 43.45 3.46
1334 1446 1.226311 GGGATCCACCAATCTCCCTT 58.774 55.000 15.23 0.00 43.45 3.95
1335 1447 2.951690 GGGATCCACCAATCTCCCT 58.048 57.895 15.23 0.00 43.45 4.20
1336 1448 1.143889 GAAGGGATCCACCAATCTCCC 59.856 57.143 15.23 0.00 46.56 4.30
1337 1449 2.131023 AGAAGGGATCCACCAATCTCC 58.869 52.381 15.23 0.00 41.20 3.71
1338 1450 2.774234 TCAGAAGGGATCCACCAATCTC 59.226 50.000 15.23 0.00 41.20 2.75
1339 1451 2.850833 TCAGAAGGGATCCACCAATCT 58.149 47.619 15.23 6.16 41.20 2.40
1340 1452 3.137176 TCATCAGAAGGGATCCACCAATC 59.863 47.826 15.23 3.84 41.20 2.67
1348 1460 5.306678 AGGACTACATTCATCAGAAGGGATC 59.693 44.000 0.00 0.00 39.73 3.36
1352 1472 7.609532 AGAAAAAGGACTACATTCATCAGAAGG 59.390 37.037 0.00 0.00 41.13 3.46
1359 1479 7.004086 TGGAACAGAAAAAGGACTACATTCAT 58.996 34.615 0.00 0.00 0.00 2.57
1379 1499 5.175859 TGAGATTTAGTCGGAATGTGGAAC 58.824 41.667 0.00 0.00 37.35 3.62
1380 1500 5.414789 TGAGATTTAGTCGGAATGTGGAA 57.585 39.130 0.00 0.00 0.00 3.53
1382 1502 5.504665 GCAATGAGATTTAGTCGGAATGTGG 60.505 44.000 0.00 0.00 0.00 4.17
1383 1503 5.505286 GCAATGAGATTTAGTCGGAATGTG 58.495 41.667 0.00 0.00 0.00 3.21
1384 1504 4.271049 CGCAATGAGATTTAGTCGGAATGT 59.729 41.667 0.00 0.00 0.00 2.71
1385 1505 4.507756 TCGCAATGAGATTTAGTCGGAATG 59.492 41.667 0.00 0.00 0.00 2.67
1386 1506 4.693283 TCGCAATGAGATTTAGTCGGAAT 58.307 39.130 0.00 0.00 0.00 3.01
1399 1519 4.424061 TTGGATTTTGTCTCGCAATGAG 57.576 40.909 0.00 0.00 46.72 2.90
1400 1520 4.218200 ACATTGGATTTTGTCTCGCAATGA 59.782 37.500 2.69 0.00 36.22 2.57
1405 1525 3.559238 ACACATTGGATTTTGTCTCGC 57.441 42.857 0.00 0.00 0.00 5.03
1409 1529 6.803320 CAGTCATGTACACATTGGATTTTGTC 59.197 38.462 0.00 0.00 33.61 3.18
1416 1548 5.425217 ACCTATCAGTCATGTACACATTGGA 59.575 40.000 0.00 0.00 33.61 3.53
1421 1553 7.712204 TTCTTACCTATCAGTCATGTACACA 57.288 36.000 0.00 0.00 0.00 3.72
1422 1554 7.220300 CGTTTCTTACCTATCAGTCATGTACAC 59.780 40.741 0.00 0.00 0.00 2.90
1438 1570 5.183904 TCTGTTACTCCTACCGTTTCTTACC 59.816 44.000 0.00 0.00 0.00 2.85
1443 1575 5.163884 GCAATTCTGTTACTCCTACCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
1448 1580 2.608090 GCGCAATTCTGTTACTCCTACC 59.392 50.000 0.30 0.00 0.00 3.18
1453 1585 3.058224 AGTTTGGCGCAATTCTGTTACTC 60.058 43.478 10.83 0.00 0.00 2.59
1491 1624 0.882927 TGCCCAAGTAACTGTCGTGC 60.883 55.000 0.00 0.00 0.00 5.34
1492 1625 0.865769 GTGCCCAAGTAACTGTCGTG 59.134 55.000 0.00 0.00 0.00 4.35
1493 1626 0.466543 TGTGCCCAAGTAACTGTCGT 59.533 50.000 0.00 0.00 0.00 4.34
1509 1642 3.194329 TCCTCTCTATGCACTGTCTTGTG 59.806 47.826 0.00 0.00 40.62 3.33
1513 1646 2.291865 TGGTCCTCTCTATGCACTGTCT 60.292 50.000 0.00 0.00 0.00 3.41
1529 1666 3.813724 GGTTCAACTGAAACTAGTGGTCC 59.186 47.826 0.00 0.00 38.65 4.46
1532 1669 2.806244 CCGGTTCAACTGAAACTAGTGG 59.194 50.000 0.00 0.00 39.51 4.00
1545 1682 3.181474 GGAAACCATGTTTTCCGGTTCAA 60.181 43.478 17.78 0.00 43.95 2.69
1546 1683 2.362717 GGAAACCATGTTTTCCGGTTCA 59.637 45.455 17.78 0.00 43.95 3.18
1578 1719 8.364142 TGGTAGTTATGAGGAAAACAATTTTGG 58.636 33.333 0.00 0.00 31.94 3.28
1621 1763 9.573133 GATGGAATGTGAAACTACAAAATAAGG 57.427 33.333 0.00 0.00 38.04 2.69
1637 1779 6.881065 TCTCCTTCAAACTTAGATGGAATGTG 59.119 38.462 0.00 0.00 38.42 3.21
1638 1780 7.020827 TCTCCTTCAAACTTAGATGGAATGT 57.979 36.000 0.00 0.00 38.42 2.71
1640 1782 8.964772 CATTTCTCCTTCAAACTTAGATGGAAT 58.035 33.333 0.00 0.00 38.42 3.01
1651 1800 6.878389 ACAGAGATCTCATTTCTCCTTCAAAC 59.122 38.462 24.39 0.00 40.43 2.93
1695 1844 6.019748 TCCTAGAGAGAATGGACAGTTTTCT 58.980 40.000 0.00 0.00 32.56 2.52
1721 1870 3.555324 TTGTGTCAGCCTGCCCGA 61.555 61.111 0.00 0.00 0.00 5.14
1723 1872 0.035056 ATAGTTGTGTCAGCCTGCCC 60.035 55.000 0.00 0.00 0.00 5.36
1725 1874 2.393271 AGATAGTTGTGTCAGCCTGC 57.607 50.000 0.00 0.00 0.00 4.85
1755 1904 6.106673 GTGTGTAGGCAATGTCTGTAGTAAT 58.893 40.000 0.00 0.00 0.00 1.89
1756 1905 5.011227 TGTGTGTAGGCAATGTCTGTAGTAA 59.989 40.000 0.00 0.00 0.00 2.24
1757 1906 4.525100 TGTGTGTAGGCAATGTCTGTAGTA 59.475 41.667 0.00 0.00 0.00 1.82
1758 1907 3.323691 TGTGTGTAGGCAATGTCTGTAGT 59.676 43.478 0.00 0.00 0.00 2.73
1774 1923 2.494059 GATGCTGTTACAGGTGTGTGT 58.506 47.619 14.63 0.00 37.52 3.72
1775 1924 1.806542 GGATGCTGTTACAGGTGTGTG 59.193 52.381 14.63 0.00 37.52 3.82
1828 2072 6.713450 GGAGAGTTTCTATTGGGTGTTTTACA 59.287 38.462 0.00 0.00 0.00 2.41
1863 2107 3.548745 AATCTGACCAGATGCGAATCA 57.451 42.857 12.73 0.00 46.75 2.57
1868 2112 2.094894 GTGACAAATCTGACCAGATGCG 59.905 50.000 12.73 9.54 46.75 4.73
1872 2116 4.141505 TGGAAAGTGACAAATCTGACCAGA 60.142 41.667 1.83 1.83 42.37 3.86
1903 2147 5.840715 TCAAATTGCACAATGCTGAAAGTA 58.159 33.333 2.02 0.00 45.31 2.24
1954 2198 2.422832 GGACTGTTAGACTGGTAGACGG 59.577 54.545 0.00 0.00 0.00 4.79
1966 2212 0.034896 ACAAGGGCGTGGACTGTTAG 59.965 55.000 0.00 0.00 0.00 2.34
1977 2223 2.859273 AATCTCCTGCGACAAGGGCG 62.859 60.000 0.00 0.00 37.96 6.13
2076 2322 5.489792 ACACAGATTACAGTGGAATGTCT 57.510 39.130 4.97 0.00 37.75 3.41
2116 2362 1.211457 ACTGAAGGGTCATCATCCAGC 59.789 52.381 0.00 0.00 31.85 4.85
2368 2616 8.598075 CAAACAATTTTCTTCAGGTCAAAAGAG 58.402 33.333 0.00 0.00 33.32 2.85
2369 2617 7.064490 GCAAACAATTTTCTTCAGGTCAAAAGA 59.936 33.333 0.00 0.00 0.00 2.52
2391 2639 2.247358 GGACTTCTTTGGATGGGCAAA 58.753 47.619 0.00 0.00 0.00 3.68
2410 2658 0.326264 CCTCAAGAGGGAACTGGTGG 59.674 60.000 8.28 0.00 44.87 4.61
2486 2734 4.002797 GCCTGGGTGTGGCTTTAG 57.997 61.111 0.00 0.00 46.38 1.85
2581 2829 1.000163 TCCTCGAGTGCTGAACAGTTC 60.000 52.381 12.31 6.32 29.71 3.01
2690 2941 0.109689 GACTCAACCGTCTCGACAGG 60.110 60.000 0.00 2.75 0.00 4.00
3137 3407 3.357079 GTCTGCAGTTGGGGTGCG 61.357 66.667 14.67 0.00 44.35 5.34
3158 3428 0.473755 TGGCACTCACATCCAAGTGT 59.526 50.000 4.62 0.00 43.82 3.55
3184 3454 6.522054 ACCATCTGTTTATCTACCAATACCG 58.478 40.000 0.00 0.00 0.00 4.02
3214 3488 3.251571 GTCCGAGTACACATGTCTTTCC 58.748 50.000 0.00 0.00 0.00 3.13
3254 3528 4.973396 TCATCTGCATTTGAAAGTTAGCG 58.027 39.130 0.00 0.00 0.00 4.26
3343 3617 4.754114 GGACAGTCTTAAGATGATCATGGC 59.246 45.833 14.30 0.00 0.00 4.40
3400 3674 2.147958 GGATACAACACGCCAGTTCAA 58.852 47.619 0.00 0.00 0.00 2.69
3472 3746 3.559655 GTCAGCATAACCACATATTGCGA 59.440 43.478 0.00 0.00 0.00 5.10
3482 3756 4.574674 ATTCTTCAGGTCAGCATAACCA 57.425 40.909 5.16 0.00 39.39 3.67
3610 3884 3.596214 ACGGTACACAGAAATAGGCTTG 58.404 45.455 0.00 0.00 0.00 4.01
3637 3911 2.401766 GCACCAGAACCCGCTGATG 61.402 63.158 0.00 0.00 38.14 3.07
3650 3924 1.906333 TCTGAGCCGTGTAGCACCA 60.906 57.895 0.00 0.00 34.23 4.17
3671 3945 3.929948 GATACAGCACGCCAGCGC 61.930 66.667 12.72 0.00 44.19 5.92
3710 3984 1.611673 GGGCTGTACTGTCATGTGCTT 60.612 52.381 6.69 0.00 0.00 3.91
3711 3985 0.036010 GGGCTGTACTGTCATGTGCT 60.036 55.000 6.69 0.00 0.00 4.40
3713 3987 1.676916 CCAGGGCTGTACTGTCATGTG 60.677 57.143 16.15 5.87 34.16 3.21
3743 4017 0.460635 TTAGCACAACGGCGTATCCC 60.461 55.000 15.20 2.46 39.27 3.85
3749 4023 2.677003 CCAGGTTAGCACAACGGCG 61.677 63.158 4.80 4.80 39.27 6.46
3756 4030 3.131396 CCGATATTCACCAGGTTAGCAC 58.869 50.000 0.00 0.00 0.00 4.40
3785 4059 7.027874 TGTGAACCCTTGGTATAAATCTTCT 57.972 36.000 0.00 0.00 33.12 2.85
3794 4068 2.291540 CCCACATGTGAACCCTTGGTAT 60.292 50.000 27.46 0.00 33.12 2.73
3807 4081 1.891919 GTGTGTCGTGCCCACATGT 60.892 57.895 0.00 0.00 44.03 3.21
3810 4084 3.454587 GAGGTGTGTCGTGCCCACA 62.455 63.158 0.00 0.00 40.35 4.17
3822 4096 4.421479 CGAAGCGCTCCGAGGTGT 62.421 66.667 11.99 0.00 0.00 4.16
3879 4153 3.017048 TGGGGAAATGACATAGGCTTG 57.983 47.619 0.00 0.00 0.00 4.01
3899 4173 8.547967 ACAAAATCGTTTGATAGTACACAGAT 57.452 30.769 6.21 0.00 45.99 2.90
3920 4194 5.728471 TCAACTTTGAAAAGGCATGACAAA 58.272 33.333 0.00 0.00 40.31 2.83
3942 4216 2.570181 GCAGCACCAGCCAACATC 59.430 61.111 0.00 0.00 43.56 3.06
3960 4234 2.612219 AAACAAGCACACGCACAGGC 62.612 55.000 0.00 0.00 42.27 4.85
3971 4245 6.238731 CCTGAAGAACACATAGAAAACAAGCA 60.239 38.462 0.00 0.00 0.00 3.91
4063 4438 4.065321 AGAGAAAAGACCATATGGCTCG 57.935 45.455 22.18 0.00 39.32 5.03
4196 4578 2.428530 TGTTCTGGATGACTCGAGATGG 59.571 50.000 21.68 0.00 36.31 3.51
4202 4584 3.859961 GTGTACATGTTCTGGATGACTCG 59.140 47.826 2.30 0.00 0.00 4.18
4210 4592 6.558771 TCAAATTCTGTGTACATGTTCTGG 57.441 37.500 2.30 0.00 0.00 3.86
4213 4595 6.380995 TGCATCAAATTCTGTGTACATGTTC 58.619 36.000 2.30 0.00 0.00 3.18
4233 4637 4.382254 CCAGCCAAGTGAAATTACATGCAT 60.382 41.667 0.00 0.00 0.00 3.96
4241 4645 1.342174 CAGTGCCAGCCAAGTGAAATT 59.658 47.619 0.00 0.00 0.00 1.82
4281 4685 3.360533 CTTGCGCTAGAAAATGAGCATG 58.639 45.455 13.92 0.00 38.63 4.06
4328 4732 8.060931 TGAAACATGCTATAAAAACCATGCTA 57.939 30.769 0.00 0.00 38.83 3.49
4335 4740 6.071616 TCACCCCTGAAACATGCTATAAAAAC 60.072 38.462 0.00 0.00 0.00 2.43
4375 4780 2.350007 GCCTGTATGCGTTCGTGAAAAA 60.350 45.455 0.00 0.00 0.00 1.94
4376 4781 1.195900 GCCTGTATGCGTTCGTGAAAA 59.804 47.619 0.00 0.00 0.00 2.29
4377 4782 0.793861 GCCTGTATGCGTTCGTGAAA 59.206 50.000 0.00 0.00 0.00 2.69
4379 4784 4.178861 GCCTGTATGCGTTCGTGA 57.821 55.556 0.00 0.00 0.00 4.35
4387 4792 0.378257 CCATGTTCACGCCTGTATGC 59.622 55.000 0.00 0.00 0.00 3.14
4388 4793 1.398041 CACCATGTTCACGCCTGTATG 59.602 52.381 0.00 0.00 0.00 2.39
4389 4794 1.003118 ACACCATGTTCACGCCTGTAT 59.997 47.619 0.00 0.00 0.00 2.29
4390 4795 0.394938 ACACCATGTTCACGCCTGTA 59.605 50.000 0.00 0.00 0.00 2.74
4391 4796 0.884704 GACACCATGTTCACGCCTGT 60.885 55.000 0.00 0.00 0.00 4.00
4392 4797 1.577328 GGACACCATGTTCACGCCTG 61.577 60.000 0.00 0.00 0.00 4.85
4393 4798 1.302511 GGACACCATGTTCACGCCT 60.303 57.895 0.00 0.00 0.00 5.52
4395 4800 2.677003 CCGGACACCATGTTCACGC 61.677 63.158 0.00 0.00 0.00 5.34
4396 4801 1.005512 TCCGGACACCATGTTCACG 60.006 57.895 0.00 0.00 0.00 4.35
4397 4802 1.298859 GCTCCGGACACCATGTTCAC 61.299 60.000 0.00 0.00 0.00 3.18
4398 4803 1.003839 GCTCCGGACACCATGTTCA 60.004 57.895 0.00 0.00 0.00 3.18
4399 4804 1.003839 TGCTCCGGACACCATGTTC 60.004 57.895 0.00 0.00 0.00 3.18
4401 4806 1.892819 CTCTGCTCCGGACACCATGT 61.893 60.000 0.00 0.00 0.00 3.21
4402 4807 1.153489 CTCTGCTCCGGACACCATG 60.153 63.158 0.00 0.00 0.00 3.66
4403 4808 1.305297 TCTCTGCTCCGGACACCAT 60.305 57.895 0.00 0.00 0.00 3.55
4404 4809 1.979155 CTCTCTGCTCCGGACACCA 60.979 63.158 0.00 0.00 0.00 4.17
4405 4810 1.679305 TCTCTCTGCTCCGGACACC 60.679 63.158 0.00 0.00 0.00 4.16
4407 4812 0.539669 TTGTCTCTCTGCTCCGGACA 60.540 55.000 0.00 2.99 35.51 4.02
4410 4815 1.515020 CCTTGTCTCTCTGCTCCGG 59.485 63.158 0.00 0.00 0.00 5.14
4411 4816 0.967887 TCCCTTGTCTCTCTGCTCCG 60.968 60.000 0.00 0.00 0.00 4.63
4412 4817 1.138661 CATCCCTTGTCTCTCTGCTCC 59.861 57.143 0.00 0.00 0.00 4.70
4413 4818 1.473080 GCATCCCTTGTCTCTCTGCTC 60.473 57.143 0.00 0.00 0.00 4.26
4414 4819 0.540923 GCATCCCTTGTCTCTCTGCT 59.459 55.000 0.00 0.00 0.00 4.24
4415 4820 0.540923 AGCATCCCTTGTCTCTCTGC 59.459 55.000 0.00 0.00 0.00 4.26
4416 4821 1.829849 TGAGCATCCCTTGTCTCTCTG 59.170 52.381 0.00 0.00 32.80 3.35
4417 4822 2.109774 CTGAGCATCCCTTGTCTCTCT 58.890 52.381 0.00 0.00 32.80 3.10
4419 4824 0.540923 GCTGAGCATCCCTTGTCTCT 59.459 55.000 0.00 0.00 32.80 3.10
4421 4826 1.606531 GGCTGAGCATCCCTTGTCT 59.393 57.895 6.82 0.00 0.00 3.41
4422 4827 1.452833 GGGCTGAGCATCCCTTGTC 60.453 63.158 6.82 0.00 39.46 3.18
4424 4829 2.515523 CGGGCTGAGCATCCCTTG 60.516 66.667 6.82 0.00 40.41 3.61
4425 4830 2.300967 TTCGGGCTGAGCATCCCTT 61.301 57.895 6.82 0.00 40.41 3.95
4426 4831 2.688666 TTCGGGCTGAGCATCCCT 60.689 61.111 6.82 0.00 40.41 4.20
4427 4832 2.514824 GTTCGGGCTGAGCATCCC 60.515 66.667 6.82 0.00 39.17 3.85
4439 4937 1.484653 TGTGATGTATCCCCTGTTCGG 59.515 52.381 0.00 0.00 0.00 4.30
4441 4939 2.171448 AGCTGTGATGTATCCCCTGTTC 59.829 50.000 0.00 0.00 0.00 3.18
4447 4945 4.423625 AGGTTTAGCTGTGATGTATCCC 57.576 45.455 0.00 0.00 0.00 3.85
4451 4949 5.748670 TTGGTAGGTTTAGCTGTGATGTA 57.251 39.130 0.00 0.00 0.00 2.29
4452 4950 4.634012 TTGGTAGGTTTAGCTGTGATGT 57.366 40.909 0.00 0.00 0.00 3.06
4453 4951 4.156008 GGTTTGGTAGGTTTAGCTGTGATG 59.844 45.833 0.00 0.00 0.00 3.07
4454 4952 4.332828 GGTTTGGTAGGTTTAGCTGTGAT 58.667 43.478 0.00 0.00 0.00 3.06
4455 4953 3.497227 GGGTTTGGTAGGTTTAGCTGTGA 60.497 47.826 0.00 0.00 0.00 3.58
4456 4954 2.817844 GGGTTTGGTAGGTTTAGCTGTG 59.182 50.000 0.00 0.00 0.00 3.66
4458 4956 2.081462 CGGGTTTGGTAGGTTTAGCTG 58.919 52.381 0.00 0.00 0.00 4.24
4475 7153 1.135024 CATTGCCATTCTTGGTTCGGG 60.135 52.381 0.00 0.00 45.57 5.14
4476 7154 1.736696 GCATTGCCATTCTTGGTTCGG 60.737 52.381 0.00 0.00 45.57 4.30
4489 7167 2.824071 CTTGCTGGTTCGGCATTGCC 62.824 60.000 18.10 18.10 45.64 4.52
4490 7168 1.444895 CTTGCTGGTTCGGCATTGC 60.445 57.895 0.00 0.00 45.64 3.56
4492 7170 1.549203 ATTCTTGCTGGTTCGGCATT 58.451 45.000 2.04 0.00 45.64 3.56
4493 7171 1.474077 GAATTCTTGCTGGTTCGGCAT 59.526 47.619 2.04 0.00 45.64 4.40
4494 7172 0.881118 GAATTCTTGCTGGTTCGGCA 59.119 50.000 0.00 0.00 44.61 5.69
4495 7173 0.171231 GGAATTCTTGCTGGTTCGGC 59.829 55.000 5.23 0.00 36.10 5.54
4496 7174 1.533625 TGGAATTCTTGCTGGTTCGG 58.466 50.000 5.23 0.00 0.00 4.30
4498 7176 4.022068 TGATGTTGGAATTCTTGCTGGTTC 60.022 41.667 5.23 0.00 0.00 3.62
4499 7177 3.896888 TGATGTTGGAATTCTTGCTGGTT 59.103 39.130 5.23 0.00 0.00 3.67
4500 7178 3.256631 GTGATGTTGGAATTCTTGCTGGT 59.743 43.478 5.23 0.00 0.00 4.00
4504 7182 5.643379 TTAGGTGATGTTGGAATTCTTGC 57.357 39.130 5.23 0.00 0.00 4.01
4506 7184 4.706962 GGCTTAGGTGATGTTGGAATTCTT 59.293 41.667 5.23 0.00 0.00 2.52
4507 7185 4.263905 TGGCTTAGGTGATGTTGGAATTCT 60.264 41.667 5.23 0.00 0.00 2.40
4508 7186 4.016444 TGGCTTAGGTGATGTTGGAATTC 58.984 43.478 0.00 0.00 0.00 2.17
4509 7187 4.046286 TGGCTTAGGTGATGTTGGAATT 57.954 40.909 0.00 0.00 0.00 2.17
4510 7188 3.737559 TGGCTTAGGTGATGTTGGAAT 57.262 42.857 0.00 0.00 0.00 3.01
4511 7189 3.517296 TTGGCTTAGGTGATGTTGGAA 57.483 42.857 0.00 0.00 0.00 3.53
4512 7190 3.517296 TTTGGCTTAGGTGATGTTGGA 57.483 42.857 0.00 0.00 0.00 3.53
4513 7191 3.306019 GGTTTTGGCTTAGGTGATGTTGG 60.306 47.826 0.00 0.00 0.00 3.77
4514 7192 3.306019 GGGTTTTGGCTTAGGTGATGTTG 60.306 47.826 0.00 0.00 0.00 3.33
4515 7193 2.897326 GGGTTTTGGCTTAGGTGATGTT 59.103 45.455 0.00 0.00 0.00 2.71
4516 7194 2.525368 GGGTTTTGGCTTAGGTGATGT 58.475 47.619 0.00 0.00 0.00 3.06
4517 7195 1.472480 CGGGTTTTGGCTTAGGTGATG 59.528 52.381 0.00 0.00 0.00 3.07
4518 7196 1.615919 CCGGGTTTTGGCTTAGGTGAT 60.616 52.381 0.00 0.00 0.00 3.06
4519 7197 0.250989 CCGGGTTTTGGCTTAGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
4520 7198 1.248101 CCCGGGTTTTGGCTTAGGTG 61.248 60.000 14.18 0.00 0.00 4.00
4521 7199 1.076014 CCCGGGTTTTGGCTTAGGT 59.924 57.895 14.18 0.00 0.00 3.08
4524 7202 0.537828 GTGTCCCGGGTTTTGGCTTA 60.538 55.000 22.86 0.00 0.00 3.09
4527 7205 3.299977 GGTGTCCCGGGTTTTGGC 61.300 66.667 22.86 6.06 0.00 4.52
4539 7217 3.000080 CTTGTTCGCTCGCGGTGTC 62.000 63.158 6.13 3.21 40.25 3.67
4542 7220 0.525668 CTATCTTGTTCGCTCGCGGT 60.526 55.000 6.13 0.00 40.25 5.68
4543 7221 1.812214 GCTATCTTGTTCGCTCGCGG 61.812 60.000 6.13 0.00 40.25 6.46
4544 7222 1.555538 GCTATCTTGTTCGCTCGCG 59.444 57.895 0.00 0.00 41.35 5.87
4546 7224 1.555538 GCGCTATCTTGTTCGCTCG 59.444 57.895 0.00 0.00 43.70 5.03
4547 7225 0.528684 AGGCGCTATCTTGTTCGCTC 60.529 55.000 7.64 0.00 45.97 5.03
4548 7226 0.108138 AAGGCGCTATCTTGTTCGCT 60.108 50.000 7.64 0.00 45.97 4.93
4549 7227 0.301987 GAAGGCGCTATCTTGTTCGC 59.698 55.000 7.64 0.00 45.99 4.70
4550 7228 1.640428 TGAAGGCGCTATCTTGTTCG 58.360 50.000 7.64 0.00 0.00 3.95
4551 7229 3.262420 TCTTGAAGGCGCTATCTTGTTC 58.738 45.455 7.64 0.20 0.00 3.18
4552 7230 3.334583 TCTTGAAGGCGCTATCTTGTT 57.665 42.857 7.64 0.00 0.00 2.83
4553 7231 3.265791 CTTCTTGAAGGCGCTATCTTGT 58.734 45.455 7.64 0.00 0.00 3.16
4554 7232 2.611292 CCTTCTTGAAGGCGCTATCTTG 59.389 50.000 15.43 3.75 32.43 3.02
4555 7233 2.501723 TCCTTCTTGAAGGCGCTATCTT 59.498 45.455 21.16 1.33 39.80 2.40
4557 7235 2.604046 TCCTTCTTGAAGGCGCTATC 57.396 50.000 21.16 6.70 39.80 2.08
4558 7236 2.237392 ACTTCCTTCTTGAAGGCGCTAT 59.763 45.455 21.16 0.00 44.85 2.97
4560 7238 0.398318 ACTTCCTTCTTGAAGGCGCT 59.602 50.000 21.16 5.84 44.85 5.92
4561 7239 0.799393 GACTTCCTTCTTGAAGGCGC 59.201 55.000 21.16 0.00 44.85 6.53
4563 7241 2.070028 GTCGACTTCCTTCTTGAAGGC 58.930 52.381 21.16 8.97 45.26 4.35
4564 7242 2.329379 CGTCGACTTCCTTCTTGAAGG 58.671 52.381 20.21 20.21 44.85 3.46
4566 7244 1.604693 GGCGTCGACTTCCTTCTTGAA 60.605 52.381 14.70 0.00 0.00 2.69
4568 7246 1.344942 CGGCGTCGACTTCCTTCTTG 61.345 60.000 14.70 0.00 39.00 3.02
4569 7247 1.080705 CGGCGTCGACTTCCTTCTT 60.081 57.895 14.70 0.00 39.00 2.52
4574 7252 2.202453 GTCTCGGCGTCGACTTCC 60.202 66.667 8.66 13.23 40.88 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.