Multiple sequence alignment - TraesCS7D01G517200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G517200 chr7D 100.000 3943 0 0 1 3943 616225202 616221260 0.000000e+00 7282.0
1 TraesCS7D01G517200 chr7D 89.832 895 66 10 1299 2183 616252415 616253294 0.000000e+00 1125.0
2 TraesCS7D01G517200 chr7D 87.592 951 63 25 2804 3732 616255169 616256086 0.000000e+00 1051.0
3 TraesCS7D01G517200 chr7D 85.408 466 26 17 731 1163 616251970 616252426 2.800000e-121 446.0
4 TraesCS7D01G517200 chr7D 82.704 318 31 11 2477 2781 616254655 616254961 1.090000e-65 261.0
5 TraesCS7D01G517200 chr7D 94.286 140 8 0 3798 3937 616256103 616256242 8.580000e-52 215.0
6 TraesCS7D01G517200 chr7A 91.289 1171 48 18 2775 3943 709263243 709264361 0.000000e+00 1548.0
7 TraesCS7D01G517200 chr7A 90.522 1034 78 13 1299 2317 709261607 709262635 0.000000e+00 1349.0
8 TraesCS7D01G517200 chr7A 88.390 267 27 3 2367 2631 709262738 709263002 6.360000e-83 318.0
9 TraesCS7D01G517200 chr7A 81.622 370 56 10 3562 3925 709284033 709284396 2.980000e-76 296.0
10 TraesCS7D01G517200 chr7A 83.972 287 23 10 884 1163 709261348 709261618 1.820000e-63 254.0
11 TraesCS7D01G517200 chr7A 96.739 92 3 0 2688 2779 709263007 709263098 1.900000e-33 154.0
12 TraesCS7D01G517200 chr7B 93.923 757 43 2 1377 2130 709510737 709511493 0.000000e+00 1140.0
13 TraesCS7D01G517200 chr7B 82.385 369 53 11 3563 3925 709590232 709590594 1.060000e-80 311.0
14 TraesCS7D01G517200 chr7B 90.000 120 12 0 3796 3915 711206546 711206427 5.280000e-34 156.0
15 TraesCS7D01G517200 chr7B 87.500 104 11 1 987 1088 709510530 709510633 6.920000e-23 119.0
16 TraesCS7D01G517200 chr7B 92.683 41 3 0 2628 2668 408701482 408701522 4.260000e-05 60.2
17 TraesCS7D01G517200 chr5B 74.507 710 144 31 1392 2077 511852468 511853164 1.400000e-69 274.0
18 TraesCS7D01G517200 chr5B 83.628 226 31 6 1831 2053 656926273 656926495 1.440000e-49 207.0
19 TraesCS7D01G517200 chr5B 75.806 434 80 18 1592 2020 512212863 512213276 3.110000e-46 196.0
20 TraesCS7D01G517200 chr5B 80.556 216 30 10 1804 2013 461292908 461293117 5.280000e-34 156.0
21 TraesCS7D01G517200 chr5B 77.778 135 27 2 1598 1732 461292619 461292750 3.270000e-11 80.5
22 TraesCS7D01G517200 chr1B 80.057 351 55 6 3576 3926 677256329 677255994 3.040000e-61 246.0
23 TraesCS7D01G517200 chr1B 84.962 133 14 6 1164 1293 372170901 372171030 3.200000e-26 130.0
24 TraesCS7D01G517200 chr1B 88.889 45 5 0 2619 2663 675475937 675475981 5.500000e-04 56.5
25 TraesCS7D01G517200 chr5D 74.047 682 130 30 1406 2053 520910007 520910675 6.590000e-58 235.0
26 TraesCS7D01G517200 chr5D 81.022 137 20 6 1160 1294 485785258 485785126 1.940000e-18 104.0
27 TraesCS7D01G517200 chr5D 80.292 137 21 6 1160 1294 324204750 324204618 9.020000e-17 99.0
28 TraesCS7D01G517200 chr5D 77.037 135 28 2 1598 1732 384471507 384471638 1.520000e-09 75.0
29 TraesCS7D01G517200 chr1D 82.400 250 37 6 3679 3926 408627504 408627260 1.110000e-50 211.0
30 TraesCS7D01G517200 chr1D 80.292 137 21 6 1160 1294 146527422 146527290 9.020000e-17 99.0
31 TraesCS7D01G517200 chr5A 82.684 231 34 6 1825 2053 649441924 649442150 2.400000e-47 200.0
32 TraesCS7D01G517200 chr5A 77.778 135 27 2 1598 1732 485375812 485375943 3.270000e-11 80.5
33 TraesCS7D01G517200 chr2D 81.884 138 17 8 1160 1294 329951252 329951384 4.170000e-20 110.0
34 TraesCS7D01G517200 chr2D 80.292 137 21 6 1160 1294 95954898 95955030 9.020000e-17 99.0
35 TraesCS7D01G517200 chr2D 82.222 90 14 1 2394 2481 564092195 564092106 4.230000e-10 76.8
36 TraesCS7D01G517200 chr3D 81.752 137 18 7 1160 1294 87777267 87777398 1.500000e-19 108.0
37 TraesCS7D01G517200 chr3D 80.292 137 21 6 1160 1294 143584259 143584127 9.020000e-17 99.0
38 TraesCS7D01G517200 chr3D 80.292 137 21 6 1160 1294 376761306 376761174 9.020000e-17 99.0
39 TraesCS7D01G517200 chr3D 82.979 94 14 1 2387 2478 355905408 355905501 2.520000e-12 84.2
40 TraesCS7D01G517200 chr3D 84.706 85 11 1 2396 2478 406162589 406162505 2.520000e-12 84.2
41 TraesCS7D01G517200 chr2B 82.796 93 13 2 2393 2482 726693253 726693345 3.270000e-11 80.5
42 TraesCS7D01G517200 chr2B 81.522 92 14 2 2394 2482 175754367 175754276 5.470000e-09 73.1
43 TraesCS7D01G517200 chr4A 83.529 85 12 1 2396 2478 454816343 454816427 1.170000e-10 78.7
44 TraesCS7D01G517200 chr4A 96.970 33 1 0 2631 2663 366476610 366476578 5.500000e-04 56.5
45 TraesCS7D01G517200 chr4B 82.022 89 14 1 2396 2482 605276001 605275913 1.520000e-09 75.0
46 TraesCS7D01G517200 chr2A 82.558 86 13 1 2396 2479 57166869 57166954 1.520000e-09 75.0
47 TraesCS7D01G517200 chr3B 100.000 31 0 0 2631 2661 414477771 414477801 1.530000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G517200 chr7D 616221260 616225202 3942 True 7282.0 7282 100.0000 1 3943 1 chr7D.!!$R1 3942
1 TraesCS7D01G517200 chr7D 616251970 616256242 4272 False 619.6 1125 87.9644 731 3937 5 chr7D.!!$F1 3206
2 TraesCS7D01G517200 chr7A 709261348 709264361 3013 False 724.6 1548 90.1824 884 3943 5 chr7A.!!$F2 3059
3 TraesCS7D01G517200 chr7B 709510530 709511493 963 False 629.5 1140 90.7115 987 2130 2 chr7B.!!$F3 1143
4 TraesCS7D01G517200 chr5B 511852468 511853164 696 False 274.0 274 74.5070 1392 2077 1 chr5B.!!$F1 685
5 TraesCS7D01G517200 chr5D 520910007 520910675 668 False 235.0 235 74.0470 1406 2053 1 chr5D.!!$F2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 612 0.178967 TGGGCCATTTCACTGCAAGA 60.179 50.0 0.0 0.00 37.43 3.02 F
1255 1287 0.036294 GCCTCACACTACCAAGGTCC 60.036 60.0 0.0 0.00 0.00 4.46 F
2351 3595 0.039618 GCCCCAACTCTCCATGGAAA 59.960 55.0 17.0 0.43 39.12 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1514 1.699054 CCGGGGAGAGCATGAATCCA 61.699 60.000 11.87 0.0 34.62 3.41 R
2684 3979 1.139654 TGCTGCTCGAATAGATTGCCT 59.860 47.619 0.00 0.0 0.00 4.75 R
3780 5287 0.250640 CAAGGCTCACAGAAGCACCT 60.251 55.000 0.00 0.0 44.35 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
395 396 5.629079 GAAGTACACTTCTTTGAATGGGG 57.371 43.478 13.64 0.00 46.59 4.96
396 397 4.993705 AGTACACTTCTTTGAATGGGGA 57.006 40.909 0.00 0.00 0.00 4.81
397 398 4.911390 AGTACACTTCTTTGAATGGGGAG 58.089 43.478 0.00 0.00 0.00 4.30
398 399 4.597507 AGTACACTTCTTTGAATGGGGAGA 59.402 41.667 0.00 0.00 0.00 3.71
399 400 4.453480 ACACTTCTTTGAATGGGGAGAA 57.547 40.909 0.00 0.00 0.00 2.87
400 401 4.803452 ACACTTCTTTGAATGGGGAGAAA 58.197 39.130 0.00 0.00 0.00 2.52
401 402 5.397360 ACACTTCTTTGAATGGGGAGAAAT 58.603 37.500 0.00 0.00 0.00 2.17
402 403 6.552008 ACACTTCTTTGAATGGGGAGAAATA 58.448 36.000 0.00 0.00 0.00 1.40
403 404 7.184862 ACACTTCTTTGAATGGGGAGAAATAT 58.815 34.615 0.00 0.00 0.00 1.28
404 405 7.675619 ACACTTCTTTGAATGGGGAGAAATATT 59.324 33.333 0.00 0.00 0.00 1.28
405 406 9.189156 CACTTCTTTGAATGGGGAGAAATATTA 57.811 33.333 0.00 0.00 0.00 0.98
406 407 9.942526 ACTTCTTTGAATGGGGAGAAATATTAT 57.057 29.630 0.00 0.00 0.00 1.28
416 417 9.783081 ATGGGGAGAAATATTATTTTGAATTGC 57.217 29.630 3.27 0.00 0.00 3.56
417 418 8.766476 TGGGGAGAAATATTATTTTGAATTGCA 58.234 29.630 3.27 0.00 0.00 4.08
418 419 9.045223 GGGGAGAAATATTATTTTGAATTGCAC 57.955 33.333 3.27 0.00 0.00 4.57
419 420 9.598517 GGGAGAAATATTATTTTGAATTGCACA 57.401 29.630 3.27 0.00 0.00 4.57
436 437 4.114058 GCACAAGCAATGGTGATATTGT 57.886 40.909 0.00 0.00 39.62 2.71
437 438 5.247507 GCACAAGCAATGGTGATATTGTA 57.752 39.130 0.00 0.00 39.62 2.41
438 439 5.835257 GCACAAGCAATGGTGATATTGTAT 58.165 37.500 0.00 0.00 39.62 2.29
439 440 6.969366 GCACAAGCAATGGTGATATTGTATA 58.031 36.000 0.00 0.00 39.62 1.47
440 441 7.424803 GCACAAGCAATGGTGATATTGTATAA 58.575 34.615 0.00 0.00 39.62 0.98
441 442 7.920151 GCACAAGCAATGGTGATATTGTATAAA 59.080 33.333 0.00 0.00 39.62 1.40
442 443 9.236691 CACAAGCAATGGTGATATTGTATAAAC 57.763 33.333 0.00 0.00 39.62 2.01
443 444 8.965819 ACAAGCAATGGTGATATTGTATAAACA 58.034 29.630 0.00 0.00 39.62 2.83
444 445 9.970395 CAAGCAATGGTGATATTGTATAAACAT 57.030 29.630 0.00 0.00 39.62 2.71
480 481 8.350238 TGTCACATACATTGTTTTCAAATGTG 57.650 30.769 16.64 16.64 46.67 3.21
484 485 8.939201 ACATACATTGTTTTCAAATGTGAACA 57.061 26.923 11.10 0.00 43.52 3.18
485 486 9.545105 ACATACATTGTTTTCAAATGTGAACAT 57.455 25.926 11.10 0.00 43.52 2.71
510 511 5.582689 TTTTACGCTAGGACCTAGGTAAC 57.417 43.478 26.27 11.31 33.69 2.50
511 512 2.814805 ACGCTAGGACCTAGGTAACA 57.185 50.000 26.58 1.24 34.88 2.41
512 513 3.309600 ACGCTAGGACCTAGGTAACAT 57.690 47.619 26.58 3.40 34.88 2.71
513 514 3.639952 ACGCTAGGACCTAGGTAACATT 58.360 45.455 26.58 1.40 34.88 2.71
514 515 3.383825 ACGCTAGGACCTAGGTAACATTG 59.616 47.826 26.58 6.74 34.88 2.82
515 516 3.729966 GCTAGGACCTAGGTAACATTGC 58.270 50.000 26.58 10.06 34.88 3.56
516 517 3.134081 GCTAGGACCTAGGTAACATTGCA 59.866 47.826 26.58 0.00 34.88 4.08
517 518 4.202367 GCTAGGACCTAGGTAACATTGCAT 60.202 45.833 26.58 0.12 34.88 3.96
518 519 4.862641 AGGACCTAGGTAACATTGCATT 57.137 40.909 16.29 0.00 41.41 3.56
519 520 4.781934 AGGACCTAGGTAACATTGCATTC 58.218 43.478 16.29 0.00 41.41 2.67
520 521 3.883489 GGACCTAGGTAACATTGCATTCC 59.117 47.826 16.29 3.03 41.41 3.01
521 522 4.523083 GACCTAGGTAACATTGCATTCCA 58.477 43.478 16.29 0.00 41.41 3.53
522 523 4.270008 ACCTAGGTAACATTGCATTCCAC 58.730 43.478 14.41 0.00 41.41 4.02
523 524 4.018415 ACCTAGGTAACATTGCATTCCACT 60.018 41.667 14.41 0.00 41.41 4.00
524 525 5.190925 ACCTAGGTAACATTGCATTCCACTA 59.809 40.000 14.41 0.00 41.41 2.74
525 526 5.760253 CCTAGGTAACATTGCATTCCACTAG 59.240 44.000 0.00 0.00 41.41 2.57
526 527 5.179452 AGGTAACATTGCATTCCACTAGT 57.821 39.130 0.00 0.00 41.41 2.57
527 528 5.570320 AGGTAACATTGCATTCCACTAGTT 58.430 37.500 0.00 0.00 41.41 2.24
528 529 5.648092 AGGTAACATTGCATTCCACTAGTTC 59.352 40.000 0.00 0.00 41.41 3.01
529 530 4.685169 AACATTGCATTCCACTAGTTCG 57.315 40.909 0.00 0.00 0.00 3.95
530 531 3.937814 ACATTGCATTCCACTAGTTCGA 58.062 40.909 0.00 0.00 0.00 3.71
531 532 3.935203 ACATTGCATTCCACTAGTTCGAG 59.065 43.478 0.00 0.00 0.00 4.04
532 533 2.672961 TGCATTCCACTAGTTCGAGG 57.327 50.000 0.00 0.00 0.00 4.63
533 534 2.176045 TGCATTCCACTAGTTCGAGGA 58.824 47.619 0.00 0.00 0.00 3.71
534 535 2.094182 TGCATTCCACTAGTTCGAGGAC 60.094 50.000 0.00 0.00 0.00 3.85
535 536 2.738964 GCATTCCACTAGTTCGAGGACC 60.739 54.545 0.00 0.00 0.00 4.46
536 537 2.297698 TTCCACTAGTTCGAGGACCA 57.702 50.000 0.00 0.00 0.00 4.02
537 538 2.526888 TCCACTAGTTCGAGGACCAT 57.473 50.000 0.00 0.00 0.00 3.55
538 539 2.376109 TCCACTAGTTCGAGGACCATC 58.624 52.381 0.00 0.00 0.00 3.51
539 540 1.065701 CCACTAGTTCGAGGACCATCG 59.934 57.143 0.00 6.93 44.07 3.84
540 541 1.743958 CACTAGTTCGAGGACCATCGT 59.256 52.381 11.47 0.00 43.20 3.73
541 542 1.743958 ACTAGTTCGAGGACCATCGTG 59.256 52.381 11.47 3.92 43.20 4.35
542 543 2.014857 CTAGTTCGAGGACCATCGTGA 58.985 52.381 11.47 2.40 43.20 4.35
543 544 0.811915 AGTTCGAGGACCATCGTGAG 59.188 55.000 11.47 0.00 43.20 3.51
556 557 1.162698 TCGTGAGAGTACAAGGACCG 58.837 55.000 0.00 0.00 34.84 4.79
557 558 0.879765 CGTGAGAGTACAAGGACCGT 59.120 55.000 0.00 0.00 0.00 4.83
558 559 1.401148 CGTGAGAGTACAAGGACCGTG 60.401 57.143 5.81 5.81 0.00 4.94
559 560 1.884579 GTGAGAGTACAAGGACCGTGA 59.115 52.381 14.83 0.00 0.00 4.35
560 561 1.884579 TGAGAGTACAAGGACCGTGAC 59.115 52.381 14.83 7.95 0.00 3.67
561 562 2.161030 GAGAGTACAAGGACCGTGACT 58.839 52.381 14.83 12.30 0.00 3.41
562 563 3.244665 TGAGAGTACAAGGACCGTGACTA 60.245 47.826 14.83 0.00 0.00 2.59
563 564 3.946558 GAGAGTACAAGGACCGTGACTAT 59.053 47.826 14.83 10.00 0.00 2.12
564 565 5.108187 AGAGTACAAGGACCGTGACTATA 57.892 43.478 14.83 0.00 0.00 1.31
565 566 5.503927 AGAGTACAAGGACCGTGACTATAA 58.496 41.667 14.83 0.00 0.00 0.98
566 567 6.127793 AGAGTACAAGGACCGTGACTATAAT 58.872 40.000 14.83 0.00 0.00 1.28
567 568 6.606395 AGAGTACAAGGACCGTGACTATAATT 59.394 38.462 14.83 0.00 0.00 1.40
568 569 7.776969 AGAGTACAAGGACCGTGACTATAATTA 59.223 37.037 14.83 0.00 0.00 1.40
569 570 8.474710 AGTACAAGGACCGTGACTATAATTAT 57.525 34.615 14.83 2.97 0.00 1.28
570 571 8.574737 AGTACAAGGACCGTGACTATAATTATC 58.425 37.037 14.83 0.00 0.00 1.75
571 572 7.598759 ACAAGGACCGTGACTATAATTATCT 57.401 36.000 14.83 0.00 0.00 1.98
572 573 7.659186 ACAAGGACCGTGACTATAATTATCTC 58.341 38.462 14.83 0.00 0.00 2.75
573 574 7.506261 ACAAGGACCGTGACTATAATTATCTCT 59.494 37.037 14.83 0.00 0.00 3.10
574 575 7.455641 AGGACCGTGACTATAATTATCTCTG 57.544 40.000 0.00 0.00 0.00 3.35
575 576 6.071840 AGGACCGTGACTATAATTATCTCTGC 60.072 42.308 0.00 0.00 0.00 4.26
576 577 6.026947 ACCGTGACTATAATTATCTCTGCC 57.973 41.667 0.00 0.00 0.00 4.85
577 578 5.047235 ACCGTGACTATAATTATCTCTGCCC 60.047 44.000 0.00 0.00 0.00 5.36
578 579 5.411781 CGTGACTATAATTATCTCTGCCCC 58.588 45.833 0.00 0.00 0.00 5.80
579 580 5.624738 CGTGACTATAATTATCTCTGCCCCC 60.625 48.000 0.00 0.00 0.00 5.40
595 596 0.975887 CCCCCTGATTGTTGTTTGGG 59.024 55.000 0.00 0.00 34.68 4.12
596 597 0.321346 CCCCTGATTGTTGTTTGGGC 59.679 55.000 0.00 0.00 33.63 5.36
597 598 0.321346 CCCTGATTGTTGTTTGGGCC 59.679 55.000 0.00 0.00 0.00 5.80
598 599 1.047002 CCTGATTGTTGTTTGGGCCA 58.953 50.000 0.00 0.00 0.00 5.36
599 600 1.624813 CCTGATTGTTGTTTGGGCCAT 59.375 47.619 7.26 0.00 0.00 4.40
600 601 2.038820 CCTGATTGTTGTTTGGGCCATT 59.961 45.455 7.26 0.00 0.00 3.16
601 602 3.496515 CCTGATTGTTGTTTGGGCCATTT 60.497 43.478 7.26 0.00 0.00 2.32
602 603 3.737850 TGATTGTTGTTTGGGCCATTTC 58.262 40.909 7.26 1.19 0.00 2.17
603 604 3.135348 TGATTGTTGTTTGGGCCATTTCA 59.865 39.130 7.26 4.23 0.00 2.69
604 605 2.611225 TGTTGTTTGGGCCATTTCAC 57.389 45.000 7.26 3.06 0.00 3.18
605 606 2.114616 TGTTGTTTGGGCCATTTCACT 58.885 42.857 7.26 0.00 0.00 3.41
606 607 2.158986 TGTTGTTTGGGCCATTTCACTG 60.159 45.455 7.26 0.00 0.00 3.66
607 608 0.392336 TGTTTGGGCCATTTCACTGC 59.608 50.000 7.26 0.00 0.00 4.40
608 609 0.392336 GTTTGGGCCATTTCACTGCA 59.608 50.000 7.26 0.00 0.00 4.41
609 610 1.126488 TTTGGGCCATTTCACTGCAA 58.874 45.000 7.26 0.00 0.00 4.08
610 611 0.680618 TTGGGCCATTTCACTGCAAG 59.319 50.000 7.26 0.00 42.29 4.01
611 612 0.178967 TGGGCCATTTCACTGCAAGA 60.179 50.000 0.00 0.00 37.43 3.02
612 613 0.968405 GGGCCATTTCACTGCAAGAA 59.032 50.000 4.39 0.00 37.43 2.52
613 614 1.344114 GGGCCATTTCACTGCAAGAAA 59.656 47.619 4.39 14.21 39.11 2.52
614 615 2.407090 GGCCATTTCACTGCAAGAAAC 58.593 47.619 14.16 4.65 37.76 2.78
615 616 2.224018 GGCCATTTCACTGCAAGAAACA 60.224 45.455 14.16 0.00 37.76 2.83
616 617 3.456280 GCCATTTCACTGCAAGAAACAA 58.544 40.909 14.16 0.00 37.76 2.83
617 618 3.870419 GCCATTTCACTGCAAGAAACAAA 59.130 39.130 14.16 0.00 37.76 2.83
618 619 4.332268 GCCATTTCACTGCAAGAAACAAAA 59.668 37.500 14.16 0.00 37.76 2.44
619 620 5.007921 GCCATTTCACTGCAAGAAACAAAAT 59.992 36.000 14.16 0.00 37.76 1.82
620 621 6.458615 GCCATTTCACTGCAAGAAACAAAATT 60.459 34.615 14.16 0.00 37.76 1.82
621 622 7.127686 CCATTTCACTGCAAGAAACAAAATTC 58.872 34.615 14.16 0.00 37.76 2.17
622 623 7.011669 CCATTTCACTGCAAGAAACAAAATTCT 59.988 33.333 14.16 0.00 41.34 2.40
624 625 8.994429 TTTCACTGCAAGAAACAAAATTCTTA 57.006 26.923 9.28 0.00 45.45 2.10
625 626 8.633075 TTCACTGCAAGAAACAAAATTCTTAG 57.367 30.769 2.29 1.22 45.45 2.18
626 627 7.771183 TCACTGCAAGAAACAAAATTCTTAGT 58.229 30.769 2.29 1.76 45.45 2.24
627 628 8.250332 TCACTGCAAGAAACAAAATTCTTAGTT 58.750 29.630 2.29 0.00 45.45 2.24
628 629 8.323140 CACTGCAAGAAACAAAATTCTTAGTTG 58.677 33.333 2.29 0.00 45.45 3.16
629 630 8.250332 ACTGCAAGAAACAAAATTCTTAGTTGA 58.750 29.630 2.29 0.00 45.45 3.18
630 631 9.252962 CTGCAAGAAACAAAATTCTTAGTTGAT 57.747 29.630 2.29 0.00 45.45 2.57
631 632 9.248291 TGCAAGAAACAAAATTCTTAGTTGATC 57.752 29.630 2.29 0.00 45.45 2.92
632 633 8.703336 GCAAGAAACAAAATTCTTAGTTGATCC 58.297 33.333 2.29 0.00 45.45 3.36
633 634 9.748708 CAAGAAACAAAATTCTTAGTTGATCCA 57.251 29.630 2.29 0.00 45.45 3.41
645 646 8.737168 TCTTAGTTGATCCAATCATAGTTTGG 57.263 34.615 0.00 1.34 44.14 3.28
646 647 7.775093 TCTTAGTTGATCCAATCATAGTTTGGG 59.225 37.037 6.93 0.00 43.19 4.12
647 648 6.078456 AGTTGATCCAATCATAGTTTGGGA 57.922 37.500 6.93 0.00 43.19 4.37
648 649 6.676558 AGTTGATCCAATCATAGTTTGGGAT 58.323 36.000 6.93 0.00 43.19 3.85
649 650 7.128077 AGTTGATCCAATCATAGTTTGGGATT 58.872 34.615 6.93 0.00 43.19 3.01
650 651 6.964807 TGATCCAATCATAGTTTGGGATTG 57.035 37.500 0.00 0.00 44.61 2.67
651 652 6.671605 TGATCCAATCATAGTTTGGGATTGA 58.328 36.000 13.49 2.90 46.75 2.57
652 653 7.124721 TGATCCAATCATAGTTTGGGATTGAA 58.875 34.615 13.49 0.00 46.75 2.69
653 654 7.618907 TGATCCAATCATAGTTTGGGATTGAAA 59.381 33.333 13.49 3.97 46.75 2.69
654 655 7.789202 TCCAATCATAGTTTGGGATTGAAAA 57.211 32.000 13.49 0.00 46.75 2.29
655 656 8.200024 TCCAATCATAGTTTGGGATTGAAAAA 57.800 30.769 13.49 0.00 46.75 1.94
680 681 9.890629 AAACATACTCTGCTTAAATATGAGTCA 57.109 29.630 0.00 0.00 38.67 3.41
681 682 9.890629 AACATACTCTGCTTAAATATGAGTCAA 57.109 29.630 0.00 0.00 38.67 3.18
682 683 9.319143 ACATACTCTGCTTAAATATGAGTCAAC 57.681 33.333 0.00 0.00 38.67 3.18
683 684 9.539825 CATACTCTGCTTAAATATGAGTCAACT 57.460 33.333 0.00 0.00 38.67 3.16
684 685 9.757227 ATACTCTGCTTAAATATGAGTCAACTC 57.243 33.333 0.00 3.13 43.15 3.01
692 693 2.432628 GAGTCAACTCACCGGCCG 60.433 66.667 21.04 21.04 42.42 6.13
693 694 2.915659 AGTCAACTCACCGGCCGA 60.916 61.111 30.73 5.58 0.00 5.54
694 695 2.432628 GTCAACTCACCGGCCGAG 60.433 66.667 30.73 19.47 36.53 4.63
695 696 3.691342 TCAACTCACCGGCCGAGG 61.691 66.667 30.73 18.66 34.66 4.63
699 700 4.697756 CTCACCGGCCGAGGCAAA 62.698 66.667 30.73 4.50 44.11 3.68
700 701 4.257654 TCACCGGCCGAGGCAAAA 62.258 61.111 30.73 0.96 44.11 2.44
701 702 3.737172 CACCGGCCGAGGCAAAAG 61.737 66.667 30.73 9.82 44.11 2.27
702 703 3.948719 ACCGGCCGAGGCAAAAGA 61.949 61.111 30.73 0.00 44.11 2.52
703 704 2.438434 CCGGCCGAGGCAAAAGAT 60.438 61.111 30.73 0.00 44.11 2.40
704 705 1.153249 CCGGCCGAGGCAAAAGATA 60.153 57.895 30.73 0.00 44.11 1.98
705 706 1.160329 CCGGCCGAGGCAAAAGATAG 61.160 60.000 30.73 0.00 44.11 2.08
706 707 0.179084 CGGCCGAGGCAAAAGATAGA 60.179 55.000 24.07 0.00 44.11 1.98
707 708 1.587547 GGCCGAGGCAAAAGATAGAG 58.412 55.000 16.65 0.00 44.11 2.43
708 709 1.139058 GGCCGAGGCAAAAGATAGAGA 59.861 52.381 16.65 0.00 44.11 3.10
709 710 2.478831 GCCGAGGCAAAAGATAGAGAG 58.521 52.381 9.58 0.00 41.49 3.20
710 711 2.804933 GCCGAGGCAAAAGATAGAGAGG 60.805 54.545 9.58 0.00 41.49 3.69
711 712 2.695666 CCGAGGCAAAAGATAGAGAGGA 59.304 50.000 0.00 0.00 0.00 3.71
712 713 3.491792 CCGAGGCAAAAGATAGAGAGGAC 60.492 52.174 0.00 0.00 0.00 3.85
713 714 3.383185 CGAGGCAAAAGATAGAGAGGACT 59.617 47.826 0.00 0.00 0.00 3.85
714 715 4.142049 CGAGGCAAAAGATAGAGAGGACTT 60.142 45.833 0.00 0.00 0.00 3.01
715 716 5.067936 CGAGGCAAAAGATAGAGAGGACTTA 59.932 44.000 0.00 0.00 0.00 2.24
716 717 6.405953 CGAGGCAAAAGATAGAGAGGACTTAA 60.406 42.308 0.00 0.00 0.00 1.85
717 718 7.444703 AGGCAAAAGATAGAGAGGACTTAAT 57.555 36.000 0.00 0.00 0.00 1.40
718 719 7.505258 AGGCAAAAGATAGAGAGGACTTAATC 58.495 38.462 0.00 0.00 0.00 1.75
719 720 7.346960 AGGCAAAAGATAGAGAGGACTTAATCT 59.653 37.037 0.00 0.00 32.85 2.40
720 721 8.643324 GGCAAAAGATAGAGAGGACTTAATCTA 58.357 37.037 0.00 0.00 31.94 1.98
724 725 9.629878 AAAGATAGAGAGGACTTAATCTAACGA 57.370 33.333 0.00 0.00 31.94 3.85
725 726 9.629878 AAGATAGAGAGGACTTAATCTAACGAA 57.370 33.333 0.00 0.00 31.94 3.85
726 727 9.280174 AGATAGAGAGGACTTAATCTAACGAAG 57.720 37.037 0.00 0.00 31.09 3.79
727 728 9.275398 GATAGAGAGGACTTAATCTAACGAAGA 57.725 37.037 0.00 0.00 39.02 2.87
728 729 7.941431 AGAGAGGACTTAATCTAACGAAGAA 57.059 36.000 0.00 0.00 37.89 2.52
729 730 8.528044 AGAGAGGACTTAATCTAACGAAGAAT 57.472 34.615 0.00 0.00 37.89 2.40
730 731 8.410141 AGAGAGGACTTAATCTAACGAAGAATG 58.590 37.037 0.00 0.00 37.89 2.67
731 732 7.493367 AGAGGACTTAATCTAACGAAGAATGG 58.507 38.462 0.00 0.00 37.89 3.16
732 733 6.049790 AGGACTTAATCTAACGAAGAATGGC 58.950 40.000 0.00 0.00 37.89 4.40
733 734 6.049790 GGACTTAATCTAACGAAGAATGGCT 58.950 40.000 0.00 0.00 37.89 4.75
734 735 6.201234 GGACTTAATCTAACGAAGAATGGCTC 59.799 42.308 0.00 0.00 37.89 4.70
735 736 6.640518 ACTTAATCTAACGAAGAATGGCTCA 58.359 36.000 0.00 0.00 37.89 4.26
736 737 6.535508 ACTTAATCTAACGAAGAATGGCTCAC 59.464 38.462 0.00 0.00 37.89 3.51
737 738 3.247006 TCTAACGAAGAATGGCTCACC 57.753 47.619 0.00 0.00 0.00 4.02
738 739 2.832129 TCTAACGAAGAATGGCTCACCT 59.168 45.455 0.00 0.00 36.63 4.00
748 749 2.584835 TGGCTCACCTACTTGCAATT 57.415 45.000 0.00 0.00 36.63 2.32
750 751 3.230134 TGGCTCACCTACTTGCAATTTT 58.770 40.909 0.00 0.00 36.63 1.82
790 791 9.640963 ATGTCGCATCTCTTAATAGTTTATACC 57.359 33.333 0.00 0.00 0.00 2.73
794 795 8.851416 CGCATCTCTTAATAGTTTATACCGAAG 58.149 37.037 0.00 0.00 0.00 3.79
827 828 5.178797 GGAGATCGAATGAACCTTTCTTGA 58.821 41.667 0.00 0.00 0.00 3.02
881 882 1.577736 AGCTCCTGACAGCAATAGGT 58.422 50.000 0.00 0.00 42.40 3.08
890 891 5.102953 TGACAGCAATAGGTCAGCTAATT 57.897 39.130 0.00 0.00 39.00 1.40
893 894 6.098266 TGACAGCAATAGGTCAGCTAATTAGA 59.902 38.462 16.85 0.00 39.00 2.10
894 895 7.072263 ACAGCAATAGGTCAGCTAATTAGAT 57.928 36.000 16.85 7.09 36.73 1.98
954 984 7.490962 TGTTAATTTTTGTGTCATCGTCTCT 57.509 32.000 0.00 0.00 0.00 3.10
969 999 5.713792 TCGTCTCTCTCAAGTTTTGATCT 57.286 39.130 0.00 0.00 39.30 2.75
1006 1036 3.866582 CCTCCGGCTCCATGGGAC 61.867 72.222 13.02 3.72 0.00 4.46
1009 1039 3.550431 CCGGCTCCATGGGACGAT 61.550 66.667 24.84 0.00 0.00 3.73
1103 1135 8.902540 ATCACTCTTTATCTGTGTTTTGTACA 57.097 30.769 0.00 0.00 33.82 2.90
1104 1136 8.725405 TCACTCTTTATCTGTGTTTTGTACAA 57.275 30.769 3.59 3.59 38.80 2.41
1128 1160 8.922676 CAACACTGATAATAAGTTCGTTAGTGT 58.077 33.333 0.00 0.00 45.55 3.55
1129 1161 8.684973 ACACTGATAATAAGTTCGTTAGTGTC 57.315 34.615 0.00 0.00 41.44 3.67
1130 1162 7.484007 ACACTGATAATAAGTTCGTTAGTGTCG 59.516 37.037 0.00 0.00 41.44 4.35
1131 1163 7.484007 CACTGATAATAAGTTCGTTAGTGTCGT 59.516 37.037 0.00 0.00 31.50 4.34
1132 1164 8.025445 ACTGATAATAAGTTCGTTAGTGTCGTT 58.975 33.333 0.00 0.00 31.50 3.85
1133 1165 8.746922 TGATAATAAGTTCGTTAGTGTCGTTT 57.253 30.769 0.00 0.00 31.50 3.60
1139 1171 6.413018 AGTTCGTTAGTGTCGTTTTTCTTT 57.587 33.333 0.00 0.00 0.00 2.52
1140 1172 6.472680 AGTTCGTTAGTGTCGTTTTTCTTTC 58.527 36.000 0.00 0.00 0.00 2.62
1142 1174 7.489113 AGTTCGTTAGTGTCGTTTTTCTTTCTA 59.511 33.333 0.00 0.00 0.00 2.10
1150 1182 9.072294 AGTGTCGTTTTTCTTTCTATTTTTGTG 57.928 29.630 0.00 0.00 0.00 3.33
1202 1234 5.745312 GGTTTTCCCCTTCTGATTTTCAT 57.255 39.130 0.00 0.00 0.00 2.57
1203 1235 6.114187 GGTTTTCCCCTTCTGATTTTCATT 57.886 37.500 0.00 0.00 0.00 2.57
1204 1236 7.239763 GGTTTTCCCCTTCTGATTTTCATTA 57.760 36.000 0.00 0.00 0.00 1.90
1205 1237 7.097192 GGTTTTCCCCTTCTGATTTTCATTAC 58.903 38.462 0.00 0.00 0.00 1.89
1206 1238 7.039011 GGTTTTCCCCTTCTGATTTTCATTACT 60.039 37.037 0.00 0.00 0.00 2.24
1207 1239 7.466746 TTTCCCCTTCTGATTTTCATTACTG 57.533 36.000 0.00 0.00 0.00 2.74
1208 1240 6.387192 TCCCCTTCTGATTTTCATTACTGA 57.613 37.500 0.00 0.00 0.00 3.41
1209 1241 6.789268 TCCCCTTCTGATTTTCATTACTGAA 58.211 36.000 0.00 0.00 39.62 3.02
1210 1242 7.237982 TCCCCTTCTGATTTTCATTACTGAAA 58.762 34.615 4.26 4.26 46.92 2.69
1220 1252 5.843673 TTCATTACTGAAAACCAACTGCA 57.156 34.783 0.00 0.00 38.43 4.41
1221 1253 5.843673 TCATTACTGAAAACCAACTGCAA 57.156 34.783 0.00 0.00 0.00 4.08
1222 1254 6.214191 TCATTACTGAAAACCAACTGCAAA 57.786 33.333 0.00 0.00 0.00 3.68
1223 1255 6.039616 TCATTACTGAAAACCAACTGCAAAC 58.960 36.000 0.00 0.00 0.00 2.93
1224 1256 3.245518 ACTGAAAACCAACTGCAAACC 57.754 42.857 0.00 0.00 0.00 3.27
1225 1257 2.564947 ACTGAAAACCAACTGCAAACCA 59.435 40.909 0.00 0.00 0.00 3.67
1226 1258 3.007398 ACTGAAAACCAACTGCAAACCAA 59.993 39.130 0.00 0.00 0.00 3.67
1227 1259 3.999663 CTGAAAACCAACTGCAAACCAAA 59.000 39.130 0.00 0.00 0.00 3.28
1228 1260 4.389374 TGAAAACCAACTGCAAACCAAAA 58.611 34.783 0.00 0.00 0.00 2.44
1229 1261 4.453819 TGAAAACCAACTGCAAACCAAAAG 59.546 37.500 0.00 0.00 0.00 2.27
1230 1262 3.694043 AACCAACTGCAAACCAAAAGT 57.306 38.095 0.00 0.00 0.00 2.66
1231 1263 4.810191 AACCAACTGCAAACCAAAAGTA 57.190 36.364 0.00 0.00 0.00 2.24
1232 1264 5.351948 AACCAACTGCAAACCAAAAGTAT 57.648 34.783 0.00 0.00 0.00 2.12
1233 1265 5.351948 ACCAACTGCAAACCAAAAGTATT 57.648 34.783 0.00 0.00 0.00 1.89
1234 1266 5.356426 ACCAACTGCAAACCAAAAGTATTC 58.644 37.500 0.00 0.00 0.00 1.75
1235 1267 5.105146 ACCAACTGCAAACCAAAAGTATTCA 60.105 36.000 0.00 0.00 0.00 2.57
1236 1268 5.463061 CCAACTGCAAACCAAAAGTATTCAG 59.537 40.000 0.00 0.00 0.00 3.02
1237 1269 4.620982 ACTGCAAACCAAAAGTATTCAGC 58.379 39.130 0.00 0.00 0.00 4.26
1238 1270 3.988819 TGCAAACCAAAAGTATTCAGCC 58.011 40.909 0.00 0.00 0.00 4.85
1239 1271 3.640967 TGCAAACCAAAAGTATTCAGCCT 59.359 39.130 0.00 0.00 0.00 4.58
1240 1272 4.237724 GCAAACCAAAAGTATTCAGCCTC 58.762 43.478 0.00 0.00 0.00 4.70
1241 1273 4.261994 GCAAACCAAAAGTATTCAGCCTCA 60.262 41.667 0.00 0.00 0.00 3.86
1242 1274 5.222631 CAAACCAAAAGTATTCAGCCTCAC 58.777 41.667 0.00 0.00 0.00 3.51
1243 1275 4.098914 ACCAAAAGTATTCAGCCTCACA 57.901 40.909 0.00 0.00 0.00 3.58
1244 1276 3.821033 ACCAAAAGTATTCAGCCTCACAC 59.179 43.478 0.00 0.00 0.00 3.82
1245 1277 4.074970 CCAAAAGTATTCAGCCTCACACT 58.925 43.478 0.00 0.00 0.00 3.55
1246 1278 5.221843 ACCAAAAGTATTCAGCCTCACACTA 60.222 40.000 0.00 0.00 0.00 2.74
1247 1279 5.122396 CCAAAAGTATTCAGCCTCACACTAC 59.878 44.000 0.00 0.00 0.00 2.73
1248 1280 4.473477 AAGTATTCAGCCTCACACTACC 57.527 45.455 0.00 0.00 0.00 3.18
1249 1281 3.441101 AGTATTCAGCCTCACACTACCA 58.559 45.455 0.00 0.00 0.00 3.25
1250 1282 3.838317 AGTATTCAGCCTCACACTACCAA 59.162 43.478 0.00 0.00 0.00 3.67
1251 1283 2.839486 TTCAGCCTCACACTACCAAG 57.161 50.000 0.00 0.00 0.00 3.61
1252 1284 0.976641 TCAGCCTCACACTACCAAGG 59.023 55.000 0.00 0.00 0.00 3.61
1253 1285 0.687354 CAGCCTCACACTACCAAGGT 59.313 55.000 0.00 0.00 0.00 3.50
1254 1286 0.977395 AGCCTCACACTACCAAGGTC 59.023 55.000 0.00 0.00 0.00 3.85
1255 1287 0.036294 GCCTCACACTACCAAGGTCC 60.036 60.000 0.00 0.00 0.00 4.46
1256 1288 0.613777 CCTCACACTACCAAGGTCCC 59.386 60.000 0.00 0.00 0.00 4.46
1257 1289 1.348064 CTCACACTACCAAGGTCCCA 58.652 55.000 0.00 0.00 0.00 4.37
1258 1290 1.002087 CTCACACTACCAAGGTCCCAC 59.998 57.143 0.00 0.00 0.00 4.61
1259 1291 0.320421 CACACTACCAAGGTCCCACG 60.320 60.000 0.00 0.00 0.00 4.94
1260 1292 1.375523 CACTACCAAGGTCCCACGC 60.376 63.158 0.00 0.00 0.00 5.34
1261 1293 1.839747 ACTACCAAGGTCCCACGCA 60.840 57.895 0.00 0.00 0.00 5.24
1262 1294 1.373435 CTACCAAGGTCCCACGCAA 59.627 57.895 0.00 0.00 0.00 4.85
1263 1295 0.953960 CTACCAAGGTCCCACGCAAC 60.954 60.000 0.00 0.00 0.00 4.17
1264 1296 2.718747 TACCAAGGTCCCACGCAACG 62.719 60.000 0.00 0.00 0.00 4.10
1265 1297 4.025401 CAAGGTCCCACGCAACGC 62.025 66.667 0.00 0.00 0.00 4.84
1266 1298 4.555709 AAGGTCCCACGCAACGCA 62.556 61.111 0.00 0.00 0.00 5.24
1267 1299 4.988598 AGGTCCCACGCAACGCAG 62.989 66.667 0.00 0.00 0.00 5.18
1271 1303 3.124270 CCCACGCAACGCAGCATA 61.124 61.111 0.00 0.00 0.00 3.14
1272 1304 2.685829 CCCACGCAACGCAGCATAA 61.686 57.895 0.00 0.00 0.00 1.90
1273 1305 1.208870 CCACGCAACGCAGCATAAA 59.791 52.632 0.00 0.00 0.00 1.40
1274 1306 1.065031 CCACGCAACGCAGCATAAAC 61.065 55.000 0.00 0.00 0.00 2.01
1275 1307 1.065031 CACGCAACGCAGCATAAACC 61.065 55.000 0.00 0.00 0.00 3.27
1276 1308 1.208870 CGCAACGCAGCATAAACCA 59.791 52.632 0.00 0.00 0.00 3.67
1277 1309 1.065031 CGCAACGCAGCATAAACCAC 61.065 55.000 0.00 0.00 0.00 4.16
1278 1310 0.732538 GCAACGCAGCATAAACCACC 60.733 55.000 0.00 0.00 0.00 4.61
1279 1311 0.881118 CAACGCAGCATAAACCACCT 59.119 50.000 0.00 0.00 0.00 4.00
1280 1312 2.080693 CAACGCAGCATAAACCACCTA 58.919 47.619 0.00 0.00 0.00 3.08
1281 1313 2.483014 ACGCAGCATAAACCACCTAA 57.517 45.000 0.00 0.00 0.00 2.69
1282 1314 2.785562 ACGCAGCATAAACCACCTAAA 58.214 42.857 0.00 0.00 0.00 1.85
1283 1315 2.486592 ACGCAGCATAAACCACCTAAAC 59.513 45.455 0.00 0.00 0.00 2.01
1284 1316 2.159435 CGCAGCATAAACCACCTAAACC 60.159 50.000 0.00 0.00 0.00 3.27
1285 1317 2.823154 GCAGCATAAACCACCTAAACCA 59.177 45.455 0.00 0.00 0.00 3.67
1286 1318 3.257127 GCAGCATAAACCACCTAAACCAA 59.743 43.478 0.00 0.00 0.00 3.67
1287 1319 4.262249 GCAGCATAAACCACCTAAACCAAA 60.262 41.667 0.00 0.00 0.00 3.28
1288 1320 5.740513 GCAGCATAAACCACCTAAACCAAAA 60.741 40.000 0.00 0.00 0.00 2.44
1289 1321 5.925969 CAGCATAAACCACCTAAACCAAAAG 59.074 40.000 0.00 0.00 0.00 2.27
1290 1322 4.688879 GCATAAACCACCTAAACCAAAAGC 59.311 41.667 0.00 0.00 0.00 3.51
1291 1323 3.830744 AAACCACCTAAACCAAAAGCC 57.169 42.857 0.00 0.00 0.00 4.35
1292 1324 2.463047 ACCACCTAAACCAAAAGCCA 57.537 45.000 0.00 0.00 0.00 4.75
1293 1325 2.753247 ACCACCTAAACCAAAAGCCAA 58.247 42.857 0.00 0.00 0.00 4.52
1294 1326 2.432874 ACCACCTAAACCAAAAGCCAAC 59.567 45.455 0.00 0.00 0.00 3.77
1295 1327 2.432510 CCACCTAAACCAAAAGCCAACA 59.567 45.455 0.00 0.00 0.00 3.33
1296 1328 3.070878 CCACCTAAACCAAAAGCCAACAT 59.929 43.478 0.00 0.00 0.00 2.71
1297 1329 4.057432 CACCTAAACCAAAAGCCAACATG 58.943 43.478 0.00 0.00 0.00 3.21
1298 1330 3.964031 ACCTAAACCAAAAGCCAACATGA 59.036 39.130 0.00 0.00 0.00 3.07
1299 1331 4.407296 ACCTAAACCAAAAGCCAACATGAA 59.593 37.500 0.00 0.00 0.00 2.57
1300 1332 5.104735 ACCTAAACCAAAAGCCAACATGAAA 60.105 36.000 0.00 0.00 0.00 2.69
1301 1333 5.997129 CCTAAACCAAAAGCCAACATGAAAT 59.003 36.000 0.00 0.00 0.00 2.17
1302 1334 6.486320 CCTAAACCAAAAGCCAACATGAAATT 59.514 34.615 0.00 0.00 0.00 1.82
1303 1335 6.772360 AAACCAAAAGCCAACATGAAATTT 57.228 29.167 0.00 0.00 0.00 1.82
1304 1336 6.772360 AACCAAAAGCCAACATGAAATTTT 57.228 29.167 0.00 0.00 0.00 1.82
1305 1337 6.375945 ACCAAAAGCCAACATGAAATTTTC 57.624 33.333 0.00 2.05 0.00 2.29
1306 1338 5.884792 ACCAAAAGCCAACATGAAATTTTCA 59.115 32.000 13.88 13.88 45.01 2.69
1307 1339 6.038492 ACCAAAAGCCAACATGAAATTTTCAG 59.962 34.615 16.34 11.05 43.98 3.02
1308 1340 6.038492 CCAAAAGCCAACATGAAATTTTCAGT 59.962 34.615 16.34 11.58 43.98 3.41
1309 1341 7.415429 CCAAAAGCCAACATGAAATTTTCAGTT 60.415 33.333 16.34 15.72 43.98 3.16
1310 1342 8.610896 CAAAAGCCAACATGAAATTTTCAGTTA 58.389 29.630 16.34 0.00 43.98 2.24
1311 1343 7.713764 AAGCCAACATGAAATTTTCAGTTAC 57.286 32.000 16.34 13.90 43.98 2.50
1312 1344 7.054491 AGCCAACATGAAATTTTCAGTTACT 57.946 32.000 16.34 15.29 43.98 2.24
1313 1345 7.500141 AGCCAACATGAAATTTTCAGTTACTT 58.500 30.769 16.34 0.00 43.98 2.24
1330 1362 9.239551 TCAGTTACTTCACTAAGCTTGTATCTA 57.760 33.333 9.86 0.00 36.05 1.98
1339 1371 7.933577 TCACTAAGCTTGTATCTAATCAATGGG 59.066 37.037 9.86 0.00 0.00 4.00
1358 1396 9.987726 TCAATGGGCAATATATATGGATTGTAA 57.012 29.630 0.88 0.00 35.80 2.41
1373 1411 6.976088 TGGATTGTAATGGTAATTAATGGCG 58.024 36.000 0.00 0.00 30.04 5.69
1375 1413 7.285629 TGGATTGTAATGGTAATTAATGGCGAA 59.714 33.333 0.00 0.00 30.04 4.70
1400 1438 4.329545 ACGGCCTGCCACGTTCAT 62.330 61.111 9.17 0.00 40.99 2.57
1412 1450 1.192312 CACGTTCATGGTGACGAACAG 59.808 52.381 19.06 4.46 41.28 3.16
1612 1656 4.063967 CTACCGGTGACTGCGGCA 62.064 66.667 19.93 1.29 0.00 5.69
1684 1728 2.430921 AGTTCACGCTCGCTTCCG 60.431 61.111 0.00 0.00 0.00 4.30
2080 2169 1.672030 TCGAGGTACGCTCGTTGGA 60.672 57.895 23.88 9.78 43.87 3.53
2088 2177 1.808411 ACGCTCGTTGGATCATTGTT 58.192 45.000 0.00 0.00 0.00 2.83
2142 2247 3.301642 GGCATTTCGATCGCTTCTTTTTG 59.698 43.478 11.09 0.76 0.00 2.44
2151 2259 1.477105 GCTTCTTTTTGTGGACGTGC 58.523 50.000 0.00 0.00 0.00 5.34
2169 2277 1.153842 CGCATGTGGACAGCGTAGA 60.154 57.895 12.51 0.00 45.82 2.59
2333 3577 2.934553 GTGATTGTCTAAACCTACGGGC 59.065 50.000 0.00 0.00 35.63 6.13
2351 3595 0.039618 GCCCCAACTCTCCATGGAAA 59.960 55.000 17.00 0.43 39.12 3.13
2362 3616 7.141758 ACTCTCCATGGAAAGCATCTTTATA 57.858 36.000 15.37 0.00 0.00 0.98
2413 3697 6.082707 AGGAAGTACTCCCTCAGTAAAGAAA 58.917 40.000 0.00 0.00 46.81 2.52
2423 3707 7.434492 TCCCTCAGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2425 3709 7.711339 CCCTCAGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2443 3727 9.685828 AAGAGCGTTTAAATTGTTATTTTAGCA 57.314 25.926 0.00 0.00 35.61 3.49
2492 3776 6.183360 CGAAGGGAGTAGTAACTAAACTCTCC 60.183 46.154 0.00 0.00 40.89 3.71
2566 3852 8.486210 ACAACTAAACTCTCCATGCATAATAGA 58.514 33.333 0.00 1.68 0.00 1.98
2574 3860 7.776969 ACTCTCCATGCATAATAGACATTTTGT 59.223 33.333 0.00 0.00 0.00 2.83
2656 3951 4.275196 GGGAAGTGGTTCAGTTTTACTGTC 59.725 45.833 6.71 2.57 46.03 3.51
2657 3952 4.275196 GGAAGTGGTTCAGTTTTACTGTCC 59.725 45.833 6.71 10.39 46.03 4.02
2658 3953 4.772886 AGTGGTTCAGTTTTACTGTCCT 57.227 40.909 17.20 4.35 46.03 3.85
2659 3954 5.881923 AGTGGTTCAGTTTTACTGTCCTA 57.118 39.130 17.20 4.18 46.03 2.94
2660 3955 6.243216 AGTGGTTCAGTTTTACTGTCCTAA 57.757 37.500 17.20 1.93 46.03 2.69
2661 3956 6.655930 AGTGGTTCAGTTTTACTGTCCTAAA 58.344 36.000 17.20 1.66 46.03 1.85
2664 3959 9.059260 GTGGTTCAGTTTTACTGTCCTAAATAA 57.941 33.333 17.20 0.08 46.03 1.40
2685 3980 9.799106 AAATAAATAGGGATTCATACTGGACAG 57.201 33.333 0.00 0.00 0.00 3.51
2742 4037 6.014925 GGGCAGTTTTCTAAATTTTGGAGGTA 60.015 38.462 0.00 0.00 0.00 3.08
2945 4445 2.068519 GTGATGTCGATGCAGTGAACA 58.931 47.619 0.00 0.00 0.00 3.18
2986 4486 1.067635 CAAAATTTGCTGGAGGACGGG 60.068 52.381 0.00 0.00 0.00 5.28
3079 4579 1.248785 TTCAGGTTCCTCCTCGACCG 61.249 60.000 0.00 0.00 46.24 4.79
3080 4580 2.362632 AGGTTCCTCCTCGACCGG 60.363 66.667 0.00 0.00 44.42 5.28
3081 4581 3.459063 GGTTCCTCCTCGACCGGG 61.459 72.222 6.32 0.00 0.00 5.73
3082 4582 4.144703 GTTCCTCCTCGACCGGGC 62.145 72.222 6.32 0.00 0.00 6.13
3083 4583 4.689549 TTCCTCCTCGACCGGGCA 62.690 66.667 8.76 0.00 0.00 5.36
3086 4586 3.382832 CTCCTCGACCGGGCAGTT 61.383 66.667 8.76 0.00 0.00 3.16
3087 4587 3.358076 CTCCTCGACCGGGCAGTTC 62.358 68.421 8.76 0.00 0.00 3.01
3088 4588 4.452733 CCTCGACCGGGCAGTTCC 62.453 72.222 8.76 0.00 0.00 3.62
3089 4589 3.382832 CTCGACCGGGCAGTTCCT 61.383 66.667 8.76 0.00 34.39 3.36
3090 4590 3.358076 CTCGACCGGGCAGTTCCTC 62.358 68.421 8.76 0.00 34.39 3.71
3091 4591 4.452733 CGACCGGGCAGTTCCTCC 62.453 72.222 8.76 0.00 34.39 4.30
3092 4592 3.003763 GACCGGGCAGTTCCTCCT 61.004 66.667 0.00 0.00 34.39 3.69
3093 4593 3.003763 ACCGGGCAGTTCCTCCTC 61.004 66.667 6.32 0.00 34.39 3.71
3094 4594 4.148825 CCGGGCAGTTCCTCCTCG 62.149 72.222 0.00 0.00 34.39 4.63
3095 4595 3.068691 CGGGCAGTTCCTCCTCGA 61.069 66.667 0.00 0.00 34.39 4.04
3096 4596 2.579738 GGGCAGTTCCTCCTCGAC 59.420 66.667 0.00 0.00 34.39 4.20
3097 4597 1.985116 GGGCAGTTCCTCCTCGACT 60.985 63.158 0.00 0.00 34.39 4.18
3220 4720 4.918810 ATTACATTTTTCATCCCGAGGC 57.081 40.909 0.00 0.00 0.00 4.70
3434 4938 2.749621 GCACTGGAGACACATAAAAGGG 59.250 50.000 0.00 0.00 35.60 3.95
3440 4944 4.262617 GGAGACACATAAAAGGGAGAACC 58.737 47.826 0.00 0.00 40.67 3.62
3442 4946 5.313712 GAGACACATAAAAGGGAGAACCAA 58.686 41.667 0.00 0.00 43.89 3.67
3443 4947 5.316987 AGACACATAAAAGGGAGAACCAAG 58.683 41.667 0.00 0.00 43.89 3.61
3444 4948 5.073144 AGACACATAAAAGGGAGAACCAAGA 59.927 40.000 0.00 0.00 43.89 3.02
3498 5005 5.659440 TTTTATTAAGAGGGGCAAAGCAG 57.341 39.130 0.00 0.00 0.00 4.24
3499 5006 2.149973 ATTAAGAGGGGCAAAGCAGG 57.850 50.000 0.00 0.00 0.00 4.85
3502 5009 0.329596 AAGAGGGGCAAAGCAGGTAG 59.670 55.000 0.00 0.00 0.00 3.18
3503 5010 0.547712 AGAGGGGCAAAGCAGGTAGA 60.548 55.000 0.00 0.00 0.00 2.59
3504 5011 0.393132 GAGGGGCAAAGCAGGTAGAC 60.393 60.000 0.00 0.00 0.00 2.59
3505 5012 1.133809 AGGGGCAAAGCAGGTAGACA 61.134 55.000 0.00 0.00 0.00 3.41
3506 5013 0.960861 GGGGCAAAGCAGGTAGACAC 60.961 60.000 0.00 0.00 0.00 3.67
3507 5014 0.250727 GGGCAAAGCAGGTAGACACA 60.251 55.000 0.00 0.00 0.00 3.72
3508 5015 1.614317 GGGCAAAGCAGGTAGACACAT 60.614 52.381 0.00 0.00 0.00 3.21
3509 5016 2.355716 GGGCAAAGCAGGTAGACACATA 60.356 50.000 0.00 0.00 0.00 2.29
3510 5017 3.343617 GGCAAAGCAGGTAGACACATAA 58.656 45.455 0.00 0.00 0.00 1.90
3511 5018 3.756434 GGCAAAGCAGGTAGACACATAAA 59.244 43.478 0.00 0.00 0.00 1.40
3512 5019 4.217550 GGCAAAGCAGGTAGACACATAAAA 59.782 41.667 0.00 0.00 0.00 1.52
3513 5020 5.393962 GCAAAGCAGGTAGACACATAAAAG 58.606 41.667 0.00 0.00 0.00 2.27
3620 5127 4.685169 ACACAAGATTAATTGACAGCGG 57.315 40.909 0.00 0.00 34.20 5.52
3725 5232 1.678970 GTGCCCATTCACAGACCCC 60.679 63.158 0.00 0.00 36.97 4.95
3726 5233 2.043953 GCCCATTCACAGACCCCC 60.044 66.667 0.00 0.00 0.00 5.40
3738 5245 2.290705 ACAGACCCCCGGTAAAATTCTG 60.291 50.000 0.00 5.99 35.25 3.02
3739 5246 1.100510 GACCCCCGGTAAAATTCTGC 58.899 55.000 0.00 0.00 35.25 4.26
3740 5247 0.702316 ACCCCCGGTAAAATTCTGCT 59.298 50.000 0.00 0.00 32.11 4.24
3746 5253 4.081697 CCCCGGTAAAATTCTGCTTTCAAT 60.082 41.667 0.00 0.00 0.00 2.57
3748 5255 5.469479 CCGGTAAAATTCTGCTTTCAATGT 58.531 37.500 0.00 0.00 0.00 2.71
3751 5258 6.524586 CGGTAAAATTCTGCTTTCAATGTCTC 59.475 38.462 0.00 0.00 0.00 3.36
3757 5264 8.804912 AATTCTGCTTTCAATGTCTCTATTCT 57.195 30.769 0.00 0.00 0.00 2.40
3761 5268 4.036144 GCTTTCAATGTCTCTATTCTGCCC 59.964 45.833 0.00 0.00 0.00 5.36
3771 5278 4.220821 TCTCTATTCTGCCCGTAATCATCC 59.779 45.833 0.00 0.00 0.00 3.51
3780 5287 1.488812 CCGTAATCATCCTCACCCCAA 59.511 52.381 0.00 0.00 0.00 4.12
3781 5288 2.485479 CCGTAATCATCCTCACCCCAAG 60.485 54.545 0.00 0.00 0.00 3.61
3782 5289 2.485479 CGTAATCATCCTCACCCCAAGG 60.485 54.545 0.00 0.00 40.04 3.61
3804 5311 1.544314 GCTTCTGTGAGCCTTGGTTCT 60.544 52.381 5.19 0.00 36.66 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
374 375 5.073144 TCTCCCCATTCAAAGAAGTGTACTT 59.927 40.000 0.00 0.00 39.23 2.24
375 376 4.597507 TCTCCCCATTCAAAGAAGTGTACT 59.402 41.667 0.00 0.00 0.00 2.73
376 377 4.906618 TCTCCCCATTCAAAGAAGTGTAC 58.093 43.478 0.00 0.00 0.00 2.90
377 378 5.576563 TTCTCCCCATTCAAAGAAGTGTA 57.423 39.130 0.00 0.00 0.00 2.90
378 379 4.453480 TTCTCCCCATTCAAAGAAGTGT 57.547 40.909 0.00 0.00 0.00 3.55
379 380 5.990120 ATTTCTCCCCATTCAAAGAAGTG 57.010 39.130 0.00 0.00 0.00 3.16
380 381 9.942526 ATAATATTTCTCCCCATTCAAAGAAGT 57.057 29.630 0.00 0.00 0.00 3.01
390 391 9.783081 GCAATTCAAAATAATATTTCTCCCCAT 57.217 29.630 0.00 0.00 0.00 4.00
391 392 8.766476 TGCAATTCAAAATAATATTTCTCCCCA 58.234 29.630 0.00 0.00 0.00 4.96
392 393 9.045223 GTGCAATTCAAAATAATATTTCTCCCC 57.955 33.333 0.00 0.00 0.00 4.81
393 394 9.598517 TGTGCAATTCAAAATAATATTTCTCCC 57.401 29.630 0.00 0.00 0.00 4.30
415 416 4.114058 ACAATATCACCATTGCTTGTGC 57.886 40.909 0.00 0.00 39.13 4.57
416 417 9.236691 GTTTATACAATATCACCATTGCTTGTG 57.763 33.333 0.00 0.00 39.13 3.33
417 418 8.965819 TGTTTATACAATATCACCATTGCTTGT 58.034 29.630 0.00 0.00 39.13 3.16
418 419 9.970395 ATGTTTATACAATATCACCATTGCTTG 57.030 29.630 0.00 0.00 39.13 4.01
455 456 8.193438 TCACATTTGAAAACAATGTATGTGACA 58.807 29.630 18.13 3.71 42.97 3.58
456 457 8.572828 TCACATTTGAAAACAATGTATGTGAC 57.427 30.769 18.13 0.00 42.97 3.67
457 458 9.029243 GTTCACATTTGAAAACAATGTATGTGA 57.971 29.630 18.13 18.13 43.52 3.58
458 459 8.815189 TGTTCACATTTGAAAACAATGTATGTG 58.185 29.630 14.97 14.97 43.52 3.21
459 460 8.939201 TGTTCACATTTGAAAACAATGTATGT 57.061 26.923 0.00 0.00 43.52 2.29
487 488 5.480073 TGTTACCTAGGTCCTAGCGTAAAAA 59.520 40.000 25.85 19.35 34.67 1.94
488 489 5.016173 TGTTACCTAGGTCCTAGCGTAAAA 58.984 41.667 25.85 21.90 34.67 1.52
489 490 4.599041 TGTTACCTAGGTCCTAGCGTAAA 58.401 43.478 25.85 18.52 34.67 2.01
490 491 4.235079 TGTTACCTAGGTCCTAGCGTAA 57.765 45.455 20.32 23.07 33.12 3.18
491 492 3.931907 TGTTACCTAGGTCCTAGCGTA 57.068 47.619 20.32 17.96 33.12 4.42
492 493 2.814805 TGTTACCTAGGTCCTAGCGT 57.185 50.000 20.32 18.83 33.12 5.07
493 494 3.799232 GCAATGTTACCTAGGTCCTAGCG 60.799 52.174 20.32 14.64 33.12 4.26
494 495 3.134081 TGCAATGTTACCTAGGTCCTAGC 59.866 47.826 20.32 16.12 33.12 3.42
495 496 5.552870 ATGCAATGTTACCTAGGTCCTAG 57.447 43.478 20.32 17.97 34.16 3.02
496 497 5.163237 GGAATGCAATGTTACCTAGGTCCTA 60.163 44.000 20.32 6.00 0.00 2.94
497 498 4.385310 GGAATGCAATGTTACCTAGGTCCT 60.385 45.833 20.32 0.00 0.00 3.85
498 499 3.883489 GGAATGCAATGTTACCTAGGTCC 59.117 47.826 20.32 11.19 0.00 4.46
499 500 4.335594 GTGGAATGCAATGTTACCTAGGTC 59.664 45.833 20.32 5.56 0.00 3.85
500 501 4.018415 AGTGGAATGCAATGTTACCTAGGT 60.018 41.667 20.57 20.57 0.00 3.08
501 502 4.526970 AGTGGAATGCAATGTTACCTAGG 58.473 43.478 7.41 7.41 0.00 3.02
502 503 6.349300 ACTAGTGGAATGCAATGTTACCTAG 58.651 40.000 0.00 0.00 0.00 3.02
503 504 6.308015 ACTAGTGGAATGCAATGTTACCTA 57.692 37.500 0.00 0.00 0.00 3.08
504 505 5.179452 ACTAGTGGAATGCAATGTTACCT 57.821 39.130 0.00 0.00 0.00 3.08
505 506 5.447279 CGAACTAGTGGAATGCAATGTTACC 60.447 44.000 0.00 0.00 0.00 2.85
506 507 5.350365 TCGAACTAGTGGAATGCAATGTTAC 59.650 40.000 0.00 0.00 0.00 2.50
507 508 5.483811 TCGAACTAGTGGAATGCAATGTTA 58.516 37.500 0.00 0.00 0.00 2.41
508 509 4.323417 TCGAACTAGTGGAATGCAATGTT 58.677 39.130 0.00 0.00 0.00 2.71
509 510 3.935203 CTCGAACTAGTGGAATGCAATGT 59.065 43.478 0.00 0.00 0.00 2.71
510 511 3.310774 CCTCGAACTAGTGGAATGCAATG 59.689 47.826 0.00 0.00 0.00 2.82
511 512 3.197766 TCCTCGAACTAGTGGAATGCAAT 59.802 43.478 0.00 0.00 31.62 3.56
512 513 2.565391 TCCTCGAACTAGTGGAATGCAA 59.435 45.455 0.00 0.00 31.62 4.08
513 514 2.094182 GTCCTCGAACTAGTGGAATGCA 60.094 50.000 0.00 0.00 35.81 3.96
514 515 2.541556 GTCCTCGAACTAGTGGAATGC 58.458 52.381 0.00 0.00 35.81 3.56
515 516 2.496070 TGGTCCTCGAACTAGTGGAATG 59.504 50.000 0.00 0.00 35.81 2.67
516 517 2.816411 TGGTCCTCGAACTAGTGGAAT 58.184 47.619 0.00 0.00 35.81 3.01
517 518 2.297698 TGGTCCTCGAACTAGTGGAA 57.702 50.000 0.00 0.00 35.81 3.53
518 519 2.376109 GATGGTCCTCGAACTAGTGGA 58.624 52.381 0.00 0.00 0.00 4.02
519 520 1.065701 CGATGGTCCTCGAACTAGTGG 59.934 57.143 0.00 0.00 41.12 4.00
520 521 1.743958 ACGATGGTCCTCGAACTAGTG 59.256 52.381 15.00 0.00 41.12 2.74
521 522 1.743958 CACGATGGTCCTCGAACTAGT 59.256 52.381 15.00 0.00 41.12 2.57
522 523 2.014857 TCACGATGGTCCTCGAACTAG 58.985 52.381 15.00 0.00 41.12 2.57
523 524 2.014857 CTCACGATGGTCCTCGAACTA 58.985 52.381 15.00 0.00 41.12 2.24
524 525 0.811915 CTCACGATGGTCCTCGAACT 59.188 55.000 15.00 0.00 41.12 3.01
525 526 0.809385 TCTCACGATGGTCCTCGAAC 59.191 55.000 15.00 0.00 41.12 3.95
526 527 1.095600 CTCTCACGATGGTCCTCGAA 58.904 55.000 15.00 4.84 41.12 3.71
527 528 0.035343 ACTCTCACGATGGTCCTCGA 60.035 55.000 15.00 0.00 41.12 4.04
528 529 1.331138 GTACTCTCACGATGGTCCTCG 59.669 57.143 8.60 8.60 44.14 4.63
529 530 2.366533 TGTACTCTCACGATGGTCCTC 58.633 52.381 0.00 0.00 0.00 3.71
530 531 2.509166 TGTACTCTCACGATGGTCCT 57.491 50.000 0.00 0.00 0.00 3.85
531 532 2.159226 CCTTGTACTCTCACGATGGTCC 60.159 54.545 0.00 0.00 0.00 4.46
532 533 2.753452 TCCTTGTACTCTCACGATGGTC 59.247 50.000 0.00 0.00 0.00 4.02
533 534 2.492484 GTCCTTGTACTCTCACGATGGT 59.508 50.000 0.00 0.00 0.00 3.55
534 535 2.159226 GGTCCTTGTACTCTCACGATGG 60.159 54.545 0.00 0.00 0.00 3.51
535 536 2.478031 CGGTCCTTGTACTCTCACGATG 60.478 54.545 0.00 0.00 0.00 3.84
536 537 1.743958 CGGTCCTTGTACTCTCACGAT 59.256 52.381 0.00 0.00 0.00 3.73
537 538 1.162698 CGGTCCTTGTACTCTCACGA 58.837 55.000 0.00 0.00 0.00 4.35
538 539 0.879765 ACGGTCCTTGTACTCTCACG 59.120 55.000 0.00 0.00 0.00 4.35
539 540 1.884579 TCACGGTCCTTGTACTCTCAC 59.115 52.381 0.00 0.00 0.00 3.51
540 541 1.884579 GTCACGGTCCTTGTACTCTCA 59.115 52.381 0.00 0.00 0.00 3.27
541 542 2.161030 AGTCACGGTCCTTGTACTCTC 58.839 52.381 0.00 0.00 0.00 3.20
542 543 2.289592 AGTCACGGTCCTTGTACTCT 57.710 50.000 0.00 0.00 0.00 3.24
543 544 5.824904 TTATAGTCACGGTCCTTGTACTC 57.175 43.478 0.00 0.00 0.00 2.59
544 545 6.786967 AATTATAGTCACGGTCCTTGTACT 57.213 37.500 0.00 1.40 0.00 2.73
545 546 8.574737 AGATAATTATAGTCACGGTCCTTGTAC 58.425 37.037 0.00 0.00 0.00 2.90
546 547 8.701908 AGATAATTATAGTCACGGTCCTTGTA 57.298 34.615 0.00 0.00 0.00 2.41
547 548 7.506261 AGAGATAATTATAGTCACGGTCCTTGT 59.494 37.037 0.00 0.00 0.00 3.16
548 549 7.810282 CAGAGATAATTATAGTCACGGTCCTTG 59.190 40.741 0.00 0.00 0.00 3.61
549 550 7.524038 GCAGAGATAATTATAGTCACGGTCCTT 60.524 40.741 0.00 0.00 0.00 3.36
550 551 6.071840 GCAGAGATAATTATAGTCACGGTCCT 60.072 42.308 0.00 0.00 0.00 3.85
551 552 6.094061 GCAGAGATAATTATAGTCACGGTCC 58.906 44.000 0.00 0.00 0.00 4.46
552 553 6.094061 GGCAGAGATAATTATAGTCACGGTC 58.906 44.000 0.00 0.00 0.00 4.79
553 554 5.047235 GGGCAGAGATAATTATAGTCACGGT 60.047 44.000 0.00 0.00 0.00 4.83
554 555 5.411781 GGGCAGAGATAATTATAGTCACGG 58.588 45.833 0.00 0.00 0.00 4.94
555 556 5.411781 GGGGCAGAGATAATTATAGTCACG 58.588 45.833 0.00 0.00 0.00 4.35
556 557 5.735766 GGGGGCAGAGATAATTATAGTCAC 58.264 45.833 0.00 0.00 0.00 3.67
576 577 0.975887 CCCAAACAACAATCAGGGGG 59.024 55.000 0.00 0.00 32.59 5.40
577 578 0.321346 GCCCAAACAACAATCAGGGG 59.679 55.000 0.00 0.00 36.79 4.79
578 579 0.321346 GGCCCAAACAACAATCAGGG 59.679 55.000 0.00 0.00 39.33 4.45
579 580 1.047002 TGGCCCAAACAACAATCAGG 58.953 50.000 0.00 0.00 0.00 3.86
580 581 3.405823 AATGGCCCAAACAACAATCAG 57.594 42.857 0.00 0.00 0.00 2.90
581 582 3.135348 TGAAATGGCCCAAACAACAATCA 59.865 39.130 0.00 0.00 0.00 2.57
582 583 3.498018 GTGAAATGGCCCAAACAACAATC 59.502 43.478 0.00 0.00 0.00 2.67
583 584 3.136260 AGTGAAATGGCCCAAACAACAAT 59.864 39.130 0.00 0.00 0.00 2.71
584 585 2.503356 AGTGAAATGGCCCAAACAACAA 59.497 40.909 0.00 0.00 0.00 2.83
585 586 2.114616 AGTGAAATGGCCCAAACAACA 58.885 42.857 0.00 0.00 0.00 3.33
586 587 2.482864 CAGTGAAATGGCCCAAACAAC 58.517 47.619 0.00 0.00 0.00 3.32
587 588 1.202627 GCAGTGAAATGGCCCAAACAA 60.203 47.619 0.00 0.00 0.00 2.83
588 589 0.392336 GCAGTGAAATGGCCCAAACA 59.608 50.000 0.00 0.00 0.00 2.83
589 590 0.392336 TGCAGTGAAATGGCCCAAAC 59.608 50.000 0.00 0.00 0.00 2.93
590 591 1.070445 CTTGCAGTGAAATGGCCCAAA 59.930 47.619 0.00 0.00 0.00 3.28
591 592 0.680618 CTTGCAGTGAAATGGCCCAA 59.319 50.000 0.00 0.00 0.00 4.12
592 593 0.178967 TCTTGCAGTGAAATGGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
593 594 0.968405 TTCTTGCAGTGAAATGGCCC 59.032 50.000 0.00 0.00 0.00 5.80
594 595 2.224018 TGTTTCTTGCAGTGAAATGGCC 60.224 45.455 16.33 0.00 36.10 5.36
595 596 3.096489 TGTTTCTTGCAGTGAAATGGC 57.904 42.857 16.33 7.78 36.10 4.40
596 597 6.607735 ATTTTGTTTCTTGCAGTGAAATGG 57.392 33.333 16.33 0.00 36.10 3.16
597 598 7.912383 AGAATTTTGTTTCTTGCAGTGAAATG 58.088 30.769 16.33 0.00 36.10 2.32
598 599 8.496707 AAGAATTTTGTTTCTTGCAGTGAAAT 57.503 26.923 16.33 3.86 42.78 2.17
599 600 7.903995 AAGAATTTTGTTTCTTGCAGTGAAA 57.096 28.000 11.34 11.34 42.78 2.69
600 601 8.250332 ACTAAGAATTTTGTTTCTTGCAGTGAA 58.750 29.630 9.16 0.87 43.84 3.18
601 602 7.771183 ACTAAGAATTTTGTTTCTTGCAGTGA 58.229 30.769 9.16 0.00 43.84 3.41
602 603 7.992180 ACTAAGAATTTTGTTTCTTGCAGTG 57.008 32.000 9.16 0.00 43.84 3.66
603 604 8.250332 TCAACTAAGAATTTTGTTTCTTGCAGT 58.750 29.630 9.16 3.90 43.84 4.40
604 605 8.633075 TCAACTAAGAATTTTGTTTCTTGCAG 57.367 30.769 9.16 3.37 43.84 4.41
605 606 9.248291 GATCAACTAAGAATTTTGTTTCTTGCA 57.752 29.630 9.16 0.00 43.84 4.08
606 607 8.703336 GGATCAACTAAGAATTTTGTTTCTTGC 58.297 33.333 9.16 0.00 43.84 4.01
607 608 9.748708 TGGATCAACTAAGAATTTTGTTTCTTG 57.251 29.630 9.16 3.43 43.84 3.02
654 655 9.890629 TGACTCATATTTAAGCAGAGTATGTTT 57.109 29.630 0.00 0.00 39.47 2.83
655 656 9.890629 TTGACTCATATTTAAGCAGAGTATGTT 57.109 29.630 0.00 0.00 39.47 2.71
656 657 9.319143 GTTGACTCATATTTAAGCAGAGTATGT 57.681 33.333 0.00 0.00 39.47 2.29
657 658 9.539825 AGTTGACTCATATTTAAGCAGAGTATG 57.460 33.333 0.00 0.00 39.47 2.39
658 659 9.757227 GAGTTGACTCATATTTAAGCAGAGTAT 57.243 33.333 6.28 0.00 42.42 2.12
675 676 2.432628 CGGCCGGTGAGTTGACTC 60.433 66.667 20.10 4.20 43.15 3.36
676 677 2.915659 TCGGCCGGTGAGTTGACT 60.916 61.111 27.83 0.00 0.00 3.41
677 678 2.432628 CTCGGCCGGTGAGTTGAC 60.433 66.667 27.83 0.00 0.00 3.18
678 679 3.691342 CCTCGGCCGGTGAGTTGA 61.691 66.667 27.83 1.15 0.00 3.18
682 683 4.697756 TTTGCCTCGGCCGGTGAG 62.698 66.667 27.83 15.80 41.09 3.51
683 684 4.257654 TTTTGCCTCGGCCGGTGA 62.258 61.111 27.83 4.76 41.09 4.02
684 685 3.737172 CTTTTGCCTCGGCCGGTG 61.737 66.667 27.83 17.88 41.09 4.94
685 686 1.906105 TATCTTTTGCCTCGGCCGGT 61.906 55.000 27.83 0.00 41.09 5.28
686 687 1.153249 TATCTTTTGCCTCGGCCGG 60.153 57.895 27.83 16.14 41.09 6.13
687 688 0.179084 TCTATCTTTTGCCTCGGCCG 60.179 55.000 22.12 22.12 41.09 6.13
688 689 1.139058 TCTCTATCTTTTGCCTCGGCC 59.861 52.381 5.33 0.00 41.09 6.13
689 690 2.478831 CTCTCTATCTTTTGCCTCGGC 58.521 52.381 0.00 0.00 42.35 5.54
690 691 2.695666 TCCTCTCTATCTTTTGCCTCGG 59.304 50.000 0.00 0.00 0.00 4.63
691 692 3.383185 AGTCCTCTCTATCTTTTGCCTCG 59.617 47.826 0.00 0.00 0.00 4.63
692 693 5.351948 AAGTCCTCTCTATCTTTTGCCTC 57.648 43.478 0.00 0.00 0.00 4.70
693 694 6.875972 TTAAGTCCTCTCTATCTTTTGCCT 57.124 37.500 0.00 0.00 0.00 4.75
694 695 7.505258 AGATTAAGTCCTCTCTATCTTTTGCC 58.495 38.462 0.00 0.00 0.00 4.52
698 699 9.629878 TCGTTAGATTAAGTCCTCTCTATCTTT 57.370 33.333 0.00 0.00 31.18 2.52
699 700 9.629878 TTCGTTAGATTAAGTCCTCTCTATCTT 57.370 33.333 0.00 0.00 31.18 2.40
700 701 9.280174 CTTCGTTAGATTAAGTCCTCTCTATCT 57.720 37.037 0.00 0.00 32.45 1.98
701 702 9.275398 TCTTCGTTAGATTAAGTCCTCTCTATC 57.725 37.037 0.00 0.00 0.00 2.08
702 703 9.629878 TTCTTCGTTAGATTAAGTCCTCTCTAT 57.370 33.333 0.00 0.00 31.54 1.98
703 704 9.629878 ATTCTTCGTTAGATTAAGTCCTCTCTA 57.370 33.333 0.00 0.00 31.54 2.43
704 705 7.941431 TTCTTCGTTAGATTAAGTCCTCTCT 57.059 36.000 0.00 0.00 31.54 3.10
705 706 7.650104 CCATTCTTCGTTAGATTAAGTCCTCTC 59.350 40.741 0.00 0.00 31.54 3.20
706 707 7.493367 CCATTCTTCGTTAGATTAAGTCCTCT 58.507 38.462 0.00 0.00 31.54 3.69
707 708 6.201234 GCCATTCTTCGTTAGATTAAGTCCTC 59.799 42.308 0.00 0.00 31.54 3.71
708 709 6.049790 GCCATTCTTCGTTAGATTAAGTCCT 58.950 40.000 0.00 0.00 31.54 3.85
709 710 6.049790 AGCCATTCTTCGTTAGATTAAGTCC 58.950 40.000 0.00 0.00 31.54 3.85
710 711 6.757010 TGAGCCATTCTTCGTTAGATTAAGTC 59.243 38.462 0.00 0.00 31.54 3.01
711 712 6.535508 GTGAGCCATTCTTCGTTAGATTAAGT 59.464 38.462 0.00 0.00 31.54 2.24
712 713 6.018669 GGTGAGCCATTCTTCGTTAGATTAAG 60.019 42.308 0.00 0.00 31.24 1.85
713 714 5.815740 GGTGAGCCATTCTTCGTTAGATTAA 59.184 40.000 0.00 0.00 31.24 1.40
714 715 5.128827 AGGTGAGCCATTCTTCGTTAGATTA 59.871 40.000 0.00 0.00 37.19 1.75
715 716 4.080863 AGGTGAGCCATTCTTCGTTAGATT 60.081 41.667 0.00 0.00 37.19 2.40
716 717 3.452627 AGGTGAGCCATTCTTCGTTAGAT 59.547 43.478 0.00 0.00 37.19 1.98
717 718 2.832129 AGGTGAGCCATTCTTCGTTAGA 59.168 45.455 0.00 0.00 37.19 2.10
718 719 3.252974 AGGTGAGCCATTCTTCGTTAG 57.747 47.619 0.00 0.00 37.19 2.34
719 720 3.767673 AGTAGGTGAGCCATTCTTCGTTA 59.232 43.478 0.00 0.00 37.19 3.18
720 721 2.567615 AGTAGGTGAGCCATTCTTCGTT 59.432 45.455 0.00 0.00 37.19 3.85
721 722 2.180276 AGTAGGTGAGCCATTCTTCGT 58.820 47.619 0.00 0.00 37.19 3.85
722 723 2.932614 CAAGTAGGTGAGCCATTCTTCG 59.067 50.000 0.00 0.00 37.19 3.79
723 724 2.680339 GCAAGTAGGTGAGCCATTCTTC 59.320 50.000 0.00 0.00 37.19 2.87
724 725 2.040278 TGCAAGTAGGTGAGCCATTCTT 59.960 45.455 0.00 0.00 37.19 2.52
725 726 1.630369 TGCAAGTAGGTGAGCCATTCT 59.370 47.619 0.00 0.00 37.19 2.40
726 727 2.113860 TGCAAGTAGGTGAGCCATTC 57.886 50.000 0.00 0.00 37.19 2.67
727 728 2.584835 TTGCAAGTAGGTGAGCCATT 57.415 45.000 0.00 0.00 37.19 3.16
728 729 2.814805 ATTGCAAGTAGGTGAGCCAT 57.185 45.000 4.94 0.00 37.19 4.40
729 730 2.584835 AATTGCAAGTAGGTGAGCCA 57.415 45.000 4.94 0.00 37.19 4.75
730 731 3.255642 TGAAAATTGCAAGTAGGTGAGCC 59.744 43.478 4.94 0.00 0.00 4.70
731 732 4.503741 TGAAAATTGCAAGTAGGTGAGC 57.496 40.909 4.94 0.00 0.00 4.26
732 733 5.691754 GGTTTGAAAATTGCAAGTAGGTGAG 59.308 40.000 4.94 0.00 0.00 3.51
733 734 5.127845 TGGTTTGAAAATTGCAAGTAGGTGA 59.872 36.000 4.94 0.00 0.00 4.02
734 735 5.234116 GTGGTTTGAAAATTGCAAGTAGGTG 59.766 40.000 4.94 0.00 0.00 4.00
735 736 5.105146 TGTGGTTTGAAAATTGCAAGTAGGT 60.105 36.000 4.94 0.00 0.00 3.08
736 737 5.355596 TGTGGTTTGAAAATTGCAAGTAGG 58.644 37.500 4.94 0.00 0.00 3.18
737 738 7.481275 AATGTGGTTTGAAAATTGCAAGTAG 57.519 32.000 4.94 0.00 0.00 2.57
738 739 7.856145 AAATGTGGTTTGAAAATTGCAAGTA 57.144 28.000 4.94 0.00 0.00 2.24
790 791 4.424626 TCGATCTCCAAACTTGATCTTCG 58.575 43.478 0.00 0.00 35.68 3.79
794 795 6.457528 GGTTCATTCGATCTCCAAACTTGATC 60.458 42.308 0.00 0.00 34.81 2.92
800 801 5.412904 AGAAAGGTTCATTCGATCTCCAAAC 59.587 40.000 0.00 0.00 32.04 2.93
827 828 5.196695 GGATGGAGGAAGCTAAGAAACATT 58.803 41.667 0.00 0.00 0.00 2.71
881 882 6.029346 TGCGATCATCATCTAATTAGCTGA 57.971 37.500 18.60 18.60 33.56 4.26
949 961 7.378181 AGAAGAGATCAAAACTTGAGAGAGAC 58.622 38.462 0.00 0.00 43.98 3.36
954 984 6.496565 AGAGGAGAAGAGATCAAAACTTGAGA 59.503 38.462 0.00 0.00 43.98 3.27
969 999 2.243736 GGAAGAGAGGGAGAGGAGAAGA 59.756 54.545 0.00 0.00 0.00 2.87
1006 1036 2.481104 GCAGAGGGAGAAGAAGTGATCG 60.481 54.545 0.00 0.00 0.00 3.69
1009 1039 2.175202 GAGCAGAGGGAGAAGAAGTGA 58.825 52.381 0.00 0.00 0.00 3.41
1097 1129 8.821147 ACGAACTTATTATCAGTGTTGTACAA 57.179 30.769 3.59 3.59 0.00 2.41
1101 1133 8.922676 CACTAACGAACTTATTATCAGTGTTGT 58.077 33.333 0.00 0.00 0.00 3.32
1102 1134 8.922676 ACACTAACGAACTTATTATCAGTGTTG 58.077 33.333 0.00 0.00 40.73 3.33
1103 1135 9.136952 GACACTAACGAACTTATTATCAGTGTT 57.863 33.333 5.16 0.00 42.88 3.32
1104 1136 7.484007 CGACACTAACGAACTTATTATCAGTGT 59.516 37.037 3.40 3.40 44.83 3.55
1125 1157 9.068008 TCACAAAAATAGAAAGAAAAACGACAC 57.932 29.630 0.00 0.00 0.00 3.67
1180 1212 5.745312 ATGAAAATCAGAAGGGGAAAACC 57.255 39.130 0.00 0.00 39.11 3.27
1181 1213 7.814587 CAGTAATGAAAATCAGAAGGGGAAAAC 59.185 37.037 0.00 0.00 0.00 2.43
1182 1214 7.728083 TCAGTAATGAAAATCAGAAGGGGAAAA 59.272 33.333 0.00 0.00 0.00 2.29
1183 1215 7.237982 TCAGTAATGAAAATCAGAAGGGGAAA 58.762 34.615 0.00 0.00 0.00 3.13
1184 1216 6.789268 TCAGTAATGAAAATCAGAAGGGGAA 58.211 36.000 0.00 0.00 0.00 3.97
1185 1217 6.387192 TCAGTAATGAAAATCAGAAGGGGA 57.613 37.500 0.00 0.00 0.00 4.81
1186 1218 7.466746 TTTCAGTAATGAAAATCAGAAGGGG 57.533 36.000 15.48 0.00 35.17 4.79
1187 1219 7.814587 GGTTTTCAGTAATGAAAATCAGAAGGG 59.185 37.037 27.92 0.00 45.67 3.95
1188 1220 8.748380 GGTTTTCAGTAATGAAAATCAGAAGG 57.252 34.615 27.92 0.00 45.67 3.46
1194 1226 7.437862 TGCAGTTGGTTTTCAGTAATGAAAATC 59.562 33.333 27.81 27.28 45.67 2.17
1195 1227 7.271511 TGCAGTTGGTTTTCAGTAATGAAAAT 58.728 30.769 27.81 13.26 45.67 1.82
1196 1228 6.634805 TGCAGTTGGTTTTCAGTAATGAAAA 58.365 32.000 23.18 23.18 43.10 2.29
1197 1229 6.214191 TGCAGTTGGTTTTCAGTAATGAAA 57.786 33.333 13.98 13.98 36.17 2.69
1198 1230 5.843673 TGCAGTTGGTTTTCAGTAATGAA 57.156 34.783 0.56 0.56 0.00 2.57
1199 1231 5.843673 TTGCAGTTGGTTTTCAGTAATGA 57.156 34.783 0.00 0.00 0.00 2.57
1200 1232 5.234116 GGTTTGCAGTTGGTTTTCAGTAATG 59.766 40.000 0.00 0.00 0.00 1.90
1201 1233 5.105146 TGGTTTGCAGTTGGTTTTCAGTAAT 60.105 36.000 0.00 0.00 0.00 1.89
1202 1234 4.220821 TGGTTTGCAGTTGGTTTTCAGTAA 59.779 37.500 0.00 0.00 0.00 2.24
1203 1235 3.764434 TGGTTTGCAGTTGGTTTTCAGTA 59.236 39.130 0.00 0.00 0.00 2.74
1204 1236 2.564947 TGGTTTGCAGTTGGTTTTCAGT 59.435 40.909 0.00 0.00 0.00 3.41
1205 1237 3.244033 TGGTTTGCAGTTGGTTTTCAG 57.756 42.857 0.00 0.00 0.00 3.02
1206 1238 3.685139 TTGGTTTGCAGTTGGTTTTCA 57.315 38.095 0.00 0.00 0.00 2.69
1207 1239 4.454161 ACTTTTGGTTTGCAGTTGGTTTTC 59.546 37.500 0.00 0.00 0.00 2.29
1208 1240 4.393834 ACTTTTGGTTTGCAGTTGGTTTT 58.606 34.783 0.00 0.00 0.00 2.43
1209 1241 4.014569 ACTTTTGGTTTGCAGTTGGTTT 57.985 36.364 0.00 0.00 0.00 3.27
1210 1242 3.694043 ACTTTTGGTTTGCAGTTGGTT 57.306 38.095 0.00 0.00 0.00 3.67
1211 1243 5.105146 TGAATACTTTTGGTTTGCAGTTGGT 60.105 36.000 0.00 0.00 0.00 3.67
1212 1244 5.355596 TGAATACTTTTGGTTTGCAGTTGG 58.644 37.500 0.00 0.00 0.00 3.77
1213 1245 5.050837 GCTGAATACTTTTGGTTTGCAGTTG 60.051 40.000 0.00 0.00 0.00 3.16
1214 1246 5.049828 GCTGAATACTTTTGGTTTGCAGTT 58.950 37.500 0.00 0.00 0.00 3.16
1215 1247 4.501400 GGCTGAATACTTTTGGTTTGCAGT 60.501 41.667 0.00 0.00 0.00 4.40
1216 1248 3.989817 GGCTGAATACTTTTGGTTTGCAG 59.010 43.478 0.00 0.00 0.00 4.41
1217 1249 3.640967 AGGCTGAATACTTTTGGTTTGCA 59.359 39.130 0.00 0.00 0.00 4.08
1218 1250 4.237724 GAGGCTGAATACTTTTGGTTTGC 58.762 43.478 0.00 0.00 0.00 3.68
1219 1251 5.221224 TGTGAGGCTGAATACTTTTGGTTTG 60.221 40.000 0.00 0.00 0.00 2.93
1220 1252 4.892934 TGTGAGGCTGAATACTTTTGGTTT 59.107 37.500 0.00 0.00 0.00 3.27
1221 1253 4.278419 GTGTGAGGCTGAATACTTTTGGTT 59.722 41.667 0.00 0.00 0.00 3.67
1222 1254 3.821033 GTGTGAGGCTGAATACTTTTGGT 59.179 43.478 0.00 0.00 0.00 3.67
1223 1255 4.074970 AGTGTGAGGCTGAATACTTTTGG 58.925 43.478 0.00 0.00 0.00 3.28
1224 1256 5.122396 GGTAGTGTGAGGCTGAATACTTTTG 59.878 44.000 0.00 0.00 0.00 2.44
1225 1257 5.221843 TGGTAGTGTGAGGCTGAATACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
1226 1258 4.286032 TGGTAGTGTGAGGCTGAATACTTT 59.714 41.667 0.00 0.00 0.00 2.66
1227 1259 3.838317 TGGTAGTGTGAGGCTGAATACTT 59.162 43.478 0.00 0.00 0.00 2.24
1228 1260 3.441101 TGGTAGTGTGAGGCTGAATACT 58.559 45.455 0.00 0.00 0.00 2.12
1229 1261 3.887621 TGGTAGTGTGAGGCTGAATAC 57.112 47.619 0.00 0.00 0.00 1.89
1230 1262 3.197766 CCTTGGTAGTGTGAGGCTGAATA 59.802 47.826 0.00 0.00 0.00 1.75
1231 1263 2.026822 CCTTGGTAGTGTGAGGCTGAAT 60.027 50.000 0.00 0.00 0.00 2.57
1232 1264 1.347707 CCTTGGTAGTGTGAGGCTGAA 59.652 52.381 0.00 0.00 0.00 3.02
1233 1265 0.976641 CCTTGGTAGTGTGAGGCTGA 59.023 55.000 0.00 0.00 0.00 4.26
1234 1266 0.687354 ACCTTGGTAGTGTGAGGCTG 59.313 55.000 0.00 0.00 32.42 4.85
1235 1267 0.977395 GACCTTGGTAGTGTGAGGCT 59.023 55.000 0.00 0.00 32.42 4.58
1236 1268 0.036294 GGACCTTGGTAGTGTGAGGC 60.036 60.000 0.00 0.00 32.42 4.70
1237 1269 0.613777 GGGACCTTGGTAGTGTGAGG 59.386 60.000 0.00 0.00 35.39 3.86
1238 1270 1.002087 GTGGGACCTTGGTAGTGTGAG 59.998 57.143 0.00 0.00 0.00 3.51
1239 1271 1.053424 GTGGGACCTTGGTAGTGTGA 58.947 55.000 0.00 0.00 0.00 3.58
1240 1272 0.320421 CGTGGGACCTTGGTAGTGTG 60.320 60.000 0.00 0.00 0.00 3.82
1241 1273 2.055299 CGTGGGACCTTGGTAGTGT 58.945 57.895 0.00 0.00 0.00 3.55
1242 1274 1.375523 GCGTGGGACCTTGGTAGTG 60.376 63.158 0.00 0.00 0.00 2.74
1243 1275 1.412453 TTGCGTGGGACCTTGGTAGT 61.412 55.000 0.00 0.00 0.00 2.73
1244 1276 0.953960 GTTGCGTGGGACCTTGGTAG 60.954 60.000 0.00 0.00 0.00 3.18
1245 1277 1.071814 GTTGCGTGGGACCTTGGTA 59.928 57.895 0.00 0.00 0.00 3.25
1246 1278 2.203294 GTTGCGTGGGACCTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
1247 1279 3.353836 CGTTGCGTGGGACCTTGG 61.354 66.667 0.00 0.00 0.00 3.61
1248 1280 4.025401 GCGTTGCGTGGGACCTTG 62.025 66.667 0.00 0.00 0.00 3.61
1249 1281 4.555709 TGCGTTGCGTGGGACCTT 62.556 61.111 0.00 0.00 0.00 3.50
1250 1282 4.988598 CTGCGTTGCGTGGGACCT 62.989 66.667 0.00 0.00 0.00 3.85
1253 1285 3.597675 TATGCTGCGTTGCGTGGGA 62.598 57.895 0.00 0.00 35.36 4.37
1254 1286 2.193865 TTTATGCTGCGTTGCGTGGG 62.194 55.000 0.00 0.00 35.36 4.61
1255 1287 1.065031 GTTTATGCTGCGTTGCGTGG 61.065 55.000 0.00 0.00 35.36 4.94
1256 1288 1.065031 GGTTTATGCTGCGTTGCGTG 61.065 55.000 0.00 0.00 35.36 5.34
1257 1289 1.209127 GGTTTATGCTGCGTTGCGT 59.791 52.632 0.00 2.47 35.36 5.24
1258 1290 1.065031 GTGGTTTATGCTGCGTTGCG 61.065 55.000 0.00 0.00 35.36 4.85
1259 1291 0.732538 GGTGGTTTATGCTGCGTTGC 60.733 55.000 0.00 0.00 0.00 4.17
1260 1292 0.881118 AGGTGGTTTATGCTGCGTTG 59.119 50.000 0.00 0.00 0.00 4.10
1261 1293 2.483014 TAGGTGGTTTATGCTGCGTT 57.517 45.000 0.00 0.00 0.00 4.84
1262 1294 2.483014 TTAGGTGGTTTATGCTGCGT 57.517 45.000 0.00 0.00 0.00 5.24
1263 1295 2.159435 GGTTTAGGTGGTTTATGCTGCG 60.159 50.000 0.00 0.00 0.00 5.18
1264 1296 2.823154 TGGTTTAGGTGGTTTATGCTGC 59.177 45.455 0.00 0.00 0.00 5.25
1265 1297 5.461032 TTTGGTTTAGGTGGTTTATGCTG 57.539 39.130 0.00 0.00 0.00 4.41
1266 1298 5.510690 GCTTTTGGTTTAGGTGGTTTATGCT 60.511 40.000 0.00 0.00 0.00 3.79
1267 1299 4.688879 GCTTTTGGTTTAGGTGGTTTATGC 59.311 41.667 0.00 0.00 0.00 3.14
1268 1300 5.221541 TGGCTTTTGGTTTAGGTGGTTTATG 60.222 40.000 0.00 0.00 0.00 1.90
1269 1301 4.902448 TGGCTTTTGGTTTAGGTGGTTTAT 59.098 37.500 0.00 0.00 0.00 1.40
1270 1302 4.287552 TGGCTTTTGGTTTAGGTGGTTTA 58.712 39.130 0.00 0.00 0.00 2.01
1271 1303 3.108376 TGGCTTTTGGTTTAGGTGGTTT 58.892 40.909 0.00 0.00 0.00 3.27
1272 1304 2.753247 TGGCTTTTGGTTTAGGTGGTT 58.247 42.857 0.00 0.00 0.00 3.67
1273 1305 2.432874 GTTGGCTTTTGGTTTAGGTGGT 59.567 45.455 0.00 0.00 0.00 4.16
1274 1306 2.432510 TGTTGGCTTTTGGTTTAGGTGG 59.567 45.455 0.00 0.00 0.00 4.61
1275 1307 3.810310 TGTTGGCTTTTGGTTTAGGTG 57.190 42.857 0.00 0.00 0.00 4.00
1276 1308 3.964031 TCATGTTGGCTTTTGGTTTAGGT 59.036 39.130 0.00 0.00 0.00 3.08
1277 1309 4.599047 TCATGTTGGCTTTTGGTTTAGG 57.401 40.909 0.00 0.00 0.00 2.69
1278 1310 7.495135 AATTTCATGTTGGCTTTTGGTTTAG 57.505 32.000 0.00 0.00 0.00 1.85
1279 1311 7.872113 AAATTTCATGTTGGCTTTTGGTTTA 57.128 28.000 0.00 0.00 0.00 2.01
1280 1312 6.772360 AAATTTCATGTTGGCTTTTGGTTT 57.228 29.167 0.00 0.00 0.00 3.27
1281 1313 6.376581 TGAAAATTTCATGTTGGCTTTTGGTT 59.623 30.769 4.03 0.00 34.08 3.67
1282 1314 5.884792 TGAAAATTTCATGTTGGCTTTTGGT 59.115 32.000 4.03 0.00 34.08 3.67
1283 1315 6.038492 ACTGAAAATTTCATGTTGGCTTTTGG 59.962 34.615 9.02 0.00 39.30 3.28
1284 1316 7.018635 ACTGAAAATTTCATGTTGGCTTTTG 57.981 32.000 9.02 0.00 39.30 2.44
1285 1317 7.628769 AACTGAAAATTTCATGTTGGCTTTT 57.371 28.000 9.02 0.00 39.30 2.27
1286 1318 7.986889 AGTAACTGAAAATTTCATGTTGGCTTT 59.013 29.630 21.99 7.75 39.30 3.51
1287 1319 7.500141 AGTAACTGAAAATTTCATGTTGGCTT 58.500 30.769 21.99 8.21 39.30 4.35
1288 1320 7.054491 AGTAACTGAAAATTTCATGTTGGCT 57.946 32.000 21.99 18.24 39.30 4.75
1289 1321 7.437862 TGAAGTAACTGAAAATTTCATGTTGGC 59.562 33.333 21.99 17.10 39.30 4.52
1290 1322 8.755018 GTGAAGTAACTGAAAATTTCATGTTGG 58.245 33.333 21.99 10.39 39.30 3.77
1291 1323 9.520204 AGTGAAGTAACTGAAAATTTCATGTTG 57.480 29.630 21.99 10.67 39.30 3.33
1295 1327 9.899226 GCTTAGTGAAGTAACTGAAAATTTCAT 57.101 29.630 9.02 0.00 35.59 2.57
1296 1328 9.120538 AGCTTAGTGAAGTAACTGAAAATTTCA 57.879 29.630 8.25 8.25 35.18 2.69
1297 1329 9.952188 AAGCTTAGTGAAGTAACTGAAAATTTC 57.048 29.630 0.00 0.00 34.90 2.17
1298 1330 9.736023 CAAGCTTAGTGAAGTAACTGAAAATTT 57.264 29.630 0.00 0.00 34.90 1.82
1299 1331 8.903820 ACAAGCTTAGTGAAGTAACTGAAAATT 58.096 29.630 0.00 0.00 34.90 1.82
1300 1332 8.451908 ACAAGCTTAGTGAAGTAACTGAAAAT 57.548 30.769 0.00 0.00 34.90 1.82
1301 1333 7.859325 ACAAGCTTAGTGAAGTAACTGAAAA 57.141 32.000 0.00 0.00 34.90 2.29
1302 1334 9.204570 GATACAAGCTTAGTGAAGTAACTGAAA 57.795 33.333 0.00 0.00 34.90 2.69
1303 1335 8.585881 AGATACAAGCTTAGTGAAGTAACTGAA 58.414 33.333 0.00 0.00 34.90 3.02
1304 1336 8.123639 AGATACAAGCTTAGTGAAGTAACTGA 57.876 34.615 0.00 0.00 34.90 3.41
1305 1337 9.856488 TTAGATACAAGCTTAGTGAAGTAACTG 57.144 33.333 0.00 0.00 34.90 3.16
1312 1344 9.330063 CCATTGATTAGATACAAGCTTAGTGAA 57.670 33.333 0.00 0.00 0.00 3.18
1313 1345 7.933577 CCCATTGATTAGATACAAGCTTAGTGA 59.066 37.037 0.00 0.00 0.00 3.41
1330 1362 9.496710 ACAATCCATATATATTGCCCATTGATT 57.503 29.630 7.76 0.00 36.72 2.57
1355 1393 6.261381 TCCTGTTCGCCATTAATTACCATTAC 59.739 38.462 0.00 0.00 0.00 1.89
1357 1395 5.197451 TCCTGTTCGCCATTAATTACCATT 58.803 37.500 0.00 0.00 0.00 3.16
1358 1396 4.787551 TCCTGTTCGCCATTAATTACCAT 58.212 39.130 0.00 0.00 0.00 3.55
1359 1397 4.196193 CTCCTGTTCGCCATTAATTACCA 58.804 43.478 0.00 0.00 0.00 3.25
1360 1398 3.003378 GCTCCTGTTCGCCATTAATTACC 59.997 47.826 0.00 0.00 0.00 2.85
1364 1402 2.017049 GTGCTCCTGTTCGCCATTAAT 58.983 47.619 0.00 0.00 0.00 1.40
1373 1411 2.743928 CAGGCCGTGCTCCTGTTC 60.744 66.667 0.00 0.00 44.62 3.18
1400 1438 2.661537 CGCAGCTGTTCGTCACCA 60.662 61.111 16.64 0.00 0.00 4.17
1412 1450 2.357517 ACACAGTGTAGCCGCAGC 60.358 61.111 3.69 0.00 40.32 5.25
1434 1472 2.892425 GCGTTGGAGAGGATGCCG 60.892 66.667 0.00 0.00 0.00 5.69
1476 1514 1.699054 CCGGGGAGAGCATGAATCCA 61.699 60.000 11.87 0.00 34.62 3.41
1479 1517 3.125376 GCCCGGGGAGAGCATGAAT 62.125 63.158 25.28 0.00 0.00 2.57
1562 1600 3.710722 CGCCAGAGGAGCCCTGTT 61.711 66.667 0.00 0.00 31.76 3.16
2080 2169 2.226437 GAGCACGTCCAACAACAATGAT 59.774 45.455 0.00 0.00 0.00 2.45
2088 2177 4.228567 TGCCGAGCACGTCCAACA 62.229 61.111 2.18 0.00 37.88 3.33
2115 2218 3.876914 AGAAGCGATCGAAATGCCAAATA 59.123 39.130 21.57 0.00 0.00 1.40
2142 2247 4.088762 CCACATGCGCACGTCCAC 62.089 66.667 14.90 0.00 0.00 4.02
2183 2291 8.483307 AACCGTAATATAATTCGTGTCAAGTT 57.517 30.769 0.00 0.00 0.00 2.66
2184 2292 9.585099 TTAACCGTAATATAATTCGTGTCAAGT 57.415 29.630 0.00 0.00 0.00 3.16
2333 3577 1.957113 GCTTTCCATGGAGAGTTGGGG 60.957 57.143 27.98 8.13 33.62 4.96
2450 3734 9.708092 ACTCCCTTCGTAAAGAAATATAATAGC 57.292 33.333 0.00 0.00 38.57 2.97
2466 3750 6.244654 AGAGTTTAGTTACTACTCCCTTCGT 58.755 40.000 10.63 0.00 39.23 3.85
2467 3751 6.183360 GGAGAGTTTAGTTACTACTCCCTTCG 60.183 46.154 12.94 0.00 39.23 3.79
2473 3757 6.864342 TGCATGGAGAGTTTAGTTACTACTC 58.136 40.000 7.09 7.09 38.82 2.59
2492 3776 9.941664 CTAAAAGAAGTTAATCACCTATGCATG 57.058 33.333 10.16 0.00 0.00 4.06
2540 3825 8.486210 TCTATTATGCATGGAGAGTTTAGTTGT 58.514 33.333 10.16 0.00 0.00 3.32
2566 3852 9.474920 CCAAACATGTGAAACTATACAAAATGT 57.525 29.630 0.00 0.00 38.04 2.71
2574 3860 7.093988 CCAATCACCCAAACATGTGAAACTATA 60.094 37.037 0.00 0.00 38.04 1.31
2659 3954 9.799106 CTGTCCAGTATGAATCCCTATTTATTT 57.201 33.333 0.00 0.00 39.69 1.40
2660 3955 8.386264 CCTGTCCAGTATGAATCCCTATTTATT 58.614 37.037 0.00 0.00 39.69 1.40
2661 3956 7.529560 GCCTGTCCAGTATGAATCCCTATTTAT 60.530 40.741 0.00 0.00 39.69 1.40
2664 3959 4.042187 GCCTGTCCAGTATGAATCCCTATT 59.958 45.833 0.00 0.00 39.69 1.73
2674 3969 4.687948 CGAATAGATTGCCTGTCCAGTATG 59.312 45.833 0.00 0.00 0.00 2.39
2679 3974 2.483714 GCTCGAATAGATTGCCTGTCCA 60.484 50.000 0.00 0.00 0.00 4.02
2682 3977 2.831333 CTGCTCGAATAGATTGCCTGT 58.169 47.619 0.00 0.00 0.00 4.00
2683 3978 1.530293 GCTGCTCGAATAGATTGCCTG 59.470 52.381 0.00 0.00 0.00 4.85
2684 3979 1.139654 TGCTGCTCGAATAGATTGCCT 59.860 47.619 0.00 0.00 0.00 4.75
2685 3980 1.586422 TGCTGCTCGAATAGATTGCC 58.414 50.000 0.00 0.00 0.00 4.52
3082 4582 1.893786 CCCAGTCGAGGAGGAACTG 59.106 63.158 0.00 0.00 41.55 3.16
3084 4584 2.232298 CTGCCCAGTCGAGGAGGAAC 62.232 65.000 0.00 0.00 0.00 3.62
3085 4585 1.984570 CTGCCCAGTCGAGGAGGAA 60.985 63.158 0.00 0.00 0.00 3.36
3086 4586 2.363018 CTGCCCAGTCGAGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
3087 4587 2.681778 ACTGCCCAGTCGAGGAGG 60.682 66.667 0.00 0.00 36.92 4.30
3088 4588 2.575993 CACTGCCCAGTCGAGGAG 59.424 66.667 0.00 0.00 40.20 3.69
3089 4589 2.997315 CCACTGCCCAGTCGAGGA 60.997 66.667 0.00 0.00 40.20 3.71
3090 4590 4.767255 GCCACTGCCCAGTCGAGG 62.767 72.222 0.00 0.00 40.20 4.63
3091 4591 3.320879 ATGCCACTGCCCAGTCGAG 62.321 63.158 0.00 0.00 40.20 4.04
3092 4592 3.321648 ATGCCACTGCCCAGTCGA 61.322 61.111 0.00 0.00 40.20 4.20
3093 4593 3.129502 CATGCCACTGCCCAGTCG 61.130 66.667 0.00 0.00 40.20 4.18
3094 4594 2.753043 CCATGCCACTGCCCAGTC 60.753 66.667 0.00 0.00 40.20 3.51
3095 4595 2.661574 AAACCATGCCACTGCCCAGT 62.662 55.000 0.00 0.00 43.61 4.00
3096 4596 1.880819 GAAACCATGCCACTGCCCAG 61.881 60.000 0.00 0.00 36.33 4.45
3097 4597 1.907807 GAAACCATGCCACTGCCCA 60.908 57.895 0.00 0.00 36.33 5.36
3220 4720 1.658994 AGACTCTCTCTAGGTTCGCG 58.341 55.000 0.00 0.00 0.00 5.87
3434 4938 5.351465 TCATCGTAGCAAAATCTTGGTTCTC 59.649 40.000 0.00 0.00 40.34 2.87
3440 4944 5.122239 TCTGGTTCATCGTAGCAAAATCTTG 59.878 40.000 0.00 0.00 35.49 3.02
3442 4946 4.832248 TCTGGTTCATCGTAGCAAAATCT 58.168 39.130 0.00 0.00 0.00 2.40
3443 4947 4.870426 TCTCTGGTTCATCGTAGCAAAATC 59.130 41.667 0.00 0.00 0.00 2.17
3444 4948 4.832248 TCTCTGGTTCATCGTAGCAAAAT 58.168 39.130 0.00 0.00 0.00 1.82
3495 5002 4.216411 TCCCTTTTATGTGTCTACCTGC 57.784 45.455 0.00 0.00 0.00 4.85
3496 5003 5.823045 GGAATCCCTTTTATGTGTCTACCTG 59.177 44.000 0.00 0.00 0.00 4.00
3497 5004 5.491078 TGGAATCCCTTTTATGTGTCTACCT 59.509 40.000 0.00 0.00 0.00 3.08
3498 5005 5.751586 TGGAATCCCTTTTATGTGTCTACC 58.248 41.667 0.00 0.00 0.00 3.18
3499 5006 7.881775 AATGGAATCCCTTTTATGTGTCTAC 57.118 36.000 0.00 0.00 0.00 2.59
3502 5009 6.935167 ACAAATGGAATCCCTTTTATGTGTC 58.065 36.000 0.00 0.00 37.61 3.67
3503 5010 6.933514 ACAAATGGAATCCCTTTTATGTGT 57.066 33.333 0.00 0.00 37.61 3.72
3504 5011 8.190784 GTCTACAAATGGAATCCCTTTTATGTG 58.809 37.037 0.00 0.00 37.61 3.21
3505 5012 7.893302 TGTCTACAAATGGAATCCCTTTTATGT 59.107 33.333 0.00 0.00 37.61 2.29
3506 5013 8.190784 GTGTCTACAAATGGAATCCCTTTTATG 58.809 37.037 0.00 0.00 37.61 1.90
3507 5014 7.342026 GGTGTCTACAAATGGAATCCCTTTTAT 59.658 37.037 0.00 0.00 37.61 1.40
3508 5015 6.661805 GGTGTCTACAAATGGAATCCCTTTTA 59.338 38.462 0.00 0.00 37.61 1.52
3509 5016 5.480422 GGTGTCTACAAATGGAATCCCTTTT 59.520 40.000 0.00 0.00 39.53 2.27
3510 5017 5.016831 GGTGTCTACAAATGGAATCCCTTT 58.983 41.667 0.00 0.00 0.00 3.11
3511 5018 4.044065 TGGTGTCTACAAATGGAATCCCTT 59.956 41.667 0.00 0.00 0.00 3.95
3512 5019 3.591527 TGGTGTCTACAAATGGAATCCCT 59.408 43.478 0.00 0.00 0.00 4.20
3513 5020 3.963129 TGGTGTCTACAAATGGAATCCC 58.037 45.455 0.00 0.00 0.00 3.85
3620 5127 3.279434 ACCAATCCTTTTCGCATCTACC 58.721 45.455 0.00 0.00 0.00 3.18
3725 5232 5.469479 ACATTGAAAGCAGAATTTTACCGG 58.531 37.500 0.00 0.00 0.00 5.28
3726 5233 6.381801 AGACATTGAAAGCAGAATTTTACCG 58.618 36.000 0.00 0.00 0.00 4.02
3738 5245 4.036144 GGGCAGAATAGAGACATTGAAAGC 59.964 45.833 0.00 0.00 0.00 3.51
3739 5246 4.272018 CGGGCAGAATAGAGACATTGAAAG 59.728 45.833 0.00 0.00 0.00 2.62
3740 5247 4.191544 CGGGCAGAATAGAGACATTGAAA 58.808 43.478 0.00 0.00 0.00 2.69
3746 5253 3.958147 TGATTACGGGCAGAATAGAGACA 59.042 43.478 0.00 0.00 0.00 3.41
3748 5255 4.220821 GGATGATTACGGGCAGAATAGAGA 59.779 45.833 0.00 0.00 0.00 3.10
3751 5258 4.021104 TGAGGATGATTACGGGCAGAATAG 60.021 45.833 0.00 0.00 0.00 1.73
3757 5264 0.468226 GGTGAGGATGATTACGGGCA 59.532 55.000 0.00 0.00 0.00 5.36
3761 5268 2.485479 CCTTGGGGTGAGGATGATTACG 60.485 54.545 0.00 0.00 36.33 3.18
3780 5287 0.250640 CAAGGCTCACAGAAGCACCT 60.251 55.000 0.00 0.00 44.35 4.00
3781 5288 1.239968 CCAAGGCTCACAGAAGCACC 61.240 60.000 0.00 0.00 44.35 5.01
3782 5289 0.536006 ACCAAGGCTCACAGAAGCAC 60.536 55.000 0.00 0.00 44.35 4.40
3804 5311 3.999001 CTGTTCTTGAGCAGCTGACAATA 59.001 43.478 20.43 12.26 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.