Multiple sequence alignment - TraesCS7D01G517100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G517100 chr7D 100.000 4292 0 0 1 4292 616218269 616222560 0.000000e+00 7926.0
1 TraesCS7D01G517100 chr7D 91.436 1518 102 8 1627 3137 616257599 616256103 0.000000e+00 2058.0
2 TraesCS7D01G517100 chr7D 81.104 1503 242 24 1877 3372 616276222 616274755 0.000000e+00 1164.0
3 TraesCS7D01G517100 chr7D 81.275 1474 225 24 1844 3303 617027978 617029414 0.000000e+00 1146.0
4 TraesCS7D01G517100 chr7D 87.592 951 63 25 3203 4131 616256086 616255169 0.000000e+00 1051.0
5 TraesCS7D01G517100 chr7D 79.861 1440 243 33 1951 3372 616331549 616330139 0.000000e+00 1009.0
6 TraesCS7D01G517100 chr7D 89.069 677 33 12 930 1595 616258246 616257600 0.000000e+00 802.0
7 TraesCS7D01G517100 chr7D 84.024 820 105 18 1 815 616259069 616258271 0.000000e+00 765.0
8 TraesCS7D01G517100 chr7D 82.026 306 33 7 354 638 224059328 224059024 1.540000e-59 241.0
9 TraesCS7D01G517100 chr7D 81.560 141 13 8 4154 4292 616254961 616254832 2.110000e-18 104.0
10 TraesCS7D01G517100 chr7D 81.890 127 14 4 1164 1281 616333738 616333612 9.820000e-17 99.0
11 TraesCS7D01G517100 chr7A 93.035 2613 121 21 1550 4160 709265796 709263243 0.000000e+00 3760.0
12 TraesCS7D01G517100 chr7A 81.394 1521 236 31 1865 3373 709285518 709284033 0.000000e+00 1197.0
13 TraesCS7D01G517100 chr7A 81.149 1549 237 27 1844 3372 709755449 709756962 0.000000e+00 1192.0
14 TraesCS7D01G517100 chr7A 86.043 609 38 23 899 1496 709266337 709265765 1.020000e-170 610.0
15 TraesCS7D01G517100 chr7A 88.000 350 27 3 959 1308 709286253 709285919 2.400000e-107 399.0
16 TraesCS7D01G517100 chr7A 90.071 282 28 0 1516 1797 709285816 709285535 2.440000e-97 366.0
17 TraesCS7D01G517100 chr7A 78.615 491 94 9 1644 2126 709788133 709788620 8.960000e-82 315.0
18 TraesCS7D01G517100 chr7A 81.046 306 36 8 354 638 237515757 237516061 1.550000e-54 224.0
19 TraesCS7D01G517100 chr7A 96.739 92 3 0 4156 4247 709263098 709263007 2.070000e-33 154.0
20 TraesCS7D01G517100 chr7A 92.982 57 4 0 219 275 83802579 83802523 2.750000e-12 84.2
21 TraesCS7D01G517100 chr7B 81.511 1509 226 31 1878 3372 709591701 709590232 0.000000e+00 1192.0
22 TraesCS7D01G517100 chr7B 80.503 1431 222 24 1885 3311 709530403 709529026 0.000000e+00 1044.0
23 TraesCS7D01G517100 chr7B 87.513 929 66 18 887 1797 709531336 709530440 0.000000e+00 1027.0
24 TraesCS7D01G517100 chr7B 79.037 997 165 25 2153 3139 711205584 711206546 1.010000e-180 643.0
25 TraesCS7D01G517100 chr7B 84.655 391 19 11 913 1298 709516870 709516516 6.830000e-93 351.0
26 TraesCS7D01G517100 chr7B 84.950 299 13 8 1330 1613 709515949 709515668 1.520000e-69 274.0
27 TraesCS7D01G517100 chr7B 82.353 306 32 8 354 638 173868721 173868417 3.310000e-61 246.0
28 TraesCS7D01G517100 chr7B 79.560 318 45 10 1534 1837 709592014 709591703 4.350000e-50 209.0
29 TraesCS7D01G517100 chr1D 80.935 1390 192 36 1877 3256 408626178 408627504 0.000000e+00 1031.0
30 TraesCS7D01G517100 chr1D 80.074 271 47 4 1570 1834 408625905 408626174 1.220000e-45 195.0
31 TraesCS7D01G517100 chr1D 83.750 160 16 5 1164 1315 408625455 408625612 4.470000e-30 143.0
32 TraesCS7D01G517100 chr1B 76.584 1499 290 30 1875 3359 677254878 677256329 0.000000e+00 767.0
33 TraesCS7D01G517100 chr6B 80.371 647 86 18 113 734 76484146 76484776 1.820000e-123 453.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G517100 chr7D 616218269 616222560 4291 False 7926.000000 7926 100.000000 1 4292 1 chr7D.!!$F1 4291
1 TraesCS7D01G517100 chr7D 616274755 616276222 1467 True 1164.000000 1164 81.104000 1877 3372 1 chr7D.!!$R2 1495
2 TraesCS7D01G517100 chr7D 617027978 617029414 1436 False 1146.000000 1146 81.275000 1844 3303 1 chr7D.!!$F2 1459
3 TraesCS7D01G517100 chr7D 616254832 616259069 4237 True 956.000000 2058 86.736200 1 4292 5 chr7D.!!$R3 4291
4 TraesCS7D01G517100 chr7D 616330139 616333738 3599 True 554.000000 1009 80.875500 1164 3372 2 chr7D.!!$R4 2208
5 TraesCS7D01G517100 chr7A 709263007 709266337 3330 True 1508.000000 3760 91.939000 899 4247 3 chr7A.!!$R2 3348
6 TraesCS7D01G517100 chr7A 709755449 709756962 1513 False 1192.000000 1192 81.149000 1844 3372 1 chr7A.!!$F2 1528
7 TraesCS7D01G517100 chr7A 709284033 709286253 2220 True 654.000000 1197 86.488333 959 3373 3 chr7A.!!$R3 2414
8 TraesCS7D01G517100 chr7B 709529026 709531336 2310 True 1035.500000 1044 84.008000 887 3311 2 chr7B.!!$R3 2424
9 TraesCS7D01G517100 chr7B 709590232 709592014 1782 True 700.500000 1192 80.535500 1534 3372 2 chr7B.!!$R4 1838
10 TraesCS7D01G517100 chr7B 711205584 711206546 962 False 643.000000 643 79.037000 2153 3139 1 chr7B.!!$F1 986
11 TraesCS7D01G517100 chr7B 709515668 709516870 1202 True 312.500000 351 84.802500 913 1613 2 chr7B.!!$R2 700
12 TraesCS7D01G517100 chr1D 408625455 408627504 2049 False 456.333333 1031 81.586333 1164 3256 3 chr1D.!!$F1 2092
13 TraesCS7D01G517100 chr1B 677254878 677256329 1451 False 767.000000 767 76.584000 1875 3359 1 chr1B.!!$F1 1484
14 TraesCS7D01G517100 chr6B 76484146 76484776 630 False 453.000000 453 80.371000 113 734 1 chr6B.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 365 0.667487 AACACTGACGACGCCATCAG 60.667 55.0 11.24 11.24 46.49 2.90 F
1067 1105 0.179089 GATCGACAGGTGAGCAGCAT 60.179 55.0 0.00 0.00 0.00 3.79 F
1767 2545 0.108615 AACGCTCTGGAGATTCCACG 60.109 55.0 1.35 5.41 42.67 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1220 1269 2.430367 GAGGCCGTGGTGGTTCTT 59.570 61.111 0.00 0.0 41.21 2.52 R
2366 4596 1.338107 TCACAACCATCTGGACGTCT 58.662 50.000 16.46 0.0 38.94 4.18 R
3426 5715 0.250727 GGGCAAAGCAGGTAGACACA 60.251 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.039216 TCTTGTAAAATGGCTCGTCCCA 59.961 45.455 0.00 0.00 39.65 4.37
101 102 3.319220 TGTATATTTCGTCCCCCATCCA 58.681 45.455 0.00 0.00 0.00 3.41
110 111 2.424234 CGTCCCCCATCCACCATATTTT 60.424 50.000 0.00 0.00 0.00 1.82
134 135 9.649316 TTTTAGGATTTCTCCCTCTTTTTACAA 57.351 29.630 0.00 0.00 43.21 2.41
135 136 9.822727 TTTAGGATTTCTCCCTCTTTTTACAAT 57.177 29.630 0.00 0.00 43.21 2.71
145 146 7.928873 TCCCTCTTTTTACAATGTCCTCTATT 58.071 34.615 0.00 0.00 0.00 1.73
150 151 9.793259 TCTTTTTACAATGTCCTCTATTCTTGT 57.207 29.630 0.00 0.00 0.00 3.16
169 170 3.295093 TGTTGGGAGTGAAATTTCAGCA 58.705 40.909 21.05 4.58 37.98 4.41
175 176 3.319122 GGAGTGAAATTTCAGCACCAACT 59.681 43.478 21.05 12.34 37.98 3.16
211 212 2.125912 CGCTGCCACTAAGCTCGT 60.126 61.111 0.00 0.00 38.57 4.18
216 217 1.671054 GCCACTAAGCTCGTTGCCA 60.671 57.895 0.00 0.00 44.23 4.92
217 218 1.026718 GCCACTAAGCTCGTTGCCAT 61.027 55.000 0.00 0.00 44.23 4.40
238 239 3.382832 ACCGTTGCTCCTCCCTCG 61.383 66.667 0.00 0.00 0.00 4.63
240 241 3.068691 CGTTGCTCCTCCCTCGGA 61.069 66.667 0.00 0.00 0.00 4.55
296 297 3.296054 ATCCGATCCCGAGGTCGC 61.296 66.667 0.00 0.00 38.22 5.19
364 365 0.667487 AACACTGACGACGCCATCAG 60.667 55.000 11.24 11.24 46.49 2.90
366 367 1.977009 ACTGACGACGCCATCAGGA 60.977 57.895 15.74 0.00 45.55 3.86
367 368 1.517257 CTGACGACGCCATCAGGAC 60.517 63.158 6.15 0.00 38.97 3.85
368 369 2.212900 CTGACGACGCCATCAGGACA 62.213 60.000 6.15 0.00 38.97 4.02
369 370 1.141881 GACGACGCCATCAGGACAT 59.858 57.895 0.00 0.00 36.89 3.06
370 371 1.148157 GACGACGCCATCAGGACATG 61.148 60.000 0.00 0.00 36.89 3.21
373 386 2.203252 CGCCATCAGGACATGGGG 60.203 66.667 0.00 2.48 46.92 4.96
392 405 2.675423 CGTGGGGAGACGAGGTCA 60.675 66.667 0.00 0.00 42.10 4.02
412 425 3.636231 CGGAGGGTGGACAAGGCA 61.636 66.667 0.00 0.00 0.00 4.75
429 442 2.852075 AGTCGGGTTCCTTGGCCA 60.852 61.111 0.00 0.00 0.00 5.36
499 512 2.713770 GCGCCGTCTACGAGATGA 59.286 61.111 3.65 0.00 43.02 2.92
503 516 0.739561 GCCGTCTACGAGATGAAGGT 59.260 55.000 3.65 0.00 43.02 3.50
504 517 1.268640 GCCGTCTACGAGATGAAGGTC 60.269 57.143 3.65 0.00 43.02 3.85
505 518 2.014857 CCGTCTACGAGATGAAGGTCA 58.985 52.381 3.65 0.00 43.02 4.02
513 526 2.034685 CGAGATGAAGGTCAAGGCGATA 59.965 50.000 0.00 0.00 0.00 2.92
527 540 2.029221 GATACGCTTCGAGGGCCC 59.971 66.667 16.46 16.46 0.00 5.80
528 541 2.762459 ATACGCTTCGAGGGCCCA 60.762 61.111 27.56 0.00 0.00 5.36
578 591 3.764466 CTTCGAGGCGGTCCTGCT 61.764 66.667 5.82 0.00 44.46 4.24
627 640 4.368391 GCCATGGGCGACATAGAG 57.632 61.111 15.13 0.00 39.62 2.43
641 654 4.022762 CGACATAGAGGAGTATGAACCCAG 60.023 50.000 0.00 0.00 34.88 4.45
680 693 4.310769 TGTTTTCAGGGTGTTTTGTGTTG 58.689 39.130 0.00 0.00 0.00 3.33
681 694 2.663826 TTCAGGGTGTTTTGTGTTGC 57.336 45.000 0.00 0.00 0.00 4.17
682 695 1.846007 TCAGGGTGTTTTGTGTTGCT 58.154 45.000 0.00 0.00 0.00 3.91
686 699 3.370672 CAGGGTGTTTTGTGTTGCTTTTC 59.629 43.478 0.00 0.00 0.00 2.29
690 703 3.370672 GTGTTTTGTGTTGCTTTTCAGGG 59.629 43.478 0.00 0.00 0.00 4.45
692 705 3.518634 TTTGTGTTGCTTTTCAGGGAC 57.481 42.857 0.00 0.00 0.00 4.46
696 709 0.961753 GTTGCTTTTCAGGGACCTGG 59.038 55.000 17.75 3.50 43.75 4.45
699 712 0.961753 GCTTTTCAGGGACCTGGTTG 59.038 55.000 17.75 7.61 43.75 3.77
712 725 7.449086 CAGGGACCTGGTTGTAAATTTAACTAA 59.551 37.037 10.55 0.00 40.17 2.24
713 726 8.174757 AGGGACCTGGTTGTAAATTTAACTAAT 58.825 33.333 0.00 0.00 0.00 1.73
714 727 8.248253 GGGACCTGGTTGTAAATTTAACTAATG 58.752 37.037 0.00 0.00 0.00 1.90
734 747 3.708451 TGACAAGTGGGCTCTACATCTA 58.292 45.455 0.00 0.00 0.00 1.98
735 748 4.290093 TGACAAGTGGGCTCTACATCTAT 58.710 43.478 0.00 0.00 0.00 1.98
744 757 5.604231 TGGGCTCTACATCTATCATGAAAGT 59.396 40.000 0.00 0.00 0.00 2.66
775 788 8.902806 TGCGGAATCTATTCTATCAAAACAAAT 58.097 29.630 2.91 0.00 37.00 2.32
819 832 8.798402 TGAAAAATATATTTTAGGGTATGCCGG 58.202 33.333 20.90 0.00 38.92 6.13
820 833 8.715190 AAAAATATATTTTAGGGTATGCCGGT 57.285 30.769 20.90 1.44 38.92 5.28
822 835 8.797350 AAATATATTTTAGGGTATGCCGGTAC 57.203 34.615 1.90 0.00 34.97 3.34
840 853 5.908916 GGTACGAGATTTTAAGGATCTGC 57.091 43.478 7.83 0.00 34.13 4.26
841 854 5.602628 GGTACGAGATTTTAAGGATCTGCT 58.397 41.667 7.83 0.00 34.13 4.24
842 855 6.746120 GGTACGAGATTTTAAGGATCTGCTA 58.254 40.000 7.83 0.00 34.13 3.49
843 856 6.864165 GGTACGAGATTTTAAGGATCTGCTAG 59.136 42.308 7.83 0.00 34.13 3.42
844 857 6.716934 ACGAGATTTTAAGGATCTGCTAGA 57.283 37.500 7.83 0.00 34.13 2.43
845 858 7.296628 ACGAGATTTTAAGGATCTGCTAGAT 57.703 36.000 7.83 0.00 37.73 1.98
846 859 7.151308 ACGAGATTTTAAGGATCTGCTAGATG 58.849 38.462 7.83 0.00 34.53 2.90
847 860 6.090628 CGAGATTTTAAGGATCTGCTAGATGC 59.909 42.308 7.83 8.80 42.55 3.91
855 868 5.467035 GGATCTGCTAGATGCTCTAAACT 57.533 43.478 0.00 0.00 39.60 2.66
856 869 5.229423 GGATCTGCTAGATGCTCTAAACTG 58.771 45.833 0.00 0.00 39.60 3.16
857 870 5.010516 GGATCTGCTAGATGCTCTAAACTGA 59.989 44.000 0.00 0.00 39.60 3.41
858 871 5.921962 TCTGCTAGATGCTCTAAACTGAA 57.078 39.130 0.00 0.00 43.37 3.02
859 872 5.900425 TCTGCTAGATGCTCTAAACTGAAG 58.100 41.667 0.00 0.00 43.37 3.02
860 873 5.016051 TGCTAGATGCTCTAAACTGAAGG 57.984 43.478 0.00 0.00 43.37 3.46
861 874 3.807071 GCTAGATGCTCTAAACTGAAGGC 59.193 47.826 0.00 0.00 38.95 4.35
862 875 3.988976 AGATGCTCTAAACTGAAGGCA 57.011 42.857 0.00 0.00 0.00 4.75
863 876 3.604582 AGATGCTCTAAACTGAAGGCAC 58.395 45.455 0.00 0.00 32.52 5.01
864 877 2.928801 TGCTCTAAACTGAAGGCACA 57.071 45.000 0.00 0.00 0.00 4.57
865 878 2.771089 TGCTCTAAACTGAAGGCACAG 58.229 47.619 9.52 9.52 42.78 3.66
866 879 2.368548 TGCTCTAAACTGAAGGCACAGA 59.631 45.455 16.25 0.00 40.63 3.41
867 880 2.999355 GCTCTAAACTGAAGGCACAGAG 59.001 50.000 16.25 5.88 40.63 3.35
868 881 3.556004 GCTCTAAACTGAAGGCACAGAGT 60.556 47.826 16.25 7.56 40.63 3.24
869 882 4.636249 CTCTAAACTGAAGGCACAGAGTT 58.364 43.478 16.25 12.05 40.63 3.01
870 883 5.036117 TCTAAACTGAAGGCACAGAGTTT 57.964 39.130 16.25 12.05 40.63 2.66
871 884 5.437060 TCTAAACTGAAGGCACAGAGTTTT 58.563 37.500 16.25 9.93 40.63 2.43
872 885 5.885912 TCTAAACTGAAGGCACAGAGTTTTT 59.114 36.000 16.25 9.67 40.63 1.94
1036 1065 0.902516 AGACGAAGCAGCTCCTCCTT 60.903 55.000 0.00 0.00 0.00 3.36
1065 1103 0.805322 CAGATCGACAGGTGAGCAGC 60.805 60.000 0.00 0.00 0.00 5.25
1066 1104 1.216444 GATCGACAGGTGAGCAGCA 59.784 57.895 0.00 0.00 0.00 4.41
1067 1105 0.179089 GATCGACAGGTGAGCAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
1068 1106 0.251354 ATCGACAGGTGAGCAGCATT 59.749 50.000 0.00 0.00 0.00 3.56
1069 1107 0.894835 TCGACAGGTGAGCAGCATTA 59.105 50.000 0.00 0.00 0.00 1.90
1070 1108 1.482182 TCGACAGGTGAGCAGCATTAT 59.518 47.619 0.00 0.00 0.00 1.28
1071 1109 1.863454 CGACAGGTGAGCAGCATTATC 59.137 52.381 0.00 0.00 0.00 1.75
1072 1110 2.482664 CGACAGGTGAGCAGCATTATCT 60.483 50.000 0.00 0.00 0.00 1.98
1117 1157 1.102978 GTTTTCCCGGTGGATGGATG 58.897 55.000 0.00 0.00 41.40 3.51
1160 1200 5.975939 CGTTTCTCTATTAACCTAGGGTTCG 59.024 44.000 14.81 0.00 43.05 3.95
1293 1353 2.484065 CGGCGGTAACTTCCATTCCATA 60.484 50.000 0.00 0.00 0.00 2.74
1403 2121 1.609072 GGGCTTCAACTCTTGTTCACC 59.391 52.381 0.00 0.00 33.52 4.02
1609 2375 2.689471 TGCACTTTGAGCTCATTGTGTT 59.311 40.909 31.75 11.30 34.35 3.32
1625 2397 7.867752 TCATTGTGTTAGCCAGTTACTTTTAC 58.132 34.615 0.00 0.00 0.00 2.01
1767 2545 0.108615 AACGCTCTGGAGATTCCACG 60.109 55.000 1.35 5.41 42.67 4.94
1789 2567 3.181500 GGCGACCTATGTTTCAATGAACC 60.181 47.826 0.00 0.00 0.00 3.62
1792 2570 4.007659 GACCTATGTTTCAATGAACCCGT 58.992 43.478 0.00 0.00 0.00 5.28
1821 2599 5.006746 GTGGATTCTAACACCGATGACAATC 59.993 44.000 0.00 0.00 0.00 2.67
2158 4379 2.811317 CTTGTCTCTCGCCGGTGC 60.811 66.667 11.05 0.00 0.00 5.01
2196 4417 3.466836 TCAGGAATATGCCGCTTTACAG 58.533 45.455 0.00 0.00 0.00 2.74
2216 4437 5.925509 ACAGTACTCAGAAGGCTTGTTTTA 58.074 37.500 3.46 0.00 0.00 1.52
2348 4569 7.486551 CCACACAAACTCGATAAACTTCAAAAA 59.513 33.333 0.00 0.00 0.00 1.94
2366 4596 6.747125 TCAAAAATTGCTGATTGCTAGAACA 58.253 32.000 0.00 0.00 43.37 3.18
2471 4701 4.406943 GTTGCTCAAAATTAGAGAAGGCG 58.593 43.478 10.99 0.00 35.09 5.52
2487 4717 2.080693 AGGCGACAATTGCGTTTGATA 58.919 42.857 18.73 0.00 0.00 2.15
2500 4730 4.873827 TGCGTTTGATACCACTAATCCTTC 59.126 41.667 0.00 0.00 0.00 3.46
2599 4832 7.116075 TCAACATATGCACAGGTTACCTTATT 58.884 34.615 0.00 0.00 0.00 1.40
2761 5000 8.128582 TGACTTGTCAAATTGTTGTCTATTGTC 58.871 33.333 0.44 0.00 36.07 3.18
2766 5011 7.095649 TGTCAAATTGTTGTCTATTGTCGAGAG 60.096 37.037 0.00 0.00 36.07 3.20
3151 5428 0.536006 ACCAAGGCTCACAGAAGCAC 60.536 55.000 0.00 0.00 44.35 4.40
3152 5429 1.239968 CCAAGGCTCACAGAAGCACC 61.240 60.000 0.00 0.00 44.35 5.01
3153 5430 0.250640 CAAGGCTCACAGAAGCACCT 60.251 55.000 0.00 0.00 44.35 4.00
3176 5456 0.468226 GGTGAGGATGATTACGGGCA 59.532 55.000 0.00 0.00 0.00 5.36
3182 5462 4.021104 TGAGGATGATTACGGGCAGAATAG 60.021 45.833 0.00 0.00 0.00 1.73
3187 5467 3.958147 TGATTACGGGCAGAATAGAGACA 59.042 43.478 0.00 0.00 0.00 3.41
3192 5472 3.197766 ACGGGCAGAATAGAGACATTGAA 59.802 43.478 0.00 0.00 0.00 2.69
3193 5473 4.191544 CGGGCAGAATAGAGACATTGAAA 58.808 43.478 0.00 0.00 0.00 2.69
3194 5474 4.272018 CGGGCAGAATAGAGACATTGAAAG 59.728 45.833 0.00 0.00 0.00 2.62
3420 5709 3.963129 TGGTGTCTACAAATGGAATCCC 58.037 45.455 0.00 0.00 0.00 3.85
3422 5711 4.044065 TGGTGTCTACAAATGGAATCCCTT 59.956 41.667 0.00 0.00 0.00 3.95
3423 5712 5.016831 GGTGTCTACAAATGGAATCCCTTT 58.983 41.667 0.00 0.00 0.00 3.11
3424 5713 5.480422 GGTGTCTACAAATGGAATCCCTTTT 59.520 40.000 0.00 0.00 39.53 2.27
3425 5714 6.661805 GGTGTCTACAAATGGAATCCCTTTTA 59.338 38.462 0.00 0.00 37.61 1.52
3426 5715 7.342026 GGTGTCTACAAATGGAATCCCTTTTAT 59.658 37.037 0.00 0.00 37.61 1.40
3427 5716 8.190784 GTGTCTACAAATGGAATCCCTTTTATG 58.809 37.037 0.00 0.00 37.61 1.90
3428 5717 7.893302 TGTCTACAAATGGAATCCCTTTTATGT 59.107 33.333 0.00 0.00 37.61 2.29
3429 5718 8.190784 GTCTACAAATGGAATCCCTTTTATGTG 58.809 37.037 0.00 0.00 37.61 3.21
3430 5719 6.933514 ACAAATGGAATCCCTTTTATGTGT 57.066 33.333 0.00 0.00 37.61 3.72
3431 5720 6.935167 ACAAATGGAATCCCTTTTATGTGTC 58.065 36.000 0.00 0.00 37.61 3.67
3432 5721 6.725834 ACAAATGGAATCCCTTTTATGTGTCT 59.274 34.615 0.00 0.00 37.61 3.41
3433 5722 7.893302 ACAAATGGAATCCCTTTTATGTGTCTA 59.107 33.333 0.00 0.00 37.61 2.59
3434 5723 7.881775 AATGGAATCCCTTTTATGTGTCTAC 57.118 36.000 0.00 0.00 0.00 2.59
3435 5724 5.751586 TGGAATCCCTTTTATGTGTCTACC 58.248 41.667 0.00 0.00 0.00 3.18
3436 5725 5.491078 TGGAATCCCTTTTATGTGTCTACCT 59.509 40.000 0.00 0.00 0.00 3.08
3437 5726 5.823045 GGAATCCCTTTTATGTGTCTACCTG 59.177 44.000 0.00 0.00 0.00 4.00
3438 5727 4.216411 TCCCTTTTATGTGTCTACCTGC 57.784 45.455 0.00 0.00 0.00 4.85
3489 5778 4.832248 TCTCTGGTTCATCGTAGCAAAAT 58.168 39.130 0.00 0.00 0.00 1.82
3490 5779 4.870426 TCTCTGGTTCATCGTAGCAAAATC 59.130 41.667 0.00 0.00 0.00 2.17
3491 5780 4.832248 TCTGGTTCATCGTAGCAAAATCT 58.168 39.130 0.00 0.00 0.00 2.40
3492 5781 5.245531 TCTGGTTCATCGTAGCAAAATCTT 58.754 37.500 0.00 0.00 0.00 2.40
3493 5782 5.122239 TCTGGTTCATCGTAGCAAAATCTTG 59.878 40.000 0.00 0.00 35.49 3.02
3499 5791 5.351465 TCATCGTAGCAAAATCTTGGTTCTC 59.649 40.000 0.00 0.00 40.34 2.87
3709 6005 7.696017 AGAAGAAGTAAGACTCTCTCTAGGTT 58.304 38.462 0.00 0.00 0.00 3.50
3837 6133 1.880819 GAAACCATGCCACTGCCCAG 61.881 60.000 0.00 0.00 36.33 4.45
3838 6134 2.661574 AAACCATGCCACTGCCCAGT 62.662 55.000 0.00 0.00 43.61 4.00
3839 6135 2.753043 CCATGCCACTGCCCAGTC 60.753 66.667 0.00 0.00 40.20 3.51
3840 6136 3.129502 CATGCCACTGCCCAGTCG 61.130 66.667 0.00 0.00 40.20 4.18
3841 6137 3.321648 ATGCCACTGCCCAGTCGA 61.322 61.111 0.00 0.00 40.20 4.20
3842 6138 3.320879 ATGCCACTGCCCAGTCGAG 62.321 63.158 0.00 0.00 40.20 4.04
3843 6139 4.767255 GCCACTGCCCAGTCGAGG 62.767 72.222 0.00 0.00 40.20 4.63
3844 6140 2.997315 CCACTGCCCAGTCGAGGA 60.997 66.667 0.00 0.00 40.20 3.71
3845 6141 2.575993 CACTGCCCAGTCGAGGAG 59.424 66.667 0.00 0.00 40.20 3.69
3846 6142 2.681778 ACTGCCCAGTCGAGGAGG 60.682 66.667 0.00 0.00 36.92 4.30
3847 6143 2.363018 CTGCCCAGTCGAGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
3848 6144 1.984570 CTGCCCAGTCGAGGAGGAA 60.985 63.158 0.00 0.00 0.00 3.36
3849 6145 2.232298 CTGCCCAGTCGAGGAGGAAC 62.232 65.000 0.00 0.00 0.00 3.62
3851 6147 1.893786 CCCAGTCGAGGAGGAACTG 59.106 63.158 0.00 0.00 41.55 3.16
4247 6748 3.064545 ACTTTGCTGCTCGAATAGATTGC 59.935 43.478 0.00 0.00 0.00 3.56
4249 6750 1.139654 TGCTGCTCGAATAGATTGCCT 59.860 47.619 0.00 0.00 0.00 4.75
4250 6751 1.530293 GCTGCTCGAATAGATTGCCTG 59.470 52.381 0.00 0.00 0.00 4.85
4251 6752 2.831333 CTGCTCGAATAGATTGCCTGT 58.169 47.619 0.00 0.00 0.00 4.00
4254 6755 2.483714 GCTCGAATAGATTGCCTGTCCA 60.484 50.000 0.00 0.00 0.00 4.02
4259 6760 4.687948 CGAATAGATTGCCTGTCCAGTATG 59.312 45.833 0.00 0.00 0.00 2.39
4269 6770 4.042187 GCCTGTCCAGTATGAATCCCTATT 59.958 45.833 0.00 0.00 39.69 1.73
4272 6773 7.529560 GCCTGTCCAGTATGAATCCCTATTTAT 60.530 40.741 0.00 0.00 39.69 1.40
4273 6774 8.386264 CCTGTCCAGTATGAATCCCTATTTATT 58.614 37.037 0.00 0.00 39.69 1.40
4274 6775 9.799106 CTGTCCAGTATGAATCCCTATTTATTT 57.201 33.333 0.00 0.00 39.69 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.751518 ACGAGCCATTTTACAAGACCTT 58.248 40.909 0.00 0.00 0.00 3.50
40 41 2.570415 TGGGACGAGCCATTTTACAA 57.430 45.000 0.00 0.00 38.95 2.41
48 49 6.017770 CGTAAAAATATTTATGGGACGAGCCA 60.018 38.462 0.01 0.00 35.34 4.75
89 90 0.771127 AATATGGTGGATGGGGGACG 59.229 55.000 0.00 0.00 0.00 4.79
90 91 3.328535 AAAATATGGTGGATGGGGGAC 57.671 47.619 0.00 0.00 0.00 4.46
91 92 4.140805 CCTAAAAATATGGTGGATGGGGGA 60.141 45.833 0.00 0.00 0.00 4.81
101 102 8.119062 AGAGGGAGAAATCCTAAAAATATGGT 57.881 34.615 0.00 0.00 34.21 3.55
110 111 9.243105 CATTGTAAAAAGAGGGAGAAATCCTAA 57.757 33.333 0.00 0.00 34.21 2.69
134 135 4.785376 ACTCCCAACAAGAATAGAGGACAT 59.215 41.667 0.00 0.00 0.00 3.06
135 136 4.020218 CACTCCCAACAAGAATAGAGGACA 60.020 45.833 0.00 0.00 0.00 4.02
145 146 4.037923 GCTGAAATTTCACTCCCAACAAGA 59.962 41.667 16.91 0.00 32.90 3.02
150 151 2.627699 GGTGCTGAAATTTCACTCCCAA 59.372 45.455 16.91 0.00 32.90 4.12
169 170 6.192970 AGGCATATAATAGAAGCAGTTGGT 57.807 37.500 0.00 0.00 0.00 3.67
175 176 3.515502 AGCGGAGGCATATAATAGAAGCA 59.484 43.478 0.00 0.00 43.41 3.91
181 182 1.905894 TGGCAGCGGAGGCATATAATA 59.094 47.619 0.00 0.00 43.41 0.98
182 183 0.692476 TGGCAGCGGAGGCATATAAT 59.308 50.000 0.00 0.00 43.41 1.28
185 186 1.121407 TAGTGGCAGCGGAGGCATAT 61.121 55.000 6.41 2.50 46.23 1.78
187 188 2.599645 CTTAGTGGCAGCGGAGGCAT 62.600 60.000 6.41 0.00 46.23 4.40
211 212 0.955428 GAGCAACGGTGAGATGGCAA 60.955 55.000 3.55 0.00 0.00 4.52
216 217 1.617947 GGGAGGAGCAACGGTGAGAT 61.618 60.000 3.55 0.00 0.00 2.75
217 218 2.283529 GGGAGGAGCAACGGTGAGA 61.284 63.158 3.55 0.00 0.00 3.27
392 405 1.995626 CCTTGTCCACCCTCCGGAT 60.996 63.158 3.57 0.00 34.32 4.18
407 420 1.073199 CAAGGAACCCGACTGCCTT 59.927 57.895 0.00 0.00 41.22 4.35
412 425 2.852075 TGGCCAAGGAACCCGACT 60.852 61.111 0.61 0.00 0.00 4.18
429 442 2.781158 GCGGCTTTGTTGGTGGTGT 61.781 57.895 0.00 0.00 0.00 4.16
481 494 2.642249 TTCATCTCGTAGACGGCGCG 62.642 60.000 6.90 0.00 40.29 6.86
489 502 2.796383 CGCCTTGACCTTCATCTCGTAG 60.796 54.545 0.00 0.00 0.00 3.51
541 554 2.688666 ATCCTGGAGGCCGAGCAA 60.689 61.111 1.52 0.00 34.44 3.91
547 560 0.757188 TCGAAGAGATCCTGGAGGCC 60.757 60.000 1.52 0.00 34.44 5.19
617 630 3.305471 GGGTTCATACTCCTCTATGTCGC 60.305 52.174 0.00 0.00 0.00 5.19
619 632 4.896482 ACTGGGTTCATACTCCTCTATGTC 59.104 45.833 0.00 0.00 0.00 3.06
623 636 4.684724 ACAACTGGGTTCATACTCCTCTA 58.315 43.478 0.00 0.00 0.00 2.43
627 640 7.608761 TGTAAATTACAACTGGGTTCATACTCC 59.391 37.037 2.97 0.00 35.38 3.85
657 670 4.608948 ACACAAAACACCCTGAAAACAA 57.391 36.364 0.00 0.00 0.00 2.83
658 671 4.310769 CAACACAAAACACCCTGAAAACA 58.689 39.130 0.00 0.00 0.00 2.83
680 693 0.961753 CAACCAGGTCCCTGAAAAGC 59.038 55.000 14.98 0.00 46.30 3.51
681 694 2.364972 ACAACCAGGTCCCTGAAAAG 57.635 50.000 14.98 0.58 46.30 2.27
682 695 3.955524 TTACAACCAGGTCCCTGAAAA 57.044 42.857 14.98 0.00 46.30 2.29
686 699 5.773176 AGTTAAATTTACAACCAGGTCCCTG 59.227 40.000 6.35 6.35 43.26 4.45
690 703 9.836076 GTCATTAGTTAAATTTACAACCAGGTC 57.164 33.333 0.00 0.00 0.00 3.85
699 712 8.520351 AGCCCACTTGTCATTAGTTAAATTTAC 58.480 33.333 0.00 0.00 0.00 2.01
712 725 3.110705 AGATGTAGAGCCCACTTGTCAT 58.889 45.455 0.00 0.00 0.00 3.06
713 726 2.540383 AGATGTAGAGCCCACTTGTCA 58.460 47.619 0.00 0.00 0.00 3.58
714 727 4.342378 TGATAGATGTAGAGCCCACTTGTC 59.658 45.833 0.00 0.00 0.00 3.18
719 732 5.474578 TTCATGATAGATGTAGAGCCCAC 57.525 43.478 0.00 0.00 0.00 4.61
750 763 9.173939 CATTTGTTTTGATAGAATAGATTCCGC 57.826 33.333 0.00 0.00 37.51 5.54
792 805 9.620660 CGGCATACCCTAAAATATATTTTTCAC 57.379 33.333 24.53 9.18 40.24 3.18
800 813 5.714333 TCGTACCGGCATACCCTAAAATATA 59.286 40.000 0.00 0.00 0.00 0.86
803 816 2.699846 TCGTACCGGCATACCCTAAAAT 59.300 45.455 0.00 0.00 0.00 1.82
808 821 0.178970 ATCTCGTACCGGCATACCCT 60.179 55.000 0.00 0.00 0.00 4.34
809 822 0.677842 AATCTCGTACCGGCATACCC 59.322 55.000 0.00 0.00 0.00 3.69
815 828 3.169355 TCCTTAAAATCTCGTACCGGC 57.831 47.619 0.00 0.00 0.00 6.13
816 829 4.982916 CAGATCCTTAAAATCTCGTACCGG 59.017 45.833 0.00 0.00 31.05 5.28
817 830 4.444720 GCAGATCCTTAAAATCTCGTACCG 59.555 45.833 0.00 0.00 31.05 4.02
819 832 7.649973 TCTAGCAGATCCTTAAAATCTCGTAC 58.350 38.462 0.00 0.00 31.05 3.67
820 833 7.818997 TCTAGCAGATCCTTAAAATCTCGTA 57.181 36.000 0.00 0.00 31.05 3.43
822 835 6.090628 GCATCTAGCAGATCCTTAAAATCTCG 59.909 42.308 0.00 0.00 44.79 4.04
823 836 7.363205 GCATCTAGCAGATCCTTAAAATCTC 57.637 40.000 0.00 0.00 44.79 2.75
840 853 9.453058 TCTGTGCCTTCAGTTTAGAGCATCTAG 62.453 44.444 0.00 0.00 41.25 2.43
841 854 7.756483 TCTGTGCCTTCAGTTTAGAGCATCTA 61.756 42.308 0.00 0.00 40.35 1.98
842 855 7.030300 TCTGTGCCTTCAGTTTAGAGCATCT 62.030 44.000 0.00 0.00 41.64 2.90
843 856 3.338249 TGTGCCTTCAGTTTAGAGCATC 58.662 45.455 0.00 0.00 32.11 3.91
844 857 3.008375 TCTGTGCCTTCAGTTTAGAGCAT 59.992 43.478 0.00 0.00 36.85 3.79
845 858 2.368548 TCTGTGCCTTCAGTTTAGAGCA 59.631 45.455 0.00 0.00 36.85 4.26
846 859 2.999355 CTCTGTGCCTTCAGTTTAGAGC 59.001 50.000 0.00 0.00 36.85 4.09
847 860 4.264460 ACTCTGTGCCTTCAGTTTAGAG 57.736 45.455 0.00 0.00 36.85 2.43
848 861 4.689612 AACTCTGTGCCTTCAGTTTAGA 57.310 40.909 0.00 0.00 36.85 2.10
849 862 5.757850 AAAACTCTGTGCCTTCAGTTTAG 57.242 39.130 0.00 0.00 36.85 1.85
875 888 4.221703 TGTGCCTTCAGTTCCTTTCAAAAA 59.778 37.500 0.00 0.00 0.00 1.94
876 889 3.766591 TGTGCCTTCAGTTCCTTTCAAAA 59.233 39.130 0.00 0.00 0.00 2.44
877 890 3.360867 TGTGCCTTCAGTTCCTTTCAAA 58.639 40.909 0.00 0.00 0.00 2.69
878 891 2.951642 CTGTGCCTTCAGTTCCTTTCAA 59.048 45.455 0.00 0.00 0.00 2.69
879 892 2.172505 TCTGTGCCTTCAGTTCCTTTCA 59.827 45.455 0.00 0.00 36.85 2.69
880 893 2.810852 CTCTGTGCCTTCAGTTCCTTTC 59.189 50.000 0.00 0.00 36.85 2.62
881 894 2.173569 ACTCTGTGCCTTCAGTTCCTTT 59.826 45.455 0.00 0.00 36.85 3.11
882 895 1.771255 ACTCTGTGCCTTCAGTTCCTT 59.229 47.619 0.00 0.00 36.85 3.36
883 896 1.428869 ACTCTGTGCCTTCAGTTCCT 58.571 50.000 0.00 0.00 36.85 3.36
884 897 2.262423 AACTCTGTGCCTTCAGTTCC 57.738 50.000 0.00 0.00 36.85 3.62
885 898 3.067833 GGTAACTCTGTGCCTTCAGTTC 58.932 50.000 0.00 0.00 36.85 3.01
889 902 0.320421 GCGGTAACTCTGTGCCTTCA 60.320 55.000 0.00 0.00 0.00 3.02
893 906 2.033194 GGTGCGGTAACTCTGTGCC 61.033 63.158 0.00 0.00 0.00 5.01
947 969 2.703007 AGCTCAGTTCACTTCCACTTCT 59.297 45.455 0.00 0.00 0.00 2.85
953 975 1.899142 AGAGGAGCTCAGTTCACTTCC 59.101 52.381 17.19 0.00 32.06 3.46
1036 1065 0.335019 TGTCGATCTGGAGAAGGGGA 59.665 55.000 0.00 0.00 0.00 4.81
1065 1103 4.600983 AGGATTGGGGAGAGGAAGATAATG 59.399 45.833 0.00 0.00 0.00 1.90
1066 1104 4.849129 AGGATTGGGGAGAGGAAGATAAT 58.151 43.478 0.00 0.00 0.00 1.28
1067 1105 4.077745 AGAGGATTGGGGAGAGGAAGATAA 60.078 45.833 0.00 0.00 0.00 1.75
1068 1106 3.472848 AGAGGATTGGGGAGAGGAAGATA 59.527 47.826 0.00 0.00 0.00 1.98
1069 1107 2.252408 AGAGGATTGGGGAGAGGAAGAT 59.748 50.000 0.00 0.00 0.00 2.40
1070 1108 1.653918 AGAGGATTGGGGAGAGGAAGA 59.346 52.381 0.00 0.00 0.00 2.87
1071 1109 2.046292 GAGAGGATTGGGGAGAGGAAG 58.954 57.143 0.00 0.00 0.00 3.46
1072 1110 1.653918 AGAGAGGATTGGGGAGAGGAA 59.346 52.381 0.00 0.00 0.00 3.36
1117 1157 3.453070 GAGGGCACTCCGCAGATCC 62.453 68.421 3.97 0.00 45.17 3.36
1137 1177 6.871844 ACGAACCCTAGGTTAATAGAGAAAC 58.128 40.000 8.29 0.00 46.95 2.78
1160 1200 2.985456 CTGCAGGGAGTGAGGGAC 59.015 66.667 5.57 0.00 0.00 4.46
1220 1269 2.430367 GAGGCCGTGGTGGTTCTT 59.570 61.111 0.00 0.00 41.21 2.52
1417 2135 7.437267 CCAATTAAGCAAGATAGCCAATTCAAG 59.563 37.037 0.00 0.00 31.28 3.02
1567 2330 8.680903 AGTGCATGTATTTTGAAGGAGAAATAG 58.319 33.333 0.00 0.00 30.69 1.73
1767 2545 3.181500 GGTTCATTGAAACATAGGTCGCC 60.181 47.826 9.58 0.00 0.00 5.54
1789 2567 3.374058 GGTGTTAGAATCCACATCAACGG 59.626 47.826 0.00 0.00 33.19 4.44
1792 2570 4.545208 TCGGTGTTAGAATCCACATCAA 57.455 40.909 0.00 0.00 33.19 2.57
2057 4274 8.325787 TCTTCAACTGGGTAATCAAATAGCTTA 58.674 33.333 0.00 0.00 0.00 3.09
2061 4278 7.337942 AGCTTCTTCAACTGGGTAATCAAATAG 59.662 37.037 0.00 0.00 0.00 1.73
2158 4379 5.028549 TCCTGAGCTTGGCTTTATAGAAG 57.971 43.478 0.00 0.00 39.88 2.85
2196 4417 7.226918 AGAGTTTAAAACAAGCCTTCTGAGTAC 59.773 37.037 0.00 0.00 0.00 2.73
2216 4437 9.525826 AAATCTCCAAATATCTGAACAGAGTTT 57.474 29.630 10.26 10.21 41.33 2.66
2366 4596 1.338107 TCACAACCATCTGGACGTCT 58.662 50.000 16.46 0.00 38.94 4.18
2471 4701 4.419522 AGTGGTATCAAACGCAATTGTC 57.580 40.909 7.40 0.00 0.00 3.18
2487 4717 2.026822 CCAGTGCAGAAGGATTAGTGGT 60.027 50.000 0.00 0.00 0.00 4.16
2761 5000 8.879342 AGTCCATTATCTTCATTTAACTCTCG 57.121 34.615 0.00 0.00 0.00 4.04
2812 5057 1.770110 TCTCCAGTTGGGGTGCAGT 60.770 57.895 0.00 0.00 36.89 4.40
3151 5428 2.485479 CGTAATCATCCTCACCCCAAGG 60.485 54.545 0.00 0.00 40.04 3.61
3152 5429 2.485479 CCGTAATCATCCTCACCCCAAG 60.485 54.545 0.00 0.00 0.00 3.61
3153 5430 1.488812 CCGTAATCATCCTCACCCCAA 59.511 52.381 0.00 0.00 0.00 4.12
3162 5442 4.220821 TCTCTATTCTGCCCGTAATCATCC 59.779 45.833 0.00 0.00 0.00 3.51
3176 5456 8.804912 AATTCTGCTTTCAATGTCTCTATTCT 57.195 30.769 0.00 0.00 0.00 2.40
3182 5462 6.524586 CGGTAAAATTCTGCTTTCAATGTCTC 59.475 38.462 0.00 0.00 0.00 3.36
3187 5467 4.081697 CCCCGGTAAAATTCTGCTTTCAAT 60.082 41.667 0.00 0.00 0.00 2.57
3192 5472 1.076513 ACCCCCGGTAAAATTCTGCTT 59.923 47.619 0.00 0.00 32.11 3.91
3193 5473 0.702316 ACCCCCGGTAAAATTCTGCT 59.298 50.000 0.00 0.00 32.11 4.24
3194 5474 1.100510 GACCCCCGGTAAAATTCTGC 58.899 55.000 0.00 0.00 35.25 4.26
3420 5709 5.393962 GCAAAGCAGGTAGACACATAAAAG 58.606 41.667 0.00 0.00 0.00 2.27
3422 5711 3.756434 GGCAAAGCAGGTAGACACATAAA 59.244 43.478 0.00 0.00 0.00 1.40
3423 5712 3.343617 GGCAAAGCAGGTAGACACATAA 58.656 45.455 0.00 0.00 0.00 1.90
3424 5713 2.355716 GGGCAAAGCAGGTAGACACATA 60.356 50.000 0.00 0.00 0.00 2.29
3425 5714 1.614317 GGGCAAAGCAGGTAGACACAT 60.614 52.381 0.00 0.00 0.00 3.21
3426 5715 0.250727 GGGCAAAGCAGGTAGACACA 60.251 55.000 0.00 0.00 0.00 3.72
3427 5716 0.960861 GGGGCAAAGCAGGTAGACAC 60.961 60.000 0.00 0.00 0.00 3.67
3428 5717 1.133809 AGGGGCAAAGCAGGTAGACA 61.134 55.000 0.00 0.00 0.00 3.41
3429 5718 0.393132 GAGGGGCAAAGCAGGTAGAC 60.393 60.000 0.00 0.00 0.00 2.59
3430 5719 0.547712 AGAGGGGCAAAGCAGGTAGA 60.548 55.000 0.00 0.00 0.00 2.59
3431 5720 0.329596 AAGAGGGGCAAAGCAGGTAG 59.670 55.000 0.00 0.00 0.00 3.18
3432 5721 1.663911 TAAGAGGGGCAAAGCAGGTA 58.336 50.000 0.00 0.00 0.00 3.08
3433 5722 0.777446 TTAAGAGGGGCAAAGCAGGT 59.223 50.000 0.00 0.00 0.00 4.00
3434 5723 2.149973 ATTAAGAGGGGCAAAGCAGG 57.850 50.000 0.00 0.00 0.00 4.85
3435 5724 5.659440 TTTTATTAAGAGGGGCAAAGCAG 57.341 39.130 0.00 0.00 0.00 4.24
3489 5778 5.073144 AGACACATAAAAGGGAGAACCAAGA 59.927 40.000 0.00 0.00 43.89 3.02
3490 5779 5.316987 AGACACATAAAAGGGAGAACCAAG 58.683 41.667 0.00 0.00 43.89 3.61
3491 5780 5.313712 GAGACACATAAAAGGGAGAACCAA 58.686 41.667 0.00 0.00 43.89 3.67
3492 5781 4.263331 GGAGACACATAAAAGGGAGAACCA 60.263 45.833 0.00 0.00 43.89 3.67
3493 5782 4.262617 GGAGACACATAAAAGGGAGAACC 58.737 47.826 0.00 0.00 40.67 3.62
3499 5791 2.749621 GCACTGGAGACACATAAAAGGG 59.250 50.000 0.00 0.00 35.60 3.95
3709 6005 2.789845 TTTTTCATCCCGAGGCGCGA 62.790 55.000 12.10 0.00 44.57 5.87
3837 6133 2.579738 GGGCAGTTCCTCCTCGAC 59.420 66.667 0.00 0.00 34.39 4.20
3838 6134 3.068691 CGGGCAGTTCCTCCTCGA 61.069 66.667 0.00 0.00 34.39 4.04
3839 6135 4.148825 CCGGGCAGTTCCTCCTCG 62.149 72.222 0.00 0.00 34.39 4.63
3840 6136 3.003763 ACCGGGCAGTTCCTCCTC 61.004 66.667 6.32 0.00 34.39 3.71
3841 6137 3.003763 GACCGGGCAGTTCCTCCT 61.004 66.667 0.00 0.00 34.39 3.69
3842 6138 4.452733 CGACCGGGCAGTTCCTCC 62.453 72.222 8.76 0.00 34.39 4.30
3843 6139 3.358076 CTCGACCGGGCAGTTCCTC 62.358 68.421 8.76 0.00 34.39 3.71
3844 6140 3.382832 CTCGACCGGGCAGTTCCT 61.383 66.667 8.76 0.00 34.39 3.36
3845 6141 4.452733 CCTCGACCGGGCAGTTCC 62.453 72.222 8.76 0.00 0.00 3.62
3846 6142 3.358076 CTCCTCGACCGGGCAGTTC 62.358 68.421 8.76 0.00 0.00 3.01
3847 6143 3.382832 CTCCTCGACCGGGCAGTT 61.383 66.667 8.76 0.00 0.00 3.16
3850 6146 4.689549 TTCCTCCTCGACCGGGCA 62.690 66.667 8.76 0.00 0.00 5.36
3851 6147 4.144703 GTTCCTCCTCGACCGGGC 62.145 72.222 6.32 0.00 0.00 6.13
3852 6148 3.459063 GGTTCCTCCTCGACCGGG 61.459 72.222 6.32 0.00 0.00 5.73
3853 6149 2.362632 AGGTTCCTCCTCGACCGG 60.363 66.667 0.00 0.00 44.42 5.28
3854 6150 1.248785 TTCAGGTTCCTCCTCGACCG 61.249 60.000 0.00 0.00 46.24 4.79
3947 6243 1.067635 CAAAATTTGCTGGAGGACGGG 60.068 52.381 0.00 0.00 0.00 5.28
3988 6284 2.068519 GTGATGTCGATGCAGTGAACA 58.931 47.619 0.00 0.00 0.00 3.18
4191 6692 6.014925 GGGCAGTTTTCTAAATTTTGGAGGTA 60.015 38.462 0.00 0.00 0.00 3.08
4247 6748 5.832539 AATAGGGATTCATACTGGACAGG 57.167 43.478 4.14 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.