Multiple sequence alignment - TraesCS7D01G516700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G516700 chr7D 100.000 2423 0 0 1 2423 616067180 616069602 0.000000e+00 4475
1 TraesCS7D01G516700 chr7D 85.596 1208 101 21 457 1622 616102583 616103759 0.000000e+00 1199
2 TraesCS7D01G516700 chr7D 84.225 1122 114 20 568 1657 616055152 616056242 0.000000e+00 1033
3 TraesCS7D01G516700 chr7D 85.000 780 100 10 888 1655 616174087 616174861 0.000000e+00 776
4 TraesCS7D01G516700 chr7D 88.042 577 58 11 1111 1680 616075963 616076535 0.000000e+00 673
5 TraesCS7D01G516700 chr7D 88.411 535 60 2 1878 2411 34315235 34315768 0.000000e+00 643
6 TraesCS7D01G516700 chr7D 81.818 429 42 16 1 419 616102064 616102466 6.460000e-86 327
7 TraesCS7D01G516700 chr7D 92.073 164 11 2 420 582 616054970 616055132 1.870000e-56 230
8 TraesCS7D01G516700 chr7D 83.766 154 18 6 269 420 616166793 616166941 3.250000e-29 139
9 TraesCS7D01G516700 chr7B 86.460 1130 88 26 601 1699 709258218 709259313 0.000000e+00 1179
10 TraesCS7D01G516700 chr7B 85.272 1066 122 18 617 1655 709322868 709323925 0.000000e+00 1066
11 TraesCS7D01G516700 chr7B 91.190 420 34 3 1 419 709353622 709354039 3.500000e-158 568
12 TraesCS7D01G516700 chr7B 93.827 243 6 2 503 737 709354145 709354386 8.240000e-95 357
13 TraesCS7D01G516700 chr7B 85.263 190 14 9 406 586 709257978 709258162 1.480000e-42 183
14 TraesCS7D01G516700 chr7B 92.708 96 6 1 1 95 709257774 709257869 1.170000e-28 137
15 TraesCS7D01G516700 chr7A 86.229 1111 96 23 575 1655 708912817 708913900 0.000000e+00 1151
16 TraesCS7D01G516700 chr7A 89.782 871 73 9 776 1646 709028446 709029300 0.000000e+00 1101
17 TraesCS7D01G516700 chr7A 93.653 646 36 3 1782 2423 708920188 708920832 0.000000e+00 961
18 TraesCS7D01G516700 chr7A 84.298 898 110 15 776 1655 709141809 709142693 0.000000e+00 848
19 TraesCS7D01G516700 chr7A 80.851 1081 134 46 510 1551 709121410 709122456 0.000000e+00 782
20 TraesCS7D01G516700 chr7A 83.168 909 98 34 776 1655 709129343 709130225 0.000000e+00 780
21 TraesCS7D01G516700 chr7A 88.361 421 41 5 1 419 708918440 708918854 1.290000e-137 499
22 TraesCS7D01G516700 chr7A 88.000 425 38 6 1 419 708912140 708912557 7.780000e-135 490
23 TraesCS7D01G516700 chr7A 82.796 279 17 19 406 657 709028113 709028387 1.130000e-53 220
24 TraesCS7D01G516700 chr7A 84.043 188 19 7 581 765 708919110 708919289 1.150000e-38 171
25 TraesCS7D01G516700 chr1A 87.709 537 58 6 1878 2411 53416333 53416864 9.520000e-174 619
26 TraesCS7D01G516700 chr1A 84.423 520 70 9 1895 2411 516577339 516576828 3.600000e-138 501
27 TraesCS7D01G516700 chr1B 87.942 481 52 4 1933 2411 547598697 547599173 1.630000e-156 562
28 TraesCS7D01G516700 chr1B 85.287 401 52 2 2011 2404 28328643 28329043 8.070000e-110 407
29 TraesCS7D01G516700 chr3D 83.685 521 76 4 1892 2410 369807232 369806719 1.300000e-132 483
30 TraesCS7D01G516700 chr6D 78.231 294 58 6 1894 2185 88881422 88881133 1.480000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G516700 chr7D 616067180 616069602 2422 False 4475.000000 4475 100.000000 1 2423 1 chr7D.!!$F2 2422
1 TraesCS7D01G516700 chr7D 616174087 616174861 774 False 776.000000 776 85.000000 888 1655 1 chr7D.!!$F5 767
2 TraesCS7D01G516700 chr7D 616102064 616103759 1695 False 763.000000 1199 83.707000 1 1622 2 chr7D.!!$F7 1621
3 TraesCS7D01G516700 chr7D 616075963 616076535 572 False 673.000000 673 88.042000 1111 1680 1 chr7D.!!$F3 569
4 TraesCS7D01G516700 chr7D 34315235 34315768 533 False 643.000000 643 88.411000 1878 2411 1 chr7D.!!$F1 533
5 TraesCS7D01G516700 chr7D 616054970 616056242 1272 False 631.500000 1033 88.149000 420 1657 2 chr7D.!!$F6 1237
6 TraesCS7D01G516700 chr7B 709322868 709323925 1057 False 1066.000000 1066 85.272000 617 1655 1 chr7B.!!$F1 1038
7 TraesCS7D01G516700 chr7B 709257774 709259313 1539 False 499.666667 1179 88.143667 1 1699 3 chr7B.!!$F2 1698
8 TraesCS7D01G516700 chr7B 709353622 709354386 764 False 462.500000 568 92.508500 1 737 2 chr7B.!!$F3 736
9 TraesCS7D01G516700 chr7A 709141809 709142693 884 False 848.000000 848 84.298000 776 1655 1 chr7A.!!$F3 879
10 TraesCS7D01G516700 chr7A 708912140 708913900 1760 False 820.500000 1151 87.114500 1 1655 2 chr7A.!!$F4 1654
11 TraesCS7D01G516700 chr7A 709121410 709122456 1046 False 782.000000 782 80.851000 510 1551 1 chr7A.!!$F1 1041
12 TraesCS7D01G516700 chr7A 709129343 709130225 882 False 780.000000 780 83.168000 776 1655 1 chr7A.!!$F2 879
13 TraesCS7D01G516700 chr7A 709028113 709029300 1187 False 660.500000 1101 86.289000 406 1646 2 chr7A.!!$F6 1240
14 TraesCS7D01G516700 chr7A 708918440 708920832 2392 False 543.666667 961 88.685667 1 2423 3 chr7A.!!$F5 2422
15 TraesCS7D01G516700 chr1A 53416333 53416864 531 False 619.000000 619 87.709000 1878 2411 1 chr1A.!!$F1 533
16 TraesCS7D01G516700 chr1A 516576828 516577339 511 True 501.000000 501 84.423000 1895 2411 1 chr1A.!!$R1 516
17 TraesCS7D01G516700 chr3D 369806719 369807232 513 True 483.000000 483 83.685000 1892 2410 1 chr3D.!!$R1 518


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 298 0.241213 GGGCGACAAGAAAAAGCTCC 59.759 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 2259 0.381909 CTACGTACGTACTACCGCGC 60.382 60.0 23.6 0.0 0.0 6.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 56 6.212888 ACAAAGACTTGCAGAAAAATCAGT 57.787 33.333 0.00 0.00 35.84 3.41
100 113 2.279136 CGTACGCAGCTATCACTTTCAC 59.721 50.000 0.52 0.00 0.00 3.18
158 171 8.149973 TCAGATAACCACAAACACTAAAGAAC 57.850 34.615 0.00 0.00 0.00 3.01
162 175 4.976987 ACCACAAACACTAAAGAACAACG 58.023 39.130 0.00 0.00 0.00 4.10
175 188 1.607148 GAACAACGAGTCCCCAAAAGG 59.393 52.381 0.00 0.00 0.00 3.11
251 267 4.786425 AGGAAAAATCTACCATGCCTCTC 58.214 43.478 0.00 0.00 0.00 3.20
252 268 3.885901 GGAAAAATCTACCATGCCTCTCC 59.114 47.826 0.00 0.00 0.00 3.71
277 294 1.028905 TGTGGGGCGACAAGAAAAAG 58.971 50.000 0.00 0.00 0.00 2.27
281 298 0.241213 GGGCGACAAGAAAAAGCTCC 59.759 55.000 0.00 0.00 0.00 4.70
322 339 5.952033 AGTCGACCTACAGTATGAAAAGAC 58.048 41.667 13.01 0.00 39.69 3.01
326 343 5.800941 CGACCTACAGTATGAAAAGACAGAC 59.199 44.000 0.00 0.00 39.69 3.51
442 521 0.601057 GTTGGGGGAATCCAAACACG 59.399 55.000 0.09 0.00 46.54 4.49
599 760 5.687730 CACAGCTAGACTTTATATGTCGTGG 59.312 44.000 0.00 0.00 39.24 4.94
731 923 3.149981 CCTTGTTGGGGAAGAGAAGTTC 58.850 50.000 0.00 0.00 0.00 3.01
815 1052 7.393216 AGCTCACACATAATCTTCTTCTTCTT 58.607 34.615 0.00 0.00 0.00 2.52
836 1073 3.198068 TCGCATCTTTGTGGAGATAAGC 58.802 45.455 0.00 0.00 34.68 3.09
841 1078 4.801330 TCTTTGTGGAGATAAGCTCGAA 57.199 40.909 0.00 0.00 44.91 3.71
880 1119 3.391382 CACAGACCCCTCCGTCCC 61.391 72.222 0.00 0.00 32.91 4.46
953 1221 3.793559 ACAGTGCAACGAAGAAGTACTT 58.206 40.909 8.13 8.13 45.86 2.24
960 1228 4.671068 GCAACGAAGAAGTACTTTGCTTTC 59.329 41.667 16.75 13.38 42.17 2.62
991 1259 2.757868 ACTCAAGAACAGAGATCGGAGG 59.242 50.000 0.00 0.00 36.91 4.30
993 1261 3.636300 CTCAAGAACAGAGATCGGAGGAT 59.364 47.826 0.00 0.00 35.09 3.24
1040 1318 4.875713 GGCGGCGGTGATGGGATT 62.876 66.667 9.78 0.00 0.00 3.01
1536 2061 2.121786 GACTGTCTTGCAACGTACGAA 58.878 47.619 24.41 4.46 0.00 3.85
1711 2237 7.061557 GTGTAGCTCTTTTTCTGAATGATTTGC 59.938 37.037 0.00 0.00 0.00 3.68
1722 2248 4.740268 TGAATGATTTGCAGATTGCTCAC 58.260 39.130 2.48 0.00 45.31 3.51
1732 2258 1.589716 GATTGCTCACCACACCTGCC 61.590 60.000 0.00 0.00 0.00 4.85
1733 2259 4.624364 TGCTCACCACACCTGCCG 62.624 66.667 0.00 0.00 0.00 5.69
1747 2273 4.236416 GCCGCGCGGTAGTACGTA 62.236 66.667 45.02 0.00 37.65 3.57
1748 2274 2.351210 CCGCGCGGTAGTACGTAC 60.351 66.667 39.71 18.10 35.98 3.67
1749 2275 2.715077 CGCGCGGTAGTACGTACG 60.715 66.667 24.84 15.01 35.98 3.67
1750 2276 2.399611 GCGCGGTAGTACGTACGT 59.600 61.111 25.98 25.98 35.98 3.57
1751 2277 1.634225 GCGCGGTAGTACGTACGTA 59.366 57.895 23.60 23.60 35.98 3.57
1752 2278 0.381909 GCGCGGTAGTACGTACGTAG 60.382 60.000 27.48 16.43 35.98 3.51
1753 2279 0.381909 CGCGGTAGTACGTACGTAGC 60.382 60.000 27.48 23.44 35.98 3.58
1754 2280 0.931005 GCGGTAGTACGTACGTAGCT 59.069 55.000 27.48 25.29 35.98 3.32
1755 2281 1.071173 GCGGTAGTACGTACGTAGCTC 60.071 57.143 27.48 16.22 35.98 4.09
1756 2282 2.464865 CGGTAGTACGTACGTAGCTCT 58.535 52.381 27.48 21.87 31.59 4.09
1757 2283 2.469516 CGGTAGTACGTACGTAGCTCTC 59.530 54.545 27.48 15.52 31.59 3.20
1758 2284 3.712187 GGTAGTACGTACGTAGCTCTCT 58.288 50.000 27.48 21.21 31.59 3.10
1759 2285 4.116238 GGTAGTACGTACGTAGCTCTCTT 58.884 47.826 27.48 10.21 31.59 2.85
1760 2286 4.568760 GGTAGTACGTACGTAGCTCTCTTT 59.431 45.833 27.48 8.99 31.59 2.52
1761 2287 4.596801 AGTACGTACGTAGCTCTCTTTG 57.403 45.455 27.48 0.00 0.00 2.77
1762 2288 4.248859 AGTACGTACGTAGCTCTCTTTGA 58.751 43.478 27.48 1.40 0.00 2.69
1763 2289 4.874966 AGTACGTACGTAGCTCTCTTTGAT 59.125 41.667 27.48 0.00 0.00 2.57
1764 2290 6.045318 AGTACGTACGTAGCTCTCTTTGATA 58.955 40.000 27.48 0.70 0.00 2.15
1765 2291 5.808042 ACGTACGTAGCTCTCTTTGATAA 57.192 39.130 21.41 0.00 0.00 1.75
1766 2292 6.374565 ACGTACGTAGCTCTCTTTGATAAT 57.625 37.500 21.41 0.00 0.00 1.28
1767 2293 6.793349 ACGTACGTAGCTCTCTTTGATAATT 58.207 36.000 21.41 0.00 0.00 1.40
1768 2294 6.691818 ACGTACGTAGCTCTCTTTGATAATTG 59.308 38.462 21.41 0.00 0.00 2.32
1769 2295 6.910972 CGTACGTAGCTCTCTTTGATAATTGA 59.089 38.462 7.22 0.00 0.00 2.57
1770 2296 7.431376 CGTACGTAGCTCTCTTTGATAATTGAA 59.569 37.037 7.22 0.00 0.00 2.69
1771 2297 7.763172 ACGTAGCTCTCTTTGATAATTGAAG 57.237 36.000 0.00 0.00 0.00 3.02
1772 2298 6.758886 ACGTAGCTCTCTTTGATAATTGAAGG 59.241 38.462 0.00 0.00 0.00 3.46
1773 2299 6.980978 CGTAGCTCTCTTTGATAATTGAAGGA 59.019 38.462 0.00 0.00 0.00 3.36
1774 2300 7.492669 CGTAGCTCTCTTTGATAATTGAAGGAA 59.507 37.037 0.00 0.00 0.00 3.36
1775 2301 9.336171 GTAGCTCTCTTTGATAATTGAAGGAAT 57.664 33.333 0.00 0.00 0.00 3.01
1776 2302 8.820153 AGCTCTCTTTGATAATTGAAGGAATT 57.180 30.769 0.00 0.00 37.96 2.17
1777 2303 9.252635 AGCTCTCTTTGATAATTGAAGGAATTT 57.747 29.630 0.00 0.00 35.74 1.82
1778 2304 9.298774 GCTCTCTTTGATAATTGAAGGAATTTG 57.701 33.333 0.00 0.00 35.74 2.32
1786 2312 8.966868 TGATAATTGAAGGAATTTGTTACCTCC 58.033 33.333 0.00 0.00 35.74 4.30
1815 2341 1.603802 CGTTTCTTCCTTGCAAGCTGA 59.396 47.619 21.43 14.33 0.00 4.26
1868 2394 6.258727 CCACAGTACATTAATCCATGTCAGTC 59.741 42.308 0.00 0.00 38.40 3.51
1872 2398 8.554528 CAGTACATTAATCCATGTCAGTCATTC 58.445 37.037 0.00 0.00 38.40 2.67
1876 2402 7.067859 ACATTAATCCATGTCAGTCATTCCTTG 59.932 37.037 0.00 0.00 31.26 3.61
1882 2408 5.922544 CCATGTCAGTCATTCCTTGTTTTTC 59.077 40.000 0.00 0.00 34.09 2.29
2109 2640 1.345741 CACAGGTGAAAGAGGCAGAGA 59.654 52.381 0.00 0.00 0.00 3.10
2193 2724 2.214181 CTGTAGAACAGGCGCTCGGT 62.214 60.000 7.64 1.02 42.35 4.69
2231 2762 2.828549 GATGTTCCCCGCGCCAAT 60.829 61.111 0.00 0.00 0.00 3.16
2254 2785 4.406972 TCTGGATCCAGATCTGACGAATTT 59.593 41.667 35.92 0.00 46.80 1.82
2411 2944 1.069090 TCTGAACGAACGGCAAGCT 59.931 52.632 0.00 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 56 1.026182 GCAATGATCTGCCGTGACCA 61.026 55.000 0.00 0.00 36.25 4.02
100 113 3.411351 CCCACAAACTCGTCCGCG 61.411 66.667 0.00 0.00 39.92 6.46
131 144 8.378172 TCTTTAGTGTTTGTGGTTATCTGAAG 57.622 34.615 0.00 0.00 0.00 3.02
158 171 1.524008 GGCCTTTTGGGGACTCGTTG 61.524 60.000 0.00 0.00 40.82 4.10
162 175 0.679505 GTTTGGCCTTTTGGGGACTC 59.320 55.000 3.32 0.00 40.82 3.36
175 188 4.094739 GCCACATATTTTCCATTGTTTGGC 59.905 41.667 0.00 0.00 46.01 4.52
197 213 1.824230 TGGGCTAATTGATTGTGTGGC 59.176 47.619 0.00 0.00 0.00 5.01
208 224 1.202639 TGCGACGATGATGGGCTAATT 60.203 47.619 0.00 0.00 0.00 1.40
251 267 3.520862 GTCGCCCCACATGCATGG 61.521 66.667 29.41 15.39 39.71 3.66
252 268 2.274232 CTTGTCGCCCCACATGCATG 62.274 60.000 25.09 25.09 0.00 4.06
462 543 9.823647 TCAATATTGCCAACTTGTTTTAGAAAA 57.176 25.926 10.76 0.00 0.00 2.29
464 545 9.255304 GTTCAATATTGCCAACTTGTTTTAGAA 57.745 29.630 10.76 0.00 0.00 2.10
787 1010 5.188555 AGAAGAAGATTATGTGTGAGCTCCA 59.811 40.000 12.15 6.01 0.00 3.86
815 1052 3.118629 AGCTTATCTCCACAAAGATGCGA 60.119 43.478 0.00 0.00 36.66 5.10
836 1073 0.809385 TCGTACTCCCAGCTTTCGAG 59.191 55.000 0.00 0.00 0.00 4.04
841 1078 1.889530 GCCACTCGTACTCCCAGCTT 61.890 60.000 0.00 0.00 0.00 3.74
849 1087 0.826256 TCTGTGGTGCCACTCGTACT 60.826 55.000 20.46 0.00 46.30 2.73
880 1119 2.613977 CCGCTGGATTTATAGGAGCTGG 60.614 54.545 0.00 0.00 0.00 4.85
885 1136 1.000506 GACGCCGCTGGATTTATAGGA 59.999 52.381 0.00 0.00 0.00 2.94
960 1228 2.414481 CTGTTCTTGAGTGCTTGATCCG 59.586 50.000 0.00 0.00 0.00 4.18
991 1259 2.243407 GAACGTAGCCATCGATCGATC 58.757 52.381 27.20 17.11 31.62 3.69
993 1261 3.839654 GAACGTAGCCATCGATCGA 57.160 52.632 21.86 21.86 0.00 3.59
1536 2061 2.933287 TGGGCCGTCCAATCCTGT 60.933 61.111 0.00 0.00 43.84 4.00
1587 2112 5.938125 AGATCTTTAAAAACGCCTCTTGCTA 59.062 36.000 0.00 0.00 38.05 3.49
1659 2185 6.879458 AGTATATATTCCTTGGCCGTTGATTC 59.121 38.462 0.00 0.00 0.00 2.52
1663 2189 5.179368 CACAGTATATATTCCTTGGCCGTTG 59.821 44.000 0.00 0.00 0.00 4.10
1711 2237 1.162698 CAGGTGTGGTGAGCAATCTG 58.837 55.000 0.00 0.00 0.00 2.90
1732 2258 2.073188 TACGTACGTACTACCGCGCG 62.073 60.000 25.67 25.67 35.45 6.86
1733 2259 0.381909 CTACGTACGTACTACCGCGC 60.382 60.000 23.60 0.00 0.00 6.86
1734 2260 0.381909 GCTACGTACGTACTACCGCG 60.382 60.000 23.60 13.21 0.00 6.46
1735 2261 0.931005 AGCTACGTACGTACTACCGC 59.069 55.000 23.60 22.70 0.00 5.68
1736 2262 2.464865 AGAGCTACGTACGTACTACCG 58.535 52.381 23.60 14.59 0.00 4.02
1737 2263 3.712187 AGAGAGCTACGTACGTACTACC 58.288 50.000 23.60 17.43 0.00 3.18
1738 2264 5.289675 TCAAAGAGAGCTACGTACGTACTAC 59.710 44.000 23.60 19.02 0.00 2.73
1739 2265 5.410924 TCAAAGAGAGCTACGTACGTACTA 58.589 41.667 23.60 6.61 0.00 1.82
1740 2266 4.248859 TCAAAGAGAGCTACGTACGTACT 58.751 43.478 23.60 22.69 0.00 2.73
1741 2267 4.590400 TCAAAGAGAGCTACGTACGTAC 57.410 45.455 23.60 18.90 0.00 3.67
1742 2268 6.908870 TTATCAAAGAGAGCTACGTACGTA 57.091 37.500 25.41 25.41 0.00 3.57
1743 2269 5.808042 TTATCAAAGAGAGCTACGTACGT 57.192 39.130 25.98 25.98 0.00 3.57
1744 2270 6.910972 TCAATTATCAAAGAGAGCTACGTACG 59.089 38.462 15.01 15.01 0.00 3.67
1745 2271 8.630278 TTCAATTATCAAAGAGAGCTACGTAC 57.370 34.615 0.00 0.00 0.00 3.67
1746 2272 7.921214 CCTTCAATTATCAAAGAGAGCTACGTA 59.079 37.037 0.00 0.00 0.00 3.57
1747 2273 6.758886 CCTTCAATTATCAAAGAGAGCTACGT 59.241 38.462 0.00 0.00 0.00 3.57
1748 2274 6.980978 TCCTTCAATTATCAAAGAGAGCTACG 59.019 38.462 0.00 0.00 0.00 3.51
1749 2275 8.723942 TTCCTTCAATTATCAAAGAGAGCTAC 57.276 34.615 0.00 0.00 0.00 3.58
1750 2276 9.911788 AATTCCTTCAATTATCAAAGAGAGCTA 57.088 29.630 0.00 0.00 32.48 3.32
1751 2277 8.820153 AATTCCTTCAATTATCAAAGAGAGCT 57.180 30.769 0.00 0.00 32.48 4.09
1752 2278 9.298774 CAAATTCCTTCAATTATCAAAGAGAGC 57.701 33.333 0.00 0.00 33.16 4.09
1760 2286 8.966868 GGAGGTAACAAATTCCTTCAATTATCA 58.033 33.333 0.00 0.00 33.16 2.15
1761 2287 8.966868 TGGAGGTAACAAATTCCTTCAATTATC 58.033 33.333 0.00 0.00 34.33 1.75
1762 2288 8.893563 TGGAGGTAACAAATTCCTTCAATTAT 57.106 30.769 0.00 0.00 34.33 1.28
1763 2289 7.396055 CCTGGAGGTAACAAATTCCTTCAATTA 59.604 37.037 0.00 0.00 36.55 1.40
1764 2290 6.211384 CCTGGAGGTAACAAATTCCTTCAATT 59.789 38.462 0.00 0.00 36.55 2.32
1765 2291 5.716703 CCTGGAGGTAACAAATTCCTTCAAT 59.283 40.000 0.00 0.00 36.55 2.57
1766 2292 5.076873 CCTGGAGGTAACAAATTCCTTCAA 58.923 41.667 0.00 0.00 36.55 2.69
1767 2293 4.662278 CCTGGAGGTAACAAATTCCTTCA 58.338 43.478 0.00 0.00 35.75 3.02
1782 2308 0.905357 AGAAACGATGGACCTGGAGG 59.095 55.000 0.00 0.00 42.17 4.30
1783 2309 2.622436 GAAGAAACGATGGACCTGGAG 58.378 52.381 0.00 0.00 0.00 3.86
1784 2310 1.278127 GGAAGAAACGATGGACCTGGA 59.722 52.381 0.00 0.00 0.00 3.86
1785 2311 1.279271 AGGAAGAAACGATGGACCTGG 59.721 52.381 0.00 0.00 0.00 4.45
1786 2312 2.744202 CAAGGAAGAAACGATGGACCTG 59.256 50.000 0.00 0.00 0.00 4.00
1853 2379 6.484288 ACAAGGAATGACTGACATGGATTAA 58.516 36.000 0.00 0.00 39.39 1.40
1924 2451 2.778299 AGTTTCCGCATGTATGTGTGT 58.222 42.857 4.88 0.00 36.60 3.72
2109 2640 2.104622 CCTGGATTTTGGTTTGCTGGTT 59.895 45.455 0.00 0.00 0.00 3.67
2193 2724 2.048597 GGTCGACACGCCACATCA 60.049 61.111 18.91 0.00 0.00 3.07



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.