Multiple sequence alignment - TraesCS7D01G516400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G516400 chr7D 100.000 3533 0 0 1 3533 616010729 616007197 0.000000e+00 6525.0
1 TraesCS7D01G516400 chr7D 88.456 1516 126 34 1093 2586 615942051 615943539 0.000000e+00 1784.0
2 TraesCS7D01G516400 chr7B 92.205 2104 111 23 996 3089 709095436 709093376 0.000000e+00 2928.0
3 TraesCS7D01G516400 chr7B 89.698 1456 109 25 1093 2532 709047977 709049407 0.000000e+00 1820.0
4 TraesCS7D01G516400 chr7B 87.273 275 12 11 3263 3533 709093309 709093054 3.450000e-75 292.0
5 TraesCS7D01G516400 chr7B 84.615 273 32 4 555 827 709096182 709095920 2.700000e-66 263.0
6 TraesCS7D01G516400 chr7B 96.226 53 1 1 895 947 709095584 709095533 6.280000e-13 86.1
7 TraesCS7D01G516400 chr7B 91.803 61 3 2 92 151 709096719 709096660 2.260000e-12 84.2
8 TraesCS7D01G516400 chr7B 86.250 80 5 3 2 78 709096782 709096706 8.130000e-12 82.4
9 TraesCS7D01G516400 chr7A 88.445 2103 137 51 895 2950 708785205 708783162 0.000000e+00 2440.0
10 TraesCS7D01G516400 chr7A 89.553 1455 101 27 1093 2532 708708261 708709679 0.000000e+00 1797.0
11 TraesCS7D01G516400 chr7A 84.053 301 22 14 3245 3528 708781148 708780857 2.090000e-67 267.0
12 TraesCS7D01G516400 chr7A 78.191 188 33 8 1430 1614 125479294 125479476 2.880000e-21 113.0
13 TraesCS7D01G516400 chr7A 90.000 90 5 2 555 644 708805475 708805390 2.880000e-21 113.0
14 TraesCS7D01G516400 chr2D 93.714 175 11 0 379 553 20551342 20551516 2.700000e-66 263.0
15 TraesCS7D01G516400 chr2D 93.143 175 12 0 379 553 395184341 395184167 1.260000e-64 257.0
16 TraesCS7D01G516400 chr2B 92.571 175 13 0 379 553 426101909 426101735 5.850000e-63 252.0
17 TraesCS7D01G516400 chr5B 92.442 172 13 0 382 553 597326057 597325886 2.720000e-61 246.0
18 TraesCS7D01G516400 chr5B 91.379 174 15 0 380 553 441073255 441073082 4.560000e-59 239.0
19 TraesCS7D01G516400 chr5B 89.362 47 5 0 2436 2482 486897299 486897345 3.810000e-05 60.2
20 TraesCS7D01G516400 chr3A 91.954 174 14 0 380 553 660524435 660524262 9.800000e-61 244.0
21 TraesCS7D01G516400 chr4B 91.061 179 16 0 375 553 103292379 103292557 3.520000e-60 243.0
22 TraesCS7D01G516400 chr3D 92.353 170 13 0 384 553 82728972 82729141 3.520000e-60 243.0
23 TraesCS7D01G516400 chr3B 91.379 174 15 0 380 553 596982482 596982309 4.560000e-59 239.0
24 TraesCS7D01G516400 chr5D 87.234 47 6 0 2436 2482 406199405 406199451 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G516400 chr7D 616007197 616010729 3532 True 6525.000000 6525 100.000000 1 3533 1 chr7D.!!$R1 3532
1 TraesCS7D01G516400 chr7D 615942051 615943539 1488 False 1784.000000 1784 88.456000 1093 2586 1 chr7D.!!$F1 1493
2 TraesCS7D01G516400 chr7B 709047977 709049407 1430 False 1820.000000 1820 89.698000 1093 2532 1 chr7B.!!$F1 1439
3 TraesCS7D01G516400 chr7B 709093054 709096782 3728 True 622.616667 2928 89.728667 2 3533 6 chr7B.!!$R1 3531
4 TraesCS7D01G516400 chr7A 708708261 708709679 1418 False 1797.000000 1797 89.553000 1093 2532 1 chr7A.!!$F2 1439
5 TraesCS7D01G516400 chr7A 708780857 708785205 4348 True 1353.500000 2440 86.249000 895 3528 2 chr7A.!!$R2 2633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 817 0.031585 CGTGTCGGTCTCAACAGGAA 59.968 55.0 0.0 0.0 34.12 3.36 F
1236 1777 0.325933 CCCTCAAGCTCCACATGACA 59.674 55.0 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 3064 0.669625 GGTTGTGCTCCAGGTCGTAC 60.670 60.0 0.00 0.0 0.00 3.67 R
3181 4065 0.038251 CGTGAGGTGAACAGCTAGCA 60.038 55.0 18.83 0.0 39.57 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 7.867445 ACTATAACAAATTGTTTTTGCGAGG 57.133 32.000 16.99 2.64 41.45 4.63
89 90 7.430441 ACTATAACAAATTGTTTTTGCGAGGT 58.570 30.769 16.99 3.18 41.45 3.85
90 91 8.569641 ACTATAACAAATTGTTTTTGCGAGGTA 58.430 29.630 16.99 0.00 41.45 3.08
120 121 3.686241 CAGATTGAAATGCCAGACGAAGA 59.314 43.478 0.00 0.00 0.00 2.87
121 122 4.154737 CAGATTGAAATGCCAGACGAAGAA 59.845 41.667 0.00 0.00 0.00 2.52
137 138 0.033366 AGAAAAACCGGGCAATGCAC 59.967 50.000 6.32 1.05 0.00 4.57
156 157 2.722936 CGTGTTGCGTGTTTGTAGAA 57.277 45.000 0.00 0.00 35.54 2.10
157 158 3.040990 CGTGTTGCGTGTTTGTAGAAA 57.959 42.857 0.00 0.00 35.54 2.52
158 159 3.418094 CGTGTTGCGTGTTTGTAGAAAA 58.582 40.909 0.00 0.00 35.54 2.29
159 160 4.032355 CGTGTTGCGTGTTTGTAGAAAAT 58.968 39.130 0.00 0.00 35.54 1.82
160 161 5.199000 CGTGTTGCGTGTTTGTAGAAAATA 58.801 37.500 0.00 0.00 35.54 1.40
161 162 5.335949 CGTGTTGCGTGTTTGTAGAAAATAG 59.664 40.000 0.00 0.00 35.54 1.73
163 164 7.346695 GTGTTGCGTGTTTGTAGAAAATAGTA 58.653 34.615 0.00 0.00 0.00 1.82
166 167 7.112528 TGCGTGTTTGTAGAAAATAGTACTG 57.887 36.000 5.39 0.00 0.00 2.74
167 168 6.013689 GCGTGTTTGTAGAAAATAGTACTGC 58.986 40.000 5.39 0.00 0.00 4.40
168 169 6.531439 CGTGTTTGTAGAAAATAGTACTGCC 58.469 40.000 5.39 0.00 0.00 4.85
169 170 6.146510 CGTGTTTGTAGAAAATAGTACTGCCA 59.853 38.462 5.39 0.00 0.00 4.92
170 171 7.148474 CGTGTTTGTAGAAAATAGTACTGCCAT 60.148 37.037 5.39 0.00 0.00 4.40
172 173 9.727859 TGTTTGTAGAAAATAGTACTGCCATAA 57.272 29.630 5.39 0.00 0.00 1.90
173 174 9.983804 GTTTGTAGAAAATAGTACTGCCATAAC 57.016 33.333 5.39 0.00 0.00 1.89
175 176 7.549839 TGTAGAAAATAGTACTGCCATAACGT 58.450 34.615 5.39 0.00 0.00 3.99
176 177 8.685427 TGTAGAAAATAGTACTGCCATAACGTA 58.315 33.333 5.39 0.00 0.00 3.57
177 178 7.998753 AGAAAATAGTACTGCCATAACGTAC 57.001 36.000 5.39 0.00 35.05 3.67
178 179 6.694411 AGAAAATAGTACTGCCATAACGTACG 59.306 38.462 15.01 15.01 38.73 3.67
179 180 5.756195 AATAGTACTGCCATAACGTACGA 57.244 39.130 24.41 0.00 38.73 3.43
180 181 5.756195 ATAGTACTGCCATAACGTACGAA 57.244 39.130 24.41 10.02 38.73 3.85
181 182 4.644103 AGTACTGCCATAACGTACGAAT 57.356 40.909 24.41 12.03 38.73 3.34
182 183 5.002464 AGTACTGCCATAACGTACGAATT 57.998 39.130 24.41 9.44 38.73 2.17
183 184 5.413499 AGTACTGCCATAACGTACGAATTT 58.587 37.500 24.41 8.64 38.73 1.82
184 185 6.563422 AGTACTGCCATAACGTACGAATTTA 58.437 36.000 24.41 10.78 38.73 1.40
185 186 5.961395 ACTGCCATAACGTACGAATTTAG 57.039 39.130 24.41 12.65 0.00 1.85
188 189 4.269123 TGCCATAACGTACGAATTTAGCTG 59.731 41.667 24.41 6.52 0.00 4.24
189 190 4.505191 GCCATAACGTACGAATTTAGCTGA 59.495 41.667 24.41 0.00 0.00 4.26
190 191 5.176958 GCCATAACGTACGAATTTAGCTGAT 59.823 40.000 24.41 0.00 0.00 2.90
191 192 6.615839 GCCATAACGTACGAATTTAGCTGATC 60.616 42.308 24.41 0.00 0.00 2.92
193 194 4.282950 ACGTACGAATTTAGCTGATCGA 57.717 40.909 24.41 0.00 38.59 3.59
194 195 4.033684 ACGTACGAATTTAGCTGATCGAC 58.966 43.478 24.41 10.04 38.59 4.20
195 196 3.421231 CGTACGAATTTAGCTGATCGACC 59.579 47.826 10.44 7.25 38.59 4.79
197 198 1.787155 CGAATTTAGCTGATCGACCGG 59.213 52.381 0.00 0.00 37.48 5.28
198 199 2.798499 CGAATTTAGCTGATCGACCGGT 60.798 50.000 6.92 6.92 37.48 5.28
199 200 2.225068 ATTTAGCTGATCGACCGGTG 57.775 50.000 14.63 4.45 0.00 4.94
201 202 2.607668 TTAGCTGATCGACCGGTGCG 62.608 60.000 14.63 16.22 0.00 5.34
220 344 2.042831 GCCCTTGCAGTGCTACTGG 61.043 63.158 17.60 12.27 46.01 4.00
285 412 0.602638 GTCACTGTCCGTTGGATGCA 60.603 55.000 0.00 0.00 32.73 3.96
286 413 0.324614 TCACTGTCCGTTGGATGCAT 59.675 50.000 0.00 0.00 32.73 3.96
287 414 1.552792 TCACTGTCCGTTGGATGCATA 59.447 47.619 0.00 0.00 32.73 3.14
288 415 2.170397 TCACTGTCCGTTGGATGCATAT 59.830 45.455 0.00 0.00 32.73 1.78
297 424 2.930040 GTTGGATGCATATATCGGACGG 59.070 50.000 0.00 0.00 0.00 4.79
299 426 1.134818 GGATGCATATATCGGACGGCA 60.135 52.381 0.00 0.00 35.54 5.69
301 428 0.389817 TGCATATATCGGACGGCAGC 60.390 55.000 0.00 0.00 0.00 5.25
313 440 4.459089 GGCAGCAGGGGACTCGAC 62.459 72.222 0.00 0.00 40.21 4.20
314 441 3.695606 GCAGCAGGGGACTCGACA 61.696 66.667 0.00 0.00 40.21 4.35
315 442 2.575993 CAGCAGGGGACTCGACAG 59.424 66.667 0.00 0.00 40.21 3.51
316 443 2.681778 AGCAGGGGACTCGACAGG 60.682 66.667 0.00 0.00 40.21 4.00
323 464 0.399075 GGGACTCGACAGGGGAAAAA 59.601 55.000 0.00 0.00 0.00 1.94
349 490 2.338620 CGACTGCTCGTTGGTCCA 59.661 61.111 0.00 0.00 35.00 4.02
351 492 2.029844 GACTGCTCGTTGGTCCAGC 61.030 63.158 0.00 0.00 0.00 4.85
383 558 3.851128 GGAGGGACGTGCCTAGCC 61.851 72.222 30.03 22.57 36.66 3.93
401 576 3.996614 CCGGGCATTCGGTCTTTT 58.003 55.556 0.00 0.00 44.60 2.27
402 577 1.800681 CCGGGCATTCGGTCTTTTC 59.199 57.895 0.00 0.00 44.60 2.29
403 578 1.423845 CGGGCATTCGGTCTTTTCG 59.576 57.895 0.00 0.00 0.00 3.46
404 579 1.800681 GGGCATTCGGTCTTTTCGG 59.199 57.895 0.00 0.00 0.00 4.30
406 581 0.879090 GGCATTCGGTCTTTTCGGTT 59.121 50.000 0.00 0.00 0.00 4.44
407 582 1.268625 GGCATTCGGTCTTTTCGGTTT 59.731 47.619 0.00 0.00 0.00 3.27
409 584 2.287368 GCATTCGGTCTTTTCGGTTTGT 60.287 45.455 0.00 0.00 0.00 2.83
410 585 3.794138 GCATTCGGTCTTTTCGGTTTGTT 60.794 43.478 0.00 0.00 0.00 2.83
411 586 3.678915 TTCGGTCTTTTCGGTTTGTTC 57.321 42.857 0.00 0.00 0.00 3.18
412 587 1.593933 TCGGTCTTTTCGGTTTGTTCG 59.406 47.619 0.00 0.00 0.00 3.95
413 588 1.333435 CGGTCTTTTCGGTTTGTTCGG 60.333 52.381 0.00 0.00 0.00 4.30
414 589 1.672363 GGTCTTTTCGGTTTGTTCGGT 59.328 47.619 0.00 0.00 0.00 4.69
415 590 2.097954 GGTCTTTTCGGTTTGTTCGGTT 59.902 45.455 0.00 0.00 0.00 4.44
416 591 3.357021 GTCTTTTCGGTTTGTTCGGTTC 58.643 45.455 0.00 0.00 0.00 3.62
417 592 2.030701 TCTTTTCGGTTTGTTCGGTTCG 59.969 45.455 0.00 0.00 0.00 3.95
418 593 0.656785 TTTCGGTTTGTTCGGTTCGG 59.343 50.000 0.00 0.00 0.00 4.30
421 596 0.877213 CGGTTTGTTCGGTTCGGTCT 60.877 55.000 0.00 0.00 0.00 3.85
424 599 2.097954 GGTTTGTTCGGTTCGGTCTTTT 59.902 45.455 0.00 0.00 0.00 2.27
425 600 3.427909 GGTTTGTTCGGTTCGGTCTTTTT 60.428 43.478 0.00 0.00 0.00 1.94
426 601 3.408288 TTGTTCGGTTCGGTCTTTTTG 57.592 42.857 0.00 0.00 0.00 2.44
427 602 1.671845 TGTTCGGTTCGGTCTTTTTGG 59.328 47.619 0.00 0.00 0.00 3.28
428 603 1.672363 GTTCGGTTCGGTCTTTTTGGT 59.328 47.619 0.00 0.00 0.00 3.67
429 604 1.585297 TCGGTTCGGTCTTTTTGGTC 58.415 50.000 0.00 0.00 0.00 4.02
430 605 1.139455 TCGGTTCGGTCTTTTTGGTCT 59.861 47.619 0.00 0.00 0.00 3.85
431 606 1.944709 CGGTTCGGTCTTTTTGGTCTT 59.055 47.619 0.00 0.00 0.00 3.01
432 607 2.356695 CGGTTCGGTCTTTTTGGTCTTT 59.643 45.455 0.00 0.00 0.00 2.52
433 608 3.547413 CGGTTCGGTCTTTTTGGTCTTTC 60.547 47.826 0.00 0.00 0.00 2.62
434 609 3.379057 GGTTCGGTCTTTTTGGTCTTTCA 59.621 43.478 0.00 0.00 0.00 2.69
435 610 4.142337 GGTTCGGTCTTTTTGGTCTTTCAA 60.142 41.667 0.00 0.00 0.00 2.69
436 611 5.451381 GGTTCGGTCTTTTTGGTCTTTCAAT 60.451 40.000 0.00 0.00 0.00 2.57
437 612 6.238814 GGTTCGGTCTTTTTGGTCTTTCAATA 60.239 38.462 0.00 0.00 0.00 1.90
438 613 6.945938 TCGGTCTTTTTGGTCTTTCAATAA 57.054 33.333 0.00 0.00 0.00 1.40
439 614 7.519032 TCGGTCTTTTTGGTCTTTCAATAAT 57.481 32.000 0.00 0.00 0.00 1.28
440 615 7.947282 TCGGTCTTTTTGGTCTTTCAATAATT 58.053 30.769 0.00 0.00 0.00 1.40
441 616 8.079809 TCGGTCTTTTTGGTCTTTCAATAATTC 58.920 33.333 0.00 0.00 0.00 2.17
442 617 7.060633 CGGTCTTTTTGGTCTTTCAATAATTCG 59.939 37.037 0.00 0.00 0.00 3.34
444 619 7.865889 GTCTTTTTGGTCTTTCAATAATTCGGT 59.134 33.333 0.00 0.00 0.00 4.69
445 620 8.079809 TCTTTTTGGTCTTTCAATAATTCGGTC 58.920 33.333 0.00 0.00 0.00 4.79
446 621 7.519032 TTTTGGTCTTTCAATAATTCGGTCT 57.481 32.000 0.00 0.00 0.00 3.85
447 622 7.519032 TTTGGTCTTTCAATAATTCGGTCTT 57.481 32.000 0.00 0.00 0.00 3.01
448 623 7.519032 TTGGTCTTTCAATAATTCGGTCTTT 57.481 32.000 0.00 0.00 0.00 2.52
449 624 7.141100 TGGTCTTTCAATAATTCGGTCTTTC 57.859 36.000 0.00 0.00 0.00 2.62
451 626 7.094805 TGGTCTTTCAATAATTCGGTCTTTCAG 60.095 37.037 0.00 0.00 0.00 3.02
452 627 7.119262 GGTCTTTCAATAATTCGGTCTTTCAGA 59.881 37.037 0.00 0.00 0.00 3.27
453 628 8.504005 GTCTTTCAATAATTCGGTCTTTCAGAA 58.496 33.333 0.00 0.00 35.05 3.02
454 629 9.231297 TCTTTCAATAATTCGGTCTTTCAGAAT 57.769 29.630 0.00 0.00 41.32 2.40
455 630 9.846248 CTTTCAATAATTCGGTCTTTCAGAATT 57.154 29.630 7.62 7.62 46.63 2.17
486 661 7.631915 CGAAATAATTTTGGTCTTTTCGGTT 57.368 32.000 7.50 0.00 40.78 4.44
487 662 8.067780 CGAAATAATTTTGGTCTTTTCGGTTT 57.932 30.769 7.50 0.00 40.78 3.27
488 663 8.544597 CGAAATAATTTTGGTCTTTTCGGTTTT 58.455 29.630 7.50 0.00 40.78 2.43
491 666 8.950208 ATAATTTTGGTCTTTTCGGTTTTTCA 57.050 26.923 0.00 0.00 0.00 2.69
492 667 6.656314 ATTTTGGTCTTTTCGGTTTTTCAC 57.344 33.333 0.00 0.00 0.00 3.18
493 668 5.394224 TTTGGTCTTTTCGGTTTTTCACT 57.606 34.783 0.00 0.00 0.00 3.41
494 669 6.512342 TTTGGTCTTTTCGGTTTTTCACTA 57.488 33.333 0.00 0.00 0.00 2.74
495 670 6.702716 TTGGTCTTTTCGGTTTTTCACTAT 57.297 33.333 0.00 0.00 0.00 2.12
496 671 6.702716 TGGTCTTTTCGGTTTTTCACTATT 57.297 33.333 0.00 0.00 0.00 1.73
497 672 6.731164 TGGTCTTTTCGGTTTTTCACTATTC 58.269 36.000 0.00 0.00 0.00 1.75
498 673 5.849604 GGTCTTTTCGGTTTTTCACTATTCG 59.150 40.000 0.00 0.00 0.00 3.34
499 674 5.849604 GTCTTTTCGGTTTTTCACTATTCGG 59.150 40.000 0.00 0.00 0.00 4.30
500 675 5.528320 TCTTTTCGGTTTTTCACTATTCGGT 59.472 36.000 0.00 0.00 0.00 4.69
501 676 4.996062 TTCGGTTTTTCACTATTCGGTC 57.004 40.909 0.00 0.00 0.00 4.79
502 677 4.261578 TCGGTTTTTCACTATTCGGTCT 57.738 40.909 0.00 0.00 0.00 3.85
503 678 4.634199 TCGGTTTTTCACTATTCGGTCTT 58.366 39.130 0.00 0.00 0.00 3.01
504 679 4.687483 TCGGTTTTTCACTATTCGGTCTTC 59.313 41.667 0.00 0.00 0.00 2.87
505 680 4.433805 CGGTTTTTCACTATTCGGTCTTCG 60.434 45.833 0.00 0.00 40.90 3.79
506 681 4.392216 GTTTTTCACTATTCGGTCTTCGC 58.608 43.478 0.00 0.00 39.05 4.70
507 682 3.587797 TTTCACTATTCGGTCTTCGCT 57.412 42.857 0.00 0.00 39.05 4.93
508 683 3.587797 TTCACTATTCGGTCTTCGCTT 57.412 42.857 0.00 0.00 39.05 4.68
509 684 3.587797 TCACTATTCGGTCTTCGCTTT 57.412 42.857 0.00 0.00 39.05 3.51
510 685 3.921677 TCACTATTCGGTCTTCGCTTTT 58.078 40.909 0.00 0.00 39.05 2.27
511 686 4.312443 TCACTATTCGGTCTTCGCTTTTT 58.688 39.130 0.00 0.00 39.05 1.94
512 687 5.472148 TCACTATTCGGTCTTCGCTTTTTA 58.528 37.500 0.00 0.00 39.05 1.52
513 688 5.346822 TCACTATTCGGTCTTCGCTTTTTAC 59.653 40.000 0.00 0.00 39.05 2.01
514 689 5.119588 CACTATTCGGTCTTCGCTTTTTACA 59.880 40.000 0.00 0.00 39.05 2.41
515 690 4.663636 ATTCGGTCTTCGCTTTTTACAG 57.336 40.909 0.00 0.00 39.05 2.74
516 691 3.102052 TCGGTCTTCGCTTTTTACAGT 57.898 42.857 0.00 0.00 39.05 3.55
517 692 3.460103 TCGGTCTTCGCTTTTTACAGTT 58.540 40.909 0.00 0.00 39.05 3.16
518 693 3.492011 TCGGTCTTCGCTTTTTACAGTTC 59.508 43.478 0.00 0.00 39.05 3.01
519 694 3.660904 CGGTCTTCGCTTTTTACAGTTCG 60.661 47.826 0.00 0.00 0.00 3.95
520 695 3.363673 GGTCTTCGCTTTTTACAGTTCGG 60.364 47.826 0.00 0.00 0.00 4.30
521 696 3.246936 GTCTTCGCTTTTTACAGTTCGGT 59.753 43.478 0.00 0.00 0.00 4.69
522 697 3.492011 TCTTCGCTTTTTACAGTTCGGTC 59.508 43.478 0.00 0.00 0.00 4.79
523 698 3.102052 TCGCTTTTTACAGTTCGGTCT 57.898 42.857 0.00 0.00 0.00 3.85
524 699 3.460103 TCGCTTTTTACAGTTCGGTCTT 58.540 40.909 0.00 0.00 0.00 3.01
525 700 3.492011 TCGCTTTTTACAGTTCGGTCTTC 59.508 43.478 0.00 0.00 0.00 2.87
526 701 3.660904 CGCTTTTTACAGTTCGGTCTTCG 60.661 47.826 0.00 0.00 40.90 3.79
527 702 3.363673 GCTTTTTACAGTTCGGTCTTCGG 60.364 47.826 0.00 0.00 39.77 4.30
528 703 3.457610 TTTTACAGTTCGGTCTTCGGT 57.542 42.857 0.00 0.00 39.77 4.69
529 704 2.712057 TTACAGTTCGGTCTTCGGTC 57.288 50.000 0.00 0.00 39.77 4.79
530 705 0.883833 TACAGTTCGGTCTTCGGTCC 59.116 55.000 0.00 0.00 39.77 4.46
531 706 1.080025 CAGTTCGGTCTTCGGTCCC 60.080 63.158 0.00 0.00 39.77 4.46
532 707 2.126189 GTTCGGTCTTCGGTCCCG 60.126 66.667 0.00 0.00 43.03 5.14
544 719 1.684983 TCGGTCCCGATCAAATAGACC 59.315 52.381 3.90 0.00 44.01 3.85
545 720 1.411246 CGGTCCCGATCAAATAGACCA 59.589 52.381 0.00 0.00 46.00 4.02
546 721 2.159014 CGGTCCCGATCAAATAGACCAA 60.159 50.000 0.00 0.00 46.00 3.67
547 722 3.680475 CGGTCCCGATCAAATAGACCAAA 60.680 47.826 0.00 0.00 46.00 3.28
548 723 4.461198 GGTCCCGATCAAATAGACCAAAT 58.539 43.478 10.22 0.00 45.20 2.32
549 724 4.887655 GGTCCCGATCAAATAGACCAAATT 59.112 41.667 10.22 0.00 45.20 1.82
550 725 6.059484 GGTCCCGATCAAATAGACCAAATTA 58.941 40.000 10.22 0.00 45.20 1.40
551 726 6.544564 GGTCCCGATCAAATAGACCAAATTAA 59.455 38.462 10.22 0.00 45.20 1.40
552 727 7.230712 GGTCCCGATCAAATAGACCAAATTAAT 59.769 37.037 10.22 0.00 45.20 1.40
553 728 9.280174 GTCCCGATCAAATAGACCAAATTAATA 57.720 33.333 0.00 0.00 0.00 0.98
590 765 1.098050 ATGCCGCTGAACCTGAATTC 58.902 50.000 0.00 0.00 0.00 2.17
608 783 3.973206 TTCTGAGAGGGAAATTGCGTA 57.027 42.857 0.00 0.00 0.00 4.42
640 815 1.372997 CCGTGTCGGTCTCAACAGG 60.373 63.158 0.00 0.00 42.73 4.00
641 816 1.658114 CGTGTCGGTCTCAACAGGA 59.342 57.895 0.00 0.00 34.12 3.86
642 817 0.031585 CGTGTCGGTCTCAACAGGAA 59.968 55.000 0.00 0.00 34.12 3.36
643 818 1.336887 CGTGTCGGTCTCAACAGGAAT 60.337 52.381 0.00 0.00 34.12 3.01
664 839 4.292186 TGAATATATTCCTCCAGCCAGC 57.708 45.455 20.29 0.00 35.97 4.85
666 841 2.422939 TATATTCCTCCAGCCAGCCT 57.577 50.000 0.00 0.00 0.00 4.58
670 845 3.077556 CCTCCAGCCAGCCTACGT 61.078 66.667 0.00 0.00 0.00 3.57
678 853 2.036475 CAGCCAGCCTACGTTGATAGAT 59.964 50.000 0.00 0.00 0.00 1.98
680 855 4.081972 CAGCCAGCCTACGTTGATAGATAT 60.082 45.833 0.00 0.00 0.00 1.63
687 862 7.277319 CAGCCTACGTTGATAGATATAGACGTA 59.723 40.741 14.41 14.41 42.73 3.57
691 866 7.824704 ACGTTGATAGATATAGACGTACGAT 57.175 36.000 24.41 12.52 41.29 3.73
695 870 6.271566 TGATAGATATAGACGTACGATCGCT 58.728 40.000 24.41 14.87 0.00 4.93
698 873 5.649557 AGATATAGACGTACGATCGCTACT 58.350 41.667 24.41 10.37 0.00 2.57
712 887 1.263752 CGCTACTACTCCTAGGTTCGC 59.736 57.143 9.08 2.69 0.00 4.70
718 893 0.810016 ACTCCTAGGTTCGCTTCGAC 59.190 55.000 9.08 0.00 34.89 4.20
719 894 1.096416 CTCCTAGGTTCGCTTCGACT 58.904 55.000 9.08 0.00 34.89 4.18
725 900 1.061485 GGTTCGCTTCGACTTGTCTC 58.939 55.000 0.00 0.00 34.89 3.36
728 903 2.795175 TCGCTTCGACTTGTCTCTTT 57.205 45.000 0.00 0.00 0.00 2.52
731 906 3.501062 TCGCTTCGACTTGTCTCTTTCTA 59.499 43.478 0.00 0.00 0.00 2.10
732 907 4.023450 TCGCTTCGACTTGTCTCTTTCTAA 60.023 41.667 0.00 0.00 0.00 2.10
761 936 2.555199 CAGTTTGACTCGATCCATCCC 58.445 52.381 0.00 0.00 0.00 3.85
762 937 2.169352 CAGTTTGACTCGATCCATCCCT 59.831 50.000 0.00 0.00 0.00 4.20
763 938 2.169352 AGTTTGACTCGATCCATCCCTG 59.831 50.000 0.00 0.00 0.00 4.45
764 939 0.465705 TTGACTCGATCCATCCCTGC 59.534 55.000 0.00 0.00 0.00 4.85
765 940 0.397675 TGACTCGATCCATCCCTGCT 60.398 55.000 0.00 0.00 0.00 4.24
766 941 0.755686 GACTCGATCCATCCCTGCTT 59.244 55.000 0.00 0.00 0.00 3.91
767 942 1.139853 GACTCGATCCATCCCTGCTTT 59.860 52.381 0.00 0.00 0.00 3.51
783 958 0.940991 CTTTTGCTTGGCGCTTCCAC 60.941 55.000 7.64 0.00 46.55 4.02
795 970 3.545426 GGCGCTTCCACGAAATTATACAC 60.545 47.826 7.64 0.00 34.06 2.90
801 976 7.433131 CGCTTCCACGAAATTATACACTACTTA 59.567 37.037 0.00 0.00 34.06 2.24
816 991 7.865706 ACACTACTTAAGGAATATTTGCCAG 57.134 36.000 7.53 0.00 0.00 4.85
817 992 6.828785 ACACTACTTAAGGAATATTTGCCAGG 59.171 38.462 7.53 0.00 0.00 4.45
818 993 6.828785 CACTACTTAAGGAATATTTGCCAGGT 59.171 38.462 7.53 0.00 0.00 4.00
819 994 7.012421 CACTACTTAAGGAATATTTGCCAGGTC 59.988 40.741 7.53 0.00 0.00 3.85
820 995 5.826643 ACTTAAGGAATATTTGCCAGGTCA 58.173 37.500 7.53 0.00 0.00 4.02
821 996 5.888161 ACTTAAGGAATATTTGCCAGGTCAG 59.112 40.000 7.53 0.00 0.00 3.51
822 997 4.591321 AAGGAATATTTGCCAGGTCAGA 57.409 40.909 0.00 0.00 0.00 3.27
823 998 4.162040 AGGAATATTTGCCAGGTCAGAG 57.838 45.455 0.00 0.00 0.00 3.35
824 999 3.117738 AGGAATATTTGCCAGGTCAGAGG 60.118 47.826 0.00 0.00 0.00 3.69
825 1000 3.372025 GGAATATTTGCCAGGTCAGAGGT 60.372 47.826 0.00 0.00 0.00 3.85
826 1001 3.567478 ATATTTGCCAGGTCAGAGGTC 57.433 47.619 0.00 0.00 0.00 3.85
827 1002 0.329596 ATTTGCCAGGTCAGAGGTCC 59.670 55.000 0.00 0.00 0.00 4.46
828 1003 0.768221 TTTGCCAGGTCAGAGGTCCT 60.768 55.000 0.00 0.00 32.40 3.85
829 1004 0.768221 TTGCCAGGTCAGAGGTCCTT 60.768 55.000 0.00 0.00 29.51 3.36
830 1005 1.194781 TGCCAGGTCAGAGGTCCTTC 61.195 60.000 0.00 0.00 29.51 3.46
831 1006 0.907230 GCCAGGTCAGAGGTCCTTCT 60.907 60.000 0.00 0.00 29.51 2.85
832 1007 1.650528 CCAGGTCAGAGGTCCTTCTT 58.349 55.000 0.00 0.00 29.51 2.52
833 1008 1.981495 CCAGGTCAGAGGTCCTTCTTT 59.019 52.381 0.00 0.00 29.51 2.52
834 1009 2.373502 CCAGGTCAGAGGTCCTTCTTTT 59.626 50.000 0.00 0.00 29.51 2.27
835 1010 3.406764 CAGGTCAGAGGTCCTTCTTTTG 58.593 50.000 0.00 0.00 29.51 2.44
836 1011 2.373502 AGGTCAGAGGTCCTTCTTTTGG 59.626 50.000 0.00 0.00 0.00 3.28
837 1012 2.106684 GGTCAGAGGTCCTTCTTTTGGT 59.893 50.000 0.00 0.00 0.00 3.67
838 1013 3.142174 GTCAGAGGTCCTTCTTTTGGTG 58.858 50.000 0.00 0.00 0.00 4.17
839 1014 3.045634 TCAGAGGTCCTTCTTTTGGTGA 58.954 45.455 0.00 0.00 0.00 4.02
840 1015 3.071602 TCAGAGGTCCTTCTTTTGGTGAG 59.928 47.826 0.00 0.00 0.00 3.51
841 1016 3.049344 AGAGGTCCTTCTTTTGGTGAGT 58.951 45.455 0.00 0.00 0.00 3.41
842 1017 3.459969 AGAGGTCCTTCTTTTGGTGAGTT 59.540 43.478 0.00 0.00 0.00 3.01
843 1018 4.079730 AGAGGTCCTTCTTTTGGTGAGTTT 60.080 41.667 0.00 0.00 0.00 2.66
844 1019 4.610333 AGGTCCTTCTTTTGGTGAGTTTT 58.390 39.130 0.00 0.00 0.00 2.43
845 1020 4.645136 AGGTCCTTCTTTTGGTGAGTTTTC 59.355 41.667 0.00 0.00 0.00 2.29
846 1021 4.645136 GGTCCTTCTTTTGGTGAGTTTTCT 59.355 41.667 0.00 0.00 0.00 2.52
847 1022 5.127194 GGTCCTTCTTTTGGTGAGTTTTCTT 59.873 40.000 0.00 0.00 0.00 2.52
848 1023 6.351033 GGTCCTTCTTTTGGTGAGTTTTCTTT 60.351 38.462 0.00 0.00 0.00 2.52
849 1024 6.531594 GTCCTTCTTTTGGTGAGTTTTCTTTG 59.468 38.462 0.00 0.00 0.00 2.77
850 1025 5.291858 CCTTCTTTTGGTGAGTTTTCTTTGC 59.708 40.000 0.00 0.00 0.00 3.68
851 1026 4.754322 TCTTTTGGTGAGTTTTCTTTGCC 58.246 39.130 0.00 0.00 0.00 4.52
852 1027 2.861462 TTGGTGAGTTTTCTTTGCCG 57.139 45.000 0.00 0.00 0.00 5.69
853 1028 2.045561 TGGTGAGTTTTCTTTGCCGA 57.954 45.000 0.00 0.00 0.00 5.54
870 1045 0.946221 CGAGCCAGGTCACAAGTCAC 60.946 60.000 0.00 0.00 0.00 3.67
890 1065 1.797025 GCGTGCAAGTCTTTCCTACT 58.203 50.000 0.59 0.00 0.00 2.57
892 1067 2.666994 GCGTGCAAGTCTTTCCTACTAC 59.333 50.000 0.59 0.00 0.00 2.73
893 1068 3.614390 GCGTGCAAGTCTTTCCTACTACT 60.614 47.826 0.59 0.00 0.00 2.57
990 1525 3.519930 GACGCGTCCTCCCTCTCC 61.520 72.222 28.61 0.00 0.00 3.71
993 1528 2.835895 GCGTCCTCCCTCTCCCTC 60.836 72.222 0.00 0.00 0.00 4.30
994 1529 2.684104 CGTCCTCCCTCTCCCTCA 59.316 66.667 0.00 0.00 0.00 3.86
1065 1600 4.135153 TTGCTCCTCGCGCTCTCC 62.135 66.667 5.56 0.00 43.27 3.71
1072 1607 2.044848 TCGCGCTCTCCTCCTTCT 60.045 61.111 5.56 0.00 0.00 2.85
1073 1608 2.058829 CTCGCGCTCTCCTCCTTCTC 62.059 65.000 5.56 0.00 0.00 2.87
1074 1609 2.811799 GCGCTCTCCTCCTTCTCC 59.188 66.667 0.00 0.00 0.00 3.71
1075 1610 1.756561 GCGCTCTCCTCCTTCTCCT 60.757 63.158 0.00 0.00 0.00 3.69
1076 1611 2.015227 GCGCTCTCCTCCTTCTCCTG 62.015 65.000 0.00 0.00 0.00 3.86
1077 1612 1.822615 GCTCTCCTCCTTCTCCTGC 59.177 63.158 0.00 0.00 0.00 4.85
1236 1777 0.325933 CCCTCAAGCTCCACATGACA 59.674 55.000 0.00 0.00 0.00 3.58
1761 2317 2.046892 CTGGAGGCCTTCACCGTG 60.047 66.667 10.69 0.00 33.69 4.94
2286 2875 2.369629 CCCGTGCTACAACGTGTCG 61.370 63.158 0.00 0.00 42.01 4.35
2463 3052 1.457346 GCAACTACCAGCAGCAGAAT 58.543 50.000 0.00 0.00 0.00 2.40
2473 3062 1.160137 GCAGCAGAATTTCCACGTCT 58.840 50.000 0.00 0.00 0.00 4.18
2475 3064 2.666619 GCAGCAGAATTTCCACGTCTTG 60.667 50.000 0.00 0.00 0.00 3.02
2489 3078 0.601558 GTCTTGTACGACCTGGAGCA 59.398 55.000 0.00 0.00 0.00 4.26
2549 3149 0.748450 TAATTAGTCCGGCCTCCGTG 59.252 55.000 0.00 0.00 46.80 4.94
2565 3165 1.662876 CCGTGCGTCCATTTTGACTTG 60.663 52.381 0.00 0.00 32.97 3.16
2582 3182 3.233507 ACTTGCTGATTGGGTTGATTGT 58.766 40.909 0.00 0.00 0.00 2.71
2598 3198 3.833650 TGATTGTTTGACCGGTAGGAGTA 59.166 43.478 7.34 0.00 41.02 2.59
2605 3205 1.885233 GACCGGTAGGAGTATGTAGGC 59.115 57.143 7.34 0.00 41.02 3.93
2635 3235 4.260170 CTGACTGGATGGGAAGAAGAAAG 58.740 47.826 0.00 0.00 0.00 2.62
2637 3237 4.350816 TGACTGGATGGGAAGAAGAAAGAA 59.649 41.667 0.00 0.00 0.00 2.52
2638 3238 4.916183 ACTGGATGGGAAGAAGAAAGAAG 58.084 43.478 0.00 0.00 0.00 2.85
2643 3243 3.756117 TGGGAAGAAGAAAGAAGGAAGC 58.244 45.455 0.00 0.00 0.00 3.86
2647 3247 4.319839 GGAAGAAGAAAGAAGGAAGCAACG 60.320 45.833 0.00 0.00 0.00 4.10
2683 3284 4.568152 AAGAAACTGGTTTGGATTGACG 57.432 40.909 3.30 0.00 32.11 4.35
2689 3290 3.315191 ACTGGTTTGGATTGACGAACAAG 59.685 43.478 0.00 0.00 42.02 3.16
2691 3292 2.621526 GGTTTGGATTGACGAACAAGGT 59.378 45.455 0.00 0.00 42.02 3.50
2692 3293 3.304458 GGTTTGGATTGACGAACAAGGTC 60.304 47.826 0.00 0.00 42.02 3.85
2698 3301 4.158025 GGATTGACGAACAAGGTCTCTCTA 59.842 45.833 0.00 0.00 42.02 2.43
2699 3302 5.336531 GGATTGACGAACAAGGTCTCTCTAA 60.337 44.000 0.00 0.00 42.02 2.10
2732 3335 3.215244 CGTTTCGATGAACTTTTGACCG 58.785 45.455 0.00 0.00 0.00 4.79
2748 3352 1.425428 CCGATTCGGCTGCTTGTTC 59.575 57.895 12.95 0.00 41.17 3.18
2798 3407 9.453325 GTTTGATTTTCGTTTTGGTGTATAGAA 57.547 29.630 0.00 0.00 0.00 2.10
2801 3410 9.619316 TGATTTTCGTTTTGGTGTATAGAAATG 57.381 29.630 0.00 0.00 0.00 2.32
2810 3419 5.487433 TGGTGTATAGAAATGTGGACTGTG 58.513 41.667 0.00 0.00 0.00 3.66
2811 3420 4.876107 GGTGTATAGAAATGTGGACTGTGG 59.124 45.833 0.00 0.00 0.00 4.17
2812 3421 5.338056 GGTGTATAGAAATGTGGACTGTGGA 60.338 44.000 0.00 0.00 0.00 4.02
2813 3422 5.812642 GTGTATAGAAATGTGGACTGTGGAG 59.187 44.000 0.00 0.00 0.00 3.86
2814 3423 5.719563 TGTATAGAAATGTGGACTGTGGAGA 59.280 40.000 0.00 0.00 0.00 3.71
2863 3478 1.067213 GTGTCTCTCTTGGTGCTCCTC 60.067 57.143 6.34 0.00 34.23 3.71
2870 3486 0.391263 CTTGGTGCTCCTCCGGTTAC 60.391 60.000 0.00 0.00 34.23 2.50
2931 3547 1.300311 TCCGTCGATGTGTGCGTTT 60.300 52.632 3.52 0.00 0.00 3.60
2932 3548 1.129809 CCGTCGATGTGTGCGTTTC 59.870 57.895 3.52 0.00 0.00 2.78
2933 3549 1.282248 CCGTCGATGTGTGCGTTTCT 61.282 55.000 3.52 0.00 0.00 2.52
2983 3599 2.551270 CACAGACGAAAGCACGGC 59.449 61.111 0.00 0.00 42.10 5.68
2984 3600 3.036084 ACAGACGAAAGCACGGCG 61.036 61.111 4.80 4.80 46.71 6.46
2985 3601 3.036084 CAGACGAAAGCACGGCGT 61.036 61.111 6.77 6.77 46.71 5.68
3015 3631 2.587753 CGTGCGGGCCGTATTGAT 60.588 61.111 28.82 0.00 0.00 2.57
3102 3776 1.466167 CGGAATGAACTGGAGCAACAG 59.534 52.381 6.16 6.16 44.03 3.16
3105 3779 0.957395 ATGAACTGGAGCAACAGCCG 60.957 55.000 7.49 0.00 42.21 5.52
3106 3780 1.598130 GAACTGGAGCAACAGCCGT 60.598 57.895 7.49 0.00 42.21 5.68
3142 3816 1.334869 GGGCCTATTGAATGAAGTGCG 59.665 52.381 0.84 0.00 0.00 5.34
3143 3817 2.288666 GGCCTATTGAATGAAGTGCGA 58.711 47.619 0.00 0.00 0.00 5.10
3162 3836 3.733960 GCCGGGAAGCGAAACCAC 61.734 66.667 2.18 0.00 0.00 4.16
3163 3837 3.419759 CCGGGAAGCGAAACCACG 61.420 66.667 0.00 0.00 0.00 4.94
3248 5613 2.402388 CGATCCGTACGTGCGAGT 59.598 61.111 27.81 14.83 0.00 4.18
3346 5723 1.567537 CAACGCGTTGGTACACCTG 59.432 57.895 37.79 15.24 39.29 4.00
3347 5724 2.248835 AACGCGTTGGTACACCTGC 61.249 57.895 26.00 0.92 39.29 4.85
3348 5725 2.663520 CGCGTTGGTACACCTGCA 60.664 61.111 0.00 0.00 39.29 4.41
3349 5726 2.032634 CGCGTTGGTACACCTGCAT 61.033 57.895 0.00 0.00 39.29 3.96
3350 5727 0.738063 CGCGTTGGTACACCTGCATA 60.738 55.000 0.00 0.00 39.29 3.14
3351 5728 1.006832 GCGTTGGTACACCTGCATAG 58.993 55.000 0.00 0.00 39.29 2.23
3352 5729 1.006832 CGTTGGTACACCTGCATAGC 58.993 55.000 0.00 0.00 39.29 2.97
3353 5730 1.674519 CGTTGGTACACCTGCATAGCA 60.675 52.381 0.00 0.00 39.29 3.49
3354 5731 2.643551 GTTGGTACACCTGCATAGCAT 58.356 47.619 0.00 0.00 39.29 3.79
3355 5732 2.614057 GTTGGTACACCTGCATAGCATC 59.386 50.000 0.00 0.00 39.29 3.91
3356 5733 1.202521 TGGTACACCTGCATAGCATCG 60.203 52.381 0.00 0.00 38.13 3.84
3357 5734 0.861837 GTACACCTGCATAGCATCGC 59.138 55.000 0.00 0.00 38.13 4.58
3416 5798 0.321346 TCTGCTGCTTCATCGGTGAA 59.679 50.000 11.31 11.31 41.89 3.18
3468 5850 3.982372 TTGCCTCGATCGGACGCAC 62.982 63.158 16.41 0.09 36.59 5.34
3488 5870 4.261405 GCACCAGCAGAGAGTACATACTAG 60.261 50.000 0.00 0.00 41.58 2.57
3489 5871 4.884744 CACCAGCAGAGAGTACATACTAGT 59.115 45.833 0.00 0.00 36.50 2.57
3490 5872 6.056236 CACCAGCAGAGAGTACATACTAGTA 58.944 44.000 4.77 4.77 36.50 1.82
3491 5873 6.017770 CACCAGCAGAGAGTACATACTAGTAC 60.018 46.154 4.31 0.00 43.61 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.760569 CCTCGCAAAAACAATTTGTTATAGTTT 58.239 29.630 14.81 9.03 40.14 2.66
64 65 7.430441 ACCTCGCAAAAACAATTTGTTATAGT 58.570 30.769 14.81 0.00 40.14 2.12
67 68 7.923878 AGTTACCTCGCAAAAACAATTTGTTAT 59.076 29.630 14.81 5.13 40.14 1.89
68 69 7.259161 AGTTACCTCGCAAAAACAATTTGTTA 58.741 30.769 14.81 0.00 40.14 2.41
69 70 6.103330 AGTTACCTCGCAAAAACAATTTGTT 58.897 32.000 8.97 8.97 43.41 2.83
70 71 5.656480 AGTTACCTCGCAAAAACAATTTGT 58.344 33.333 0.00 0.00 0.00 2.83
71 72 7.867445 ATAGTTACCTCGCAAAAACAATTTG 57.133 32.000 0.00 0.00 0.00 2.32
72 73 9.401873 GTTATAGTTACCTCGCAAAAACAATTT 57.598 29.630 0.00 0.00 0.00 1.82
73 74 8.569641 TGTTATAGTTACCTCGCAAAAACAATT 58.430 29.630 0.00 0.00 0.00 2.32
74 75 8.101654 TGTTATAGTTACCTCGCAAAAACAAT 57.898 30.769 0.00 0.00 0.00 2.71
75 76 7.441760 TCTGTTATAGTTACCTCGCAAAAACAA 59.558 33.333 0.00 0.00 0.00 2.83
76 77 6.930164 TCTGTTATAGTTACCTCGCAAAAACA 59.070 34.615 0.00 0.00 0.00 2.83
77 78 7.355332 TCTGTTATAGTTACCTCGCAAAAAC 57.645 36.000 0.00 0.00 0.00 2.43
78 79 8.447833 CAATCTGTTATAGTTACCTCGCAAAAA 58.552 33.333 0.00 0.00 0.00 1.94
79 80 7.820386 TCAATCTGTTATAGTTACCTCGCAAAA 59.180 33.333 0.00 0.00 0.00 2.44
80 81 7.324935 TCAATCTGTTATAGTTACCTCGCAAA 58.675 34.615 0.00 0.00 0.00 3.68
81 82 6.869695 TCAATCTGTTATAGTTACCTCGCAA 58.130 36.000 0.00 0.00 0.00 4.85
82 83 6.459670 TCAATCTGTTATAGTTACCTCGCA 57.540 37.500 0.00 0.00 0.00 5.10
83 84 7.766219 TTTCAATCTGTTATAGTTACCTCGC 57.234 36.000 0.00 0.00 0.00 5.03
84 85 8.276325 GCATTTCAATCTGTTATAGTTACCTCG 58.724 37.037 0.00 0.00 0.00 4.63
85 86 8.560374 GGCATTTCAATCTGTTATAGTTACCTC 58.440 37.037 0.00 0.00 0.00 3.85
86 87 8.052748 TGGCATTTCAATCTGTTATAGTTACCT 58.947 33.333 0.00 0.00 0.00 3.08
87 88 8.220755 TGGCATTTCAATCTGTTATAGTTACC 57.779 34.615 0.00 0.00 0.00 2.85
88 89 9.109393 TCTGGCATTTCAATCTGTTATAGTTAC 57.891 33.333 0.00 0.00 0.00 2.50
89 90 9.109393 GTCTGGCATTTCAATCTGTTATAGTTA 57.891 33.333 0.00 0.00 0.00 2.24
90 91 7.201644 CGTCTGGCATTTCAATCTGTTATAGTT 60.202 37.037 0.00 0.00 0.00 2.24
120 121 1.300542 CGTGCATTGCCCGGTTTTT 60.301 52.632 5.56 0.00 0.00 1.94
121 122 2.338257 CGTGCATTGCCCGGTTTT 59.662 55.556 5.56 0.00 0.00 2.43
145 146 7.429636 TGGCAGTACTATTTTCTACAAACAC 57.570 36.000 0.00 0.00 0.00 3.32
147 148 9.983804 GTTATGGCAGTACTATTTTCTACAAAC 57.016 33.333 0.00 0.00 0.00 2.93
148 149 8.875803 CGTTATGGCAGTACTATTTTCTACAAA 58.124 33.333 0.00 0.00 0.00 2.83
151 152 7.998753 ACGTTATGGCAGTACTATTTTCTAC 57.001 36.000 0.00 0.00 0.00 2.59
153 154 6.694411 CGTACGTTATGGCAGTACTATTTTCT 59.306 38.462 7.22 0.00 38.73 2.52
155 156 6.563422 TCGTACGTTATGGCAGTACTATTTT 58.437 36.000 16.05 0.00 38.73 1.82
156 157 6.135290 TCGTACGTTATGGCAGTACTATTT 57.865 37.500 16.05 0.00 38.73 1.40
157 158 5.756195 TCGTACGTTATGGCAGTACTATT 57.244 39.130 16.05 0.00 38.73 1.73
158 159 5.756195 TTCGTACGTTATGGCAGTACTAT 57.244 39.130 16.05 0.00 38.73 2.12
159 160 5.756195 ATTCGTACGTTATGGCAGTACTA 57.244 39.130 16.05 0.48 38.73 1.82
160 161 4.644103 ATTCGTACGTTATGGCAGTACT 57.356 40.909 16.05 0.00 38.73 2.73
161 162 5.707411 AAATTCGTACGTTATGGCAGTAC 57.293 39.130 16.05 5.05 37.83 2.73
163 164 4.269363 GCTAAATTCGTACGTTATGGCAGT 59.731 41.667 16.05 0.00 0.00 4.40
166 167 4.505191 TCAGCTAAATTCGTACGTTATGGC 59.495 41.667 16.05 13.04 0.00 4.40
167 168 6.398621 CGATCAGCTAAATTCGTACGTTATGG 60.399 42.308 16.05 3.90 0.00 2.74
168 169 6.358822 TCGATCAGCTAAATTCGTACGTTATG 59.641 38.462 16.05 3.68 33.52 1.90
169 170 6.359087 GTCGATCAGCTAAATTCGTACGTTAT 59.641 38.462 16.05 7.45 33.52 1.89
170 171 5.678483 GTCGATCAGCTAAATTCGTACGTTA 59.322 40.000 16.05 5.93 33.52 3.18
172 173 4.033684 GTCGATCAGCTAAATTCGTACGT 58.966 43.478 16.05 0.00 33.52 3.57
173 174 3.421231 GGTCGATCAGCTAAATTCGTACG 59.579 47.826 9.53 9.53 33.52 3.67
175 176 3.549423 CCGGTCGATCAGCTAAATTCGTA 60.549 47.826 0.00 0.00 33.52 3.43
176 177 2.460918 CGGTCGATCAGCTAAATTCGT 58.539 47.619 0.00 0.00 33.52 3.85
177 178 1.787155 CCGGTCGATCAGCTAAATTCG 59.213 52.381 0.00 0.00 0.00 3.34
178 179 2.540101 CACCGGTCGATCAGCTAAATTC 59.460 50.000 2.59 0.00 0.00 2.17
179 180 2.550978 CACCGGTCGATCAGCTAAATT 58.449 47.619 2.59 0.00 0.00 1.82
180 181 1.806623 GCACCGGTCGATCAGCTAAAT 60.807 52.381 2.59 0.00 0.00 1.40
181 182 0.459585 GCACCGGTCGATCAGCTAAA 60.460 55.000 2.59 0.00 0.00 1.85
182 183 1.141019 GCACCGGTCGATCAGCTAA 59.859 57.895 2.59 0.00 0.00 3.09
183 184 2.805546 GCACCGGTCGATCAGCTA 59.194 61.111 2.59 0.00 0.00 3.32
184 185 4.498520 CGCACCGGTCGATCAGCT 62.499 66.667 17.91 0.00 0.00 4.24
203 204 2.042831 GCCAGTAGCACTGCAAGGG 61.043 63.158 3.30 0.49 44.63 3.95
204 205 2.042831 GGCCAGTAGCACTGCAAGG 61.043 63.158 0.00 0.54 44.63 3.61
205 206 2.393768 CGGCCAGTAGCACTGCAAG 61.394 63.158 2.24 0.00 44.63 4.01
206 207 2.358615 CGGCCAGTAGCACTGCAA 60.359 61.111 2.24 0.00 44.63 4.08
242 366 3.851845 TTCCTTCGGTCGTGGCGTG 62.852 63.158 0.00 0.00 0.00 5.34
246 370 1.798813 CTCTTTTTCCTTCGGTCGTGG 59.201 52.381 0.00 0.00 0.00 4.94
248 372 2.101917 TGACTCTTTTTCCTTCGGTCGT 59.898 45.455 0.00 0.00 0.00 4.34
250 374 3.495001 CAGTGACTCTTTTTCCTTCGGTC 59.505 47.826 0.00 0.00 0.00 4.79
251 375 3.118371 ACAGTGACTCTTTTTCCTTCGGT 60.118 43.478 0.00 0.00 0.00 4.69
254 381 3.495001 CGGACAGTGACTCTTTTTCCTTC 59.505 47.826 0.00 0.00 0.00 3.46
261 388 1.760613 TCCAACGGACAGTGACTCTTT 59.239 47.619 0.00 0.00 0.00 2.52
267 394 0.324614 ATGCATCCAACGGACAGTGA 59.675 50.000 0.00 0.00 32.98 3.41
269 396 4.569943 GATATATGCATCCAACGGACAGT 58.430 43.478 0.19 0.00 32.98 3.55
271 398 3.584834 CGATATATGCATCCAACGGACA 58.415 45.455 0.19 0.00 32.98 4.02
273 400 2.829120 TCCGATATATGCATCCAACGGA 59.171 45.455 23.81 23.81 44.37 4.69
285 412 0.532573 CCTGCTGCCGTCCGATATAT 59.467 55.000 0.00 0.00 0.00 0.86
286 413 1.532604 CCCTGCTGCCGTCCGATATA 61.533 60.000 0.00 0.00 0.00 0.86
287 414 2.737180 CCTGCTGCCGTCCGATAT 59.263 61.111 0.00 0.00 0.00 1.63
288 415 3.536917 CCCTGCTGCCGTCCGATA 61.537 66.667 0.00 0.00 0.00 2.92
297 424 3.655810 CTGTCGAGTCCCCTGCTGC 62.656 68.421 0.00 0.00 0.00 5.25
299 426 2.681778 CCTGTCGAGTCCCCTGCT 60.682 66.667 0.00 0.00 0.00 4.24
301 428 3.077556 CCCCTGTCGAGTCCCCTG 61.078 72.222 0.00 0.00 0.00 4.45
308 435 2.037251 TGAGACTTTTTCCCCTGTCGAG 59.963 50.000 0.00 0.00 34.92 4.04
311 438 2.554462 GCTTGAGACTTTTTCCCCTGTC 59.446 50.000 0.00 0.00 0.00 3.51
313 440 1.537202 CGCTTGAGACTTTTTCCCCTG 59.463 52.381 0.00 0.00 0.00 4.45
314 441 1.420138 TCGCTTGAGACTTTTTCCCCT 59.580 47.619 0.00 0.00 0.00 4.79
315 442 1.535896 GTCGCTTGAGACTTTTTCCCC 59.464 52.381 0.00 0.00 38.09 4.81
316 443 2.971430 GTCGCTTGAGACTTTTTCCC 57.029 50.000 0.00 0.00 38.09 3.97
366 541 3.851128 GGCTAGGCACGTCCCTCC 61.851 72.222 0.00 0.00 36.41 4.30
386 561 0.958876 ACCGAAAAGACCGAATGCCC 60.959 55.000 0.00 0.00 0.00 5.36
387 562 0.879090 AACCGAAAAGACCGAATGCC 59.121 50.000 0.00 0.00 0.00 4.40
388 563 2.287368 ACAAACCGAAAAGACCGAATGC 60.287 45.455 0.00 0.00 0.00 3.56
389 564 3.619233 ACAAACCGAAAAGACCGAATG 57.381 42.857 0.00 0.00 0.00 2.67
390 565 3.303526 CGAACAAACCGAAAAGACCGAAT 60.304 43.478 0.00 0.00 0.00 3.34
391 566 2.030701 CGAACAAACCGAAAAGACCGAA 59.969 45.455 0.00 0.00 0.00 4.30
394 569 1.672363 ACCGAACAAACCGAAAAGACC 59.328 47.619 0.00 0.00 0.00 3.85
395 570 3.357021 GAACCGAACAAACCGAAAAGAC 58.643 45.455 0.00 0.00 0.00 3.01
396 571 2.030701 CGAACCGAACAAACCGAAAAGA 59.969 45.455 0.00 0.00 0.00 2.52
397 572 2.368685 CGAACCGAACAAACCGAAAAG 58.631 47.619 0.00 0.00 0.00 2.27
399 574 0.656785 CCGAACCGAACAAACCGAAA 59.343 50.000 0.00 0.00 0.00 3.46
400 575 0.461693 ACCGAACCGAACAAACCGAA 60.462 50.000 0.00 0.00 0.00 4.30
401 576 0.875474 GACCGAACCGAACAAACCGA 60.875 55.000 0.00 0.00 0.00 4.69
402 577 0.877213 AGACCGAACCGAACAAACCG 60.877 55.000 0.00 0.00 0.00 4.44
403 578 1.302366 AAGACCGAACCGAACAAACC 58.698 50.000 0.00 0.00 0.00 3.27
404 579 3.409851 AAAAGACCGAACCGAACAAAC 57.590 42.857 0.00 0.00 0.00 2.93
406 581 2.097791 CCAAAAAGACCGAACCGAACAA 59.902 45.455 0.00 0.00 0.00 2.83
407 582 1.671845 CCAAAAAGACCGAACCGAACA 59.328 47.619 0.00 0.00 0.00 3.18
409 584 1.941975 GACCAAAAAGACCGAACCGAA 59.058 47.619 0.00 0.00 0.00 4.30
410 585 1.139455 AGACCAAAAAGACCGAACCGA 59.861 47.619 0.00 0.00 0.00 4.69
411 586 1.589803 AGACCAAAAAGACCGAACCG 58.410 50.000 0.00 0.00 0.00 4.44
412 587 3.379057 TGAAAGACCAAAAAGACCGAACC 59.621 43.478 0.00 0.00 0.00 3.62
413 588 4.625972 TGAAAGACCAAAAAGACCGAAC 57.374 40.909 0.00 0.00 0.00 3.95
414 589 5.845391 ATTGAAAGACCAAAAAGACCGAA 57.155 34.783 0.00 0.00 0.00 4.30
415 590 6.945938 TTATTGAAAGACCAAAAAGACCGA 57.054 33.333 0.00 0.00 0.00 4.69
416 591 7.060633 CGAATTATTGAAAGACCAAAAAGACCG 59.939 37.037 0.00 0.00 0.00 4.79
417 592 7.328493 CCGAATTATTGAAAGACCAAAAAGACC 59.672 37.037 0.00 0.00 0.00 3.85
418 593 7.865889 ACCGAATTATTGAAAGACCAAAAAGAC 59.134 33.333 0.00 0.00 0.00 3.01
421 596 7.947282 AGACCGAATTATTGAAAGACCAAAAA 58.053 30.769 0.00 0.00 0.00 1.94
424 599 7.229707 TGAAAGACCGAATTATTGAAAGACCAA 59.770 33.333 0.00 0.00 0.00 3.67
425 600 6.712998 TGAAAGACCGAATTATTGAAAGACCA 59.287 34.615 0.00 0.00 0.00 4.02
426 601 7.119262 TCTGAAAGACCGAATTATTGAAAGACC 59.881 37.037 0.00 0.00 38.67 3.85
427 602 8.029642 TCTGAAAGACCGAATTATTGAAAGAC 57.970 34.615 0.00 0.00 38.67 3.01
458 633 7.081976 CGAAAAGACCAAAATTATTTCGGTCT 58.918 34.615 20.91 20.91 46.87 3.85
459 634 7.260722 CGAAAAGACCAAAATTATTTCGGTC 57.739 36.000 17.42 17.42 43.00 4.79
462 637 7.631915 AACCGAAAAGACCAAAATTATTTCG 57.368 32.000 10.49 10.49 45.03 3.46
465 640 9.384764 TGAAAAACCGAAAAGACCAAAATTATT 57.615 25.926 0.00 0.00 0.00 1.40
466 641 8.822855 GTGAAAAACCGAAAAGACCAAAATTAT 58.177 29.630 0.00 0.00 0.00 1.28
467 642 8.035984 AGTGAAAAACCGAAAAGACCAAAATTA 58.964 29.630 0.00 0.00 0.00 1.40
468 643 6.876789 AGTGAAAAACCGAAAAGACCAAAATT 59.123 30.769 0.00 0.00 0.00 1.82
469 644 6.403049 AGTGAAAAACCGAAAAGACCAAAAT 58.597 32.000 0.00 0.00 0.00 1.82
470 645 5.785243 AGTGAAAAACCGAAAAGACCAAAA 58.215 33.333 0.00 0.00 0.00 2.44
471 646 5.394224 AGTGAAAAACCGAAAAGACCAAA 57.606 34.783 0.00 0.00 0.00 3.28
472 647 6.702716 ATAGTGAAAAACCGAAAAGACCAA 57.297 33.333 0.00 0.00 0.00 3.67
473 648 6.512091 CGAATAGTGAAAAACCGAAAAGACCA 60.512 38.462 0.00 0.00 0.00 4.02
474 649 5.849604 CGAATAGTGAAAAACCGAAAAGACC 59.150 40.000 0.00 0.00 0.00 3.85
475 650 5.849604 CCGAATAGTGAAAAACCGAAAAGAC 59.150 40.000 0.00 0.00 0.00 3.01
476 651 5.528320 ACCGAATAGTGAAAAACCGAAAAGA 59.472 36.000 0.00 0.00 0.00 2.52
477 652 5.754778 ACCGAATAGTGAAAAACCGAAAAG 58.245 37.500 0.00 0.00 0.00 2.27
478 653 5.528320 AGACCGAATAGTGAAAAACCGAAAA 59.472 36.000 0.00 0.00 0.00 2.29
479 654 5.058490 AGACCGAATAGTGAAAAACCGAAA 58.942 37.500 0.00 0.00 0.00 3.46
480 655 4.634199 AGACCGAATAGTGAAAAACCGAA 58.366 39.130 0.00 0.00 0.00 4.30
481 656 4.261578 AGACCGAATAGTGAAAAACCGA 57.738 40.909 0.00 0.00 0.00 4.69
482 657 4.433805 CGAAGACCGAATAGTGAAAAACCG 60.434 45.833 0.00 0.00 41.76 4.44
483 658 4.668431 GCGAAGACCGAATAGTGAAAAACC 60.668 45.833 0.00 0.00 41.76 3.27
484 659 4.151867 AGCGAAGACCGAATAGTGAAAAAC 59.848 41.667 0.00 0.00 41.76 2.43
485 660 4.312443 AGCGAAGACCGAATAGTGAAAAA 58.688 39.130 0.00 0.00 41.76 1.94
486 661 3.921677 AGCGAAGACCGAATAGTGAAAA 58.078 40.909 0.00 0.00 41.76 2.29
487 662 3.587797 AGCGAAGACCGAATAGTGAAA 57.412 42.857 0.00 0.00 41.76 2.69
488 663 3.587797 AAGCGAAGACCGAATAGTGAA 57.412 42.857 0.00 0.00 41.76 3.18
489 664 3.587797 AAAGCGAAGACCGAATAGTGA 57.412 42.857 0.00 0.00 41.76 3.41
490 665 4.663636 AAAAAGCGAAGACCGAATAGTG 57.336 40.909 0.00 0.00 41.76 2.74
491 666 5.232463 TGTAAAAAGCGAAGACCGAATAGT 58.768 37.500 0.00 0.00 41.76 2.12
492 667 5.347907 ACTGTAAAAAGCGAAGACCGAATAG 59.652 40.000 0.00 0.00 41.76 1.73
493 668 5.232463 ACTGTAAAAAGCGAAGACCGAATA 58.768 37.500 0.00 0.00 41.76 1.75
494 669 4.062991 ACTGTAAAAAGCGAAGACCGAAT 58.937 39.130 0.00 0.00 41.76 3.34
495 670 3.460103 ACTGTAAAAAGCGAAGACCGAA 58.540 40.909 0.00 0.00 41.76 4.30
496 671 3.102052 ACTGTAAAAAGCGAAGACCGA 57.898 42.857 0.00 0.00 41.76 4.69
497 672 3.660904 CGAACTGTAAAAAGCGAAGACCG 60.661 47.826 0.00 0.00 42.21 4.79
498 673 3.363673 CCGAACTGTAAAAAGCGAAGACC 60.364 47.826 0.00 0.00 0.00 3.85
499 674 3.246936 ACCGAACTGTAAAAAGCGAAGAC 59.753 43.478 0.00 0.00 0.00 3.01
500 675 3.460103 ACCGAACTGTAAAAAGCGAAGA 58.540 40.909 0.00 0.00 0.00 2.87
501 676 3.493503 AGACCGAACTGTAAAAAGCGAAG 59.506 43.478 0.00 0.00 0.00 3.79
502 677 3.460103 AGACCGAACTGTAAAAAGCGAA 58.540 40.909 0.00 0.00 0.00 4.70
503 678 3.102052 AGACCGAACTGTAAAAAGCGA 57.898 42.857 0.00 0.00 0.00 4.93
504 679 3.660904 CGAAGACCGAACTGTAAAAAGCG 60.661 47.826 0.00 0.00 41.76 4.68
505 680 3.363673 CCGAAGACCGAACTGTAAAAAGC 60.364 47.826 0.00 0.00 41.76 3.51
506 681 3.805971 ACCGAAGACCGAACTGTAAAAAG 59.194 43.478 0.00 0.00 41.76 2.27
507 682 3.795877 ACCGAAGACCGAACTGTAAAAA 58.204 40.909 0.00 0.00 41.76 1.94
508 683 3.383761 GACCGAAGACCGAACTGTAAAA 58.616 45.455 0.00 0.00 41.76 1.52
509 684 2.288395 GGACCGAAGACCGAACTGTAAA 60.288 50.000 0.00 0.00 41.76 2.01
510 685 1.270550 GGACCGAAGACCGAACTGTAA 59.729 52.381 0.00 0.00 41.76 2.41
511 686 0.883833 GGACCGAAGACCGAACTGTA 59.116 55.000 0.00 0.00 41.76 2.74
512 687 1.664306 GGACCGAAGACCGAACTGT 59.336 57.895 0.00 0.00 41.76 3.55
513 688 1.080025 GGGACCGAAGACCGAACTG 60.080 63.158 0.00 0.00 41.76 3.16
514 689 3.374332 GGGACCGAAGACCGAACT 58.626 61.111 0.00 0.00 41.76 3.01
525 700 1.411246 TGGTCTATTTGATCGGGACCG 59.589 52.381 3.96 3.96 46.52 4.79
526 701 3.553828 TTGGTCTATTTGATCGGGACC 57.446 47.619 12.37 12.37 44.57 4.46
527 702 7.562454 TTAATTTGGTCTATTTGATCGGGAC 57.438 36.000 0.00 0.00 0.00 4.46
537 712 9.887406 CGCCGTTTTATATTAATTTGGTCTATT 57.113 29.630 0.00 0.00 0.00 1.73
538 713 8.019094 GCGCCGTTTTATATTAATTTGGTCTAT 58.981 33.333 0.00 0.00 0.00 1.98
539 714 7.354257 GCGCCGTTTTATATTAATTTGGTCTA 58.646 34.615 0.00 0.00 0.00 2.59
540 715 6.203647 GCGCCGTTTTATATTAATTTGGTCT 58.796 36.000 0.00 0.00 0.00 3.85
541 716 5.114423 CGCGCCGTTTTATATTAATTTGGTC 59.886 40.000 0.00 0.00 0.00 4.02
542 717 4.971220 CGCGCCGTTTTATATTAATTTGGT 59.029 37.500 0.00 0.00 0.00 3.67
543 718 4.143701 GCGCGCCGTTTTATATTAATTTGG 60.144 41.667 23.24 0.00 0.00 3.28
544 719 4.438145 TGCGCGCCGTTTTATATTAATTTG 59.562 37.500 30.77 0.00 0.00 2.32
545 720 4.599047 TGCGCGCCGTTTTATATTAATTT 58.401 34.783 30.77 0.00 0.00 1.82
546 721 4.212213 TGCGCGCCGTTTTATATTAATT 57.788 36.364 30.77 0.00 0.00 1.40
547 722 3.881780 TGCGCGCCGTTTTATATTAAT 57.118 38.095 30.77 0.00 0.00 1.40
548 723 3.546617 CATGCGCGCCGTTTTATATTAA 58.453 40.909 30.77 4.74 0.00 1.40
549 724 2.663334 GCATGCGCGCCGTTTTATATTA 60.663 45.455 30.77 4.99 0.00 0.98
550 725 1.924191 GCATGCGCGCCGTTTTATATT 60.924 47.619 30.77 0.00 0.00 1.28
551 726 0.385473 GCATGCGCGCCGTTTTATAT 60.385 50.000 30.77 9.84 0.00 0.86
552 727 1.010574 GCATGCGCGCCGTTTTATA 60.011 52.632 30.77 7.41 0.00 0.98
553 728 2.277884 GCATGCGCGCCGTTTTAT 60.278 55.556 30.77 11.56 0.00 1.40
582 757 4.097589 GCAATTTCCCTCTCAGAATTCAGG 59.902 45.833 8.44 5.42 0.00 3.86
590 765 1.927174 CGTACGCAATTTCCCTCTCAG 59.073 52.381 0.52 0.00 0.00 3.35
608 783 3.755628 ACGGCATGCGGTCTACGT 61.756 61.111 23.72 17.12 46.52 3.57
640 815 5.356470 GCTGGCTGGAGGAATATATTCATTC 59.644 44.000 23.54 17.49 38.53 2.67
641 816 5.259632 GCTGGCTGGAGGAATATATTCATT 58.740 41.667 23.54 13.06 38.53 2.57
642 817 4.324874 GGCTGGCTGGAGGAATATATTCAT 60.325 45.833 23.54 18.47 38.53 2.57
643 818 3.009473 GGCTGGCTGGAGGAATATATTCA 59.991 47.826 23.54 6.17 38.53 2.57
658 833 1.776662 TCTATCAACGTAGGCTGGCT 58.223 50.000 9.28 9.28 0.00 4.75
662 837 6.171921 ACGTCTATATCTATCAACGTAGGCT 58.828 40.000 0.00 0.00 41.08 4.58
664 839 7.486232 TCGTACGTCTATATCTATCAACGTAGG 59.514 40.741 16.05 18.80 43.61 3.18
666 841 8.917415 ATCGTACGTCTATATCTATCAACGTA 57.083 34.615 16.05 10.58 42.59 3.57
670 845 6.755607 AGCGATCGTACGTCTATATCTATCAA 59.244 38.462 17.81 0.00 35.59 2.57
678 853 5.944013 AGTAGTAGCGATCGTACGTCTATA 58.056 41.667 17.81 0.00 35.59 1.31
680 855 4.222886 GAGTAGTAGCGATCGTACGTCTA 58.777 47.826 17.81 6.15 35.59 2.59
687 862 2.368221 ACCTAGGAGTAGTAGCGATCGT 59.632 50.000 17.98 6.21 0.00 3.73
691 866 2.831333 CGAACCTAGGAGTAGTAGCGA 58.169 52.381 17.98 0.00 0.00 4.93
695 870 3.118629 TCGAAGCGAACCTAGGAGTAGTA 60.119 47.826 17.98 0.00 31.06 1.82
698 873 2.012673 GTCGAAGCGAACCTAGGAGTA 58.987 52.381 17.98 0.00 37.72 2.59
738 913 2.768253 TGGATCGAGTCAAACTGCAT 57.232 45.000 0.00 0.00 0.00 3.96
740 915 1.936547 GGATGGATCGAGTCAAACTGC 59.063 52.381 0.00 0.00 0.00 4.40
775 950 5.747197 AGTAGTGTATAATTTCGTGGAAGCG 59.253 40.000 0.00 0.00 0.00 4.68
795 970 7.054124 TGACCTGGCAAATATTCCTTAAGTAG 58.946 38.462 0.97 0.00 0.00 2.57
801 976 4.530875 CTCTGACCTGGCAAATATTCCTT 58.469 43.478 0.00 0.00 0.00 3.36
809 984 0.768221 AGGACCTCTGACCTGGCAAA 60.768 55.000 0.00 0.00 35.22 3.68
812 987 0.907230 AGAAGGACCTCTGACCTGGC 60.907 60.000 0.00 0.00 36.73 4.85
813 988 1.650528 AAGAAGGACCTCTGACCTGG 58.349 55.000 0.00 0.00 36.73 4.45
814 989 3.406764 CAAAAGAAGGACCTCTGACCTG 58.593 50.000 0.00 0.00 36.73 4.00
815 990 2.373502 CCAAAAGAAGGACCTCTGACCT 59.626 50.000 0.00 0.00 38.34 3.85
816 991 2.106684 ACCAAAAGAAGGACCTCTGACC 59.893 50.000 0.00 0.00 0.00 4.02
817 992 3.142174 CACCAAAAGAAGGACCTCTGAC 58.858 50.000 0.00 0.00 0.00 3.51
818 993 3.045634 TCACCAAAAGAAGGACCTCTGA 58.954 45.455 0.00 0.00 0.00 3.27
819 994 3.181450 ACTCACCAAAAGAAGGACCTCTG 60.181 47.826 0.00 0.00 0.00 3.35
820 995 3.049344 ACTCACCAAAAGAAGGACCTCT 58.951 45.455 0.00 0.00 0.00 3.69
821 996 3.493767 ACTCACCAAAAGAAGGACCTC 57.506 47.619 0.00 0.00 0.00 3.85
822 997 3.953542 AACTCACCAAAAGAAGGACCT 57.046 42.857 0.00 0.00 0.00 3.85
823 998 4.645136 AGAAAACTCACCAAAAGAAGGACC 59.355 41.667 0.00 0.00 0.00 4.46
824 999 5.836821 AGAAAACTCACCAAAAGAAGGAC 57.163 39.130 0.00 0.00 0.00 3.85
825 1000 6.630071 CAAAGAAAACTCACCAAAAGAAGGA 58.370 36.000 0.00 0.00 0.00 3.36
826 1001 5.291858 GCAAAGAAAACTCACCAAAAGAAGG 59.708 40.000 0.00 0.00 0.00 3.46
827 1002 5.291858 GGCAAAGAAAACTCACCAAAAGAAG 59.708 40.000 0.00 0.00 0.00 2.85
828 1003 5.175127 GGCAAAGAAAACTCACCAAAAGAA 58.825 37.500 0.00 0.00 0.00 2.52
829 1004 4.676723 CGGCAAAGAAAACTCACCAAAAGA 60.677 41.667 0.00 0.00 0.00 2.52
830 1005 3.551485 CGGCAAAGAAAACTCACCAAAAG 59.449 43.478 0.00 0.00 0.00 2.27
831 1006 3.193691 TCGGCAAAGAAAACTCACCAAAA 59.806 39.130 0.00 0.00 0.00 2.44
832 1007 2.755655 TCGGCAAAGAAAACTCACCAAA 59.244 40.909 0.00 0.00 0.00 3.28
833 1008 2.357637 CTCGGCAAAGAAAACTCACCAA 59.642 45.455 0.00 0.00 0.00 3.67
834 1009 1.946768 CTCGGCAAAGAAAACTCACCA 59.053 47.619 0.00 0.00 0.00 4.17
835 1010 1.335051 GCTCGGCAAAGAAAACTCACC 60.335 52.381 0.00 0.00 0.00 4.02
836 1011 1.335051 GGCTCGGCAAAGAAAACTCAC 60.335 52.381 0.00 0.00 0.00 3.51
837 1012 0.951558 GGCTCGGCAAAGAAAACTCA 59.048 50.000 0.00 0.00 0.00 3.41
838 1013 0.951558 TGGCTCGGCAAAGAAAACTC 59.048 50.000 0.00 0.00 0.00 3.01
839 1014 0.954452 CTGGCTCGGCAAAGAAAACT 59.046 50.000 0.00 0.00 0.00 2.66
840 1015 0.039165 CCTGGCTCGGCAAAGAAAAC 60.039 55.000 0.00 0.00 0.00 2.43
841 1016 0.467290 ACCTGGCTCGGCAAAGAAAA 60.467 50.000 0.00 0.00 0.00 2.29
842 1017 0.889186 GACCTGGCTCGGCAAAGAAA 60.889 55.000 0.00 0.00 0.00 2.52
843 1018 1.302511 GACCTGGCTCGGCAAAGAA 60.303 57.895 0.00 0.00 0.00 2.52
844 1019 2.347490 GACCTGGCTCGGCAAAGA 59.653 61.111 0.00 0.00 0.00 2.52
845 1020 2.032528 TGACCTGGCTCGGCAAAG 59.967 61.111 0.00 0.00 0.00 2.77
846 1021 2.281484 GTGACCTGGCTCGGCAAA 60.281 61.111 0.00 0.00 0.00 3.68
847 1022 3.113514 TTGTGACCTGGCTCGGCAA 62.114 57.895 0.00 0.00 0.00 4.52
848 1023 3.535629 CTTGTGACCTGGCTCGGCA 62.536 63.158 0.00 0.00 0.00 5.69
849 1024 2.743928 CTTGTGACCTGGCTCGGC 60.744 66.667 0.00 0.00 0.00 5.54
850 1025 1.374758 GACTTGTGACCTGGCTCGG 60.375 63.158 0.00 0.00 0.00 4.63
851 1026 0.946221 GTGACTTGTGACCTGGCTCG 60.946 60.000 0.00 0.00 0.00 5.03
852 1027 0.946221 CGTGACTTGTGACCTGGCTC 60.946 60.000 0.00 0.00 0.00 4.70
853 1028 1.069765 CGTGACTTGTGACCTGGCT 59.930 57.895 0.00 0.00 0.00 4.75
870 1045 0.438830 GTAGGAAAGACTTGCACGCG 59.561 55.000 3.53 3.53 0.00 6.01
890 1065 1.917568 GTGGGGGTTGGAATGGTAGTA 59.082 52.381 0.00 0.00 0.00 1.82
892 1067 0.033503 GGTGGGGGTTGGAATGGTAG 60.034 60.000 0.00 0.00 0.00 3.18
893 1068 1.511316 GGGTGGGGGTTGGAATGGTA 61.511 60.000 0.00 0.00 0.00 3.25
990 1525 2.046023 TTCGCCATGGCTGTGAGG 60.046 61.111 33.07 17.27 39.32 3.86
993 1528 2.749044 AGCTTCGCCATGGCTGTG 60.749 61.111 33.07 22.10 39.32 3.66
994 1529 2.437359 GAGCTTCGCCATGGCTGT 60.437 61.111 33.07 13.50 39.32 4.40
1065 1600 2.511145 GCGCTGCAGGAGAAGGAG 60.511 66.667 17.12 0.00 0.00 3.69
1077 1612 3.730761 GAGTTGGTGCCAGCGCTG 61.731 66.667 30.52 30.52 35.36 5.18
1698 2254 1.094785 GGTCGCCGTACCAGTAGTAA 58.905 55.000 1.61 0.00 39.50 2.24
1746 2302 1.671379 GTTCACGGTGAAGGCCTCC 60.671 63.158 22.99 1.21 37.00 4.30
1959 2521 4.514577 ACGATCTTGCTCCCGGCG 62.515 66.667 0.00 0.00 45.43 6.46
2473 3062 0.753867 TTGTGCTCCAGGTCGTACAA 59.246 50.000 9.76 9.76 0.00 2.41
2475 3064 0.669625 GGTTGTGCTCCAGGTCGTAC 60.670 60.000 0.00 0.00 0.00 3.67
2547 3147 1.001378 AGCAAGTCAAAATGGACGCAC 60.001 47.619 0.00 0.00 42.62 5.34
2549 3149 1.266718 TCAGCAAGTCAAAATGGACGC 59.733 47.619 0.00 0.00 42.62 5.19
2565 3165 3.989817 GTCAAACAATCAACCCAATCAGC 59.010 43.478 0.00 0.00 0.00 4.26
2582 3182 3.956199 CCTACATACTCCTACCGGTCAAA 59.044 47.826 12.40 0.00 0.00 2.69
2598 3198 2.060383 TCAGCAGAGCCGCCTACAT 61.060 57.895 0.00 0.00 0.00 2.29
2605 3205 1.521010 CATCCAGTCAGCAGAGCCG 60.521 63.158 0.00 0.00 0.00 5.52
2635 3235 1.524008 CCAACCCCGTTGCTTCCTTC 61.524 60.000 0.00 0.00 41.62 3.46
2637 3237 2.115266 CCAACCCCGTTGCTTCCT 59.885 61.111 0.00 0.00 41.62 3.36
2638 3238 2.989253 CCCAACCCCGTTGCTTCC 60.989 66.667 0.00 0.00 41.62 3.46
2643 3243 0.108963 TTCTACACCCAACCCCGTTG 59.891 55.000 0.00 0.00 42.49 4.10
2647 3247 2.889045 GTTTCTTTCTACACCCAACCCC 59.111 50.000 0.00 0.00 0.00 4.95
2706 3309 4.210537 TCAAAAGTTCATCGAAACGTCTCC 59.789 41.667 0.00 0.00 34.27 3.71
2711 3314 3.060138 TCGGTCAAAAGTTCATCGAAACG 60.060 43.478 0.00 0.00 34.27 3.60
2716 3319 3.483574 CCGAATCGGTCAAAAGTTCATCG 60.484 47.826 14.46 0.00 42.73 3.84
2732 3335 1.298859 ACCGAACAAGCAGCCGAATC 61.299 55.000 0.00 0.00 0.00 2.52
2798 3407 2.639347 TCATGTCTCCACAGTCCACATT 59.361 45.455 0.00 0.00 35.41 2.71
2801 3410 1.344438 TGTCATGTCTCCACAGTCCAC 59.656 52.381 0.00 0.00 35.41 4.02
2810 3419 9.149225 GAGATACATTTATCATGTCATGTCTCC 57.851 37.037 12.54 0.00 37.20 3.71
2811 3420 8.858186 CGAGATACATTTATCATGTCATGTCTC 58.142 37.037 12.54 11.91 37.20 3.36
2812 3421 8.363390 ACGAGATACATTTATCATGTCATGTCT 58.637 33.333 12.54 4.83 37.20 3.41
2813 3422 8.526218 ACGAGATACATTTATCATGTCATGTC 57.474 34.615 12.54 0.07 37.20 3.06
2814 3423 8.893219 AACGAGATACATTTATCATGTCATGT 57.107 30.769 12.54 3.37 37.20 3.21
2863 3478 2.049802 ACGCTCACACGTAACCGG 60.050 61.111 0.00 0.00 46.19 5.28
2870 3486 1.747956 CTAGCTATCACGCTCACACG 58.252 55.000 0.00 0.00 41.30 4.49
2887 3503 2.006888 CAAAGGAAGAAATCGGCGCTA 58.993 47.619 7.64 0.00 0.00 4.26
2888 3504 0.804989 CAAAGGAAGAAATCGGCGCT 59.195 50.000 7.64 0.00 0.00 5.92
2889 3505 0.798389 GCAAAGGAAGAAATCGGCGC 60.798 55.000 0.00 0.00 0.00 6.53
2890 3506 0.521242 CGCAAAGGAAGAAATCGGCG 60.521 55.000 0.00 0.00 37.17 6.46
2891 3507 0.521735 ACGCAAAGGAAGAAATCGGC 59.478 50.000 0.00 0.00 0.00 5.54
2931 3547 2.970639 CTGCCGTCCGGAAGAAGA 59.029 61.111 19.75 1.03 43.85 2.87
2932 3548 2.815647 GCTGCCGTCCGGAAGAAG 60.816 66.667 19.75 15.89 43.85 2.85
2933 3549 3.311110 AGCTGCCGTCCGGAAGAA 61.311 61.111 19.75 5.79 43.85 2.52
2953 3569 2.279851 CTGTGCGACAACGGTGGA 60.280 61.111 4.97 0.00 40.15 4.02
2954 3570 2.279851 TCTGTGCGACAACGGTGG 60.280 61.111 4.97 0.00 40.15 4.61
2959 3575 0.383124 GCTTTCGTCTGTGCGACAAC 60.383 55.000 0.00 0.00 42.98 3.32
2997 3613 4.823419 TCAATACGGCCCGCACGG 62.823 66.667 1.23 1.02 35.23 4.94
2998 3614 1.711060 AAATCAATACGGCCCGCACG 61.711 55.000 1.23 0.00 37.36 5.34
3003 3619 0.396556 ACCCCAAATCAATACGGCCC 60.397 55.000 0.00 0.00 0.00 5.80
3015 3631 1.368374 CCTACTCCCTTGACCCCAAA 58.632 55.000 0.00 0.00 0.00 3.28
3082 3756 1.466167 CTGTTGCTCCAGTTCATTCCG 59.534 52.381 0.00 0.00 0.00 4.30
3122 3796 1.334869 CGCACTTCATTCAATAGGCCC 59.665 52.381 0.00 0.00 0.00 5.80
3154 3828 2.499520 CATGCGTGCGTGGTTTCG 60.500 61.111 6.15 0.00 0.00 3.46
3175 4059 1.023513 GTGAACAGCTAGCAGGGCAG 61.024 60.000 18.83 1.76 0.00 4.85
3181 4065 0.038251 CGTGAGGTGAACAGCTAGCA 60.038 55.000 18.83 0.00 39.57 3.49
3224 4108 2.352001 CGTACGGATCGCTGACGG 60.352 66.667 7.57 0.00 40.63 4.79
3248 5613 6.215495 TGAGAATATACATCGTGTCACCAA 57.785 37.500 0.00 0.00 0.00 3.67
3336 5713 1.202521 CGATGCTATGCAGGTGTACCA 60.203 52.381 3.56 0.00 43.65 3.25
3337 5714 1.502231 CGATGCTATGCAGGTGTACC 58.498 55.000 0.00 0.00 43.65 3.34
3338 5715 0.861837 GCGATGCTATGCAGGTGTAC 59.138 55.000 0.00 0.00 43.65 2.90
3339 5716 0.249868 GGCGATGCTATGCAGGTGTA 60.250 55.000 0.00 0.00 43.65 2.90
3341 5718 1.524393 TGGCGATGCTATGCAGGTG 60.524 57.895 0.00 0.00 43.65 4.00
3342 5719 1.524621 GTGGCGATGCTATGCAGGT 60.525 57.895 0.00 0.00 43.65 4.00
3344 5721 2.933666 CGTGGCGATGCTATGCAG 59.066 61.111 0.00 0.00 43.65 4.41
3347 5724 2.628106 GTGCGTGGCGATGCTATG 59.372 61.111 14.32 0.00 34.90 2.23
3348 5725 2.588877 GGTGCGTGGCGATGCTAT 60.589 61.111 14.32 0.00 34.90 2.97
3468 5850 6.548441 GTACTAGTATGTACTCTCTGCTGG 57.452 45.833 5.75 0.00 39.55 4.85
3489 5871 9.273016 GGTAGGTACGAGTTGTTGTATATAGTA 57.727 37.037 0.00 0.00 0.00 1.82
3490 5872 7.041780 CGGTAGGTACGAGTTGTTGTATATAGT 60.042 40.741 0.00 0.00 0.00 2.12
3491 5873 7.041780 ACGGTAGGTACGAGTTGTTGTATATAG 60.042 40.741 0.00 0.00 34.93 1.31
3492 5874 6.765989 ACGGTAGGTACGAGTTGTTGTATATA 59.234 38.462 0.00 0.00 34.93 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.