Multiple sequence alignment - TraesCS7D01G516200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G516200 chr7D 100.000 3106 0 0 1 3106 615945450 615948555 0.000000e+00 5736
1 TraesCS7D01G516200 chr7D 95.192 104 5 0 1 104 568653875 568653978 6.890000e-37 165
2 TraesCS7D01G516200 chr7B 91.910 1508 70 27 665 2142 709081013 709082498 0.000000e+00 2061
3 TraesCS7D01G516200 chr7B 88.858 727 60 16 2393 3106 709084394 709085112 0.000000e+00 874
4 TraesCS7D01G516200 chr7A 92.371 852 39 5 1302 2146 708739701 708740533 0.000000e+00 1190
5 TraesCS7D01G516200 chr7A 90.943 541 31 12 2575 3106 708774561 708775092 0.000000e+00 712
6 TraesCS7D01G516200 chr7A 90.234 512 36 5 633 1132 708737802 708738311 0.000000e+00 656
7 TraesCS7D01G516200 chr7A 83.019 530 85 4 117 642 708737251 708737779 2.800000e-130 475
8 TraesCS7D01G516200 chr7A 93.377 151 10 0 1162 1312 708738477 708738627 1.120000e-54 224
9 TraesCS7D01G516200 chr7A 92.623 122 8 1 2382 2502 708742582 708742703 1.140000e-39 174
10 TraesCS7D01G516200 chr7A 95.283 106 5 0 1 106 712049982 712050087 5.330000e-38 169
11 TraesCS7D01G516200 chr7A 85.484 124 16 2 2433 2555 498590381 498590259 9.040000e-26 128
12 TraesCS7D01G516200 chr2B 87.669 665 69 10 2390 3048 136441613 136440956 0.000000e+00 761
13 TraesCS7D01G516200 chr5A 92.118 203 14 2 2182 2383 34842106 34841905 5.070000e-73 285
14 TraesCS7D01G516200 chr5A 91.626 203 14 3 2182 2383 421857539 421857739 8.480000e-71 278
15 TraesCS7D01G516200 chr5A 95.283 106 5 0 1 106 647393874 647393769 5.330000e-38 169
16 TraesCS7D01G516200 chr5A 76.415 318 65 8 1625 1940 450474298 450473989 2.480000e-36 163
17 TraesCS7D01G516200 chr5A 76.821 302 62 6 1625 1925 450541452 450541746 2.480000e-36 163
18 TraesCS7D01G516200 chr5A 76.733 202 42 4 375 572 581131344 581131544 1.180000e-19 108
19 TraesCS7D01G516200 chr3D 90.698 215 16 4 2182 2394 62813801 62813589 1.820000e-72 283
20 TraesCS7D01G516200 chr2D 91.667 204 15 2 2182 2384 112871151 112870949 6.560000e-72 281
21 TraesCS7D01G516200 chr2D 91.176 204 16 2 2182 2384 644999193 644999395 3.050000e-70 276
22 TraesCS7D01G516200 chr3A 90.521 211 16 4 2182 2391 249853956 249853749 3.050000e-70 276
23 TraesCS7D01G516200 chr3A 83.740 123 18 2 2434 2555 597168429 597168550 7.040000e-22 115
24 TraesCS7D01G516200 chr1B 90.821 207 17 2 2182 2387 538625578 538625373 3.050000e-70 276
25 TraesCS7D01G516200 chr1D 90.777 206 17 2 2182 2386 365804761 365804557 1.100000e-69 274
26 TraesCS7D01G516200 chr1D 95.283 106 4 1 1 106 16205288 16205392 1.920000e-37 167
27 TraesCS7D01G516200 chr6D 90.777 206 16 2 2182 2386 426200914 426200711 3.950000e-69 272
28 TraesCS7D01G516200 chr1A 97.115 104 3 0 1 104 535551458 535551355 3.180000e-40 176
29 TraesCS7D01G516200 chr3B 96.226 106 4 0 1 106 3135548 3135443 1.140000e-39 174
30 TraesCS7D01G516200 chr3B 96.154 104 4 0 1 104 76517064 76516961 1.480000e-38 171
31 TraesCS7D01G516200 chr2A 88.811 143 13 3 2961 3100 85295027 85294885 4.120000e-39 172
32 TraesCS7D01G516200 chr2A 96.154 104 4 0 1 104 624950062 624950165 1.480000e-38 171
33 TraesCS7D01G516200 chr2A 87.805 123 13 2 2433 2555 179289308 179289188 3.230000e-30 143
34 TraesCS7D01G516200 chr2A 85.714 119 12 5 2434 2550 657517860 657517745 1.510000e-23 121
35 TraesCS7D01G516200 chr5D 77.152 302 61 6 1625 1925 350220792 350221086 5.330000e-38 169
36 TraesCS7D01G516200 chr5D 75.472 318 68 8 1625 1940 349981164 349980855 2.500000e-31 147
37 TraesCS7D01G516200 chr4B 95.192 104 5 0 1 104 106768181 106768284 6.890000e-37 165
38 TraesCS7D01G516200 chr5B 76.821 302 62 6 1625 1925 410722994 410723288 2.480000e-36 163
39 TraesCS7D01G516200 chr5B 86.047 129 14 4 2429 2555 387741731 387741605 5.400000e-28 135
40 TraesCS7D01G516200 chr4A 84.211 133 18 3 2426 2556 633353711 633353842 3.250000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G516200 chr7D 615945450 615948555 3105 False 5736.0 5736 100.0000 1 3106 1 chr7D.!!$F2 3105
1 TraesCS7D01G516200 chr7B 709081013 709085112 4099 False 1467.5 2061 90.3840 665 3106 2 chr7B.!!$F1 2441
2 TraesCS7D01G516200 chr7A 708774561 708775092 531 False 712.0 712 90.9430 2575 3106 1 chr7A.!!$F1 531
3 TraesCS7D01G516200 chr7A 708737251 708742703 5452 False 543.8 1190 90.3248 117 2502 5 chr7A.!!$F3 2385
4 TraesCS7D01G516200 chr2B 136440956 136441613 657 True 761.0 761 87.6690 2390 3048 1 chr2B.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 366 0.238289 GTGCATGCCAGTACACACAC 59.762 55.0 16.68 0.0 33.23 3.82 F
640 677 0.458669 TGAATAGTCTCGGTTCGCCC 59.541 55.0 0.00 0.0 0.00 6.13 F
1134 1191 0.738063 TACGTAAGCGGCCACACATG 60.738 55.0 2.24 0.0 43.45 3.21 F
1577 2876 0.035630 AGTGCATGAGCCTGAACCTC 60.036 55.0 0.00 0.0 41.13 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 2791 0.250381 GAGCATCTCCCTGAGCATGG 60.250 60.000 0.0 0.0 0.0 3.66 R
1493 2792 0.600518 CGAGCATCTCCCTGAGCATG 60.601 60.000 0.0 0.0 0.0 4.06 R
2095 3394 1.002366 CACAGCTAGTCAATCGTGCC 58.998 55.000 0.0 0.0 0.0 5.01 R
2986 7337 3.698029 ACAATGCGATTTCTATGCCAC 57.302 42.857 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.880064 TTGTTTGAATTGTAATAACGAAATCGA 57.120 25.926 10.16 0.00 43.02 3.59
48 49 9.880064 TGTTTGAATTGTAATAACGAAATCGAA 57.120 25.926 10.16 0.00 43.02 3.71
92 93 9.665719 ATTTTGTTTGTGTTTTATCTTCTTGGT 57.334 25.926 0.00 0.00 0.00 3.67
93 94 9.495572 TTTTGTTTGTGTTTTATCTTCTTGGTT 57.504 25.926 0.00 0.00 0.00 3.67
94 95 8.472683 TTGTTTGTGTTTTATCTTCTTGGTTG 57.527 30.769 0.00 0.00 0.00 3.77
95 96 7.607250 TGTTTGTGTTTTATCTTCTTGGTTGT 58.393 30.769 0.00 0.00 0.00 3.32
96 97 7.543868 TGTTTGTGTTTTATCTTCTTGGTTGTG 59.456 33.333 0.00 0.00 0.00 3.33
97 98 6.767524 TGTGTTTTATCTTCTTGGTTGTGT 57.232 33.333 0.00 0.00 0.00 3.72
98 99 7.164230 TGTGTTTTATCTTCTTGGTTGTGTT 57.836 32.000 0.00 0.00 0.00 3.32
99 100 7.607250 TGTGTTTTATCTTCTTGGTTGTGTTT 58.393 30.769 0.00 0.00 0.00 2.83
100 101 7.543868 TGTGTTTTATCTTCTTGGTTGTGTTTG 59.456 33.333 0.00 0.00 0.00 2.93
101 102 7.010091 GTGTTTTATCTTCTTGGTTGTGTTTGG 59.990 37.037 0.00 0.00 0.00 3.28
102 103 7.093727 TGTTTTATCTTCTTGGTTGTGTTTGGA 60.094 33.333 0.00 0.00 0.00 3.53
103 104 6.633500 TTATCTTCTTGGTTGTGTTTGGAG 57.367 37.500 0.00 0.00 0.00 3.86
104 105 3.963129 TCTTCTTGGTTGTGTTTGGAGT 58.037 40.909 0.00 0.00 0.00 3.85
105 106 3.694072 TCTTCTTGGTTGTGTTTGGAGTG 59.306 43.478 0.00 0.00 0.00 3.51
106 107 3.358111 TCTTGGTTGTGTTTGGAGTGA 57.642 42.857 0.00 0.00 0.00 3.41
107 108 3.897239 TCTTGGTTGTGTTTGGAGTGAT 58.103 40.909 0.00 0.00 0.00 3.06
108 109 4.277476 TCTTGGTTGTGTTTGGAGTGATT 58.723 39.130 0.00 0.00 0.00 2.57
109 110 4.709397 TCTTGGTTGTGTTTGGAGTGATTT 59.291 37.500 0.00 0.00 0.00 2.17
110 111 4.647424 TGGTTGTGTTTGGAGTGATTTC 57.353 40.909 0.00 0.00 0.00 2.17
111 112 3.066064 TGGTTGTGTTTGGAGTGATTTCG 59.934 43.478 0.00 0.00 0.00 3.46
112 113 3.550030 GGTTGTGTTTGGAGTGATTTCGG 60.550 47.826 0.00 0.00 0.00 4.30
113 114 1.606668 TGTGTTTGGAGTGATTTCGGC 59.393 47.619 0.00 0.00 0.00 5.54
114 115 0.871722 TGTTTGGAGTGATTTCGGCG 59.128 50.000 0.00 0.00 0.00 6.46
115 116 1.153353 GTTTGGAGTGATTTCGGCGA 58.847 50.000 4.99 4.99 0.00 5.54
119 120 1.066502 TGGAGTGATTTCGGCGATTGA 60.067 47.619 11.76 0.00 0.00 2.57
131 132 2.349817 CGGCGATTGATGTCTATTTGCC 60.350 50.000 0.00 9.75 33.30 4.52
136 137 5.745514 CGATTGATGTCTATTTGCCAAGAG 58.254 41.667 0.00 0.00 0.00 2.85
165 166 4.737855 AGACGCATGGACAAGTAGTTAT 57.262 40.909 0.00 0.00 0.00 1.89
175 176 9.212641 CATGGACAAGTAGTTATGGATCAATAG 57.787 37.037 0.00 0.00 0.00 1.73
216 217 5.659440 TTTTTGATTGGAGATTAGGTGGC 57.341 39.130 0.00 0.00 0.00 5.01
221 222 0.913934 TGGAGATTAGGTGGCAGGCA 60.914 55.000 0.00 0.00 0.00 4.75
260 261 3.223435 TCAGGGAGGAGACTAATTAGCG 58.777 50.000 12.54 0.00 44.43 4.26
270 271 5.203060 AGACTAATTAGCGTTGAGGATCC 57.797 43.478 12.54 2.48 0.00 3.36
272 273 2.981859 AATTAGCGTTGAGGATCCGT 57.018 45.000 5.98 0.00 0.00 4.69
281 282 2.419198 AGGATCCGTGCGATGCTC 59.581 61.111 5.98 0.00 45.90 4.26
283 284 2.278857 GATCCGTGCGATGCTCGT 60.279 61.111 11.55 0.00 42.71 4.18
290 291 1.123217 CGTGCGATGCTCGTAATCATC 59.877 52.381 5.21 0.00 42.81 2.92
294 295 2.406691 GCGATGCTCGTAATCATCTGTC 59.593 50.000 7.27 0.00 42.81 3.51
298 299 2.223502 TGCTCGTAATCATCTGTCCGTC 60.224 50.000 0.00 0.00 0.00 4.79
299 300 2.033550 GCTCGTAATCATCTGTCCGTCT 59.966 50.000 0.00 0.00 0.00 4.18
302 303 5.419760 TCGTAATCATCTGTCCGTCTAAG 57.580 43.478 0.00 0.00 0.00 2.18
321 322 1.933853 AGACTATTGATTTGCCGACGC 59.066 47.619 0.00 0.00 0.00 5.19
322 323 1.933853 GACTATTGATTTGCCGACGCT 59.066 47.619 0.00 0.00 35.36 5.07
331 332 1.355971 TTGCCGACGCTCACTATTTC 58.644 50.000 0.00 0.00 35.36 2.17
332 333 0.459585 TGCCGACGCTCACTATTTCC 60.460 55.000 0.00 0.00 35.36 3.13
334 335 1.278238 CCGACGCTCACTATTTCCAC 58.722 55.000 0.00 0.00 0.00 4.02
359 363 2.615240 CCTAAGTGCATGCCAGTACACA 60.615 50.000 16.68 0.00 35.47 3.72
362 366 0.238289 GTGCATGCCAGTACACACAC 59.762 55.000 16.68 0.00 33.23 3.82
373 377 2.557056 AGTACACACACACGCTCATACT 59.443 45.455 0.00 0.00 0.00 2.12
378 382 5.902681 ACACACACACGCTCATACTTATAT 58.097 37.500 0.00 0.00 0.00 0.86
381 385 6.475402 CACACACACGCTCATACTTATATTCA 59.525 38.462 0.00 0.00 0.00 2.57
382 386 6.475727 ACACACACGCTCATACTTATATTCAC 59.524 38.462 0.00 0.00 0.00 3.18
386 390 8.290325 CACACGCTCATACTTATATTCACTCTA 58.710 37.037 0.00 0.00 0.00 2.43
387 391 8.508062 ACACGCTCATACTTATATTCACTCTAG 58.492 37.037 0.00 0.00 0.00 2.43
389 393 7.121463 ACGCTCATACTTATATTCACTCTAGGG 59.879 40.741 0.00 0.00 0.00 3.53
392 396 8.563123 TCATACTTATATTCACTCTAGGGACG 57.437 38.462 0.00 0.00 0.00 4.79
396 400 2.898729 ATTCACTCTAGGGACGCATG 57.101 50.000 0.00 0.00 0.00 4.06
405 409 2.628106 GGACGCATGCACGCATAG 59.372 61.111 19.57 1.32 34.91 2.23
412 416 2.205074 GCATGCACGCATAGACTACTT 58.795 47.619 14.21 0.00 34.91 2.24
413 417 2.609459 GCATGCACGCATAGACTACTTT 59.391 45.455 14.21 0.00 34.91 2.66
419 423 5.748630 TGCACGCATAGACTACTTTTATGAG 59.251 40.000 0.00 0.00 32.90 2.90
423 427 5.980116 CGCATAGACTACTTTTATGAGCACT 59.020 40.000 0.00 0.00 0.00 4.40
426 430 8.331742 GCATAGACTACTTTTATGAGCACTTTC 58.668 37.037 0.00 0.00 0.00 2.62
435 439 6.510879 TTTATGAGCACTTTCGAGAGACTA 57.489 37.500 10.37 0.00 41.84 2.59
439 443 5.001874 TGAGCACTTTCGAGAGACTAAGTA 58.998 41.667 10.37 0.00 38.69 2.24
440 444 5.122554 TGAGCACTTTCGAGAGACTAAGTAG 59.877 44.000 10.37 1.22 38.69 2.57
446 450 6.598457 ACTTTCGAGAGACTAAGTAGCACATA 59.402 38.462 10.37 0.00 38.89 2.29
461 465 8.604640 AGTAGCACATAATCTTGAGATTGATG 57.395 34.615 14.82 14.69 43.90 3.07
464 468 8.515695 AGCACATAATCTTGAGATTGATGAAA 57.484 30.769 14.82 0.00 43.90 2.69
466 470 9.395707 GCACATAATCTTGAGATTGATGAAATC 57.604 33.333 14.82 0.00 43.90 2.17
485 489 6.705825 TGAAATCACCACCGACATTATCATAG 59.294 38.462 0.00 0.00 0.00 2.23
487 491 5.607939 TCACCACCGACATTATCATAGTT 57.392 39.130 0.00 0.00 0.00 2.24
491 495 5.105106 ACCACCGACATTATCATAGTTGACA 60.105 40.000 0.00 0.00 33.85 3.58
492 496 5.815222 CCACCGACATTATCATAGTTGACAA 59.185 40.000 0.00 0.00 33.85 3.18
493 497 6.018751 CCACCGACATTATCATAGTTGACAAG 60.019 42.308 0.00 0.00 33.85 3.16
497 501 7.277760 CCGACATTATCATAGTTGACAAGAACA 59.722 37.037 0.00 0.00 33.85 3.18
510 514 6.609237 TGACAAGAACATCTTCTTTCACTG 57.391 37.500 0.00 0.00 43.10 3.66
513 517 7.020914 ACAAGAACATCTTCTTTCACTGAAC 57.979 36.000 0.00 0.00 43.10 3.18
514 518 5.914085 AGAACATCTTCTTTCACTGAACG 57.086 39.130 0.00 0.00 32.29 3.95
522 526 5.234329 TCTTCTTTCACTGAACGAACATCAC 59.766 40.000 6.61 0.00 29.25 3.06
523 527 4.693283 TCTTTCACTGAACGAACATCACT 58.307 39.130 0.00 0.00 0.00 3.41
529 533 3.248602 ACTGAACGAACATCACTGAAAGC 59.751 43.478 0.00 0.00 37.60 3.51
532 536 2.146342 ACGAACATCACTGAAAGCCTG 58.854 47.619 0.00 0.00 37.60 4.85
541 545 7.318141 ACATCACTGAAAGCCTGAAATAAATG 58.682 34.615 0.00 0.00 37.60 2.32
543 547 5.477984 TCACTGAAAGCCTGAAATAAATGCT 59.522 36.000 0.00 0.00 37.60 3.79
550 554 8.625786 AAAGCCTGAAATAAATGCTGAAAAAT 57.374 26.923 0.00 0.00 31.55 1.82
553 557 6.471839 CCTGAAATAAATGCTGAAAAATGCG 58.528 36.000 0.00 0.00 0.00 4.73
572 576 3.376859 TGCGAACACAAATGTCAAGTCTT 59.623 39.130 0.00 0.00 38.45 3.01
573 577 3.725740 GCGAACACAAATGTCAAGTCTTG 59.274 43.478 6.21 6.21 38.45 3.02
574 578 3.725740 CGAACACAAATGTCAAGTCTTGC 59.274 43.478 7.78 4.14 38.45 4.01
582 586 6.987992 ACAAATGTCAAGTCTTGCAATTGAAT 59.012 30.769 26.79 14.07 34.91 2.57
584 588 8.339714 CAAATGTCAAGTCTTGCAATTGAATTT 58.660 29.630 21.11 16.10 34.91 1.82
586 590 9.545105 AATGTCAAGTCTTGCAATTGAATTTTA 57.455 25.926 13.97 2.30 34.91 1.52
594 598 9.357652 GTCTTGCAATTGAATTTTAATGAGCTA 57.642 29.630 10.34 5.18 0.00 3.32
598 602 9.142515 TGCAATTGAATTTTAATGAGCTAGTTG 57.857 29.630 10.34 0.00 0.00 3.16
620 624 3.320826 GCACCACAAAGAACCTAACCATT 59.679 43.478 0.00 0.00 0.00 3.16
622 626 5.288804 CACCACAAAGAACCTAACCATTTG 58.711 41.667 0.00 0.00 37.00 2.32
628 632 8.576442 CACAAAGAACCTAACCATTTGAATAGT 58.424 33.333 3.23 0.00 35.40 2.12
640 677 0.458669 TGAATAGTCTCGGTTCGCCC 59.541 55.000 0.00 0.00 0.00 6.13
662 704 2.423577 GTCCTTTTGACCGCACTACAT 58.576 47.619 0.00 0.00 38.09 2.29
666 708 3.370978 CCTTTTGACCGCACTACATACTG 59.629 47.826 0.00 0.00 0.00 2.74
679 721 7.364200 GCACTACATACTGTACTAGATTGGAG 58.636 42.308 0.00 2.58 32.54 3.86
748 790 3.077359 CCCAAACCAAGCAACAAAAACA 58.923 40.909 0.00 0.00 0.00 2.83
910 953 5.987347 CGATGTACCTTGTCCGGTATAAATT 59.013 40.000 0.00 0.00 41.31 1.82
979 1027 3.429543 GCGTCGATCTAGTAGTACAGAGG 59.570 52.174 2.52 1.23 0.00 3.69
992 1040 4.528920 AGTACAGAGGGAGTGATCAGTAC 58.471 47.826 3.92 3.92 38.18 2.73
1132 1189 1.373246 GTACGTAAGCGGCCACACA 60.373 57.895 2.24 0.00 43.45 3.72
1134 1191 0.738063 TACGTAAGCGGCCACACATG 60.738 55.000 2.24 0.00 43.45 3.21
1136 1193 2.040544 GTAAGCGGCCACACATGCT 61.041 57.895 2.24 0.00 39.89 3.79
1137 1194 1.745115 TAAGCGGCCACACATGCTC 60.745 57.895 2.24 0.00 36.49 4.26
1138 1195 2.462125 TAAGCGGCCACACATGCTCA 62.462 55.000 2.24 0.00 36.49 4.26
1140 1197 3.104766 CGGCCACACATGCTCATC 58.895 61.111 2.24 0.00 0.00 2.92
1141 1198 1.746239 CGGCCACACATGCTCATCA 60.746 57.895 2.24 0.00 0.00 3.07
1142 1199 1.805254 GGCCACACATGCTCATCAC 59.195 57.895 0.00 0.00 0.00 3.06
1143 1200 1.426621 GCCACACATGCTCATCACG 59.573 57.895 0.00 0.00 0.00 4.35
1144 1201 1.985447 GCCACACATGCTCATCACGG 61.985 60.000 0.00 0.00 0.00 4.94
1145 1202 1.426621 CACACATGCTCATCACGGC 59.573 57.895 0.00 0.00 0.00 5.68
1275 1460 2.550180 CGACGAGCATCTCAAGGATAGA 59.450 50.000 0.00 0.00 32.64 1.98
1284 1469 5.336372 GCATCTCAAGGATAGATTCTACGCT 60.336 44.000 0.00 0.00 31.22 5.07
1332 2601 1.654023 CGGCGGAGGAATCCAAAACC 61.654 60.000 0.61 0.00 0.00 3.27
1446 2720 0.765510 GGTCACTGTTCTTCCCACCT 59.234 55.000 0.00 0.00 0.00 4.00
1463 2738 2.161012 CACCTCATGCACATTCTCACAC 59.839 50.000 0.00 0.00 0.00 3.82
1470 2769 2.291465 TGCACATTCTCACACTTGCTTC 59.709 45.455 0.00 0.00 0.00 3.86
1473 2772 3.058432 CACATTCTCACACTTGCTTCCTG 60.058 47.826 0.00 0.00 0.00 3.86
1480 2779 1.073897 ACTTGCTTCCTGGCTCACC 59.926 57.895 0.00 0.00 0.00 4.02
1492 2791 1.028868 GGCTCACCTTCCTGTCATGC 61.029 60.000 0.00 0.00 0.00 4.06
1493 2792 1.028868 GCTCACCTTCCTGTCATGCC 61.029 60.000 0.00 0.00 0.00 4.40
1494 2793 0.325933 CTCACCTTCCTGTCATGCCA 59.674 55.000 0.00 0.00 0.00 4.92
1577 2876 0.035630 AGTGCATGAGCCTGAACCTC 60.036 55.000 0.00 0.00 41.13 3.85
1928 3227 1.865788 CGACGTTCTACAACCCCGGA 61.866 60.000 0.73 0.00 0.00 5.14
2067 3366 4.394712 CGGCGAGGTTTCAGGCCT 62.395 66.667 0.00 0.00 43.38 5.19
2095 3394 0.713883 CTGTTCGGTTCACGGATTCG 59.286 55.000 0.00 0.00 44.45 3.34
2147 3447 7.147707 GGGTTTCATTGGAGTAGTACTATCTGT 60.148 40.741 5.75 0.00 0.00 3.41
2165 3465 8.850156 ACTATCTGTAAAATTTTCTGTGTTGCT 58.150 29.630 6.72 0.00 0.00 3.91
2169 3469 9.462174 TCTGTAAAATTTTCTGTGTTGCTATTG 57.538 29.630 6.72 0.00 0.00 1.90
2179 3479 6.346096 TCTGTGTTGCTATTGGAGTATTACC 58.654 40.000 0.00 0.00 0.00 2.85
2188 3488 7.083230 GCTATTGGAGTATTACCTAGTTCGAC 58.917 42.308 0.00 0.00 0.00 4.20
2189 3489 5.841957 TTGGAGTATTACCTAGTTCGACC 57.158 43.478 0.00 0.00 0.00 4.79
2190 3490 4.858850 TGGAGTATTACCTAGTTCGACCA 58.141 43.478 0.00 0.00 0.00 4.02
2192 3492 5.126061 TGGAGTATTACCTAGTTCGACCAAC 59.874 44.000 0.00 0.00 34.86 3.77
2194 3494 6.127507 GGAGTATTACCTAGTTCGACCAACTT 60.128 42.308 0.00 0.00 43.38 2.66
2196 3496 7.095270 AGTATTACCTAGTTCGACCAACTTTG 58.905 38.462 0.00 0.00 43.38 2.77
2197 3497 3.832615 ACCTAGTTCGACCAACTTTGT 57.167 42.857 0.00 0.00 43.38 2.83
2200 3500 4.243270 CCTAGTTCGACCAACTTTGTAGG 58.757 47.826 0.00 0.00 43.38 3.18
2201 3501 4.021719 CCTAGTTCGACCAACTTTGTAGGA 60.022 45.833 0.00 0.00 43.38 2.94
2202 3502 4.411256 AGTTCGACCAACTTTGTAGGAA 57.589 40.909 0.00 0.00 43.38 3.36
2204 3504 5.187687 AGTTCGACCAACTTTGTAGGAAAA 58.812 37.500 0.00 0.00 43.38 2.29
2205 3505 5.648960 AGTTCGACCAACTTTGTAGGAAAAA 59.351 36.000 0.00 0.00 43.38 1.94
2281 3620 8.291191 TGGTGCATCTAACAATATTGATTTCA 57.709 30.769 22.16 7.26 0.00 2.69
2282 3621 8.916062 TGGTGCATCTAACAATATTGATTTCAT 58.084 29.630 22.16 4.50 0.00 2.57
2399 6738 7.949006 GGAGGGAGTATATCTTTAGTAGGTCAA 59.051 40.741 0.00 0.00 0.00 3.18
2572 6914 5.803967 GGGAGTACAACATTAACTAGTGTCG 59.196 44.000 0.00 0.00 0.00 4.35
2751 7097 3.824133 TCTATTTCCAGGGCATGACATG 58.176 45.455 6.14 6.14 0.00 3.21
2767 7113 7.634671 CATGACATGCATATATGGGTTACAT 57.365 36.000 14.51 5.99 38.36 2.29
2776 7122 6.374053 GCATATATGGGTTACATGTACATGCA 59.626 38.462 31.19 21.69 42.39 3.96
2797 7143 4.746611 GCAATTCACAGCTAAACTTTGCTT 59.253 37.500 12.85 0.00 37.15 3.91
3067 7419 7.599630 TTTAGACAACGGTATGAATTACACC 57.400 36.000 0.00 0.00 31.99 4.16
3083 7435 7.386299 TGAATTACACCCACATTGCATAAAAAC 59.614 33.333 0.00 0.00 0.00 2.43
3086 7438 6.412362 ACACCCACATTGCATAAAAACTAA 57.588 33.333 0.00 0.00 0.00 2.24
3088 7444 6.873076 ACACCCACATTGCATAAAAACTAATG 59.127 34.615 0.00 0.00 35.47 1.90
3090 7446 7.601886 CACCCACATTGCATAAAAACTAATGAA 59.398 33.333 0.00 0.00 33.98 2.57
3091 7447 8.320617 ACCCACATTGCATAAAAACTAATGAAT 58.679 29.630 0.00 0.00 33.98 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.880064 TCGATTTCGTTATTACAATTCAAACAA 57.120 25.926 0.00 0.00 40.80 2.83
22 23 9.880064 TTCGATTTCGTTATTACAATTCAAACA 57.120 25.926 0.00 0.00 40.80 2.83
66 67 9.665719 ACCAAGAAGATAAAACACAAACAAAAT 57.334 25.926 0.00 0.00 0.00 1.82
67 68 9.495572 AACCAAGAAGATAAAACACAAACAAAA 57.504 25.926 0.00 0.00 0.00 2.44
68 69 8.930760 CAACCAAGAAGATAAAACACAAACAAA 58.069 29.630 0.00 0.00 0.00 2.83
69 70 8.091449 ACAACCAAGAAGATAAAACACAAACAA 58.909 29.630 0.00 0.00 0.00 2.83
70 71 7.543868 CACAACCAAGAAGATAAAACACAAACA 59.456 33.333 0.00 0.00 0.00 2.83
71 72 7.544217 ACACAACCAAGAAGATAAAACACAAAC 59.456 33.333 0.00 0.00 0.00 2.93
72 73 7.607250 ACACAACCAAGAAGATAAAACACAAA 58.393 30.769 0.00 0.00 0.00 2.83
73 74 7.164230 ACACAACCAAGAAGATAAAACACAA 57.836 32.000 0.00 0.00 0.00 3.33
74 75 6.767524 ACACAACCAAGAAGATAAAACACA 57.232 33.333 0.00 0.00 0.00 3.72
75 76 7.010091 CCAAACACAACCAAGAAGATAAAACAC 59.990 37.037 0.00 0.00 0.00 3.32
76 77 7.038659 CCAAACACAACCAAGAAGATAAAACA 58.961 34.615 0.00 0.00 0.00 2.83
77 78 7.262048 TCCAAACACAACCAAGAAGATAAAAC 58.738 34.615 0.00 0.00 0.00 2.43
78 79 7.123547 ACTCCAAACACAACCAAGAAGATAAAA 59.876 33.333 0.00 0.00 0.00 1.52
79 80 6.605594 ACTCCAAACACAACCAAGAAGATAAA 59.394 34.615 0.00 0.00 0.00 1.40
80 81 6.039270 CACTCCAAACACAACCAAGAAGATAA 59.961 38.462 0.00 0.00 0.00 1.75
81 82 5.530915 CACTCCAAACACAACCAAGAAGATA 59.469 40.000 0.00 0.00 0.00 1.98
82 83 4.339247 CACTCCAAACACAACCAAGAAGAT 59.661 41.667 0.00 0.00 0.00 2.40
83 84 3.694072 CACTCCAAACACAACCAAGAAGA 59.306 43.478 0.00 0.00 0.00 2.87
84 85 3.694072 TCACTCCAAACACAACCAAGAAG 59.306 43.478 0.00 0.00 0.00 2.85
85 86 3.691575 TCACTCCAAACACAACCAAGAA 58.308 40.909 0.00 0.00 0.00 2.52
86 87 3.358111 TCACTCCAAACACAACCAAGA 57.642 42.857 0.00 0.00 0.00 3.02
87 88 4.654091 AATCACTCCAAACACAACCAAG 57.346 40.909 0.00 0.00 0.00 3.61
88 89 4.439426 CGAAATCACTCCAAACACAACCAA 60.439 41.667 0.00 0.00 0.00 3.67
89 90 3.066064 CGAAATCACTCCAAACACAACCA 59.934 43.478 0.00 0.00 0.00 3.67
90 91 3.550030 CCGAAATCACTCCAAACACAACC 60.550 47.826 0.00 0.00 0.00 3.77
91 92 3.628017 CCGAAATCACTCCAAACACAAC 58.372 45.455 0.00 0.00 0.00 3.32
92 93 2.034053 GCCGAAATCACTCCAAACACAA 59.966 45.455 0.00 0.00 0.00 3.33
93 94 1.606668 GCCGAAATCACTCCAAACACA 59.393 47.619 0.00 0.00 0.00 3.72
94 95 1.399727 CGCCGAAATCACTCCAAACAC 60.400 52.381 0.00 0.00 0.00 3.32
95 96 0.871722 CGCCGAAATCACTCCAAACA 59.128 50.000 0.00 0.00 0.00 2.83
96 97 1.153353 TCGCCGAAATCACTCCAAAC 58.847 50.000 0.00 0.00 0.00 2.93
97 98 2.107950 ATCGCCGAAATCACTCCAAA 57.892 45.000 0.00 0.00 0.00 3.28
98 99 1.737236 CAATCGCCGAAATCACTCCAA 59.263 47.619 0.00 0.00 0.00 3.53
99 100 1.066502 TCAATCGCCGAAATCACTCCA 60.067 47.619 0.00 0.00 0.00 3.86
100 101 1.651987 TCAATCGCCGAAATCACTCC 58.348 50.000 0.00 0.00 0.00 3.85
101 102 2.609459 ACATCAATCGCCGAAATCACTC 59.391 45.455 0.00 0.00 0.00 3.51
102 103 2.609459 GACATCAATCGCCGAAATCACT 59.391 45.455 0.00 0.00 0.00 3.41
103 104 2.609459 AGACATCAATCGCCGAAATCAC 59.391 45.455 0.00 0.00 0.00 3.06
104 105 2.905075 AGACATCAATCGCCGAAATCA 58.095 42.857 0.00 0.00 0.00 2.57
105 106 5.597813 AATAGACATCAATCGCCGAAATC 57.402 39.130 0.00 0.00 0.00 2.17
106 107 5.751680 CAAATAGACATCAATCGCCGAAAT 58.248 37.500 0.00 0.00 0.00 2.17
107 108 4.495679 GCAAATAGACATCAATCGCCGAAA 60.496 41.667 0.00 0.00 0.00 3.46
108 109 3.002246 GCAAATAGACATCAATCGCCGAA 59.998 43.478 0.00 0.00 0.00 4.30
109 110 2.543848 GCAAATAGACATCAATCGCCGA 59.456 45.455 0.00 0.00 0.00 5.54
110 111 2.349817 GGCAAATAGACATCAATCGCCG 60.350 50.000 0.00 0.00 0.00 6.46
111 112 2.618241 TGGCAAATAGACATCAATCGCC 59.382 45.455 0.00 0.00 37.52 5.54
112 113 3.969117 TGGCAAATAGACATCAATCGC 57.031 42.857 0.00 0.00 0.00 4.58
113 114 5.295292 ACTCTTGGCAAATAGACATCAATCG 59.705 40.000 14.29 0.00 33.13 3.34
114 115 6.690194 ACTCTTGGCAAATAGACATCAATC 57.310 37.500 14.29 0.00 33.13 2.67
115 116 8.627403 CATTACTCTTGGCAAATAGACATCAAT 58.373 33.333 14.29 4.97 33.13 2.57
119 120 6.125029 AGCATTACTCTTGGCAAATAGACAT 58.875 36.000 14.29 4.85 33.13 3.06
151 152 8.547481 TCTATTGATCCATAACTACTTGTCCA 57.453 34.615 0.00 0.00 0.00 4.02
221 222 0.325577 GAATTTCATGGGGTGGGCCT 60.326 55.000 4.53 0.00 34.45 5.19
228 229 1.570501 TCCTCCCTGAATTTCATGGGG 59.429 52.381 22.91 19.32 36.28 4.96
234 235 6.708502 GCTAATTAGTCTCCTCCCTGAATTTC 59.291 42.308 13.91 0.00 0.00 2.17
260 261 1.766143 GCATCGCACGGATCCTCAAC 61.766 60.000 10.75 0.00 31.28 3.18
281 282 5.007823 AGTCTTAGACGGACAGATGATTACG 59.992 44.000 6.73 0.00 37.67 3.18
283 284 8.568794 CAATAGTCTTAGACGGACAGATGATTA 58.431 37.037 6.73 0.00 37.67 1.75
290 291 6.019479 GCAAATCAATAGTCTTAGACGGACAG 60.019 42.308 6.73 0.00 37.67 3.51
294 295 4.209288 CGGCAAATCAATAGTCTTAGACGG 59.791 45.833 6.73 0.00 37.67 4.79
298 299 4.318121 GCGTCGGCAAATCAATAGTCTTAG 60.318 45.833 0.00 0.00 39.62 2.18
299 300 3.554324 GCGTCGGCAAATCAATAGTCTTA 59.446 43.478 0.00 0.00 39.62 2.10
302 303 1.933853 AGCGTCGGCAAATCAATAGTC 59.066 47.619 0.00 0.00 43.41 2.59
321 322 0.541863 AGGGCCGTGGAAATAGTGAG 59.458 55.000 0.00 0.00 0.00 3.51
322 323 1.868713 TAGGGCCGTGGAAATAGTGA 58.131 50.000 8.57 0.00 0.00 3.41
331 332 2.114670 CATGCACTTAGGGCCGTGG 61.115 63.158 8.57 3.42 0.00 4.94
332 333 2.764314 GCATGCACTTAGGGCCGTG 61.764 63.158 14.21 6.14 0.00 4.94
334 335 3.211963 GGCATGCACTTAGGGCCG 61.212 66.667 21.36 0.00 34.56 6.13
359 363 6.806751 AGTGAATATAAGTATGAGCGTGTGT 58.193 36.000 0.00 0.00 0.00 3.72
362 366 7.965655 CCTAGAGTGAATATAAGTATGAGCGTG 59.034 40.741 0.00 0.00 0.00 5.34
373 377 5.566826 GCATGCGTCCCTAGAGTGAATATAA 60.567 44.000 0.00 0.00 0.00 0.98
378 382 0.175760 GCATGCGTCCCTAGAGTGAA 59.824 55.000 0.00 0.00 0.00 3.18
381 385 1.517832 GTGCATGCGTCCCTAGAGT 59.482 57.895 14.09 0.00 0.00 3.24
382 386 1.589993 CGTGCATGCGTCCCTAGAG 60.590 63.158 14.09 0.00 0.00 2.43
386 390 3.384275 TATGCGTGCATGCGTCCCT 62.384 57.895 28.27 11.24 37.82 4.20
387 391 2.885676 CTATGCGTGCATGCGTCCC 61.886 63.158 28.27 0.92 37.82 4.46
389 393 1.148157 AGTCTATGCGTGCATGCGTC 61.148 55.000 28.27 14.77 37.82 5.19
392 396 1.858091 AGTAGTCTATGCGTGCATGC 58.142 50.000 24.20 24.20 37.82 4.06
396 400 5.332656 GCTCATAAAAGTAGTCTATGCGTGC 60.333 44.000 0.00 0.00 0.00 5.34
405 409 6.807230 TCTCGAAAGTGCTCATAAAAGTAGTC 59.193 38.462 0.00 0.00 0.00 2.59
412 416 5.392767 AGTCTCTCGAAAGTGCTCATAAA 57.607 39.130 0.00 0.00 0.00 1.40
413 417 6.151312 ACTTAGTCTCTCGAAAGTGCTCATAA 59.849 38.462 0.00 0.00 31.20 1.90
419 423 4.099824 GCTACTTAGTCTCTCGAAAGTGC 58.900 47.826 7.93 6.26 34.23 4.40
423 427 5.899120 ATGTGCTACTTAGTCTCTCGAAA 57.101 39.130 0.00 0.00 0.00 3.46
426 430 7.197071 AGATTATGTGCTACTTAGTCTCTCG 57.803 40.000 0.00 0.00 0.00 4.04
435 439 9.053840 CATCAATCTCAAGATTATGTGCTACTT 57.946 33.333 4.98 0.00 42.41 2.24
439 443 8.515695 TTTCATCAATCTCAAGATTATGTGCT 57.484 30.769 4.98 0.00 42.41 4.40
440 444 9.395707 GATTTCATCAATCTCAAGATTATGTGC 57.604 33.333 4.98 0.00 42.41 4.57
446 450 7.147949 GGTGGTGATTTCATCAATCTCAAGATT 60.148 37.037 0.00 0.00 44.93 2.40
461 465 6.706270 ACTATGATAATGTCGGTGGTGATTTC 59.294 38.462 0.00 0.00 0.00 2.17
464 468 5.808366 ACTATGATAATGTCGGTGGTGAT 57.192 39.130 0.00 0.00 0.00 3.06
466 470 5.234329 GTCAACTATGATAATGTCGGTGGTG 59.766 44.000 0.00 0.00 38.01 4.17
468 472 5.356426 TGTCAACTATGATAATGTCGGTGG 58.644 41.667 0.00 0.00 38.01 4.61
469 473 6.756542 TCTTGTCAACTATGATAATGTCGGTG 59.243 38.462 0.00 0.00 36.29 4.94
472 476 8.185003 TGTTCTTGTCAACTATGATAATGTCG 57.815 34.615 0.00 0.00 36.29 4.35
492 496 5.601662 TCGTTCAGTGAAAGAAGATGTTCT 58.398 37.500 17.63 0.00 45.56 3.01
493 497 5.907197 TCGTTCAGTGAAAGAAGATGTTC 57.093 39.130 17.63 0.00 28.26 3.18
497 501 5.991606 TGATGTTCGTTCAGTGAAAGAAGAT 59.008 36.000 30.51 30.51 42.70 2.40
510 514 2.808543 AGGCTTTCAGTGATGTTCGTTC 59.191 45.455 0.00 0.00 0.00 3.95
513 517 2.416747 TCAGGCTTTCAGTGATGTTCG 58.583 47.619 0.00 0.00 0.00 3.95
514 518 4.836125 TTTCAGGCTTTCAGTGATGTTC 57.164 40.909 0.00 0.00 0.00 3.18
522 526 5.957798 TCAGCATTTATTTCAGGCTTTCAG 58.042 37.500 0.00 0.00 31.30 3.02
523 527 5.981088 TCAGCATTTATTTCAGGCTTTCA 57.019 34.783 0.00 0.00 31.30 2.69
529 533 6.310956 TCGCATTTTTCAGCATTTATTTCAGG 59.689 34.615 0.00 0.00 0.00 3.86
532 536 7.475256 GTGTTCGCATTTTTCAGCATTTATTTC 59.525 33.333 0.00 0.00 0.00 2.17
541 545 4.025813 ACATTTGTGTTCGCATTTTTCAGC 60.026 37.500 0.00 0.00 0.00 4.26
543 547 5.105063 TGACATTTGTGTTCGCATTTTTCA 58.895 33.333 0.00 0.00 0.00 2.69
550 554 2.942376 AGACTTGACATTTGTGTTCGCA 59.058 40.909 0.00 0.00 0.00 5.10
553 557 4.671377 TGCAAGACTTGACATTTGTGTTC 58.329 39.130 19.51 0.00 0.00 3.18
572 576 9.142515 CAACTAGCTCATTAAAATTCAATTGCA 57.857 29.630 0.00 0.00 0.00 4.08
573 577 8.112449 GCAACTAGCTCATTAAAATTCAATTGC 58.888 33.333 0.00 0.00 41.15 3.56
574 578 9.142515 TGCAACTAGCTCATTAAAATTCAATTG 57.857 29.630 0.00 0.00 45.94 2.32
582 586 4.824537 TGTGGTGCAACTAGCTCATTAAAA 59.175 37.500 2.04 0.00 45.94 1.52
584 588 4.014569 TGTGGTGCAACTAGCTCATTAA 57.985 40.909 2.04 0.00 45.94 1.40
586 590 2.566833 TGTGGTGCAACTAGCTCATT 57.433 45.000 2.04 0.00 45.94 2.57
594 598 2.143876 AGGTTCTTTGTGGTGCAACT 57.856 45.000 2.04 0.00 36.72 3.16
598 602 2.303175 TGGTTAGGTTCTTTGTGGTGC 58.697 47.619 0.00 0.00 0.00 5.01
620 624 1.134907 GGGCGAACCGAGACTATTCAA 60.135 52.381 0.00 0.00 36.48 2.69
622 626 3.269520 GGGCGAACCGAGACTATTC 57.730 57.895 0.00 0.00 36.48 1.75
662 704 6.728411 TCTTCCACTCCAATCTAGTACAGTA 58.272 40.000 0.00 0.00 0.00 2.74
666 708 8.669243 CAATTTTCTTCCACTCCAATCTAGTAC 58.331 37.037 0.00 0.00 0.00 2.73
705 747 0.109597 GTGGTTTCCGCATGCTTCAG 60.110 55.000 17.13 0.00 33.65 3.02
815 858 3.483421 AGGGTAAAAGGTACACACAAGC 58.517 45.455 0.00 0.00 0.00 4.01
872 915 1.153369 CATCGCCGTCCACAATCCT 60.153 57.895 0.00 0.00 0.00 3.24
910 953 3.701587 AGCATTGGCATGGAAGCTCCA 62.702 52.381 7.26 7.26 44.48 3.86
922 965 0.179119 GCATGTGGAGAAGCATTGGC 60.179 55.000 0.00 0.00 41.61 4.52
923 966 1.135199 GTGCATGTGGAGAAGCATTGG 60.135 52.381 0.00 0.00 39.43 3.16
959 1007 5.212532 TCCCTCTGTACTACTAGATCGAC 57.787 47.826 0.00 0.00 0.00 4.20
979 1027 3.806380 TCTCCTACGTACTGATCACTCC 58.194 50.000 0.00 0.00 0.00 3.85
992 1040 2.587522 TCTCCATGTCCATCTCCTACG 58.412 52.381 0.00 0.00 0.00 3.51
1143 1200 1.378124 TAATTAACTTGCGGCCGGCC 61.378 55.000 36.69 36.69 42.61 6.13
1144 1201 0.452585 TTAATTAACTTGCGGCCGGC 59.547 50.000 29.38 21.18 43.96 6.13
1145 1202 3.430333 AATTAATTAACTTGCGGCCGG 57.570 42.857 29.38 13.36 0.00 6.13
1218 1403 1.522580 GCGCTTCACCTCCTCCATC 60.523 63.158 0.00 0.00 0.00 3.51
1275 1460 0.381089 CGAGGTCGGAAGCGTAGAAT 59.619 55.000 0.00 0.00 35.37 2.40
1284 1469 2.602267 TCCTTGGCGAGGTCGGAA 60.602 61.111 20.33 0.00 46.39 4.30
1434 2708 1.168714 GTGCATGAGGTGGGAAGAAC 58.831 55.000 0.00 0.00 0.00 3.01
1446 2720 2.227149 GCAAGTGTGAGAATGTGCATGA 59.773 45.455 0.00 0.00 32.29 3.07
1463 2738 0.251077 AAGGTGAGCCAGGAAGCAAG 60.251 55.000 0.00 0.00 37.19 4.01
1470 2769 1.298014 GACAGGAAGGTGAGCCAGG 59.702 63.158 0.00 0.00 37.19 4.45
1473 2772 1.028868 GCATGACAGGAAGGTGAGCC 61.029 60.000 0.00 0.00 0.00 4.70
1480 2779 1.022735 GAGCATGGCATGACAGGAAG 58.977 55.000 30.69 2.86 0.00 3.46
1492 2791 0.250381 GAGCATCTCCCTGAGCATGG 60.250 60.000 0.00 0.00 0.00 3.66
1493 2792 0.600518 CGAGCATCTCCCTGAGCATG 60.601 60.000 0.00 0.00 0.00 4.06
1494 2793 0.758310 TCGAGCATCTCCCTGAGCAT 60.758 55.000 0.00 0.00 0.00 3.79
2067 3366 2.940410 GTGAACCGAACAGTTCCTTGAA 59.060 45.455 7.76 0.00 44.55 2.69
2095 3394 1.002366 CACAGCTAGTCAATCGTGCC 58.998 55.000 0.00 0.00 0.00 5.01
2147 3447 8.637986 ACTCCAATAGCAACACAGAAAATTTTA 58.362 29.630 2.75 0.00 0.00 1.52
2149 3449 7.054491 ACTCCAATAGCAACACAGAAAATTT 57.946 32.000 0.00 0.00 0.00 1.82
2150 3450 6.655078 ACTCCAATAGCAACACAGAAAATT 57.345 33.333 0.00 0.00 0.00 1.82
2155 3455 6.156256 AGGTAATACTCCAATAGCAACACAGA 59.844 38.462 0.00 0.00 0.00 3.41
2159 3459 7.670605 ACTAGGTAATACTCCAATAGCAACA 57.329 36.000 0.00 0.00 0.00 3.33
2160 3460 7.381678 CGAACTAGGTAATACTCCAATAGCAAC 59.618 40.741 0.00 0.00 0.00 4.17
2161 3461 7.286087 TCGAACTAGGTAATACTCCAATAGCAA 59.714 37.037 0.00 0.00 0.00 3.91
2163 3463 7.083230 GTCGAACTAGGTAATACTCCAATAGC 58.917 42.308 0.00 0.00 0.00 2.97
2165 3465 7.062322 TGGTCGAACTAGGTAATACTCCAATA 58.938 38.462 0.33 0.00 0.00 1.90
2166 3466 5.895534 TGGTCGAACTAGGTAATACTCCAAT 59.104 40.000 0.33 0.00 0.00 3.16
2168 3468 4.858850 TGGTCGAACTAGGTAATACTCCA 58.141 43.478 0.33 0.00 0.00 3.86
2169 3469 5.359292 AGTTGGTCGAACTAGGTAATACTCC 59.641 44.000 0.33 0.00 43.54 3.85
2179 3479 5.130292 TCCTACAAAGTTGGTCGAACTAG 57.870 43.478 0.33 0.37 44.68 2.57
2235 3535 9.816354 GCACCATAAAATTAACTTTCATACCAT 57.184 29.630 0.00 0.00 0.00 3.55
2236 3536 8.807118 TGCACCATAAAATTAACTTTCATACCA 58.193 29.630 0.00 0.00 0.00 3.25
2237 3537 9.816354 ATGCACCATAAAATTAACTTTCATACC 57.184 29.630 0.00 0.00 0.00 2.73
2374 3985 8.937207 TTGACCTACTAAAGATATACTCCCTC 57.063 38.462 0.00 0.00 0.00 4.30
2414 6754 6.148315 ACGGAGGTTGTATTAGCAACTAAAAC 59.852 38.462 8.53 0.00 45.69 2.43
2544 6886 7.015877 ACACTAGTTAATGTTGTACTCCCTTCA 59.984 37.037 0.00 0.00 0.00 3.02
2751 7097 6.374053 TGCATGTACATGTAACCCATATATGC 59.626 38.462 31.10 17.05 40.80 3.14
2767 7113 5.473162 AGTTTAGCTGTGAATTGCATGTACA 59.527 36.000 0.00 0.00 0.00 2.90
2776 7122 4.746611 GCAAGCAAAGTTTAGCTGTGAATT 59.253 37.500 11.60 0.00 41.70 2.17
2797 7143 5.199723 TGCATGTTTCCTATCCATTTAGCA 58.800 37.500 0.00 0.00 0.00 3.49
2967 7318 6.212235 TGCCACTTGTGTGTAATTTTGTATG 58.788 36.000 0.00 0.00 42.34 2.39
2986 7337 3.698029 ACAATGCGATTTCTATGCCAC 57.302 42.857 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.