Multiple sequence alignment - TraesCS7D01G515500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G515500 | chr7D | 100.000 | 4130 | 0 | 0 | 1 | 4130 | 615881372 | 615877243 | 0.000000e+00 | 7627 |
1 | TraesCS7D01G515500 | chr7D | 84.080 | 1294 | 191 | 8 | 1656 | 2946 | 615869763 | 615868482 | 0.000000e+00 | 1234 |
2 | TraesCS7D01G515500 | chr7D | 84.901 | 404 | 51 | 6 | 1218 | 1613 | 615870180 | 615869779 | 2.310000e-107 | 399 |
3 | TraesCS7D01G515500 | chr7D | 79.677 | 433 | 37 | 21 | 2968 | 3391 | 615868517 | 615868127 | 8.800000e-67 | 265 |
4 | TraesCS7D01G515500 | chr7B | 92.535 | 2371 | 151 | 10 | 4 | 2352 | 708874652 | 708872286 | 0.000000e+00 | 3374 |
5 | TraesCS7D01G515500 | chr7B | 93.326 | 959 | 42 | 4 | 2347 | 3285 | 708867342 | 708866386 | 0.000000e+00 | 1397 |
6 | TraesCS7D01G515500 | chr7B | 84.312 | 1294 | 187 | 10 | 1656 | 2946 | 708847680 | 708846400 | 0.000000e+00 | 1251 |
7 | TraesCS7D01G515500 | chr7B | 91.232 | 422 | 25 | 6 | 3714 | 4130 | 708865500 | 708865086 | 7.750000e-157 | 564 |
8 | TraesCS7D01G515500 | chr7B | 92.571 | 350 | 13 | 5 | 3369 | 3718 | 708866115 | 708865779 | 1.330000e-134 | 490 |
9 | TraesCS7D01G515500 | chr7B | 84.483 | 406 | 55 | 4 | 1215 | 1613 | 708848100 | 708847696 | 1.080000e-105 | 394 |
10 | TraesCS7D01G515500 | chr7B | 78.984 | 433 | 43 | 24 | 2968 | 3391 | 708846435 | 708846042 | 6.850000e-63 | 252 |
11 | TraesCS7D01G515500 | chr7B | 74.118 | 340 | 75 | 8 | 897 | 1225 | 708848511 | 708848174 | 1.210000e-25 | 128 |
12 | TraesCS7D01G515500 | chr7A | 84.971 | 1730 | 222 | 15 | 1244 | 2958 | 708504701 | 708502995 | 0.000000e+00 | 1720 |
13 | TraesCS7D01G515500 | chr7A | 85.097 | 1295 | 176 | 10 | 1656 | 2946 | 708512916 | 708511635 | 0.000000e+00 | 1306 |
14 | TraesCS7D01G515500 | chr7A | 84.653 | 404 | 52 | 6 | 1218 | 1613 | 708513333 | 708512932 | 1.080000e-105 | 394 |
15 | TraesCS7D01G515500 | chr7A | 79.215 | 433 | 39 | 21 | 2968 | 3391 | 708511670 | 708511280 | 1.910000e-63 | 254 |
16 | TraesCS7D01G515500 | chr7A | 85.308 | 211 | 18 | 7 | 3915 | 4112 | 708609583 | 708609373 | 5.410000e-49 | 206 |
17 | TraesCS7D01G515500 | chr7A | 83.406 | 229 | 23 | 8 | 3915 | 4130 | 708604690 | 708604464 | 9.060000e-47 | 198 |
18 | TraesCS7D01G515500 | chr7A | 88.889 | 126 | 12 | 2 | 3989 | 4112 | 708561579 | 708561454 | 1.990000e-33 | 154 |
19 | TraesCS7D01G515500 | chrUn | 88.571 | 140 | 14 | 2 | 3971 | 4109 | 83504496 | 83504358 | 7.100000e-38 | 169 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G515500 | chr7D | 615877243 | 615881372 | 4129 | True | 7627.000000 | 7627 | 100.000000 | 1 | 4130 | 1 | chr7D.!!$R1 | 4129 |
1 | TraesCS7D01G515500 | chr7D | 615868127 | 615870180 | 2053 | True | 632.666667 | 1234 | 82.886000 | 1218 | 3391 | 3 | chr7D.!!$R2 | 2173 |
2 | TraesCS7D01G515500 | chr7B | 708872286 | 708874652 | 2366 | True | 3374.000000 | 3374 | 92.535000 | 4 | 2352 | 1 | chr7B.!!$R1 | 2348 |
3 | TraesCS7D01G515500 | chr7B | 708865086 | 708867342 | 2256 | True | 817.000000 | 1397 | 92.376333 | 2347 | 4130 | 3 | chr7B.!!$R3 | 1783 |
4 | TraesCS7D01G515500 | chr7B | 708846042 | 708848511 | 2469 | True | 506.250000 | 1251 | 80.474250 | 897 | 3391 | 4 | chr7B.!!$R2 | 2494 |
5 | TraesCS7D01G515500 | chr7A | 708502995 | 708504701 | 1706 | True | 1720.000000 | 1720 | 84.971000 | 1244 | 2958 | 1 | chr7A.!!$R1 | 1714 |
6 | TraesCS7D01G515500 | chr7A | 708511280 | 708513333 | 2053 | True | 651.333333 | 1306 | 82.988333 | 1218 | 3391 | 3 | chr7A.!!$R5 | 2173 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
526 | 528 | 0.037326 | TGCTCTGGAAGTAAGGCACG | 60.037 | 55.0 | 0.0 | 0.00 | 33.76 | 5.34 | F |
1374 | 1487 | 0.034896 | TTCTCCGTGCTCTTTGGGAC | 59.965 | 55.0 | 0.0 | 0.00 | 0.00 | 4.46 | F |
1381 | 1494 | 0.107703 | TGCTCTTTGGGACCATAGCG | 60.108 | 55.0 | 13.0 | 5.69 | 32.68 | 4.26 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2012 | 2128 | 0.391263 | CCGGTAGGCTTGGTGAAGAC | 60.391 | 60.0 | 0.0 | 0.0 | 37.51 | 3.01 | R |
2535 | 2654 | 0.107703 | GCTCGACATTGGTGGATGGA | 60.108 | 55.0 | 0.0 | 0.0 | 31.01 | 3.41 | R |
3134 | 3263 | 0.249699 | AGAATCGGTCACGCAACACA | 60.250 | 50.0 | 0.0 | 0.0 | 40.69 | 3.72 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 8.532977 | GGATACAAAAACATATGCAAACTGTT | 57.467 | 30.769 | 1.58 | 0.00 | 34.71 | 3.16 |
53 | 54 | 7.763985 | GCAAACTGTTAACTGGCCAATATAATT | 59.236 | 33.333 | 7.01 | 0.00 | 0.00 | 1.40 |
54 | 55 | 9.301153 | CAAACTGTTAACTGGCCAATATAATTC | 57.699 | 33.333 | 7.01 | 0.00 | 0.00 | 2.17 |
56 | 57 | 8.588290 | ACTGTTAACTGGCCAATATAATTCAA | 57.412 | 30.769 | 7.01 | 0.00 | 0.00 | 2.69 |
64 | 65 | 9.791801 | ACTGGCCAATATAATTCAAAAAGTTTT | 57.208 | 25.926 | 7.01 | 0.00 | 0.00 | 2.43 |
111 | 112 | 8.339344 | TGAAGATTTGAAGAGAAACATATGCA | 57.661 | 30.769 | 1.58 | 0.00 | 0.00 | 3.96 |
160 | 161 | 8.286191 | AGTTTCTAGATTTCTTTAAGGCCATG | 57.714 | 34.615 | 5.01 | 0.00 | 0.00 | 3.66 |
161 | 162 | 7.340487 | AGTTTCTAGATTTCTTTAAGGCCATGG | 59.660 | 37.037 | 7.63 | 7.63 | 0.00 | 3.66 |
167 | 168 | 7.357471 | AGATTTCTTTAAGGCCATGGTTATCT | 58.643 | 34.615 | 14.67 | 3.48 | 0.00 | 1.98 |
196 | 197 | 7.681939 | ATCGGCAGAAGTTAAACAAAATCTA | 57.318 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
200 | 201 | 6.251376 | GGCAGAAGTTAAACAAAATCTATGCG | 59.749 | 38.462 | 0.00 | 0.00 | 0.00 | 4.73 |
211 | 212 | 7.391148 | ACAAAATCTATGCGTTATGGTTCTT | 57.609 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
242 | 243 | 8.190784 | ACACAGTCCTAAAACAAAGATCAAAAG | 58.809 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
243 | 244 | 7.649306 | CACAGTCCTAAAACAAAGATCAAAAGG | 59.351 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
251 | 252 | 8.628630 | AAAACAAAGATCAAAAGGGAAAAACA | 57.371 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
255 | 256 | 7.280652 | ACAAAGATCAAAAGGGAAAAACACATG | 59.719 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
263 | 264 | 5.391312 | AGGGAAAAACACATGTAAGATGC | 57.609 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
289 | 290 | 8.759641 | CGATAAAAACACTCTAGATGAATCTGG | 58.240 | 37.037 | 2.99 | 0.17 | 37.76 | 3.86 |
292 | 293 | 5.350504 | AACACTCTAGATGAATCTGGTGG | 57.649 | 43.478 | 18.18 | 10.35 | 37.44 | 4.61 |
294 | 295 | 2.363680 | ACTCTAGATGAATCTGGTGGCG | 59.636 | 50.000 | 2.99 | 0.00 | 37.76 | 5.69 |
330 | 331 | 4.538746 | AGACTTAAAGGCGAACTTAGCT | 57.461 | 40.909 | 0.00 | 0.00 | 38.85 | 3.32 |
352 | 353 | 7.872881 | AGCTGTTGATCAATCATGAATATGTC | 58.127 | 34.615 | 12.12 | 1.78 | 39.49 | 3.06 |
353 | 354 | 7.501225 | AGCTGTTGATCAATCATGAATATGTCA | 59.499 | 33.333 | 12.12 | 0.00 | 39.49 | 3.58 |
393 | 395 | 4.686839 | GTCAGCTAGACAATTGGTTTCC | 57.313 | 45.455 | 10.83 | 0.00 | 46.77 | 3.13 |
400 | 402 | 6.494835 | AGCTAGACAATTGGTTTCCAGAAAAT | 59.505 | 34.615 | 10.83 | 0.00 | 33.81 | 1.82 |
429 | 431 | 7.611213 | ACAAGTTAGTCTACAATGCCATAAC | 57.389 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
435 | 437 | 6.500684 | AGTCTACAATGCCATAACAGTTTG | 57.499 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
441 | 443 | 3.222173 | TGCCATAACAGTTTGACCAGT | 57.778 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
443 | 445 | 3.146066 | GCCATAACAGTTTGACCAGTGA | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
469 | 471 | 5.944007 | ACCTACAAAACAGGGTGAATATGAC | 59.056 | 40.000 | 0.00 | 0.00 | 37.51 | 3.06 |
481 | 483 | 7.388776 | CAGGGTGAATATGACCATGTATTACTG | 59.611 | 40.741 | 9.62 | 1.61 | 39.83 | 2.74 |
514 | 516 | 9.906660 | TGTGTTTAACTTATTTTATTGCTCTGG | 57.093 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
526 | 528 | 0.037326 | TGCTCTGGAAGTAAGGCACG | 60.037 | 55.000 | 0.00 | 0.00 | 33.76 | 5.34 |
527 | 529 | 0.741221 | GCTCTGGAAGTAAGGCACGG | 60.741 | 60.000 | 0.00 | 0.00 | 33.76 | 4.94 |
537 | 539 | 6.053650 | GGAAGTAAGGCACGGTAATTCTTAT | 58.946 | 40.000 | 0.00 | 0.00 | 31.78 | 1.73 |
586 | 588 | 7.621832 | TTGTTCTGTAATGAAAAAGATTGCG | 57.378 | 32.000 | 0.00 | 0.00 | 0.00 | 4.85 |
629 | 631 | 9.320352 | TCATCAGCATTGAAATCATTTTAATGG | 57.680 | 29.630 | 22.50 | 11.50 | 43.10 | 3.16 |
630 | 632 | 9.320352 | CATCAGCATTGAAATCATTTTAATGGA | 57.680 | 29.630 | 22.50 | 15.18 | 43.10 | 3.41 |
705 | 711 | 7.827236 | TGGGTATGTACCTTTTCTTCTAACATG | 59.173 | 37.037 | 8.97 | 0.00 | 45.72 | 3.21 |
716 | 722 | 9.231297 | CTTTTCTTCTAACATGGATCTTTGGTA | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
747 | 753 | 6.682423 | TTAGACATGTTATGATGTTGCCTG | 57.318 | 37.500 | 0.00 | 0.00 | 36.67 | 4.85 |
756 | 762 | 1.687660 | TGATGTTGCCTGCACAATTGT | 59.312 | 42.857 | 4.92 | 4.92 | 0.00 | 2.71 |
801 | 807 | 7.621428 | ACATAGAAGATGAAATGTTCCACTG | 57.379 | 36.000 | 0.00 | 0.00 | 46.88 | 3.66 |
821 | 827 | 2.019984 | GATCCCTTGCAACCATGAGTC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
831 | 837 | 2.649331 | ACCATGAGTCGGTAAAGTCG | 57.351 | 50.000 | 0.00 | 0.00 | 34.02 | 4.18 |
833 | 839 | 2.298163 | ACCATGAGTCGGTAAAGTCGTT | 59.702 | 45.455 | 0.00 | 0.00 | 34.02 | 3.85 |
836 | 842 | 4.142534 | CCATGAGTCGGTAAAGTCGTTCTA | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
955 | 961 | 3.889815 | CTCTACAAGCATGATTTCCCCA | 58.110 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
1008 | 1014 | 0.941963 | AGTACCTCCCCATGCTCCTA | 59.058 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1049 | 1061 | 0.677731 | CGCTTGGCCAAGAGGATCAA | 60.678 | 55.000 | 42.96 | 8.86 | 40.79 | 2.57 |
1061 | 1073 | 3.113824 | AGAGGATCAATGAGCTCAAGGT | 58.886 | 45.455 | 22.50 | 12.96 | 37.82 | 3.50 |
1087 | 1099 | 2.362503 | ATGACGTCGGCCAGAGGA | 60.363 | 61.111 | 19.33 | 0.00 | 38.08 | 3.71 |
1164 | 1179 | 1.457831 | GGTCCGACCTAGCCAGGAT | 60.458 | 63.158 | 4.75 | 0.00 | 45.91 | 3.24 |
1165 | 1180 | 1.742768 | GTCCGACCTAGCCAGGATG | 59.257 | 63.158 | 4.75 | 0.00 | 45.91 | 3.51 |
1307 | 1417 | 1.108776 | GATGTACGTAGGTGCCTCCA | 58.891 | 55.000 | 0.00 | 0.00 | 39.02 | 3.86 |
1320 | 1430 | 4.837860 | AGGTGCCTCCATAAAAATTTGTCA | 59.162 | 37.500 | 0.00 | 0.00 | 39.02 | 3.58 |
1369 | 1482 | 1.277557 | AGATGCTTCTCCGTGCTCTTT | 59.722 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1374 | 1487 | 0.034896 | TTCTCCGTGCTCTTTGGGAC | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1381 | 1494 | 0.107703 | TGCTCTTTGGGACCATAGCG | 60.108 | 55.000 | 13.00 | 5.69 | 32.68 | 4.26 |
1464 | 1577 | 5.464168 | GGCATGGATATCAAAGATTTTCCG | 58.536 | 41.667 | 4.83 | 0.00 | 0.00 | 4.30 |
1553 | 1666 | 1.372087 | GCCTTCCACGATGAAGCCAG | 61.372 | 60.000 | 11.52 | 2.65 | 40.34 | 4.85 |
1560 | 1673 | 0.251354 | ACGATGAAGCCAGCATCAGT | 59.749 | 50.000 | 3.79 | 7.06 | 41.66 | 3.41 |
1587 | 1700 | 3.976701 | CTTGGTCCGGCGATGGCTT | 62.977 | 63.158 | 9.30 | 0.00 | 39.81 | 4.35 |
1659 | 1772 | 2.044452 | GCAAGTTGCTGCTTCCCTT | 58.956 | 52.632 | 20.71 | 0.00 | 40.96 | 3.95 |
1812 | 1925 | 4.801330 | TCGTATGTCCACAACTGAGAAT | 57.199 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
2012 | 2128 | 1.998315 | CATGCTCAACTTCCTCGAGTG | 59.002 | 52.381 | 12.31 | 2.43 | 0.00 | 3.51 |
2076 | 2192 | 3.807209 | GCTGCAAGGGTCTACAAAAGAGA | 60.807 | 47.826 | 0.00 | 0.00 | 33.88 | 3.10 |
2214 | 2330 | 1.279496 | GGGAAACTAAGGTACGGGGT | 58.721 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2262 | 2378 | 4.213482 | CGAAAGCTAAAACACCTGCTTACT | 59.787 | 41.667 | 0.00 | 0.00 | 43.80 | 2.24 |
2364 | 2480 | 1.531423 | TACTGTCTCGTGTCCAGGTC | 58.469 | 55.000 | 10.18 | 0.00 | 0.00 | 3.85 |
2400 | 2516 | 1.130561 | GAATTCGAAGAAGTTGGCCGG | 59.869 | 52.381 | 3.35 | 0.00 | 45.90 | 6.13 |
2468 | 2584 | 2.621998 | GCCAAGCTCAATACAGCATGAT | 59.378 | 45.455 | 0.00 | 0.00 | 39.92 | 2.45 |
2529 | 2645 | 4.222124 | ACGCTCTCTTTCAATATGGGTT | 57.778 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
2535 | 2654 | 6.408662 | GCTCTCTTTCAATATGGGTTACTCCT | 60.409 | 42.308 | 0.00 | 0.00 | 36.25 | 3.69 |
2539 | 2658 | 6.389869 | TCTTTCAATATGGGTTACTCCTCCAT | 59.610 | 38.462 | 0.00 | 0.00 | 43.08 | 3.41 |
2549 | 2671 | 1.673767 | ACTCCTCCATCCACCAATGT | 58.326 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2553 | 2675 | 1.473965 | CCTCCATCCACCAATGTCGAG | 60.474 | 57.143 | 0.00 | 0.00 | 0.00 | 4.04 |
2762 | 2884 | 2.229543 | GCAACAATCTCCATCACTTGCA | 59.770 | 45.455 | 0.00 | 0.00 | 34.11 | 4.08 |
2765 | 2887 | 3.759581 | ACAATCTCCATCACTTGCACTT | 58.240 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2910 | 3032 | 5.702670 | AGACATCACAACACATTTACCTCAG | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2916 | 3038 | 4.516698 | ACAACACATTTACCTCAGCTCAAG | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2946 | 3068 | 2.176546 | CGCAACATGGCCGTCAAG | 59.823 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
2966 | 3088 | 2.436109 | GGAAGCACCTTGCCCTCA | 59.564 | 61.111 | 0.00 | 0.00 | 46.52 | 3.86 |
3102 | 3224 | 1.610522 | AGCTTCATTCCACACAGCAAC | 59.389 | 47.619 | 0.00 | 0.00 | 32.58 | 4.17 |
3141 | 3270 | 3.932459 | GCCATGAGCTATGTGTTGC | 57.068 | 52.632 | 0.00 | 0.00 | 38.99 | 4.17 |
3142 | 3271 | 0.028505 | GCCATGAGCTATGTGTTGCG | 59.971 | 55.000 | 0.00 | 0.00 | 38.99 | 4.85 |
3143 | 3272 | 1.372582 | CCATGAGCTATGTGTTGCGT | 58.627 | 50.000 | 0.00 | 0.00 | 34.87 | 5.24 |
3144 | 3273 | 1.063027 | CCATGAGCTATGTGTTGCGTG | 59.937 | 52.381 | 0.00 | 0.00 | 34.87 | 5.34 |
3145 | 3274 | 2.001872 | CATGAGCTATGTGTTGCGTGA | 58.998 | 47.619 | 0.00 | 0.00 | 31.92 | 4.35 |
3146 | 3275 | 1.428448 | TGAGCTATGTGTTGCGTGAC | 58.572 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3147 | 3276 | 0.721718 | GAGCTATGTGTTGCGTGACC | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3148 | 3277 | 1.014044 | AGCTATGTGTTGCGTGACCG | 61.014 | 55.000 | 0.00 | 0.00 | 37.07 | 4.79 |
3149 | 3278 | 1.011968 | GCTATGTGTTGCGTGACCGA | 61.012 | 55.000 | 0.00 | 0.00 | 35.63 | 4.69 |
3150 | 3279 | 1.640428 | CTATGTGTTGCGTGACCGAT | 58.360 | 50.000 | 0.00 | 0.00 | 35.63 | 4.18 |
3151 | 3280 | 1.999735 | CTATGTGTTGCGTGACCGATT | 59.000 | 47.619 | 0.00 | 0.00 | 35.63 | 3.34 |
3152 | 3281 | 0.796312 | ATGTGTTGCGTGACCGATTC | 59.204 | 50.000 | 0.00 | 0.00 | 35.63 | 2.52 |
3153 | 3282 | 0.249699 | TGTGTTGCGTGACCGATTCT | 60.250 | 50.000 | 0.00 | 0.00 | 35.63 | 2.40 |
3154 | 3283 | 0.438830 | GTGTTGCGTGACCGATTCTC | 59.561 | 55.000 | 0.00 | 0.00 | 35.63 | 2.87 |
3155 | 3284 | 0.317160 | TGTTGCGTGACCGATTCTCT | 59.683 | 50.000 | 0.00 | 0.00 | 35.63 | 3.10 |
3156 | 3285 | 0.992802 | GTTGCGTGACCGATTCTCTC | 59.007 | 55.000 | 0.00 | 0.00 | 35.63 | 3.20 |
3157 | 3286 | 0.888619 | TTGCGTGACCGATTCTCTCT | 59.111 | 50.000 | 0.00 | 0.00 | 35.63 | 3.10 |
3158 | 3287 | 0.452184 | TGCGTGACCGATTCTCTCTC | 59.548 | 55.000 | 0.00 | 0.00 | 35.63 | 3.20 |
3159 | 3288 | 0.590230 | GCGTGACCGATTCTCTCTCG | 60.590 | 60.000 | 0.00 | 0.00 | 35.63 | 4.04 |
3160 | 3289 | 1.007580 | CGTGACCGATTCTCTCTCGA | 58.992 | 55.000 | 0.00 | 0.00 | 38.38 | 4.04 |
3161 | 3290 | 1.600013 | CGTGACCGATTCTCTCTCGAT | 59.400 | 52.381 | 0.00 | 0.00 | 38.38 | 3.59 |
3162 | 3291 | 2.349060 | CGTGACCGATTCTCTCTCGATC | 60.349 | 54.545 | 0.00 | 0.00 | 38.38 | 3.69 |
3163 | 3292 | 2.875933 | GTGACCGATTCTCTCTCGATCT | 59.124 | 50.000 | 0.00 | 0.00 | 38.38 | 2.75 |
3164 | 3293 | 4.059511 | GTGACCGATTCTCTCTCGATCTA | 58.940 | 47.826 | 0.00 | 0.00 | 38.38 | 1.98 |
3165 | 3294 | 4.693566 | GTGACCGATTCTCTCTCGATCTAT | 59.306 | 45.833 | 0.00 | 0.00 | 38.38 | 1.98 |
3166 | 3295 | 5.180492 | GTGACCGATTCTCTCTCGATCTATT | 59.820 | 44.000 | 0.00 | 0.00 | 38.38 | 1.73 |
3167 | 3296 | 5.765677 | TGACCGATTCTCTCTCGATCTATTT | 59.234 | 40.000 | 0.00 | 0.00 | 38.38 | 1.40 |
3168 | 3297 | 6.007936 | ACCGATTCTCTCTCGATCTATTTG | 57.992 | 41.667 | 0.00 | 0.00 | 38.38 | 2.32 |
3169 | 3298 | 5.533154 | ACCGATTCTCTCTCGATCTATTTGT | 59.467 | 40.000 | 0.00 | 0.00 | 38.38 | 2.83 |
3170 | 3299 | 5.855925 | CCGATTCTCTCTCGATCTATTTGTG | 59.144 | 44.000 | 0.00 | 0.00 | 38.38 | 3.33 |
3274 | 3458 | 1.271379 | TGTATCGACGACCTTGCTGTT | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3292 | 3476 | 5.942826 | TGCTGTTGGATGTATTTGTATGTGA | 59.057 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3298 | 3482 | 9.691362 | GTTGGATGTATTTGTATGTGAAAACTT | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3337 | 3524 | 7.953173 | TCGTGTGTGTTTATTCAATCGTTATTC | 59.047 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3360 | 3547 | 6.765403 | TCATTTAACATAATCCCTACCTCCG | 58.235 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3397 | 3768 | 6.806249 | CGATGTTTGTGCCAATATTAAGTTGT | 59.194 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
3445 | 3816 | 1.067213 | GTTTGTGTTTGTGTGGTGCCT | 60.067 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
3458 | 3829 | 2.298729 | GTGGTGCCTTTTTATGCCAGAA | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3459 | 3830 | 2.968574 | TGGTGCCTTTTTATGCCAGAAA | 59.031 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
3460 | 3831 | 3.006752 | TGGTGCCTTTTTATGCCAGAAAG | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3462 | 3833 | 4.237724 | GTGCCTTTTTATGCCAGAAAGAC | 58.762 | 43.478 | 0.00 | 0.00 | 33.35 | 3.01 |
3463 | 3834 | 3.894427 | TGCCTTTTTATGCCAGAAAGACA | 59.106 | 39.130 | 0.00 | 0.00 | 33.35 | 3.41 |
3464 | 3835 | 4.527816 | TGCCTTTTTATGCCAGAAAGACAT | 59.472 | 37.500 | 0.00 | 0.00 | 33.35 | 3.06 |
3465 | 3836 | 5.011943 | TGCCTTTTTATGCCAGAAAGACATT | 59.988 | 36.000 | 0.00 | 0.00 | 33.35 | 2.71 |
3466 | 3837 | 6.210385 | TGCCTTTTTATGCCAGAAAGACATTA | 59.790 | 34.615 | 0.00 | 0.00 | 33.35 | 1.90 |
3467 | 3838 | 6.531594 | GCCTTTTTATGCCAGAAAGACATTAC | 59.468 | 38.462 | 0.00 | 0.00 | 33.35 | 1.89 |
3468 | 3839 | 7.601856 | CCTTTTTATGCCAGAAAGACATTACA | 58.398 | 34.615 | 0.00 | 0.00 | 33.35 | 2.41 |
3469 | 3840 | 7.756722 | CCTTTTTATGCCAGAAAGACATTACAG | 59.243 | 37.037 | 0.00 | 0.00 | 33.35 | 2.74 |
3470 | 3841 | 7.994425 | TTTTATGCCAGAAAGACATTACAGA | 57.006 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3471 | 3842 | 7.615582 | TTTATGCCAGAAAGACATTACAGAG | 57.384 | 36.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3472 | 3843 | 4.623932 | TGCCAGAAAGACATTACAGAGT | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
3473 | 3844 | 4.569943 | TGCCAGAAAGACATTACAGAGTC | 58.430 | 43.478 | 0.00 | 0.00 | 35.02 | 3.36 |
3474 | 3845 | 3.614616 | GCCAGAAAGACATTACAGAGTCG | 59.385 | 47.826 | 0.00 | 0.00 | 39.67 | 4.18 |
3527 | 3898 | 4.058124 | TGTCTTGTTTTCAGATCGTCAGG | 58.942 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3537 | 3908 | 2.874086 | CAGATCGTCAGGCATTGCATTA | 59.126 | 45.455 | 11.39 | 0.00 | 0.00 | 1.90 |
3641 | 4012 | 5.234543 | GCTCAAAACGGATCCTGACTAATAC | 59.765 | 44.000 | 10.75 | 0.00 | 0.00 | 1.89 |
3647 | 4018 | 5.855045 | ACGGATCCTGACTAATACAAATCC | 58.145 | 41.667 | 10.75 | 0.00 | 0.00 | 3.01 |
3654 | 4025 | 6.672218 | TCCTGACTAATACAAATCCCTCTGAA | 59.328 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3655 | 4026 | 6.763610 | CCTGACTAATACAAATCCCTCTGAAC | 59.236 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
3658 | 4029 | 6.653989 | ACTAATACAAATCCCTCTGAACTGG | 58.346 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3686 | 4057 | 7.164803 | CCTTTTATCCCTCTCTATGGTGATTC | 58.835 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
3708 | 4079 | 1.578926 | CGGCTTCATCAAAACCGCA | 59.421 | 52.632 | 0.00 | 0.00 | 37.05 | 5.69 |
3731 | 4385 | 0.389166 | GCTCAGTCACCTCCTTGTCG | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3742 | 4396 | 0.398098 | TCCTTGTCGGGGATAGGGAC | 60.398 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3748 | 4402 | 2.446036 | GGGGATAGGGACACGCCT | 60.446 | 66.667 | 0.00 | 0.00 | 36.66 | 5.52 |
3753 | 4407 | 1.700955 | GATAGGGACACGCCTTCCTA | 58.299 | 55.000 | 0.00 | 0.00 | 36.45 | 2.94 |
3757 | 4411 | 1.422402 | AGGGACACGCCTTCCTAAAAA | 59.578 | 47.619 | 0.00 | 0.00 | 36.66 | 1.94 |
3783 | 4438 | 2.459060 | TTGCCACTTGATTTGCATGG | 57.541 | 45.000 | 0.00 | 0.00 | 33.08 | 3.66 |
3784 | 4439 | 0.609151 | TGCCACTTGATTTGCATGGG | 59.391 | 50.000 | 2.61 | 0.00 | 29.11 | 4.00 |
3803 | 4458 | 4.960938 | TGGGTATGATGCTTGTATCTGTC | 58.039 | 43.478 | 0.90 | 0.00 | 0.00 | 3.51 |
3804 | 4459 | 4.202357 | TGGGTATGATGCTTGTATCTGTCC | 60.202 | 45.833 | 0.90 | 1.09 | 0.00 | 4.02 |
3830 | 4485 | 2.164624 | CAGTCTTCTAAGCCAGCGTACT | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3837 | 4492 | 1.975660 | AAGCCAGCGTACTTTTTGGA | 58.024 | 45.000 | 6.13 | 0.00 | 32.34 | 3.53 |
3844 | 4499 | 3.485743 | CAGCGTACTTTTTGGAAAACAGC | 59.514 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3848 | 4503 | 5.047188 | CGTACTTTTTGGAAAACAGCCAAT | 58.953 | 37.500 | 0.00 | 0.00 | 44.30 | 3.16 |
3849 | 4504 | 5.051106 | CGTACTTTTTGGAAAACAGCCAATG | 60.051 | 40.000 | 0.00 | 0.00 | 44.30 | 2.82 |
3850 | 4505 | 3.627123 | ACTTTTTGGAAAACAGCCAATGC | 59.373 | 39.130 | 0.00 | 0.00 | 44.30 | 3.56 |
3851 | 4506 | 2.252976 | TTTGGAAAACAGCCAATGCC | 57.747 | 45.000 | 0.00 | 0.00 | 44.30 | 4.40 |
3856 | 4511 | 0.763986 | AAAACAGCCAATGCCCCACT | 60.764 | 50.000 | 0.00 | 0.00 | 38.69 | 4.00 |
3864 | 4519 | 0.034186 | CAATGCCCCACTAGCCTTGA | 60.034 | 55.000 | 0.00 | 0.00 | 37.87 | 3.02 |
3868 | 4523 | 1.315981 | GCCCCACTAGCCTTGAAAGC | 61.316 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3903 | 4558 | 3.321968 | AGGAAACTTTGAGGGAACATTGC | 59.678 | 43.478 | 0.00 | 0.00 | 37.44 | 3.56 |
3908 | 4563 | 2.307496 | TTGAGGGAACATTGCCACAT | 57.693 | 45.000 | 4.87 | 0.00 | 41.75 | 3.21 |
3917 | 4572 | 6.430616 | AGGGAACATTGCCACATAAATTTTTG | 59.569 | 34.615 | 4.87 | 7.04 | 41.75 | 2.44 |
3950 | 4605 | 8.528044 | AAACCATAGGAAAGTTACAGTTTTCA | 57.472 | 30.769 | 0.00 | 0.00 | 35.51 | 2.69 |
3965 | 4620 | 5.137403 | CAGTTTTCACCGAATTTACACTCG | 58.863 | 41.667 | 0.00 | 0.00 | 34.83 | 4.18 |
4018 | 4676 | 4.589908 | ACTCATTACTGGATTGGACCAAC | 58.410 | 43.478 | 9.67 | 3.70 | 39.59 | 3.77 |
4019 | 4677 | 3.947834 | CTCATTACTGGATTGGACCAACC | 59.052 | 47.826 | 9.67 | 13.22 | 39.59 | 3.77 |
4020 | 4678 | 3.591527 | TCATTACTGGATTGGACCAACCT | 59.408 | 43.478 | 9.67 | 0.00 | 39.59 | 3.50 |
4021 | 4679 | 4.044065 | TCATTACTGGATTGGACCAACCTT | 59.956 | 41.667 | 9.67 | 7.26 | 39.59 | 3.50 |
4086 | 4744 | 5.694995 | TGTTTTCTTGTTCCTCCTCTTCAT | 58.305 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 9.153721 | CAGTTTGCATATGTTTTTGTATCCAAT | 57.846 | 29.630 | 4.29 | 0.00 | 0.00 | 3.16 |
24 | 25 | 3.491342 | TGGCCAGTTAACAGTTTGCATA | 58.509 | 40.909 | 0.00 | 0.00 | 0.00 | 3.14 |
167 | 168 | 3.078837 | GTTTAACTTCTGCCGATTGGGA | 58.921 | 45.455 | 0.00 | 0.00 | 38.47 | 4.37 |
196 | 197 | 5.645929 | TGTGTGATAAAGAACCATAACGCAT | 59.354 | 36.000 | 0.00 | 0.00 | 0.00 | 4.73 |
200 | 201 | 6.879458 | AGGACTGTGTGATAAAGAACCATAAC | 59.121 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
211 | 212 | 8.918202 | ATCTTTGTTTTAGGACTGTGTGATAA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 1.75 |
242 | 243 | 4.083003 | TCGCATCTTACATGTGTTTTTCCC | 60.083 | 41.667 | 9.11 | 0.00 | 0.00 | 3.97 |
243 | 244 | 5.041951 | TCGCATCTTACATGTGTTTTTCC | 57.958 | 39.130 | 9.11 | 0.00 | 0.00 | 3.13 |
251 | 252 | 7.334421 | AGAGTGTTTTTATCGCATCTTACATGT | 59.666 | 33.333 | 2.69 | 2.69 | 0.00 | 3.21 |
255 | 256 | 8.630278 | TCTAGAGTGTTTTTATCGCATCTTAC | 57.370 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
263 | 264 | 8.759641 | CCAGATTCATCTAGAGTGTTTTTATCG | 58.240 | 37.037 | 0.00 | 0.00 | 34.85 | 2.92 |
292 | 293 | 0.306533 | TCTTTTTGACACGGCTTCGC | 59.693 | 50.000 | 0.00 | 0.00 | 37.41 | 4.70 |
315 | 316 | 2.846193 | TCAACAGCTAAGTTCGCCTTT | 58.154 | 42.857 | 0.00 | 0.00 | 34.46 | 3.11 |
352 | 353 | 7.604164 | AGCTGACCCGATCTATACATTAAATTG | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
353 | 354 | 7.680730 | AGCTGACCCGATCTATACATTAAATT | 58.319 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
355 | 356 | 6.665992 | AGCTGACCCGATCTATACATTAAA | 57.334 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
369 | 370 | 1.066143 | ACCAATTGTCTAGCTGACCCG | 60.066 | 52.381 | 4.43 | 1.39 | 44.75 | 5.28 |
400 | 402 | 9.899661 | ATGGCATTGTAGACTAACTTGTATTTA | 57.100 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
409 | 411 | 7.611213 | AACTGTTATGGCATTGTAGACTAAC | 57.389 | 36.000 | 4.78 | 1.69 | 0.00 | 2.34 |
410 | 412 | 7.880713 | TCAAACTGTTATGGCATTGTAGACTAA | 59.119 | 33.333 | 4.78 | 0.00 | 0.00 | 2.24 |
418 | 420 | 4.022068 | ACTGGTCAAACTGTTATGGCATTG | 60.022 | 41.667 | 4.78 | 0.00 | 0.00 | 2.82 |
429 | 431 | 5.147330 | TGTAGGTATCACTGGTCAAACTG | 57.853 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
435 | 437 | 4.935808 | CCTGTTTTGTAGGTATCACTGGTC | 59.064 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
441 | 443 | 5.570205 | TTCACCCTGTTTTGTAGGTATCA | 57.430 | 39.130 | 0.00 | 0.00 | 33.31 | 2.15 |
443 | 445 | 7.773690 | GTCATATTCACCCTGTTTTGTAGGTAT | 59.226 | 37.037 | 0.00 | 0.00 | 33.31 | 2.73 |
514 | 516 | 8.828688 | ATATAAGAATTACCGTGCCTTACTTC | 57.171 | 34.615 | 0.00 | 0.00 | 30.46 | 3.01 |
563 | 565 | 5.629020 | GCGCAATCTTTTTCATTACAGAACA | 59.371 | 36.000 | 0.30 | 0.00 | 0.00 | 3.18 |
801 | 807 | 2.019984 | GACTCATGGTTGCAAGGGATC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
821 | 827 | 7.543520 | AGGAAACTAAATAGAACGACTTTACCG | 59.456 | 37.037 | 0.00 | 0.00 | 40.61 | 4.02 |
853 | 859 | 7.711772 | TCAGACTTTTTAGGTCGATTTTGTGTA | 59.288 | 33.333 | 0.00 | 0.00 | 38.58 | 2.90 |
873 | 879 | 6.267471 | GGATCTACAAGAATCCATCTCAGACT | 59.733 | 42.308 | 0.00 | 0.00 | 37.42 | 3.24 |
944 | 950 | 1.227383 | GACGGGCTGGGGAAATCAT | 59.773 | 57.895 | 0.00 | 0.00 | 0.00 | 2.45 |
983 | 989 | 1.191535 | CATGGGGAGGTACTTGACGA | 58.808 | 55.000 | 0.00 | 0.00 | 41.55 | 4.20 |
985 | 991 | 0.912486 | AGCATGGGGAGGTACTTGAC | 59.088 | 55.000 | 0.00 | 0.00 | 41.55 | 3.18 |
988 | 994 | 0.044855 | AGGAGCATGGGGAGGTACTT | 59.955 | 55.000 | 0.00 | 0.00 | 41.55 | 2.24 |
1049 | 1061 | 2.185350 | CGCGGACCTTGAGCTCAT | 59.815 | 61.111 | 19.04 | 1.77 | 0.00 | 2.90 |
1151 | 1166 | 1.543802 | CGATCTCATCCTGGCTAGGTC | 59.456 | 57.143 | 16.69 | 4.05 | 44.88 | 3.85 |
1164 | 1179 | 1.077716 | TCTGGCCTCGTCGATCTCA | 60.078 | 57.895 | 3.32 | 0.00 | 0.00 | 3.27 |
1165 | 1180 | 0.816018 | TCTCTGGCCTCGTCGATCTC | 60.816 | 60.000 | 3.32 | 0.00 | 0.00 | 2.75 |
1307 | 1417 | 8.023128 | CACTCCGATCTTGTGACAAATTTTTAT | 58.977 | 33.333 | 0.00 | 0.00 | 33.95 | 1.40 |
1320 | 1430 | 2.125512 | GCCGCACTCCGATCTTGT | 60.126 | 61.111 | 0.00 | 0.00 | 40.02 | 3.16 |
1369 | 1482 | 0.689412 | TGGACATCGCTATGGTCCCA | 60.689 | 55.000 | 13.50 | 9.80 | 37.43 | 4.37 |
1374 | 1487 | 1.300931 | CCGGTGGACATCGCTATGG | 60.301 | 63.158 | 2.99 | 0.00 | 37.43 | 2.74 |
1407 | 1520 | 7.162082 | TGACTAATTTCTTCAGTTCTCCCTTC | 58.838 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
1464 | 1577 | 4.757594 | AGCAGAAGATCATCACTTGAGTC | 58.242 | 43.478 | 0.10 | 0.00 | 37.89 | 3.36 |
1553 | 1666 | 1.565305 | CAAGCTCGTCCTACTGATGC | 58.435 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1560 | 1673 | 2.050350 | CCGGACCAAGCTCGTCCTA | 61.050 | 63.158 | 23.54 | 0.00 | 46.48 | 2.94 |
1587 | 1700 | 3.535629 | CTCCACACGGCCTTCAGCA | 62.536 | 63.158 | 0.00 | 0.00 | 46.50 | 4.41 |
1659 | 1772 | 0.847373 | AGATCTCCGCTACCTCCTCA | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1812 | 1925 | 0.394488 | TCGGCAGGTTGTCCACAAAA | 60.394 | 50.000 | 0.00 | 0.00 | 37.63 | 2.44 |
1947 | 2060 | 2.358247 | GTGTTGTCATCCGGCGGT | 60.358 | 61.111 | 27.32 | 10.72 | 0.00 | 5.68 |
2012 | 2128 | 0.391263 | CCGGTAGGCTTGGTGAAGAC | 60.391 | 60.000 | 0.00 | 0.00 | 37.51 | 3.01 |
2076 | 2192 | 0.689055 | TGCAGATGCTCTTGAGGTGT | 59.311 | 50.000 | 6.35 | 0.00 | 42.66 | 4.16 |
2214 | 2330 | 3.936453 | GGTAAATGTAGTTCATGTGCCGA | 59.064 | 43.478 | 0.00 | 0.00 | 36.93 | 5.54 |
2262 | 2378 | 0.738975 | CCGTCGTCATCTTCAGGCTA | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
2364 | 2480 | 2.403252 | ATTCCTTCTTGCCGTACCAG | 57.597 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2517 | 2633 | 5.073144 | GGATGGAGGAGTAACCCATATTGAA | 59.927 | 44.000 | 0.00 | 0.00 | 40.50 | 2.69 |
2529 | 2645 | 2.771943 | GACATTGGTGGATGGAGGAGTA | 59.228 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2535 | 2654 | 0.107703 | GCTCGACATTGGTGGATGGA | 60.108 | 55.000 | 0.00 | 0.00 | 31.01 | 3.41 |
2539 | 2658 | 0.824109 | CTAGGCTCGACATTGGTGGA | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2549 | 2671 | 1.003233 | TCAGAGTGACACTAGGCTCGA | 59.997 | 52.381 | 8.41 | 0.44 | 33.57 | 4.04 |
2553 | 2675 | 4.342378 | TCCATATTCAGAGTGACACTAGGC | 59.658 | 45.833 | 8.41 | 0.00 | 0.00 | 3.93 |
2861 | 2983 | 0.677288 | AAAGTCGACGGTGGTGATGA | 59.323 | 50.000 | 10.46 | 0.00 | 0.00 | 2.92 |
2910 | 3032 | 1.399791 | CGCCAAAGGATCTTCTTGAGC | 59.600 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
2916 | 3038 | 0.881118 | TGTTGCGCCAAAGGATCTTC | 59.119 | 50.000 | 4.18 | 0.00 | 0.00 | 2.87 |
2966 | 3088 | 2.079925 | GCCAAACGATCTTCTTGAGCT | 58.920 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
3134 | 3263 | 0.249699 | AGAATCGGTCACGCAACACA | 60.250 | 50.000 | 0.00 | 0.00 | 40.69 | 3.72 |
3135 | 3264 | 0.438830 | GAGAATCGGTCACGCAACAC | 59.561 | 55.000 | 0.00 | 0.00 | 40.69 | 3.32 |
3136 | 3265 | 0.317160 | AGAGAATCGGTCACGCAACA | 59.683 | 50.000 | 0.00 | 0.00 | 42.67 | 3.33 |
3137 | 3266 | 0.992802 | GAGAGAATCGGTCACGCAAC | 59.007 | 55.000 | 0.00 | 0.00 | 42.67 | 4.17 |
3138 | 3267 | 0.888619 | AGAGAGAATCGGTCACGCAA | 59.111 | 50.000 | 0.00 | 0.00 | 42.67 | 4.85 |
3139 | 3268 | 0.452184 | GAGAGAGAATCGGTCACGCA | 59.548 | 55.000 | 0.00 | 0.00 | 42.67 | 5.24 |
3140 | 3269 | 0.590230 | CGAGAGAGAATCGGTCACGC | 60.590 | 60.000 | 0.00 | 0.00 | 42.67 | 5.34 |
3141 | 3270 | 1.007580 | TCGAGAGAGAATCGGTCACG | 58.992 | 55.000 | 0.00 | 0.00 | 42.67 | 4.35 |
3142 | 3271 | 3.262135 | GATCGAGAGAGAATCGGTCAC | 57.738 | 52.381 | 3.89 | 0.00 | 46.92 | 3.67 |
3154 | 3283 | 4.497251 | CACGACACACAAATAGATCGAGAG | 59.503 | 45.833 | 0.00 | 0.00 | 33.88 | 3.20 |
3155 | 3284 | 4.412207 | CACGACACACAAATAGATCGAGA | 58.588 | 43.478 | 0.00 | 0.00 | 33.88 | 4.04 |
3156 | 3285 | 3.000674 | GCACGACACACAAATAGATCGAG | 60.001 | 47.826 | 0.00 | 0.00 | 33.88 | 4.04 |
3157 | 3286 | 2.921121 | GCACGACACACAAATAGATCGA | 59.079 | 45.455 | 0.00 | 0.00 | 33.88 | 3.59 |
3158 | 3287 | 2.029244 | GGCACGACACACAAATAGATCG | 59.971 | 50.000 | 0.00 | 0.00 | 35.74 | 3.69 |
3159 | 3288 | 3.062639 | CAGGCACGACACACAAATAGATC | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
3160 | 3289 | 3.002791 | CAGGCACGACACACAAATAGAT | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
3161 | 3290 | 2.036604 | TCAGGCACGACACACAAATAGA | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
3162 | 3291 | 2.412870 | TCAGGCACGACACACAAATAG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
3163 | 3292 | 2.535012 | TCAGGCACGACACACAAATA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3164 | 3293 | 1.674359 | TTCAGGCACGACACACAAAT | 58.326 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3165 | 3294 | 1.674359 | ATTCAGGCACGACACACAAA | 58.326 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3166 | 3295 | 2.535012 | TATTCAGGCACGACACACAA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3167 | 3296 | 2.224185 | ACTTATTCAGGCACGACACACA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
3168 | 3297 | 2.413837 | ACTTATTCAGGCACGACACAC | 58.586 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
3169 | 3298 | 2.831685 | ACTTATTCAGGCACGACACA | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3170 | 3299 | 4.032900 | CACATACTTATTCAGGCACGACAC | 59.967 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
3312 | 3496 | 7.742525 | TGAATAACGATTGAATAAACACACACG | 59.257 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
3360 | 3547 | 4.854839 | GCACAAACATCGTATAAACCAACC | 59.145 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
3397 | 3768 | 3.817084 | CAGTTTCTGTCATTCAAGCTCCA | 59.183 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3445 | 3816 | 8.402798 | TCTGTAATGTCTTTCTGGCATAAAAA | 57.597 | 30.769 | 0.00 | 0.00 | 40.61 | 1.94 |
3458 | 3829 | 3.735208 | CGGATGCGACTCTGTAATGTCTT | 60.735 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3459 | 3830 | 2.223595 | CGGATGCGACTCTGTAATGTCT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3460 | 3831 | 2.120232 | CGGATGCGACTCTGTAATGTC | 58.880 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3462 | 3833 | 0.855349 | GCGGATGCGACTCTGTAATG | 59.145 | 55.000 | 12.10 | 0.00 | 0.00 | 1.90 |
3463 | 3834 | 0.249489 | GGCGGATGCGACTCTGTAAT | 60.249 | 55.000 | 12.10 | 0.00 | 44.10 | 1.89 |
3464 | 3835 | 1.141019 | GGCGGATGCGACTCTGTAA | 59.859 | 57.895 | 12.10 | 0.00 | 44.10 | 2.41 |
3465 | 3836 | 2.782222 | GGGCGGATGCGACTCTGTA | 61.782 | 63.158 | 13.72 | 0.00 | 44.10 | 2.74 |
3466 | 3837 | 4.148825 | GGGCGGATGCGACTCTGT | 62.149 | 66.667 | 13.72 | 0.00 | 44.10 | 3.41 |
3467 | 3838 | 3.376935 | AAGGGCGGATGCGACTCTG | 62.377 | 63.158 | 13.72 | 0.00 | 44.10 | 3.35 |
3468 | 3839 | 3.077556 | AAGGGCGGATGCGACTCT | 61.078 | 61.111 | 13.72 | 4.88 | 44.10 | 3.24 |
3469 | 3840 | 2.892425 | CAAGGGCGGATGCGACTC | 60.892 | 66.667 | 13.72 | 2.15 | 44.10 | 3.36 |
3472 | 3843 | 2.601194 | TAATGCAAGGGCGGATGCGA | 62.601 | 55.000 | 12.10 | 0.00 | 45.47 | 5.10 |
3473 | 3844 | 2.186160 | TAATGCAAGGGCGGATGCG | 61.186 | 57.895 | 0.65 | 0.65 | 45.47 | 4.73 |
3474 | 3845 | 1.360192 | GTAATGCAAGGGCGGATGC | 59.640 | 57.895 | 0.00 | 1.41 | 45.35 | 3.91 |
3516 | 3887 | 1.306148 | ATGCAATGCCTGACGATCTG | 58.694 | 50.000 | 1.53 | 0.00 | 0.00 | 2.90 |
3527 | 3898 | 5.745294 | ACGATCTCAAAACATAATGCAATGC | 59.255 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
3537 | 3908 | 5.181811 | TCATTTCAGCACGATCTCAAAACAT | 59.818 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3641 | 4012 | 2.363683 | GCTCCAGTTCAGAGGGATTTG | 58.636 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
3647 | 4018 | 2.575805 | AAAAGGCTCCAGTTCAGAGG | 57.424 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3654 | 4025 | 2.774809 | GAGAGGGATAAAAGGCTCCAGT | 59.225 | 50.000 | 0.00 | 0.00 | 32.90 | 4.00 |
3655 | 4026 | 3.044894 | AGAGAGGGATAAAAGGCTCCAG | 58.955 | 50.000 | 0.00 | 0.00 | 32.90 | 3.86 |
3658 | 4029 | 4.595350 | ACCATAGAGAGGGATAAAAGGCTC | 59.405 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
3731 | 4385 | 2.041206 | GAAGGCGTGTCCCTATCCCC | 62.041 | 65.000 | 0.00 | 0.00 | 33.97 | 4.81 |
3757 | 4411 | 4.067192 | GCAAATCAAGTGGCAAATCCTTT | 58.933 | 39.130 | 0.00 | 0.00 | 35.26 | 3.11 |
3760 | 4414 | 3.042871 | TGCAAATCAAGTGGCAAATCC | 57.957 | 42.857 | 0.00 | 0.00 | 32.54 | 3.01 |
3761 | 4415 | 3.372822 | CCATGCAAATCAAGTGGCAAATC | 59.627 | 43.478 | 0.00 | 0.00 | 40.02 | 2.17 |
3762 | 4416 | 3.340034 | CCATGCAAATCAAGTGGCAAAT | 58.660 | 40.909 | 0.00 | 0.00 | 40.02 | 2.32 |
3763 | 4417 | 2.550423 | CCCATGCAAATCAAGTGGCAAA | 60.550 | 45.455 | 0.00 | 0.00 | 40.02 | 3.68 |
3764 | 4418 | 1.002201 | CCCATGCAAATCAAGTGGCAA | 59.998 | 47.619 | 0.00 | 0.00 | 40.02 | 4.52 |
3783 | 4438 | 4.040952 | AGGGACAGATACAAGCATCATACC | 59.959 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
3784 | 4439 | 4.993584 | CAGGGACAGATACAAGCATCATAC | 59.006 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
3803 | 4458 | 0.107459 | GGCTTAGAAGACTGGCAGGG | 60.107 | 60.000 | 20.34 | 0.00 | 0.00 | 4.45 |
3804 | 4459 | 0.615331 | TGGCTTAGAAGACTGGCAGG | 59.385 | 55.000 | 20.34 | 0.58 | 34.24 | 4.85 |
3830 | 4485 | 2.948315 | GGCATTGGCTGTTTTCCAAAAA | 59.052 | 40.909 | 2.42 | 0.00 | 45.63 | 1.94 |
3837 | 4492 | 0.763986 | AGTGGGGCATTGGCTGTTTT | 60.764 | 50.000 | 10.31 | 0.00 | 40.87 | 2.43 |
3844 | 4499 | 1.039233 | CAAGGCTAGTGGGGCATTGG | 61.039 | 60.000 | 5.38 | 0.00 | 44.34 | 3.16 |
3848 | 4503 | 0.038166 | CTTTCAAGGCTAGTGGGGCA | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3849 | 4504 | 1.315981 | GCTTTCAAGGCTAGTGGGGC | 61.316 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
3850 | 4505 | 0.329596 | AGCTTTCAAGGCTAGTGGGG | 59.670 | 55.000 | 0.00 | 0.00 | 38.36 | 4.96 |
3851 | 4506 | 1.815003 | CAAGCTTTCAAGGCTAGTGGG | 59.185 | 52.381 | 0.00 | 0.00 | 39.30 | 4.61 |
3856 | 4511 | 0.250727 | ACGCCAAGCTTTCAAGGCTA | 60.251 | 50.000 | 19.86 | 0.00 | 44.85 | 3.93 |
3864 | 4519 | 1.754226 | TCCTTTGAAACGCCAAGCTTT | 59.246 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
3894 | 4549 | 6.429385 | TCCAAAAATTTATGTGGCAATGTTCC | 59.571 | 34.615 | 9.56 | 0.00 | 0.00 | 3.62 |
3903 | 4558 | 7.817478 | GGTTTAGGAGTCCAAAAATTTATGTGG | 59.183 | 37.037 | 12.86 | 8.51 | 0.00 | 4.17 |
3908 | 4563 | 9.250246 | CCTATGGTTTAGGAGTCCAAAAATTTA | 57.750 | 33.333 | 12.86 | 3.29 | 36.85 | 1.40 |
3917 | 4572 | 5.695424 | ACTTTCCTATGGTTTAGGAGTCC | 57.305 | 43.478 | 0.00 | 0.00 | 43.85 | 3.85 |
3965 | 4620 | 9.511272 | TTTTCTAGATTTTAGTTTGGGTAGACC | 57.489 | 33.333 | 0.00 | 0.00 | 40.81 | 3.85 |
4000 | 4658 | 4.569865 | GGAAGGTTGGTCCAATCCAGTAAT | 60.570 | 45.833 | 11.48 | 0.00 | 41.32 | 1.89 |
4018 | 4676 | 4.589908 | AGTAGTAATGTGCCAAAGGAAGG | 58.410 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
4019 | 4677 | 5.352569 | CAGAGTAGTAATGTGCCAAAGGAAG | 59.647 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4020 | 4678 | 5.245531 | CAGAGTAGTAATGTGCCAAAGGAA | 58.754 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
4021 | 4679 | 4.832248 | CAGAGTAGTAATGTGCCAAAGGA | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
4086 | 4744 | 5.287674 | AGAATAGAAGATGCTTGCAGCTA | 57.712 | 39.130 | 13.84 | 6.74 | 42.97 | 3.32 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.