Multiple sequence alignment - TraesCS7D01G515100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G515100 chr7D 100.000 2885 0 0 1 2885 615773917 615776801 0.000000e+00 5328.0
1 TraesCS7D01G515100 chr7D 82.699 1445 125 72 712 2111 615559714 615558350 0.000000e+00 1168.0
2 TraesCS7D01G515100 chr7D 88.723 940 72 17 997 1912 615765508 615766437 0.000000e+00 1118.0
3 TraesCS7D01G515100 chr7D 85.849 530 64 10 2358 2885 141558432 141558952 1.170000e-153 553.0
4 TraesCS7D01G515100 chr7D 84.981 526 53 18 2364 2885 623699141 623699644 7.130000e-141 510.0
5 TraesCS7D01G515100 chr7D 83.080 526 74 13 2364 2885 613908806 613909320 5.630000e-127 464.0
6 TraesCS7D01G515100 chr7D 87.166 187 17 6 2694 2877 142140677 142140495 3.770000e-49 206.0
7 TraesCS7D01G515100 chr7D 76.279 215 32 13 2140 2347 615555643 615555441 2.370000e-16 97.1
8 TraesCS7D01G515100 chr7A 87.247 2321 179 46 633 2885 708326147 708328418 0.000000e+00 2538.0
9 TraesCS7D01G515100 chr7A 88.581 937 76 21 997 1912 708319093 708320019 0.000000e+00 1109.0
10 TraesCS7D01G515100 chr7A 85.000 400 15 16 3 383 708325549 708325922 5.870000e-97 364.0
11 TraesCS7D01G515100 chr7A 86.425 221 17 7 683 893 708318804 708319021 2.240000e-56 230.0
12 TraesCS7D01G515100 chr7B 86.295 1598 134 48 662 2232 708552142 708553681 0.000000e+00 1659.0
13 TraesCS7D01G515100 chr7B 80.604 1722 186 94 683 2338 708445776 708447415 0.000000e+00 1194.0
14 TraesCS7D01G515100 chr7B 82.603 1460 131 71 683 2111 708511324 708512691 0.000000e+00 1175.0
15 TraesCS7D01G515100 chr7B 80.088 1582 182 72 803 2331 708529259 708530760 0.000000e+00 1053.0
16 TraesCS7D01G515100 chr7B 87.476 519 57 7 2364 2878 453041518 453042032 2.480000e-165 592.0
17 TraesCS7D01G515100 chr7B 81.905 525 84 9 2365 2885 336912326 336912843 1.590000e-117 433.0
18 TraesCS7D01G515100 chr3D 87.810 525 56 6 2364 2885 437945492 437944973 2.460000e-170 608.0
19 TraesCS7D01G515100 chr3D 93.671 237 9 2 400 636 351857690 351857460 1.650000e-92 350.0
20 TraesCS7D01G515100 chr3D 78.182 385 53 13 5 374 85445577 85445209 1.740000e-52 217.0
21 TraesCS7D01G515100 chr3D 76.136 176 32 10 1136 1306 180470733 180470563 1.840000e-12 84.2
22 TraesCS7D01G515100 chr6D 87.623 509 52 8 2358 2863 83538559 83539059 5.360000e-162 580.0
23 TraesCS7D01G515100 chr6D 85.625 320 46 0 1009 1328 142139101 142138782 1.280000e-88 337.0
24 TraesCS7D01G515100 chr6D 86.957 92 9 3 2733 2823 458464647 458464558 1.830000e-17 100.0
25 TraesCS7D01G515100 chr2B 87.830 493 55 3 2358 2850 87829864 87830351 8.970000e-160 573.0
26 TraesCS7D01G515100 chr2B 81.156 398 36 16 4 374 657876345 657876730 1.690000e-72 283.0
27 TraesCS7D01G515100 chr2B 84.685 222 16 5 3 206 258660306 258660085 3.770000e-49 206.0
28 TraesCS7D01G515100 chr5A 85.874 538 63 8 2353 2885 650200765 650201294 6.980000e-156 560.0
29 TraesCS7D01G515100 chr1B 85.579 527 67 8 2364 2885 33471808 33471286 7.030000e-151 544.0
30 TraesCS7D01G515100 chr5D 85.261 536 64 8 2358 2885 521873681 521874209 3.270000e-149 538.0
31 TraesCS7D01G515100 chr5D 93.671 237 9 2 400 636 71758791 71759021 1.650000e-92 350.0
32 TraesCS7D01G515100 chr1D 83.774 530 72 8 2358 2885 363457152 363457669 9.290000e-135 490.0
33 TraesCS7D01G515100 chr1D 78.670 361 44 15 3 340 342128273 342128623 2.910000e-50 209.0
34 TraesCS7D01G515100 chr5B 83.396 530 72 14 2358 2885 537922889 537923404 7.230000e-131 477.0
35 TraesCS7D01G515100 chr5B 93.697 238 9 2 400 637 156041648 156041417 4.570000e-93 351.0
36 TraesCS7D01G515100 chr5B 75.000 224 39 17 1113 1324 63253736 63253518 1.420000e-13 87.9
37 TraesCS7D01G515100 chr6B 83.112 527 70 12 2365 2885 707795227 707795740 2.030000e-126 462.0
38 TraesCS7D01G515100 chr6B 85.312 320 47 0 1009 1328 245985739 245985420 5.960000e-87 331.0
39 TraesCS7D01G515100 chr4D 95.082 244 6 1 396 639 348143305 348143542 2.100000e-101 379.0
40 TraesCS7D01G515100 chr4D 87.143 70 9 0 1234 1303 28881899 28881968 2.380000e-11 80.5
41 TraesCS7D01G515100 chr4D 90.385 52 5 0 1252 1303 80836698 80836749 5.160000e-08 69.4
42 TraesCS7D01G515100 chrUn 93.750 240 9 1 399 638 91741914 91741681 3.540000e-94 355.0
43 TraesCS7D01G515100 chr2D 93.697 238 9 2 400 637 529900328 529900559 4.570000e-93 351.0
44 TraesCS7D01G515100 chr2D 93.991 233 8 1 400 632 379784802 379784576 5.920000e-92 348.0
45 TraesCS7D01G515100 chr1A 93.724 239 7 2 400 636 291630166 291630398 4.570000e-93 351.0
46 TraesCS7D01G515100 chr3B 91.304 253 15 2 387 638 132517188 132516942 3.560000e-89 339.0
47 TraesCS7D01G515100 chr3B 77.604 384 57 10 5 374 135682584 135682216 3.770000e-49 206.0
48 TraesCS7D01G515100 chr3A 81.266 395 37 16 3 374 658929917 658929537 4.710000e-73 285.0
49 TraesCS7D01G515100 chr3A 81.266 395 36 15 3 374 658934767 658934388 4.710000e-73 285.0
50 TraesCS7D01G515100 chr3A 76.154 390 55 18 5 374 102362191 102361820 1.370000e-38 171.0
51 TraesCS7D01G515100 chr6A 82.609 345 32 12 3 329 17891189 17890855 2.190000e-71 279.0
52 TraesCS7D01G515100 chr6A 85.455 110 13 1 21 130 3713082 3712976 8.450000e-21 111.0
53 TraesCS7D01G515100 chr4A 74.834 302 54 21 1039 1324 74601102 74600807 1.820000e-22 117.0
54 TraesCS7D01G515100 chr4A 89.394 66 7 0 1238 1303 574841365 574841300 1.840000e-12 84.2
55 TraesCS7D01G515100 chr4B 87.143 70 9 0 1234 1303 41197823 41197892 2.380000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G515100 chr7D 615773917 615776801 2884 False 5328.00 5328 100.0000 1 2885 1 chr7D.!!$F4 2884
1 TraesCS7D01G515100 chr7D 615765508 615766437 929 False 1118.00 1118 88.7230 997 1912 1 chr7D.!!$F3 915
2 TraesCS7D01G515100 chr7D 615555441 615559714 4273 True 632.55 1168 79.4890 712 2347 2 chr7D.!!$R2 1635
3 TraesCS7D01G515100 chr7D 141558432 141558952 520 False 553.00 553 85.8490 2358 2885 1 chr7D.!!$F1 527
4 TraesCS7D01G515100 chr7D 623699141 623699644 503 False 510.00 510 84.9810 2364 2885 1 chr7D.!!$F5 521
5 TraesCS7D01G515100 chr7D 613908806 613909320 514 False 464.00 464 83.0800 2364 2885 1 chr7D.!!$F2 521
6 TraesCS7D01G515100 chr7A 708325549 708328418 2869 False 1451.00 2538 86.1235 3 2885 2 chr7A.!!$F2 2882
7 TraesCS7D01G515100 chr7A 708318804 708320019 1215 False 669.50 1109 87.5030 683 1912 2 chr7A.!!$F1 1229
8 TraesCS7D01G515100 chr7B 708552142 708553681 1539 False 1659.00 1659 86.2950 662 2232 1 chr7B.!!$F6 1570
9 TraesCS7D01G515100 chr7B 708445776 708447415 1639 False 1194.00 1194 80.6040 683 2338 1 chr7B.!!$F3 1655
10 TraesCS7D01G515100 chr7B 708511324 708512691 1367 False 1175.00 1175 82.6030 683 2111 1 chr7B.!!$F4 1428
11 TraesCS7D01G515100 chr7B 708529259 708530760 1501 False 1053.00 1053 80.0880 803 2331 1 chr7B.!!$F5 1528
12 TraesCS7D01G515100 chr7B 453041518 453042032 514 False 592.00 592 87.4760 2364 2878 1 chr7B.!!$F2 514
13 TraesCS7D01G515100 chr7B 336912326 336912843 517 False 433.00 433 81.9050 2365 2885 1 chr7B.!!$F1 520
14 TraesCS7D01G515100 chr3D 437944973 437945492 519 True 608.00 608 87.8100 2364 2885 1 chr3D.!!$R4 521
15 TraesCS7D01G515100 chr6D 83538559 83539059 500 False 580.00 580 87.6230 2358 2863 1 chr6D.!!$F1 505
16 TraesCS7D01G515100 chr5A 650200765 650201294 529 False 560.00 560 85.8740 2353 2885 1 chr5A.!!$F1 532
17 TraesCS7D01G515100 chr1B 33471286 33471808 522 True 544.00 544 85.5790 2364 2885 1 chr1B.!!$R1 521
18 TraesCS7D01G515100 chr5D 521873681 521874209 528 False 538.00 538 85.2610 2358 2885 1 chr5D.!!$F2 527
19 TraesCS7D01G515100 chr1D 363457152 363457669 517 False 490.00 490 83.7740 2358 2885 1 chr1D.!!$F2 527
20 TraesCS7D01G515100 chr5B 537922889 537923404 515 False 477.00 477 83.3960 2358 2885 1 chr5B.!!$F1 527
21 TraesCS7D01G515100 chr6B 707795227 707795740 513 False 462.00 462 83.1120 2365 2885 1 chr6B.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 756 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.0 0.00 0.0 0.00 5.69 F
758 995 0.036306 CGTACCAGGCAGGAGGTTTT 59.964 55.0 1.67 0.0 41.22 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 2080 0.034477 AACTCGGGGCTAAATGGGTG 60.034 55.0 0.00 0.0 0.00 4.61 R
2181 5317 0.447801 GCGTCAGATGCAAAACGGAT 59.552 50.0 9.95 0.0 35.74 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 3.182173 CACATTGCAATTTCAACGTGGTC 59.818 43.478 9.83 0.00 36.75 4.02
162 171 5.447279 GCATTCAAATTACTCGTCCATTCGT 60.447 40.000 0.00 0.00 0.00 3.85
163 172 6.237996 GCATTCAAATTACTCGTCCATTCGTA 60.238 38.462 0.00 0.00 0.00 3.43
164 173 7.518370 GCATTCAAATTACTCGTCCATTCGTAT 60.518 37.037 0.00 0.00 0.00 3.06
165 174 6.822073 TCAAATTACTCGTCCATTCGTATG 57.178 37.500 0.00 0.00 0.00 2.39
167 176 6.474427 TCAAATTACTCGTCCATTCGTATGTC 59.526 38.462 1.16 0.00 0.00 3.06
173 192 6.570692 ACTCGTCCATTCGTATGTCTTAAAT 58.429 36.000 1.16 0.00 0.00 1.40
221 240 6.684538 AGAGGACCTACATTCCTACAATAGT 58.315 40.000 0.00 0.00 44.03 2.12
262 281 7.011950 CAGTGACTACAACATGACCTTTTGTTA 59.988 37.037 0.00 0.00 34.42 2.41
275 294 8.570068 TGACCTTTTGTTATATTTACACTCCC 57.430 34.615 0.00 0.00 0.00 4.30
276 295 8.387813 TGACCTTTTGTTATATTTACACTCCCT 58.612 33.333 0.00 0.00 0.00 4.20
277 296 9.239551 GACCTTTTGTTATATTTACACTCCCTT 57.760 33.333 0.00 0.00 0.00 3.95
278 297 9.596308 ACCTTTTGTTATATTTACACTCCCTTT 57.404 29.630 0.00 0.00 0.00 3.11
292 311 7.663043 ACACTCCCTTTTTAATTACAAACCA 57.337 32.000 0.00 0.00 0.00 3.67
293 312 8.257602 ACACTCCCTTTTTAATTACAAACCAT 57.742 30.769 0.00 0.00 0.00 3.55
294 313 8.147704 ACACTCCCTTTTTAATTACAAACCATG 58.852 33.333 0.00 0.00 0.00 3.66
295 314 7.117667 CACTCCCTTTTTAATTACAAACCATGC 59.882 37.037 0.00 0.00 0.00 4.06
296 315 7.067496 TCCCTTTTTAATTACAAACCATGCA 57.933 32.000 0.00 0.00 0.00 3.96
309 328 7.088589 ACAAACCATGCAATAGATGTAAGAC 57.911 36.000 0.00 0.00 0.00 3.01
408 639 9.814899 TTCAAAATTTGAATGAAACTAGCAAGA 57.185 25.926 16.28 0.00 44.21 3.02
409 640 9.985730 TCAAAATTTGAATGAAACTAGCAAGAT 57.014 25.926 5.87 0.00 36.59 2.40
411 642 7.823149 AATTTGAATGAAACTAGCAAGATGC 57.177 32.000 0.00 0.00 45.46 3.91
412 643 4.970662 TGAATGAAACTAGCAAGATGCC 57.029 40.909 0.00 0.00 46.52 4.40
413 644 3.696051 TGAATGAAACTAGCAAGATGCCC 59.304 43.478 0.00 0.00 46.52 5.36
414 645 1.737838 TGAAACTAGCAAGATGCCCG 58.262 50.000 0.00 0.00 46.52 6.13
415 646 1.003118 TGAAACTAGCAAGATGCCCGT 59.997 47.619 0.00 0.00 46.52 5.28
416 647 1.398390 GAAACTAGCAAGATGCCCGTG 59.602 52.381 0.00 0.00 46.52 4.94
417 648 1.026718 AACTAGCAAGATGCCCGTGC 61.027 55.000 6.11 6.11 46.52 5.34
420 651 3.737172 GCAAGATGCCCGTGCGTT 61.737 61.111 0.00 0.00 40.20 4.84
421 652 2.176546 CAAGATGCCCGTGCGTTG 59.823 61.111 0.00 0.00 41.78 4.10
422 653 3.737172 AAGATGCCCGTGCGTTGC 61.737 61.111 0.00 0.00 41.78 4.17
425 656 4.118995 ATGCCCGTGCGTTGCATG 62.119 61.111 14.78 4.04 43.66 4.06
430 661 4.624293 CGTGCGTTGCATGGAAAA 57.376 50.000 0.00 0.00 41.91 2.29
431 662 2.132402 CGTGCGTTGCATGGAAAAC 58.868 52.632 0.00 0.00 41.91 2.43
434 665 4.624293 CGTTGCATGGAAAACGCA 57.376 50.000 0.00 0.00 42.17 5.24
435 666 2.132402 CGTTGCATGGAAAACGCAC 58.868 52.632 0.00 0.00 42.17 5.34
436 667 0.593518 CGTTGCATGGAAAACGCACA 60.594 50.000 0.00 0.00 42.17 4.57
437 668 1.782044 GTTGCATGGAAAACGCACAT 58.218 45.000 0.00 0.00 34.87 3.21
438 669 1.456544 GTTGCATGGAAAACGCACATG 59.543 47.619 0.00 0.00 43.58 3.21
439 670 0.957362 TGCATGGAAAACGCACATGA 59.043 45.000 0.00 0.00 43.46 3.07
440 671 1.339291 TGCATGGAAAACGCACATGAA 59.661 42.857 0.00 0.00 43.46 2.57
441 672 1.987770 GCATGGAAAACGCACATGAAG 59.012 47.619 0.00 0.00 43.46 3.02
442 673 2.351641 GCATGGAAAACGCACATGAAGA 60.352 45.455 0.00 0.00 43.46 2.87
443 674 3.674138 GCATGGAAAACGCACATGAAGAT 60.674 43.478 0.00 0.00 43.46 2.40
444 675 3.557577 TGGAAAACGCACATGAAGATG 57.442 42.857 0.00 0.00 35.49 2.90
445 676 2.253603 GGAAAACGCACATGAAGATGC 58.746 47.619 0.00 0.00 38.52 3.91
446 677 2.351641 GGAAAACGCACATGAAGATGCA 60.352 45.455 0.00 0.00 42.17 3.96
447 678 3.504863 GAAAACGCACATGAAGATGCAT 58.495 40.909 0.00 0.00 42.17 3.96
448 679 3.581024 AAACGCACATGAAGATGCATT 57.419 38.095 0.00 0.00 42.17 3.56
449 680 3.581024 AACGCACATGAAGATGCATTT 57.419 38.095 0.00 0.00 42.17 2.32
450 681 2.871133 ACGCACATGAAGATGCATTTG 58.129 42.857 0.00 0.00 42.17 2.32
451 682 2.229543 ACGCACATGAAGATGCATTTGT 59.770 40.909 0.00 0.00 42.17 2.83
452 683 3.439825 ACGCACATGAAGATGCATTTGTA 59.560 39.130 0.00 0.00 42.17 2.41
453 684 4.096833 ACGCACATGAAGATGCATTTGTAT 59.903 37.500 0.00 0.00 42.17 2.29
454 685 4.439776 CGCACATGAAGATGCATTTGTATG 59.560 41.667 0.00 6.54 42.17 2.39
455 686 5.584442 GCACATGAAGATGCATTTGTATGA 58.416 37.500 16.18 0.00 41.65 2.15
456 687 5.685954 GCACATGAAGATGCATTTGTATGAG 59.314 40.000 16.18 11.43 41.65 2.90
457 688 6.679638 GCACATGAAGATGCATTTGTATGAGT 60.680 38.462 16.18 2.27 41.65 3.41
458 689 7.467675 GCACATGAAGATGCATTTGTATGAGTA 60.468 37.037 16.18 0.00 41.65 2.59
459 690 8.068380 CACATGAAGATGCATTTGTATGAGTAG 58.932 37.037 16.18 4.71 31.64 2.57
460 691 7.772292 ACATGAAGATGCATTTGTATGAGTAGT 59.228 33.333 16.18 0.00 31.64 2.73
461 692 8.618677 CATGAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
462 693 8.565896 TGAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
463 694 9.665719 TGAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
469 700 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
470 701 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
472 703 8.786826 TTTGTATGAGTAGTTTATCTTGTGGG 57.213 34.615 0.00 0.00 0.00 4.61
473 704 7.727578 TGTATGAGTAGTTTATCTTGTGGGA 57.272 36.000 0.00 0.00 0.00 4.37
474 705 7.782049 TGTATGAGTAGTTTATCTTGTGGGAG 58.218 38.462 0.00 0.00 0.00 4.30
475 706 7.618117 TGTATGAGTAGTTTATCTTGTGGGAGA 59.382 37.037 0.00 0.00 0.00 3.71
476 707 6.928348 TGAGTAGTTTATCTTGTGGGAGAA 57.072 37.500 0.00 0.00 0.00 2.87
477 708 7.311092 TGAGTAGTTTATCTTGTGGGAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
478 709 7.918076 TGAGTAGTTTATCTTGTGGGAGAAAT 58.082 34.615 0.00 0.00 30.80 2.17
479 710 7.824289 TGAGTAGTTTATCTTGTGGGAGAAATG 59.176 37.037 0.00 0.00 30.80 2.32
480 711 7.112779 AGTAGTTTATCTTGTGGGAGAAATGG 58.887 38.462 0.00 0.00 30.80 3.16
481 712 6.139679 AGTTTATCTTGTGGGAGAAATGGA 57.860 37.500 0.00 0.00 30.80 3.41
482 713 6.735556 AGTTTATCTTGTGGGAGAAATGGAT 58.264 36.000 0.00 0.00 30.80 3.41
483 714 6.604795 AGTTTATCTTGTGGGAGAAATGGATG 59.395 38.462 0.00 0.00 30.80 3.51
484 715 4.868172 ATCTTGTGGGAGAAATGGATGA 57.132 40.909 0.00 0.00 0.00 2.92
485 716 4.656100 TCTTGTGGGAGAAATGGATGAA 57.344 40.909 0.00 0.00 0.00 2.57
486 717 4.335416 TCTTGTGGGAGAAATGGATGAAC 58.665 43.478 0.00 0.00 0.00 3.18
487 718 2.710377 TGTGGGAGAAATGGATGAACG 58.290 47.619 0.00 0.00 0.00 3.95
488 719 2.304470 TGTGGGAGAAATGGATGAACGA 59.696 45.455 0.00 0.00 0.00 3.85
489 720 2.939103 GTGGGAGAAATGGATGAACGAG 59.061 50.000 0.00 0.00 0.00 4.18
490 721 2.092968 TGGGAGAAATGGATGAACGAGG 60.093 50.000 0.00 0.00 0.00 4.63
491 722 2.565841 GGAGAAATGGATGAACGAGGG 58.434 52.381 0.00 0.00 0.00 4.30
492 723 2.170607 GGAGAAATGGATGAACGAGGGA 59.829 50.000 0.00 0.00 0.00 4.20
493 724 3.370527 GGAGAAATGGATGAACGAGGGAA 60.371 47.826 0.00 0.00 0.00 3.97
494 725 3.873952 GAGAAATGGATGAACGAGGGAAG 59.126 47.826 0.00 0.00 0.00 3.46
495 726 2.717639 AATGGATGAACGAGGGAAGG 57.282 50.000 0.00 0.00 0.00 3.46
496 727 0.181350 ATGGATGAACGAGGGAAGGC 59.819 55.000 0.00 0.00 0.00 4.35
497 728 1.153147 GGATGAACGAGGGAAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
498 729 1.627297 GGATGAACGAGGGAAGGCCT 61.627 60.000 0.00 0.00 0.00 5.19
499 730 0.253327 GATGAACGAGGGAAGGCCTT 59.747 55.000 20.65 20.65 0.00 4.35
500 731 1.485066 GATGAACGAGGGAAGGCCTTA 59.515 52.381 20.54 0.00 0.00 2.69
501 732 1.580059 TGAACGAGGGAAGGCCTTAT 58.420 50.000 20.54 7.60 0.00 1.73
502 733 1.485066 TGAACGAGGGAAGGCCTTATC 59.515 52.381 20.54 15.67 0.00 1.75
503 734 1.763545 GAACGAGGGAAGGCCTTATCT 59.236 52.381 20.54 18.47 0.00 1.98
504 735 1.123928 ACGAGGGAAGGCCTTATCTG 58.876 55.000 20.54 14.43 0.00 2.90
505 736 0.250081 CGAGGGAAGGCCTTATCTGC 60.250 60.000 20.54 5.12 0.00 4.26
506 737 0.839946 GAGGGAAGGCCTTATCTGCA 59.160 55.000 20.54 0.00 0.00 4.41
507 738 1.212935 GAGGGAAGGCCTTATCTGCAA 59.787 52.381 20.54 0.00 0.00 4.08
508 739 1.640670 AGGGAAGGCCTTATCTGCAAA 59.359 47.619 20.54 0.00 0.00 3.68
509 740 2.245806 AGGGAAGGCCTTATCTGCAAAT 59.754 45.455 20.54 0.00 0.00 2.32
510 741 2.363359 GGGAAGGCCTTATCTGCAAATG 59.637 50.000 20.54 0.00 0.00 2.32
511 742 3.026694 GGAAGGCCTTATCTGCAAATGT 58.973 45.455 20.54 0.00 0.00 2.71
512 743 3.181483 GGAAGGCCTTATCTGCAAATGTG 60.181 47.826 20.54 0.00 0.00 3.21
513 744 2.381911 AGGCCTTATCTGCAAATGTGG 58.618 47.619 0.00 0.00 0.00 4.17
514 745 2.025037 AGGCCTTATCTGCAAATGTGGA 60.025 45.455 0.00 0.00 0.00 4.02
515 746 2.360165 GGCCTTATCTGCAAATGTGGAG 59.640 50.000 0.00 0.00 44.23 3.86
520 751 2.775911 TCTGCAAATGTGGAGAGGAG 57.224 50.000 2.39 0.00 46.25 3.69
521 752 1.980765 TCTGCAAATGTGGAGAGGAGT 59.019 47.619 2.39 0.00 46.25 3.85
522 753 2.082231 CTGCAAATGTGGAGAGGAGTG 58.918 52.381 0.00 0.00 45.65 3.51
523 754 0.807496 GCAAATGTGGAGAGGAGTGC 59.193 55.000 0.00 0.00 0.00 4.40
524 755 1.081892 CAAATGTGGAGAGGAGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
525 756 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
526 757 1.903877 AATGTGGAGAGGAGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
527 758 2.997897 GTGGAGAGGAGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
528 759 1.681327 GTGGAGAGGAGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
529 760 1.077805 TGGAGAGGAGTGCGGGTAA 59.922 57.895 0.00 0.00 0.00 2.85
530 761 0.543410 TGGAGAGGAGTGCGGGTAAA 60.543 55.000 0.00 0.00 0.00 2.01
531 762 0.831307 GGAGAGGAGTGCGGGTAAAT 59.169 55.000 0.00 0.00 0.00 1.40
532 763 1.209747 GGAGAGGAGTGCGGGTAAATT 59.790 52.381 0.00 0.00 0.00 1.82
533 764 2.280628 GAGAGGAGTGCGGGTAAATTG 58.719 52.381 0.00 0.00 0.00 2.32
534 765 1.628846 AGAGGAGTGCGGGTAAATTGT 59.371 47.619 0.00 0.00 0.00 2.71
535 766 2.007608 GAGGAGTGCGGGTAAATTGTC 58.992 52.381 0.00 0.00 0.00 3.18
536 767 1.349688 AGGAGTGCGGGTAAATTGTCA 59.650 47.619 0.00 0.00 0.00 3.58
537 768 2.026262 AGGAGTGCGGGTAAATTGTCAT 60.026 45.455 0.00 0.00 0.00 3.06
538 769 3.199071 AGGAGTGCGGGTAAATTGTCATA 59.801 43.478 0.00 0.00 0.00 2.15
539 770 3.560068 GGAGTGCGGGTAAATTGTCATAG 59.440 47.826 0.00 0.00 0.00 2.23
540 771 4.189231 GAGTGCGGGTAAATTGTCATAGT 58.811 43.478 0.00 0.00 0.00 2.12
541 772 4.585879 AGTGCGGGTAAATTGTCATAGTT 58.414 39.130 0.00 0.00 0.00 2.24
542 773 5.007682 AGTGCGGGTAAATTGTCATAGTTT 58.992 37.500 0.00 0.00 0.00 2.66
543 774 5.123344 AGTGCGGGTAAATTGTCATAGTTTC 59.877 40.000 0.00 0.00 0.00 2.78
544 775 4.396790 TGCGGGTAAATTGTCATAGTTTCC 59.603 41.667 0.00 0.00 0.00 3.13
545 776 4.638865 GCGGGTAAATTGTCATAGTTTCCT 59.361 41.667 0.00 0.00 0.00 3.36
546 777 5.124936 GCGGGTAAATTGTCATAGTTTCCTT 59.875 40.000 0.00 0.00 0.00 3.36
547 778 6.677187 GCGGGTAAATTGTCATAGTTTCCTTC 60.677 42.308 0.00 0.00 0.00 3.46
548 779 6.183360 CGGGTAAATTGTCATAGTTTCCTTCC 60.183 42.308 0.00 0.00 0.00 3.46
549 780 6.890268 GGGTAAATTGTCATAGTTTCCTTCCT 59.110 38.462 0.00 0.00 0.00 3.36
550 781 8.050930 GGGTAAATTGTCATAGTTTCCTTCCTA 58.949 37.037 0.00 0.00 0.00 2.94
551 782 9.628500 GGTAAATTGTCATAGTTTCCTTCCTAT 57.372 33.333 0.00 0.00 0.00 2.57
553 784 8.753497 AAATTGTCATAGTTTCCTTCCTATCC 57.247 34.615 0.00 0.00 0.00 2.59
554 785 5.531122 TGTCATAGTTTCCTTCCTATCCG 57.469 43.478 0.00 0.00 0.00 4.18
555 786 4.960469 TGTCATAGTTTCCTTCCTATCCGT 59.040 41.667 0.00 0.00 0.00 4.69
556 787 5.424252 TGTCATAGTTTCCTTCCTATCCGTT 59.576 40.000 0.00 0.00 0.00 4.44
557 788 6.608405 TGTCATAGTTTCCTTCCTATCCGTTA 59.392 38.462 0.00 0.00 0.00 3.18
558 789 7.146648 GTCATAGTTTCCTTCCTATCCGTTAG 58.853 42.308 0.00 0.00 0.00 2.34
559 790 7.014038 GTCATAGTTTCCTTCCTATCCGTTAGA 59.986 40.741 0.00 0.00 0.00 2.10
560 791 7.728981 TCATAGTTTCCTTCCTATCCGTTAGAT 59.271 37.037 0.00 0.00 39.15 1.98
561 792 9.021807 CATAGTTTCCTTCCTATCCGTTAGATA 57.978 37.037 0.00 0.00 36.33 1.98
562 793 9.771140 ATAGTTTCCTTCCTATCCGTTAGATAT 57.229 33.333 0.00 0.00 36.84 1.63
564 795 9.245481 AGTTTCCTTCCTATCCGTTAGATATAG 57.755 37.037 0.00 0.00 36.84 1.31
565 796 9.240734 GTTTCCTTCCTATCCGTTAGATATAGA 57.759 37.037 0.00 0.00 36.84 1.98
566 797 9.992442 TTTCCTTCCTATCCGTTAGATATAGAT 57.008 33.333 0.00 0.00 36.84 1.98
567 798 9.629878 TTCCTTCCTATCCGTTAGATATAGATC 57.370 37.037 0.00 0.00 36.84 2.75
568 799 7.932491 TCCTTCCTATCCGTTAGATATAGATCG 59.068 40.741 0.00 0.00 36.84 3.69
569 800 7.173562 CCTTCCTATCCGTTAGATATAGATCGG 59.826 44.444 0.00 0.00 36.84 4.18
574 805 4.634883 TCCGTTAGATATAGATCGGACAGC 59.365 45.833 0.00 0.00 41.45 4.40
575 806 4.201930 CCGTTAGATATAGATCGGACAGCC 60.202 50.000 0.00 0.00 40.29 4.85
576 807 4.636648 CGTTAGATATAGATCGGACAGCCT 59.363 45.833 6.85 0.00 37.15 4.58
577 808 5.816258 CGTTAGATATAGATCGGACAGCCTA 59.184 44.000 6.85 0.00 37.15 3.93
578 809 6.483974 CGTTAGATATAGATCGGACAGCCTAT 59.516 42.308 6.85 0.00 37.15 2.57
579 810 7.656542 CGTTAGATATAGATCGGACAGCCTATA 59.343 40.741 6.85 0.00 37.15 1.31
580 811 9.509956 GTTAGATATAGATCGGACAGCCTATAT 57.490 37.037 0.00 0.00 37.45 0.86
582 813 8.402798 AGATATAGATCGGACAGCCTATATTG 57.597 38.462 0.00 0.00 35.87 1.90
583 814 3.601443 AGATCGGACAGCCTATATTGC 57.399 47.619 0.00 0.00 0.00 3.56
584 815 2.899900 AGATCGGACAGCCTATATTGCA 59.100 45.455 0.00 0.00 0.00 4.08
585 816 2.820059 TCGGACAGCCTATATTGCAG 57.180 50.000 0.00 0.00 0.00 4.41
586 817 1.344438 TCGGACAGCCTATATTGCAGG 59.656 52.381 0.00 0.00 36.16 4.85
587 818 1.344438 CGGACAGCCTATATTGCAGGA 59.656 52.381 0.00 0.00 34.91 3.86
588 819 2.027745 CGGACAGCCTATATTGCAGGAT 60.028 50.000 0.00 0.00 34.91 3.24
591 822 2.089980 CAGCCTATATTGCAGGATGGC 58.910 52.381 10.48 10.48 44.21 4.40
592 823 1.706866 AGCCTATATTGCAGGATGGCA 59.293 47.619 17.58 0.00 43.19 4.92
593 824 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
594 825 2.290514 GCCTATATTGCAGGATGGCAGA 60.291 50.000 12.68 0.00 45.88 4.26
595 826 3.341823 CCTATATTGCAGGATGGCAGAC 58.658 50.000 0.00 0.00 45.88 3.51
596 827 3.244665 CCTATATTGCAGGATGGCAGACA 60.245 47.826 0.00 0.00 45.88 3.41
597 828 2.042686 TATTGCAGGATGGCAGACAC 57.957 50.000 0.00 0.00 45.88 3.67
598 829 0.038599 ATTGCAGGATGGCAGACACA 59.961 50.000 0.00 0.00 45.88 3.72
599 830 0.038599 TTGCAGGATGGCAGACACAT 59.961 50.000 0.00 0.00 45.88 3.21
600 831 0.393402 TGCAGGATGGCAGACACATC 60.393 55.000 0.00 0.00 43.04 3.06
601 832 0.393402 GCAGGATGGCAGACACATCA 60.393 55.000 7.60 0.00 45.01 3.07
602 833 1.749635 GCAGGATGGCAGACACATCAT 60.750 52.381 7.60 0.00 45.01 2.45
603 834 2.219458 CAGGATGGCAGACACATCATC 58.781 52.381 7.60 0.00 45.01 2.92
604 835 1.841919 AGGATGGCAGACACATCATCA 59.158 47.619 7.60 0.00 45.01 3.07
605 836 2.442126 AGGATGGCAGACACATCATCAT 59.558 45.455 7.60 0.00 45.01 2.45
606 837 2.812591 GGATGGCAGACACATCATCATC 59.187 50.000 7.60 0.00 45.01 2.92
607 838 3.473625 GATGGCAGACACATCATCATCA 58.526 45.455 0.00 0.00 43.21 3.07
608 839 2.635714 TGGCAGACACATCATCATCAC 58.364 47.619 0.00 0.00 0.00 3.06
609 840 1.945394 GGCAGACACATCATCATCACC 59.055 52.381 0.00 0.00 0.00 4.02
610 841 2.635714 GCAGACACATCATCATCACCA 58.364 47.619 0.00 0.00 0.00 4.17
611 842 3.011818 GCAGACACATCATCATCACCAA 58.988 45.455 0.00 0.00 0.00 3.67
612 843 3.181503 GCAGACACATCATCATCACCAAC 60.182 47.826 0.00 0.00 0.00 3.77
613 844 4.259356 CAGACACATCATCATCACCAACT 58.741 43.478 0.00 0.00 0.00 3.16
614 845 4.331992 CAGACACATCATCATCACCAACTC 59.668 45.833 0.00 0.00 0.00 3.01
615 846 4.224594 AGACACATCATCATCACCAACTCT 59.775 41.667 0.00 0.00 0.00 3.24
616 847 4.259356 ACACATCATCATCACCAACTCTG 58.741 43.478 0.00 0.00 0.00 3.35
617 848 3.064958 CACATCATCATCACCAACTCTGC 59.935 47.826 0.00 0.00 0.00 4.26
618 849 3.054582 ACATCATCATCACCAACTCTGCT 60.055 43.478 0.00 0.00 0.00 4.24
619 850 3.708403 TCATCATCACCAACTCTGCTT 57.292 42.857 0.00 0.00 0.00 3.91
620 851 4.025040 TCATCATCACCAACTCTGCTTT 57.975 40.909 0.00 0.00 0.00 3.51
621 852 4.401022 TCATCATCACCAACTCTGCTTTT 58.599 39.130 0.00 0.00 0.00 2.27
622 853 4.828939 TCATCATCACCAACTCTGCTTTTT 59.171 37.500 0.00 0.00 0.00 1.94
623 854 6.003326 TCATCATCACCAACTCTGCTTTTTA 58.997 36.000 0.00 0.00 0.00 1.52
624 855 6.660521 TCATCATCACCAACTCTGCTTTTTAT 59.339 34.615 0.00 0.00 0.00 1.40
625 856 7.828717 TCATCATCACCAACTCTGCTTTTTATA 59.171 33.333 0.00 0.00 0.00 0.98
626 857 7.994425 TCATCACCAACTCTGCTTTTTATAA 57.006 32.000 0.00 0.00 0.00 0.98
627 858 8.044060 TCATCACCAACTCTGCTTTTTATAAG 57.956 34.615 0.00 0.00 0.00 1.73
628 859 7.882791 TCATCACCAACTCTGCTTTTTATAAGA 59.117 33.333 0.00 0.00 0.00 2.10
629 860 7.672983 TCACCAACTCTGCTTTTTATAAGAG 57.327 36.000 0.00 0.00 41.59 2.85
631 862 8.372459 TCACCAACTCTGCTTTTTATAAGAGTA 58.628 33.333 4.72 0.00 46.64 2.59
632 863 8.660373 CACCAACTCTGCTTTTTATAAGAGTAG 58.340 37.037 4.72 6.39 46.64 2.57
633 864 8.594550 ACCAACTCTGCTTTTTATAAGAGTAGA 58.405 33.333 13.89 13.89 46.64 2.59
634 865 9.092876 CCAACTCTGCTTTTTATAAGAGTAGAG 57.907 37.037 26.36 26.36 46.64 2.43
635 866 9.862371 CAACTCTGCTTTTTATAAGAGTAGAGA 57.138 33.333 30.41 16.25 46.64 3.10
653 884 0.167251 GATACACGGTGGCCAAAACG 59.833 55.000 20.23 20.23 0.00 3.60
658 889 0.747852 ACGGTGGCCAAAACGAAAAT 59.252 45.000 26.35 6.73 0.00 1.82
703 934 2.277737 CCCACATGGCATCCAGCT 59.722 61.111 0.00 0.00 44.79 4.24
707 938 0.179026 CACATGGCATCCAGCTAGCT 60.179 55.000 12.68 12.68 44.79 3.32
741 978 2.728435 GCGGGTAGGATTGGACCGT 61.728 63.158 0.00 0.00 45.85 4.83
758 995 0.036306 CGTACCAGGCAGGAGGTTTT 59.964 55.000 1.67 0.00 41.22 2.43
766 1003 1.029681 GCAGGAGGTTTTGTTTCCGT 58.970 50.000 0.00 0.00 36.11 4.69
798 1043 3.731136 GCAGTTGCAGTTGGACGA 58.269 55.556 0.00 0.00 41.59 4.20
860 1106 0.176219 CGTCCCCGGCTACAAATACA 59.824 55.000 0.00 0.00 0.00 2.29
862 1121 0.542805 TCCCCGGCTACAAATACACC 59.457 55.000 0.00 0.00 0.00 4.16
868 1127 1.133884 GGCTACAAATACACCCCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
869 1128 1.562475 GCTACAAATACACCCCTCCCA 59.438 52.381 0.00 0.00 0.00 4.37
870 1129 2.174854 GCTACAAATACACCCCTCCCAT 59.825 50.000 0.00 0.00 0.00 4.00
871 1130 3.747708 GCTACAAATACACCCCTCCCATC 60.748 52.174 0.00 0.00 0.00 3.51
877 1136 4.124126 ACCCCTCCCATCTCCCCC 62.124 72.222 0.00 0.00 0.00 5.40
955 1227 1.062886 TCCCAGTTCATCGATCCTCCT 60.063 52.381 0.00 0.00 0.00 3.69
987 1260 0.987294 AGAAAGCCAGCTAGCCAGAA 59.013 50.000 12.13 0.00 0.00 3.02
989 1262 0.322906 AAAGCCAGCTAGCCAGAACC 60.323 55.000 12.13 0.00 0.00 3.62
997 1270 2.776536 AGCTAGCCAGAACCATCAATCT 59.223 45.455 12.13 0.00 0.00 2.40
1212 1485 4.814294 GACGAGGACGCCGCCATT 62.814 66.667 0.00 0.00 43.96 3.16
1497 1818 1.002502 GCTCGGCCAGGTTTACCTT 60.003 57.895 2.24 0.00 46.09 3.50
1570 1906 2.896443 GGCACGAGGAGAAGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
1571 1907 1.682684 GGCACGAGGAGAAGGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
1572 1908 1.258445 GGCACGAGGAGAAGGAGGAA 61.258 60.000 0.00 0.00 0.00 3.36
1587 1923 2.266055 GAACAGGAGGACCCGCTG 59.734 66.667 0.00 0.00 40.87 5.18
1611 1947 2.904866 CTCTCGCTCTCCCTCCCG 60.905 72.222 0.00 0.00 0.00 5.14
1672 2020 1.671054 CATTTCCACCAGCCGTCGT 60.671 57.895 0.00 0.00 0.00 4.34
1719 2088 2.043046 CCGGCATCCCACCCATTT 60.043 61.111 0.00 0.00 0.00 2.32
1822 2191 3.814615 CTGCCGTCCATGCCGCTAT 62.815 63.158 0.00 0.00 0.00 2.97
1915 2335 0.109551 CGATCCATCCGGTCGATCAG 60.110 60.000 20.40 12.99 37.76 2.90
1939 2363 3.200593 CAGCCGCCATCTGCTCAC 61.201 66.667 0.00 0.00 35.12 3.51
1944 2368 2.104859 CGCCATCTGCTCACTGGTG 61.105 63.158 0.00 0.00 38.05 4.17
1991 2430 5.809001 AGTCTGAACTGAATTAGCAATGGA 58.191 37.500 0.00 0.00 33.32 3.41
1996 2435 7.120285 TCTGAACTGAATTAGCAATGGAAGAAG 59.880 37.037 0.00 0.00 0.00 2.85
2004 2443 3.077359 AGCAATGGAAGAAGGAAGAACG 58.923 45.455 0.00 0.00 0.00 3.95
2131 2589 2.347292 CGTATTGCTGCGAATACCGAAC 60.347 50.000 19.62 6.84 41.76 3.95
2173 5309 6.823689 AGTACGTATGGATCTGAAGCAAAAAT 59.176 34.615 0.00 0.00 0.00 1.82
2176 5312 8.225603 ACGTATGGATCTGAAGCAAAAATAAT 57.774 30.769 0.00 0.00 0.00 1.28
2228 5374 2.543641 TGCAGAGTATCATCAAGCGTG 58.456 47.619 0.00 0.00 37.82 5.34
2229 5375 1.260033 GCAGAGTATCATCAAGCGTGC 59.740 52.381 0.00 0.00 37.82 5.34
2283 5446 6.084326 ACAATCAGACAAAATGGTAACCAC 57.916 37.500 0.00 0.00 35.80 4.16
2284 5447 5.833131 ACAATCAGACAAAATGGTAACCACT 59.167 36.000 0.00 0.00 35.80 4.00
2285 5448 7.001674 ACAATCAGACAAAATGGTAACCACTA 58.998 34.615 0.00 0.00 35.80 2.74
2286 5449 7.504238 ACAATCAGACAAAATGGTAACCACTAA 59.496 33.333 0.00 0.00 35.80 2.24
2287 5450 6.870971 TCAGACAAAATGGTAACCACTAAC 57.129 37.500 0.00 0.00 35.80 2.34
2288 5451 6.358178 TCAGACAAAATGGTAACCACTAACA 58.642 36.000 0.00 0.00 35.80 2.41
2289 5452 6.829298 TCAGACAAAATGGTAACCACTAACAA 59.171 34.615 0.00 0.00 35.80 2.83
2290 5453 7.339721 TCAGACAAAATGGTAACCACTAACAAA 59.660 33.333 0.00 0.00 35.80 2.83
2291 5454 8.141268 CAGACAAAATGGTAACCACTAACAAAT 58.859 33.333 0.00 0.00 35.80 2.32
2292 5455 9.357161 AGACAAAATGGTAACCACTAACAAATA 57.643 29.630 0.00 0.00 35.80 1.40
2293 5456 9.620660 GACAAAATGGTAACCACTAACAAATAG 57.379 33.333 0.00 0.00 35.80 1.73
2294 5457 9.138596 ACAAAATGGTAACCACTAACAAATAGT 57.861 29.630 0.00 0.00 45.95 2.12
2429 5601 2.990066 AACCTACCACTGATGCTAGC 57.010 50.000 8.10 8.10 0.00 3.42
2533 5708 3.503363 GCACATCAGGCTGCCGTC 61.503 66.667 13.96 0.55 0.00 4.79
2576 5756 7.575720 CGGCAAATCACTCTCCTTTTATTTCTT 60.576 37.037 0.00 0.00 0.00 2.52
2577 5757 8.090831 GGCAAATCACTCTCCTTTTATTTCTTT 58.909 33.333 0.00 0.00 0.00 2.52
2719 5903 4.039703 CCGTGATGCATTTGACATTGATC 58.960 43.478 0.00 0.00 0.00 2.92
2852 6054 9.019764 CATTACTAAATTTGCCAGATAAAACCG 57.980 33.333 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.585286 ACACGATGATTTTGAATTGGAATTG 57.415 32.000 0.00 0.00 0.00 2.32
1 2 8.606040 AAACACGATGATTTTGAATTGGAATT 57.394 26.923 0.00 0.00 0.00 2.17
81 82 2.402305 TGAAATTGCAATGTGTTCGGC 58.598 42.857 13.82 0.00 0.00 5.54
109 110 2.033049 CGGTAGGAGGACAACGTCTATG 59.967 54.545 0.00 0.00 32.47 2.23
221 240 7.666623 TGTAGTCACTGATGATTTGTAAGTGA 58.333 34.615 0.00 0.00 43.64 3.41
282 301 9.407380 TCTTACATCTATTGCATGGTTTGTAAT 57.593 29.630 10.55 0.00 42.44 1.89
283 302 8.673711 GTCTTACATCTATTGCATGGTTTGTAA 58.326 33.333 0.00 10.00 34.26 2.41
284 303 7.826744 TGTCTTACATCTATTGCATGGTTTGTA 59.173 33.333 0.00 0.00 0.00 2.41
285 304 6.658816 TGTCTTACATCTATTGCATGGTTTGT 59.341 34.615 0.00 0.00 0.00 2.83
286 305 7.087409 TGTCTTACATCTATTGCATGGTTTG 57.913 36.000 0.00 0.00 0.00 2.93
287 306 7.886629 ATGTCTTACATCTATTGCATGGTTT 57.113 32.000 0.00 0.00 32.38 3.27
337 356 3.668447 ACGACGATGGGATACTACGTAT 58.332 45.455 0.00 0.00 38.86 3.06
338 357 3.111853 ACGACGATGGGATACTACGTA 57.888 47.619 0.00 0.00 38.86 3.57
339 358 1.959042 ACGACGATGGGATACTACGT 58.041 50.000 0.00 0.00 40.54 3.57
340 359 3.344904 AAACGACGATGGGATACTACG 57.655 47.619 0.00 0.00 0.00 3.51
400 631 2.528743 CGCACGGGCATCTTGCTAG 61.529 63.158 11.77 0.00 44.28 3.42
401 632 2.511373 CGCACGGGCATCTTGCTA 60.511 61.111 11.77 0.00 44.28 3.49
402 633 4.704833 ACGCACGGGCATCTTGCT 62.705 61.111 11.77 0.00 44.28 3.91
403 634 3.737172 AACGCACGGGCATCTTGC 61.737 61.111 11.77 0.00 44.08 4.01
404 635 2.176546 CAACGCACGGGCATCTTG 59.823 61.111 11.77 3.62 41.24 3.02
405 636 3.737172 GCAACGCACGGGCATCTT 61.737 61.111 11.77 0.00 41.24 2.40
407 638 3.814268 ATGCAACGCACGGGCATC 61.814 61.111 11.77 0.00 44.41 3.91
411 642 2.413437 TTTTCCATGCAACGCACGGG 62.413 55.000 0.72 1.92 42.60 5.28
412 643 1.007964 TTTTCCATGCAACGCACGG 60.008 52.632 0.00 0.00 43.82 4.94
413 644 1.595982 CGTTTTCCATGCAACGCACG 61.596 55.000 9.28 0.00 43.04 5.34
414 645 2.132402 CGTTTTCCATGCAACGCAC 58.868 52.632 9.28 0.00 43.04 5.34
415 646 4.624293 CGTTTTCCATGCAACGCA 57.376 50.000 9.28 0.00 44.86 5.24
417 648 4.624293 TGCGTTTTCCATGCAACG 57.376 50.000 15.06 15.06 44.94 4.10
420 651 0.957362 TCATGTGCGTTTTCCATGCA 59.043 45.000 0.00 0.00 45.78 3.96
421 652 1.987770 CTTCATGTGCGTTTTCCATGC 59.012 47.619 0.00 0.00 36.70 4.06
422 653 3.557577 TCTTCATGTGCGTTTTCCATG 57.442 42.857 0.00 0.00 37.82 3.66
423 654 3.674138 GCATCTTCATGTGCGTTTTCCAT 60.674 43.478 0.00 0.00 31.86 3.41
424 655 2.351641 GCATCTTCATGTGCGTTTTCCA 60.352 45.455 0.00 0.00 31.86 3.53
425 656 2.253603 GCATCTTCATGTGCGTTTTCC 58.746 47.619 0.00 0.00 31.86 3.13
426 657 2.932498 TGCATCTTCATGTGCGTTTTC 58.068 42.857 2.06 0.00 44.11 2.29
427 658 3.581024 ATGCATCTTCATGTGCGTTTT 57.419 38.095 0.00 0.00 44.11 2.43
428 659 3.581024 AATGCATCTTCATGTGCGTTT 57.419 38.095 0.00 0.00 45.47 3.60
430 661 2.229543 ACAAATGCATCTTCATGTGCGT 59.770 40.909 0.00 0.00 44.11 5.24
431 662 2.871133 ACAAATGCATCTTCATGTGCG 58.129 42.857 0.00 0.00 44.11 5.34
432 663 5.584442 TCATACAAATGCATCTTCATGTGC 58.416 37.500 0.00 0.00 35.57 4.57
433 664 6.792326 ACTCATACAAATGCATCTTCATGTG 58.208 36.000 0.00 5.85 37.62 3.21
434 665 7.772292 ACTACTCATACAAATGCATCTTCATGT 59.228 33.333 0.00 3.63 32.76 3.21
435 666 8.151141 ACTACTCATACAAATGCATCTTCATG 57.849 34.615 0.00 2.39 32.76 3.07
436 667 8.743085 AACTACTCATACAAATGCATCTTCAT 57.257 30.769 0.00 0.00 32.76 2.57
437 668 8.565896 AAACTACTCATACAAATGCATCTTCA 57.434 30.769 0.00 0.00 32.76 3.02
443 674 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
444 675 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
446 677 9.396022 CCCACAAGATAAACTACTCATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
447 678 8.598916 TCCCACAAGATAAACTACTCATACAAA 58.401 33.333 0.00 0.00 0.00 2.83
448 679 8.141298 TCCCACAAGATAAACTACTCATACAA 57.859 34.615 0.00 0.00 0.00 2.41
449 680 7.618117 TCTCCCACAAGATAAACTACTCATACA 59.382 37.037 0.00 0.00 0.00 2.29
450 681 8.008513 TCTCCCACAAGATAAACTACTCATAC 57.991 38.462 0.00 0.00 0.00 2.39
451 682 8.603898 TTCTCCCACAAGATAAACTACTCATA 57.396 34.615 0.00 0.00 0.00 2.15
452 683 7.496346 TTCTCCCACAAGATAAACTACTCAT 57.504 36.000 0.00 0.00 0.00 2.90
453 684 6.928348 TTCTCCCACAAGATAAACTACTCA 57.072 37.500 0.00 0.00 0.00 3.41
454 685 7.281100 CCATTTCTCCCACAAGATAAACTACTC 59.719 40.741 0.00 0.00 0.00 2.59
455 686 7.037586 TCCATTTCTCCCACAAGATAAACTACT 60.038 37.037 0.00 0.00 0.00 2.57
456 687 7.110155 TCCATTTCTCCCACAAGATAAACTAC 58.890 38.462 0.00 0.00 0.00 2.73
457 688 7.265599 TCCATTTCTCCCACAAGATAAACTA 57.734 36.000 0.00 0.00 0.00 2.24
458 689 6.139679 TCCATTTCTCCCACAAGATAAACT 57.860 37.500 0.00 0.00 0.00 2.66
459 690 6.603201 TCATCCATTTCTCCCACAAGATAAAC 59.397 38.462 0.00 0.00 0.00 2.01
460 691 6.730447 TCATCCATTTCTCCCACAAGATAAA 58.270 36.000 0.00 0.00 0.00 1.40
461 692 6.325993 TCATCCATTTCTCCCACAAGATAA 57.674 37.500 0.00 0.00 0.00 1.75
462 693 5.974156 TCATCCATTTCTCCCACAAGATA 57.026 39.130 0.00 0.00 0.00 1.98
463 694 4.868172 TCATCCATTTCTCCCACAAGAT 57.132 40.909 0.00 0.00 0.00 2.40
464 695 4.335416 GTTCATCCATTTCTCCCACAAGA 58.665 43.478 0.00 0.00 0.00 3.02
465 696 3.127548 CGTTCATCCATTTCTCCCACAAG 59.872 47.826 0.00 0.00 0.00 3.16
466 697 3.081061 CGTTCATCCATTTCTCCCACAA 58.919 45.455 0.00 0.00 0.00 3.33
467 698 2.304470 TCGTTCATCCATTTCTCCCACA 59.696 45.455 0.00 0.00 0.00 4.17
468 699 2.939103 CTCGTTCATCCATTTCTCCCAC 59.061 50.000 0.00 0.00 0.00 4.61
469 700 2.092968 CCTCGTTCATCCATTTCTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
470 701 2.565841 CCTCGTTCATCCATTTCTCCC 58.434 52.381 0.00 0.00 0.00 4.30
471 702 2.170607 TCCCTCGTTCATCCATTTCTCC 59.829 50.000 0.00 0.00 0.00 3.71
472 703 3.543680 TCCCTCGTTCATCCATTTCTC 57.456 47.619 0.00 0.00 0.00 2.87
473 704 3.370953 CCTTCCCTCGTTCATCCATTTCT 60.371 47.826 0.00 0.00 0.00 2.52
474 705 2.945668 CCTTCCCTCGTTCATCCATTTC 59.054 50.000 0.00 0.00 0.00 2.17
475 706 2.945890 GCCTTCCCTCGTTCATCCATTT 60.946 50.000 0.00 0.00 0.00 2.32
476 707 1.408822 GCCTTCCCTCGTTCATCCATT 60.409 52.381 0.00 0.00 0.00 3.16
477 708 0.181350 GCCTTCCCTCGTTCATCCAT 59.819 55.000 0.00 0.00 0.00 3.41
478 709 1.602237 GCCTTCCCTCGTTCATCCA 59.398 57.895 0.00 0.00 0.00 3.41
479 710 1.153147 GGCCTTCCCTCGTTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
480 711 0.253327 AAGGCCTTCCCTCGTTCATC 59.747 55.000 13.78 0.00 45.62 2.92
481 712 1.580059 TAAGGCCTTCCCTCGTTCAT 58.420 50.000 24.49 0.00 45.62 2.57
482 713 1.485066 GATAAGGCCTTCCCTCGTTCA 59.515 52.381 24.49 0.18 45.62 3.18
483 714 1.763545 AGATAAGGCCTTCCCTCGTTC 59.236 52.381 24.49 8.68 45.62 3.95
484 715 1.486726 CAGATAAGGCCTTCCCTCGTT 59.513 52.381 24.49 0.00 45.62 3.85
485 716 1.123928 CAGATAAGGCCTTCCCTCGT 58.876 55.000 24.49 0.00 45.62 4.18
486 717 0.250081 GCAGATAAGGCCTTCCCTCG 60.250 60.000 24.49 14.56 45.62 4.63
487 718 0.839946 TGCAGATAAGGCCTTCCCTC 59.160 55.000 24.49 17.06 45.62 4.30
489 720 2.143876 TTTGCAGATAAGGCCTTCCC 57.856 50.000 24.49 15.04 0.00 3.97
490 721 3.026694 ACATTTGCAGATAAGGCCTTCC 58.973 45.455 24.49 15.44 0.00 3.46
491 722 3.181483 CCACATTTGCAGATAAGGCCTTC 60.181 47.826 24.49 9.18 0.00 3.46
492 723 2.762327 CCACATTTGCAGATAAGGCCTT 59.238 45.455 24.18 24.18 0.00 4.35
493 724 2.025037 TCCACATTTGCAGATAAGGCCT 60.025 45.455 0.00 0.00 0.00 5.19
494 725 2.360165 CTCCACATTTGCAGATAAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
495 726 3.282021 TCTCCACATTTGCAGATAAGGC 58.718 45.455 0.00 0.00 0.00 4.35
496 727 3.881688 CCTCTCCACATTTGCAGATAAGG 59.118 47.826 0.00 0.00 0.00 2.69
497 728 4.774124 TCCTCTCCACATTTGCAGATAAG 58.226 43.478 0.00 0.00 0.00 1.73
498 729 4.225942 ACTCCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
499 730 3.776969 ACTCCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
500 731 2.575279 ACTCCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
501 732 1.980765 ACTCCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
502 733 2.082231 CACTCCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
503 734 1.883638 GCACTCCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
504 735 0.807496 GCACTCCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
505 736 1.081892 CGCACTCCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
506 737 0.036010 CCGCACTCCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
507 738 1.599047 CCGCACTCCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
508 739 2.362369 CCCGCACTCCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
509 740 2.435120 TACCCGCACTCCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
510 741 1.255667 TTACCCGCACTCCTCTCCAC 61.256 60.000 0.00 0.00 0.00 4.02
511 742 0.543410 TTTACCCGCACTCCTCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
512 743 0.831307 ATTTACCCGCACTCCTCTCC 59.169 55.000 0.00 0.00 0.00 3.71
513 744 2.280628 CAATTTACCCGCACTCCTCTC 58.719 52.381 0.00 0.00 0.00 3.20
514 745 1.628846 ACAATTTACCCGCACTCCTCT 59.371 47.619 0.00 0.00 0.00 3.69
515 746 2.007608 GACAATTTACCCGCACTCCTC 58.992 52.381 0.00 0.00 0.00 3.71
516 747 1.349688 TGACAATTTACCCGCACTCCT 59.650 47.619 0.00 0.00 0.00 3.69
517 748 1.816074 TGACAATTTACCCGCACTCC 58.184 50.000 0.00 0.00 0.00 3.85
518 749 4.189231 ACTATGACAATTTACCCGCACTC 58.811 43.478 0.00 0.00 0.00 3.51
519 750 4.216411 ACTATGACAATTTACCCGCACT 57.784 40.909 0.00 0.00 0.00 4.40
520 751 4.957759 AACTATGACAATTTACCCGCAC 57.042 40.909 0.00 0.00 0.00 5.34
521 752 4.396790 GGAAACTATGACAATTTACCCGCA 59.603 41.667 0.00 0.00 0.00 5.69
522 753 4.638865 AGGAAACTATGACAATTTACCCGC 59.361 41.667 0.00 0.00 40.61 6.13
523 754 6.183360 GGAAGGAAACTATGACAATTTACCCG 60.183 42.308 0.00 0.00 42.68 5.28
524 755 6.890268 AGGAAGGAAACTATGACAATTTACCC 59.110 38.462 0.00 0.00 42.68 3.69
525 756 7.939784 AGGAAGGAAACTATGACAATTTACC 57.060 36.000 0.00 0.00 42.68 2.85
527 758 9.847224 GGATAGGAAGGAAACTATGACAATTTA 57.153 33.333 0.00 0.00 42.68 1.40
528 759 7.499232 CGGATAGGAAGGAAACTATGACAATTT 59.501 37.037 0.00 0.00 42.68 1.82
529 760 6.992715 CGGATAGGAAGGAAACTATGACAATT 59.007 38.462 0.00 0.00 42.68 2.32
530 761 6.099845 ACGGATAGGAAGGAAACTATGACAAT 59.900 38.462 0.00 0.00 42.68 2.71
531 762 5.424252 ACGGATAGGAAGGAAACTATGACAA 59.576 40.000 0.00 0.00 42.68 3.18
532 763 4.960469 ACGGATAGGAAGGAAACTATGACA 59.040 41.667 0.00 0.00 42.68 3.58
533 764 5.532664 ACGGATAGGAAGGAAACTATGAC 57.467 43.478 0.00 0.00 42.68 3.06
534 765 7.064866 TCTAACGGATAGGAAGGAAACTATGA 58.935 38.462 0.00 0.00 33.58 2.15
535 766 7.286215 TCTAACGGATAGGAAGGAAACTATG 57.714 40.000 0.00 0.00 33.58 2.23
536 767 9.771140 ATATCTAACGGATAGGAAGGAAACTAT 57.229 33.333 0.00 0.00 39.04 2.12
538 769 9.245481 CTATATCTAACGGATAGGAAGGAAACT 57.755 37.037 0.00 0.00 40.65 2.66
539 770 9.240734 TCTATATCTAACGGATAGGAAGGAAAC 57.759 37.037 0.00 0.00 39.89 2.78
540 771 9.992442 ATCTATATCTAACGGATAGGAAGGAAA 57.008 33.333 0.00 0.00 39.89 3.13
541 772 9.629878 GATCTATATCTAACGGATAGGAAGGAA 57.370 37.037 0.00 0.00 39.89 3.36
542 773 7.932491 CGATCTATATCTAACGGATAGGAAGGA 59.068 40.741 0.00 0.00 39.89 3.36
543 774 7.173562 CCGATCTATATCTAACGGATAGGAAGG 59.826 44.444 0.00 0.00 42.40 3.46
544 775 7.932491 TCCGATCTATATCTAACGGATAGGAAG 59.068 40.741 0.00 0.00 43.30 3.46
545 776 7.799081 TCCGATCTATATCTAACGGATAGGAA 58.201 38.462 0.00 0.00 43.30 3.36
546 777 7.370905 TCCGATCTATATCTAACGGATAGGA 57.629 40.000 0.00 0.00 43.30 2.94
547 778 7.171848 CTGTCCGATCTATATCTAACGGATAGG 59.828 44.444 19.69 0.00 46.83 2.57
551 782 4.634883 GCTGTCCGATCTATATCTAACGGA 59.365 45.833 0.00 0.00 45.36 4.69
552 783 4.201930 GGCTGTCCGATCTATATCTAACGG 60.202 50.000 0.00 0.00 41.39 4.44
553 784 4.636648 AGGCTGTCCGATCTATATCTAACG 59.363 45.833 0.00 0.00 37.47 3.18
554 785 7.811117 ATAGGCTGTCCGATCTATATCTAAC 57.189 40.000 0.00 0.00 37.47 2.34
556 787 9.508642 CAATATAGGCTGTCCGATCTATATCTA 57.491 37.037 0.00 0.00 35.53 1.98
557 788 7.040062 GCAATATAGGCTGTCCGATCTATATCT 60.040 40.741 0.00 0.00 35.53 1.98
558 789 7.087639 GCAATATAGGCTGTCCGATCTATATC 58.912 42.308 0.00 0.00 35.53 1.63
559 790 6.551227 TGCAATATAGGCTGTCCGATCTATAT 59.449 38.462 0.00 0.00 37.13 0.86
560 791 5.891551 TGCAATATAGGCTGTCCGATCTATA 59.108 40.000 0.00 0.00 37.47 1.31
561 792 4.711846 TGCAATATAGGCTGTCCGATCTAT 59.288 41.667 0.00 0.00 37.47 1.98
562 793 4.086457 TGCAATATAGGCTGTCCGATCTA 58.914 43.478 0.00 0.00 37.47 1.98
563 794 2.899900 TGCAATATAGGCTGTCCGATCT 59.100 45.455 0.00 0.00 37.47 2.75
564 795 3.257393 CTGCAATATAGGCTGTCCGATC 58.743 50.000 0.00 0.00 37.47 3.69
565 796 2.027745 CCTGCAATATAGGCTGTCCGAT 60.028 50.000 0.00 0.00 37.47 4.18
566 797 1.344438 CCTGCAATATAGGCTGTCCGA 59.656 52.381 0.00 0.00 37.47 4.55
567 798 1.344438 TCCTGCAATATAGGCTGTCCG 59.656 52.381 0.00 0.00 37.47 4.79
568 799 3.341823 CATCCTGCAATATAGGCTGTCC 58.658 50.000 0.00 0.00 35.23 4.02
569 800 3.341823 CCATCCTGCAATATAGGCTGTC 58.658 50.000 0.00 0.00 35.23 3.51
570 801 2.553904 GCCATCCTGCAATATAGGCTGT 60.554 50.000 0.00 0.00 37.67 4.40
571 802 2.089980 GCCATCCTGCAATATAGGCTG 58.910 52.381 0.00 0.00 37.67 4.85
572 803 1.706866 TGCCATCCTGCAATATAGGCT 59.293 47.619 15.13 0.00 41.12 4.58
573 804 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
574 805 3.244665 TGTCTGCCATCCTGCAATATAGG 60.245 47.826 0.00 0.00 41.51 2.57
575 806 3.750130 GTGTCTGCCATCCTGCAATATAG 59.250 47.826 0.00 0.00 41.51 1.31
576 807 3.136260 TGTGTCTGCCATCCTGCAATATA 59.864 43.478 0.00 0.00 41.51 0.86
577 808 2.092267 TGTGTCTGCCATCCTGCAATAT 60.092 45.455 0.00 0.00 41.51 1.28
578 809 1.281577 TGTGTCTGCCATCCTGCAATA 59.718 47.619 0.00 0.00 41.51 1.90
579 810 0.038599 TGTGTCTGCCATCCTGCAAT 59.961 50.000 0.00 0.00 41.51 3.56
580 811 0.038599 ATGTGTCTGCCATCCTGCAA 59.961 50.000 0.00 0.00 41.51 4.08
581 812 0.393402 GATGTGTCTGCCATCCTGCA 60.393 55.000 0.00 0.00 39.37 4.41
582 813 0.393402 TGATGTGTCTGCCATCCTGC 60.393 55.000 0.00 0.00 38.32 4.85
583 814 2.219458 GATGATGTGTCTGCCATCCTG 58.781 52.381 0.00 0.00 38.32 3.86
584 815 1.841919 TGATGATGTGTCTGCCATCCT 59.158 47.619 0.00 0.00 38.32 3.24
585 816 2.336945 TGATGATGTGTCTGCCATCC 57.663 50.000 0.00 0.00 38.32 3.51
586 817 3.250280 GTGATGATGATGTGTCTGCCATC 59.750 47.826 0.00 0.00 39.32 3.51
587 818 3.211865 GTGATGATGATGTGTCTGCCAT 58.788 45.455 0.00 0.00 0.00 4.40
588 819 2.635714 GTGATGATGATGTGTCTGCCA 58.364 47.619 0.00 0.00 0.00 4.92
589 820 1.945394 GGTGATGATGATGTGTCTGCC 59.055 52.381 0.00 0.00 0.00 4.85
590 821 2.635714 TGGTGATGATGATGTGTCTGC 58.364 47.619 0.00 0.00 0.00 4.26
591 822 4.259356 AGTTGGTGATGATGATGTGTCTG 58.741 43.478 0.00 0.00 0.00 3.51
592 823 4.224594 AGAGTTGGTGATGATGATGTGTCT 59.775 41.667 0.00 0.00 0.00 3.41
593 824 4.331992 CAGAGTTGGTGATGATGATGTGTC 59.668 45.833 0.00 0.00 0.00 3.67
594 825 4.259356 CAGAGTTGGTGATGATGATGTGT 58.741 43.478 0.00 0.00 0.00 3.72
595 826 3.064958 GCAGAGTTGGTGATGATGATGTG 59.935 47.826 0.00 0.00 0.00 3.21
596 827 3.054582 AGCAGAGTTGGTGATGATGATGT 60.055 43.478 0.00 0.00 32.86 3.06
597 828 3.542648 AGCAGAGTTGGTGATGATGATG 58.457 45.455 0.00 0.00 32.86 3.07
598 829 3.928005 AGCAGAGTTGGTGATGATGAT 57.072 42.857 0.00 0.00 32.86 2.45
599 830 3.708403 AAGCAGAGTTGGTGATGATGA 57.292 42.857 0.00 0.00 34.72 2.92
600 831 4.778534 AAAAGCAGAGTTGGTGATGATG 57.221 40.909 0.00 0.00 34.72 3.07
601 832 8.579850 TTATAAAAAGCAGAGTTGGTGATGAT 57.420 30.769 0.00 0.00 34.72 2.45
602 833 7.882791 TCTTATAAAAAGCAGAGTTGGTGATGA 59.117 33.333 0.00 0.00 34.72 2.92
603 834 8.044060 TCTTATAAAAAGCAGAGTTGGTGATG 57.956 34.615 0.00 0.00 34.72 3.07
604 835 7.885399 ACTCTTATAAAAAGCAGAGTTGGTGAT 59.115 33.333 0.00 0.00 42.79 3.06
605 836 7.224297 ACTCTTATAAAAAGCAGAGTTGGTGA 58.776 34.615 0.00 0.00 42.79 4.02
606 837 7.440523 ACTCTTATAAAAAGCAGAGTTGGTG 57.559 36.000 0.00 0.00 42.79 4.17
607 838 8.594550 TCTACTCTTATAAAAAGCAGAGTTGGT 58.405 33.333 7.61 0.00 42.79 3.67
608 839 9.092876 CTCTACTCTTATAAAAAGCAGAGTTGG 57.907 37.037 7.61 3.42 42.79 3.77
609 840 9.862371 TCTCTACTCTTATAAAAAGCAGAGTTG 57.138 33.333 16.88 11.79 42.79 3.16
615 846 9.731819 CGTGTATCTCTACTCTTATAAAAAGCA 57.268 33.333 0.00 0.00 0.00 3.91
616 847 9.182933 CCGTGTATCTCTACTCTTATAAAAAGC 57.817 37.037 0.00 0.00 0.00 3.51
619 850 8.627403 CCACCGTGTATCTCTACTCTTATAAAA 58.373 37.037 0.00 0.00 0.00 1.52
620 851 7.255381 GCCACCGTGTATCTCTACTCTTATAAA 60.255 40.741 0.00 0.00 0.00 1.40
621 852 6.206243 GCCACCGTGTATCTCTACTCTTATAA 59.794 42.308 0.00 0.00 0.00 0.98
622 853 5.704515 GCCACCGTGTATCTCTACTCTTATA 59.295 44.000 0.00 0.00 0.00 0.98
623 854 4.519730 GCCACCGTGTATCTCTACTCTTAT 59.480 45.833 0.00 0.00 0.00 1.73
624 855 3.881688 GCCACCGTGTATCTCTACTCTTA 59.118 47.826 0.00 0.00 0.00 2.10
625 856 2.688958 GCCACCGTGTATCTCTACTCTT 59.311 50.000 0.00 0.00 0.00 2.85
626 857 2.299521 GCCACCGTGTATCTCTACTCT 58.700 52.381 0.00 0.00 0.00 3.24
627 858 1.337387 GGCCACCGTGTATCTCTACTC 59.663 57.143 0.00 0.00 0.00 2.59
628 859 1.341679 TGGCCACCGTGTATCTCTACT 60.342 52.381 0.00 0.00 0.00 2.57
629 860 1.108776 TGGCCACCGTGTATCTCTAC 58.891 55.000 0.00 0.00 0.00 2.59
630 861 1.855295 TTGGCCACCGTGTATCTCTA 58.145 50.000 3.88 0.00 0.00 2.43
631 862 0.981183 TTTGGCCACCGTGTATCTCT 59.019 50.000 3.88 0.00 0.00 3.10
632 863 1.467342 GTTTTGGCCACCGTGTATCTC 59.533 52.381 3.88 0.00 0.00 2.75
633 864 1.530323 GTTTTGGCCACCGTGTATCT 58.470 50.000 3.88 0.00 0.00 1.98
634 865 0.167251 CGTTTTGGCCACCGTGTATC 59.833 55.000 3.88 0.00 0.00 2.24
635 866 0.250381 TCGTTTTGGCCACCGTGTAT 60.250 50.000 3.88 0.00 0.00 2.29
636 867 0.463295 TTCGTTTTGGCCACCGTGTA 60.463 50.000 3.88 0.00 0.00 2.90
637 868 1.313812 TTTCGTTTTGGCCACCGTGT 61.314 50.000 3.88 0.00 0.00 4.49
653 884 2.493675 GAGGGCCCACTTCTTGATTTTC 59.506 50.000 27.56 3.42 0.00 2.29
658 889 1.151810 AGGAGGGCCCACTTCTTGA 60.152 57.895 27.56 0.00 37.41 3.02
703 934 1.073177 GGCGCTTGTCGTTTTAGCTA 58.927 50.000 7.64 0.00 41.07 3.32
707 938 2.552268 GCGGCGCTTGTCGTTTTA 59.448 55.556 26.86 0.00 44.16 1.52
741 978 1.145571 ACAAAACCTCCTGCCTGGTA 58.854 50.000 0.00 0.00 35.17 3.25
766 1003 1.206325 CTGCATGCAACGTACGCAA 59.794 52.632 22.88 0.00 43.84 4.85
860 1106 4.124126 GGGGGAGATGGGAGGGGT 62.124 72.222 0.00 0.00 0.00 4.95
878 1142 4.619227 AGCGGTGGTGGTTGTCGG 62.619 66.667 0.00 0.00 0.00 4.79
880 1144 3.041940 CGAGCGGTGGTGGTTGTC 61.042 66.667 0.00 0.00 0.00 3.18
903 1167 2.203773 ATGGGTTGGGTTGTGGGC 60.204 61.111 0.00 0.00 0.00 5.36
915 1179 1.971149 TGGGAGAGTGATTGATGGGT 58.029 50.000 0.00 0.00 0.00 4.51
916 1180 2.224719 GGATGGGAGAGTGATTGATGGG 60.225 54.545 0.00 0.00 0.00 4.00
917 1181 2.224719 GGGATGGGAGAGTGATTGATGG 60.225 54.545 0.00 0.00 0.00 3.51
918 1182 2.440627 TGGGATGGGAGAGTGATTGATG 59.559 50.000 0.00 0.00 0.00 3.07
955 1227 1.469251 GGCTTTCTGATGCTACGACGA 60.469 52.381 0.00 0.00 0.00 4.20
989 1262 1.269988 ACCGCTCCATCGAGATTGATG 60.270 52.381 3.42 3.42 44.29 3.07
997 1270 4.492160 GTCGCACCGCTCCATCGA 62.492 66.667 0.00 0.00 0.00 3.59
1152 1425 4.077184 CCGGGCGACAGCTGGTTA 62.077 66.667 19.93 0.00 44.37 2.85
1342 1615 2.125326 CACCCTCGGCGACTCCATA 61.125 63.158 4.99 0.00 34.01 2.74
1344 1617 4.671590 TCACCCTCGGCGACTCCA 62.672 66.667 4.99 0.00 34.01 3.86
1564 1885 0.547954 GGGTCCTCCTGTTCCTCCTT 60.548 60.000 0.00 0.00 0.00 3.36
1570 1906 2.266055 CAGCGGGTCCTCCTGTTC 59.734 66.667 0.00 0.00 41.89 3.18
1571 1907 2.203788 TCAGCGGGTCCTCCTGTT 60.204 61.111 8.52 0.00 41.89 3.16
1572 1908 2.997897 GTCAGCGGGTCCTCCTGT 60.998 66.667 8.52 0.00 41.89 4.00
1707 2058 1.938327 GGGGCTAAATGGGTGGGAT 59.062 57.895 0.00 0.00 0.00 3.85
1711 2080 0.034477 AACTCGGGGCTAAATGGGTG 60.034 55.000 0.00 0.00 0.00 4.61
1736 2105 1.270199 GGATCATCTCGTGCATCAGCT 60.270 52.381 0.00 0.00 42.74 4.24
1746 2115 1.576920 CTCGTCCCGGATCATCTCG 59.423 63.158 0.73 0.00 0.00 4.04
1820 2189 0.461163 CATGACGCCGTCCACCAATA 60.461 55.000 15.60 0.00 0.00 1.90
1822 2191 2.358125 CATGACGCCGTCCACCAA 60.358 61.111 15.60 0.00 0.00 3.67
1867 2236 1.875813 GTCACTGCATCCTCGCGAG 60.876 63.158 29.06 29.06 33.35 5.03
1915 2335 0.811616 CAGATGGCGGCTGTCCTAAC 60.812 60.000 11.43 0.00 0.00 2.34
1939 2363 3.120199 CCTAACGAATGAAGCAACACCAG 60.120 47.826 0.00 0.00 0.00 4.00
1944 2368 4.870426 TCAGATCCTAACGAATGAAGCAAC 59.130 41.667 0.00 0.00 0.00 4.17
1991 2430 1.971357 TCTGCCTCGTTCTTCCTTCTT 59.029 47.619 0.00 0.00 0.00 2.52
1996 2435 1.448717 GGCTCTGCCTCGTTCTTCC 60.449 63.158 0.73 0.00 46.69 3.46
2004 2443 4.119583 TAGCTTAGCTTGGCTCTGCCTC 62.120 54.545 13.44 0.00 44.18 4.70
2030 2470 3.727723 CAGAAAGAAAGAAGCAAAGCGTG 59.272 43.478 0.00 0.00 0.00 5.34
2116 2574 1.348594 GCTGTTCGGTATTCGCAGC 59.651 57.895 0.00 0.00 43.62 5.25
2131 2589 4.451096 ACGTACTGGTAGATTTGTTTGCTG 59.549 41.667 0.00 0.00 0.00 4.41
2173 5309 8.279800 CGTCAGATGCAAAACGGATTATTATTA 58.720 33.333 0.00 0.00 0.00 0.98
2176 5312 5.503357 GCGTCAGATGCAAAACGGATTATTA 60.503 40.000 9.95 0.00 35.74 0.98
2179 5315 2.095213 GCGTCAGATGCAAAACGGATTA 59.905 45.455 9.95 0.00 35.74 1.75
2181 5317 0.447801 GCGTCAGATGCAAAACGGAT 59.552 50.000 9.95 0.00 35.74 4.18
2182 5318 0.882484 TGCGTCAGATGCAAAACGGA 60.882 50.000 15.31 8.92 37.15 4.69
2228 5374 3.397482 CATCCTAGAGCACATAGGTTGC 58.603 50.000 8.29 0.00 40.67 4.17
2229 5375 3.643320 TCCATCCTAGAGCACATAGGTTG 59.357 47.826 8.29 9.60 40.67 3.77
2288 5451 8.773645 GCCTTTTGCTGAAAATTTGTACTATTT 58.226 29.630 0.00 0.00 36.87 1.40
2289 5452 7.116233 CGCCTTTTGCTGAAAATTTGTACTATT 59.884 33.333 0.00 0.00 38.05 1.73
2290 5453 6.586082 CGCCTTTTGCTGAAAATTTGTACTAT 59.414 34.615 0.00 0.00 38.05 2.12
2291 5454 5.918011 CGCCTTTTGCTGAAAATTTGTACTA 59.082 36.000 0.00 0.00 38.05 1.82
2292 5455 4.744631 CGCCTTTTGCTGAAAATTTGTACT 59.255 37.500 0.00 0.00 38.05 2.73
2293 5456 4.608222 GCGCCTTTTGCTGAAAATTTGTAC 60.608 41.667 0.00 0.00 38.05 2.90
2294 5457 3.492756 GCGCCTTTTGCTGAAAATTTGTA 59.507 39.130 0.00 0.00 38.05 2.41
2429 5601 3.434637 GTTGCAATGCACGGGTAATTAG 58.565 45.455 7.72 0.00 38.71 1.73
2699 5883 4.098960 AGGGATCAATGTCAAATGCATCAC 59.901 41.667 0.00 0.00 0.00 3.06
2762 5952 7.013274 CACTCTTTAAAGACCAAATCTGTGGAA 59.987 37.037 13.99 0.00 41.65 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.