Multiple sequence alignment - TraesCS7D01G514900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G514900 chr7D 100.000 4465 0 0 1 4465 615596931 615601395 0.000000e+00 8246.0
1 TraesCS7D01G514900 chr7D 90.741 54 3 2 4412 4465 14985986 14986037 2.230000e-08 71.3
2 TraesCS7D01G514900 chr7B 93.594 2248 89 24 1942 4151 708417622 708415392 0.000000e+00 3302.0
3 TraesCS7D01G514900 chr7B 91.018 1759 85 35 184 1895 708419353 708417621 0.000000e+00 2305.0
4 TraesCS7D01G514900 chr7B 86.452 155 18 3 6 159 708421252 708421100 2.760000e-37 167.0
5 TraesCS7D01G514900 chr7B 89.091 55 4 2 4409 4462 734395864 734395917 2.880000e-07 67.6
6 TraesCS7D01G514900 chr7B 100.000 30 0 0 156 185 708421084 708421055 6.240000e-04 56.5
7 TraesCS7D01G514900 chr7A 91.281 1881 97 23 796 2644 708232028 708230183 0.000000e+00 2503.0
8 TraesCS7D01G514900 chr7A 92.668 1282 58 16 2661 3909 708230194 708228916 0.000000e+00 1814.0
9 TraesCS7D01G514900 chr7A 86.986 584 54 10 159 728 708284526 708283951 4.870000e-179 638.0
10 TraesCS7D01G514900 chr7A 88.768 276 29 2 4153 4426 217550623 217550898 1.990000e-88 337.0
11 TraesCS7D01G514900 chr7A 88.462 156 16 2 4 159 708284715 708284562 2.120000e-43 187.0
12 TraesCS7D01G514900 chr7A 92.157 51 4 0 4414 4464 672536679 672536729 6.200000e-09 73.1
13 TraesCS7D01G514900 chr3B 81.804 643 78 19 2024 2642 684256166 684256793 1.850000e-138 503.0
14 TraesCS7D01G514900 chr3B 80.769 338 40 15 1635 1955 684255806 684256135 1.600000e-59 241.0
15 TraesCS7D01G514900 chr3B 86.885 183 22 2 4167 4347 799617720 799617902 2.110000e-48 204.0
16 TraesCS7D01G514900 chr3B 78.613 173 20 10 3605 3765 684258561 684258728 1.020000e-16 99.0
17 TraesCS7D01G514900 chr3A 81.636 599 79 16 2059 2642 654590006 654590588 6.760000e-128 468.0
18 TraesCS7D01G514900 chr3A 79.310 406 46 17 1577 1952 654589553 654589950 2.670000e-62 250.0
19 TraesCS7D01G514900 chr3A 74.632 272 36 15 3625 3871 654592266 654592529 6.150000e-14 89.8
20 TraesCS7D01G514900 chr3A 94.000 50 3 0 4416 4465 244955029 244954980 4.790000e-10 76.8
21 TraesCS7D01G514900 chr3A 90.000 60 4 2 4404 4461 579880896 579880955 4.790000e-10 76.8
22 TraesCS7D01G514900 chr3D 82.609 552 61 20 2110 2643 519668789 519669323 5.260000e-124 455.0
23 TraesCS7D01G514900 chr3D 78.660 403 48 19 1581 1953 519668229 519668623 2.690000e-57 233.0
24 TraesCS7D01G514900 chr3D 75.490 306 41 17 3605 3885 519671842 519672138 7.850000e-23 119.0
25 TraesCS7D01G514900 chr3D 86.747 83 8 3 2805 2887 519669426 519669505 6.150000e-14 89.8
26 TraesCS7D01G514900 chr3D 100.000 41 0 0 4425 4465 38271410 38271370 4.790000e-10 76.8
27 TraesCS7D01G514900 chr4B 87.050 278 34 2 4152 4427 17259474 17259197 3.350000e-81 313.0
28 TraesCS7D01G514900 chr4B 79.110 292 34 11 4151 4424 68623252 68623534 4.590000e-40 176.0
29 TraesCS7D01G514900 chr4A 90.674 193 17 1 4235 4426 594161263 594161455 5.730000e-64 255.0
30 TraesCS7D01G514900 chr4A 92.453 53 2 2 4414 4465 733822879 733822930 1.720000e-09 75.0
31 TraesCS7D01G514900 chr5A 81.443 291 34 7 4155 4426 319768583 319768872 2.090000e-53 220.0
32 TraesCS7D01G514900 chr4D 88.462 182 20 1 4244 4424 46659193 46659374 7.520000e-53 219.0
33 TraesCS7D01G514900 chr4D 78.302 212 27 9 4155 4364 9253729 9253535 7.850000e-23 119.0
34 TraesCS7D01G514900 chr6D 79.715 281 27 14 4167 4426 418687865 418687594 4.590000e-40 176.0
35 TraesCS7D01G514900 chr2B 79.443 287 28 13 4153 4427 657492144 657492411 1.650000e-39 174.0
36 TraesCS7D01G514900 chr2D 90.741 54 4 1 4412 4465 91246618 91246566 2.230000e-08 71.3
37 TraesCS7D01G514900 chr6B 92.000 50 2 2 4416 4464 40385234 40385186 8.010000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G514900 chr7D 615596931 615601395 4464 False 8246.000000 8246 100.000000 1 4465 1 chr7D.!!$F2 4464
1 TraesCS7D01G514900 chr7B 708415392 708421252 5860 True 1457.625000 3302 92.766000 6 4151 4 chr7B.!!$R1 4145
2 TraesCS7D01G514900 chr7A 708228916 708232028 3112 True 2158.500000 2503 91.974500 796 3909 2 chr7A.!!$R1 3113
3 TraesCS7D01G514900 chr7A 708283951 708284715 764 True 412.500000 638 87.724000 4 728 2 chr7A.!!$R2 724
4 TraesCS7D01G514900 chr3B 684255806 684258728 2922 False 281.000000 503 80.395333 1635 3765 3 chr3B.!!$F2 2130
5 TraesCS7D01G514900 chr3A 654589553 654592529 2976 False 269.266667 468 78.526000 1577 3871 3 chr3A.!!$F2 2294
6 TraesCS7D01G514900 chr3D 519668229 519672138 3909 False 224.200000 455 80.876500 1581 3885 4 chr3D.!!$F1 2304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 2332 0.037605 CGCTTTCGTGGACTTAGGGT 60.038 55.0 0.0 0.0 0.00 4.34 F
733 2486 0.106769 TGCCAGAGGAACAGCAACAA 60.107 50.0 0.0 0.0 30.97 2.83 F
1021 2796 0.259938 GGATCATTGGGTGCCTCCTT 59.740 55.0 0.0 0.0 36.25 3.36 F
2651 4547 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 3786 0.108615 AGCCACTACGCACATCTCAC 60.109 55.0 0.0 0.0 0.00 3.51 R
2264 4139 0.251297 TACCTGGCTTTGCACTGCAT 60.251 50.0 4.1 0.0 38.76 3.96 R
2656 4552 1.217001 ATAGCACACACACACACACG 58.783 50.0 0.0 0.0 0.00 4.49 R
4274 8506 0.108233 CCCGAATTACCCGAACCGAA 60.108 55.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.453015 ACGCAACCAACCTGCTCAA 60.453 52.632 0.00 0.00 37.67 3.02
53 54 1.506493 CTGCTCAAGTGGTGTGAGTC 58.494 55.000 3.58 0.00 43.71 3.36
97 98 9.403110 CCTTATTGTGATTTTCTTGTTCTTCAG 57.597 33.333 0.00 0.00 0.00 3.02
215 1955 5.932303 ACTTCGAAGAAAGCACTAAAGCATA 59.068 36.000 31.08 0.00 45.90 3.14
253 1993 8.379457 ACAGTAAAGAAAGTACAGATTGTTCC 57.621 34.615 0.00 0.00 0.00 3.62
287 2027 2.032634 GCAATCGCGGGTGTTCTCA 61.033 57.895 6.13 0.00 0.00 3.27
296 2036 3.372060 GCGGGTGTTCTCAAAAGAAAAG 58.628 45.455 0.00 0.00 43.04 2.27
349 2089 2.605338 CGCATTCAAACCACAGGAACAG 60.605 50.000 0.00 0.00 0.00 3.16
415 2166 0.386352 TAACACCGAGAAGTCGCACG 60.386 55.000 0.00 0.00 45.41 5.34
558 2309 0.179108 GGAGGAGCACCATCACGTAC 60.179 60.000 2.07 0.00 38.94 3.67
569 2320 1.076533 ATCACGTACCTGCGCTTTCG 61.077 55.000 9.73 9.08 39.07 3.46
570 2321 2.019951 CACGTACCTGCGCTTTCGT 61.020 57.895 9.73 9.74 38.14 3.85
576 2327 1.961277 CCTGCGCTTTCGTGGACTT 60.961 57.895 9.73 0.00 38.14 3.01
581 2332 0.037605 CGCTTTCGTGGACTTAGGGT 60.038 55.000 0.00 0.00 0.00 4.34
654 2405 3.486252 GATTCCGGACTCCTCGGCG 62.486 68.421 1.83 0.00 46.43 6.46
672 2423 4.771356 CGTCGTCGCCGTCACCAT 62.771 66.667 0.00 0.00 35.01 3.55
694 2447 2.826738 AACAGCAACAACCGGCGT 60.827 55.556 6.01 0.00 34.54 5.68
730 2483 4.806936 CTGCCAGAGGAACAGCAA 57.193 55.556 0.00 0.00 34.26 3.91
732 2485 0.535780 CTGCCAGAGGAACAGCAACA 60.536 55.000 0.00 0.00 34.26 3.33
733 2486 0.106769 TGCCAGAGGAACAGCAACAA 60.107 50.000 0.00 0.00 30.97 2.83
735 2488 0.954452 CCAGAGGAACAGCAACAACC 59.046 55.000 0.00 0.00 0.00 3.77
736 2489 0.588252 CAGAGGAACAGCAACAACCG 59.412 55.000 0.00 0.00 0.00 4.44
738 2491 2.130073 GAGGAACAGCAACAACCGGC 62.130 60.000 0.00 0.00 0.00 6.13
739 2492 2.193536 GGAACAGCAACAACCGGCT 61.194 57.895 0.00 0.00 42.06 5.52
740 2493 0.887387 GGAACAGCAACAACCGGCTA 60.887 55.000 0.00 0.00 38.56 3.93
741 2494 1.165270 GAACAGCAACAACCGGCTAT 58.835 50.000 0.00 0.00 38.56 2.97
852 2622 1.202486 TCCCACTCGATTTATGTCGGC 60.202 52.381 0.00 0.00 41.74 5.54
870 2640 2.764967 TCATCCCCCGTAACCCCG 60.765 66.667 0.00 0.00 0.00 5.73
1016 2791 1.684983 CTTGATGGATCATTGGGTGCC 59.315 52.381 0.00 0.00 36.56 5.01
1017 2792 0.928505 TGATGGATCATTGGGTGCCT 59.071 50.000 0.00 0.00 0.00 4.75
1018 2793 1.133699 TGATGGATCATTGGGTGCCTC 60.134 52.381 0.00 0.00 0.00 4.70
1021 2796 0.259938 GGATCATTGGGTGCCTCCTT 59.740 55.000 0.00 0.00 36.25 3.36
1217 2994 1.734465 CTTCTGTTCTCGGTCAATGCC 59.266 52.381 0.00 0.00 0.00 4.40
1224 3002 3.818787 CGGTCAATGCCTGCTGCC 61.819 66.667 0.00 0.00 40.16 4.85
1240 3018 3.727258 CCCCCGTGGCTCCAATCA 61.727 66.667 0.00 0.00 0.00 2.57
1360 3139 1.523758 GGTAGTTGTTGGCACTCTGG 58.476 55.000 0.00 0.00 0.00 3.86
1361 3140 1.523758 GTAGTTGTTGGCACTCTGGG 58.476 55.000 0.00 0.00 0.00 4.45
1382 3161 2.033550 GGTTTACGTTGTGGTGCATTCA 59.966 45.455 0.00 0.00 0.00 2.57
1473 3255 5.051374 GTCACGAGACATGCTAATTAAGCTC 60.051 44.000 8.20 0.00 46.81 4.09
1499 3290 6.128007 ACCTTCCGCTTTCATTGTTAATGTAG 60.128 38.462 1.92 2.96 39.87 2.74
1501 3292 7.201732 CCTTCCGCTTTCATTGTTAATGTAGAT 60.202 37.037 1.92 0.00 39.87 1.98
1516 3307 9.485591 GTTAATGTAGATGTTTTATGTGGTTCG 57.514 33.333 0.00 0.00 0.00 3.95
1901 3721 5.122869 CCTCTTCTTTCATGCATCGAGAAAA 59.877 40.000 10.75 2.04 31.59 2.29
1929 3749 4.164221 ACGATCATTTTCATGGACCTACCT 59.836 41.667 0.00 0.00 39.86 3.08
1966 3786 1.542030 AGGATGCGATAGGTCTAAGCG 59.458 52.381 0.00 0.00 0.00 4.68
2008 3828 6.976925 GCTGATTTATTTTGGAGGTCATTCAG 59.023 38.462 0.00 0.00 0.00 3.02
2107 3974 5.011431 TGTTTGTTTTCATACCATGCCATCA 59.989 36.000 0.00 0.00 32.23 3.07
2132 4001 5.240623 TCATTTTTGTGTGAATAGGCGAAGT 59.759 36.000 0.00 0.00 0.00 3.01
2135 4004 4.530710 TTGTGTGAATAGGCGAAGTAGT 57.469 40.909 0.00 0.00 0.00 2.73
2238 4113 3.003275 TCTTCAGTGGACGAATTGTTTGC 59.997 43.478 0.00 0.00 0.00 3.68
2243 4118 2.159627 GTGGACGAATTGTTTGCGAGAT 59.840 45.455 0.00 0.00 0.00 2.75
2460 4347 6.756542 GCTTTCAAACCTTACAATTCAACTGT 59.243 34.615 0.00 0.00 0.00 3.55
2484 4371 7.541091 TGTTGTAGTCGATTCTTAGCACTAAAG 59.459 37.037 0.00 0.00 0.00 1.85
2648 4544 2.093181 AGGTATGTGTGTGTGTGTGTGT 60.093 45.455 0.00 0.00 0.00 3.72
2649 4545 2.031560 GGTATGTGTGTGTGTGTGTGTG 59.968 50.000 0.00 0.00 0.00 3.82
2650 4546 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2651 4547 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2652 4548 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2653 4549 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2654 4550 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2655 4551 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2656 4552 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2657 4553 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2658 4554 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
2659 4555 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
2660 4556 1.669437 TGTGTGTGTGTGTGCGTGT 60.669 52.632 0.00 0.00 0.00 4.49
2661 4557 1.225991 GTGTGTGTGTGTGCGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2662 4558 1.669437 TGTGTGTGTGTGCGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2663 4559 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2664 4560 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
3054 5001 1.207089 CCACGCTAGGTCTGATCCAAA 59.793 52.381 0.00 0.00 0.00 3.28
3190 5137 4.626081 AGGTTCAGCGCCGCAACT 62.626 61.111 13.36 0.00 0.00 3.16
3330 5303 2.764572 ACTAACCAGGATTTCGGATCGT 59.235 45.455 0.00 0.00 0.00 3.73
3346 5319 2.254546 TCGTGCCAATTTGTGAGAGT 57.745 45.000 0.00 0.00 0.00 3.24
3472 5445 9.970395 AGACCATATGCATATGTAAACAAATTG 57.030 29.630 33.92 21.44 38.73 2.32
3497 5470 4.657013 TGTGCACCTGGTGTATTTTCATA 58.343 39.130 26.48 11.21 35.75 2.15
3498 5471 5.260424 TGTGCACCTGGTGTATTTTCATAT 58.740 37.500 26.48 0.00 35.75 1.78
3503 5479 6.765989 GCACCTGGTGTATTTTCATATAGTCA 59.234 38.462 26.48 0.00 35.75 3.41
3522 5498 2.029200 TCAAATACCCGTACGTGCTTGA 60.029 45.455 15.21 9.97 0.00 3.02
3573 7748 4.456911 TGACAAGAACCTTCTTCATGATGC 59.543 41.667 0.00 0.00 45.23 3.91
3672 7882 2.638556 TGCTGTTTAGAGAGCGAGAC 57.361 50.000 0.00 0.00 44.68 3.36
3871 8101 1.817209 GACCCGGCTAGAAGGTCTG 59.183 63.158 15.39 0.05 45.49 3.51
3934 8164 5.728637 ATCCTTTGGACTTGAAATTCACC 57.271 39.130 0.00 0.00 32.98 4.02
3960 8190 1.069978 GACTATCAGGAGGGCAAGAGC 59.930 57.143 0.00 0.00 41.10 4.09
3983 8213 2.159254 CCCTGGTTCCATTGCATTAACG 60.159 50.000 0.00 0.00 0.00 3.18
3984 8214 2.752354 CCTGGTTCCATTGCATTAACGA 59.248 45.455 0.00 0.00 0.00 3.85
3989 8219 4.173256 GTTCCATTGCATTAACGAAAGGG 58.827 43.478 0.00 0.00 0.00 3.95
3991 8221 2.495669 CCATTGCATTAACGAAAGGGGT 59.504 45.455 0.00 0.00 0.00 4.95
3999 8229 1.823169 AACGAAAGGGGTGCGCTAGA 61.823 55.000 9.73 0.00 0.00 2.43
4005 8235 2.590007 GGGTGCGCTAGATGCCAG 60.590 66.667 9.73 0.00 38.78 4.85
4017 8248 1.079405 ATGCCAGTCGGTTGTACGG 60.079 57.895 0.00 0.00 33.28 4.02
4030 8261 4.435121 CGGTTGTACGGATAAAAGAACAGC 60.435 45.833 0.00 0.00 0.00 4.40
4031 8262 4.142752 GGTTGTACGGATAAAAGAACAGCC 60.143 45.833 0.00 0.00 32.35 4.85
4032 8263 4.274602 TGTACGGATAAAAGAACAGCCA 57.725 40.909 0.00 0.00 0.00 4.75
4058 8289 4.004314 TCTCTATCGTCCGATTCATCCTC 58.996 47.826 7.57 0.00 36.17 3.71
4065 8296 6.136541 TCGTCCGATTCATCCTCATATATG 57.863 41.667 6.36 6.36 0.00 1.78
4072 8303 7.046652 CGATTCATCCTCATATATGCTTTCCT 58.953 38.462 7.92 0.00 0.00 3.36
4093 8324 3.059982 CTCCCAGCCGTCTGACAA 58.940 61.111 8.73 0.00 42.95 3.18
4099 8330 1.581934 CAGCCGTCTGACAAGTCAAA 58.418 50.000 8.73 0.00 42.95 2.69
4133 8365 2.498807 TCATCTCATCACTAGCACGC 57.501 50.000 0.00 0.00 0.00 5.34
4139 8371 2.857152 CTCATCACTAGCACGCTTCTTC 59.143 50.000 0.00 0.00 0.00 2.87
4144 8376 3.659089 TAGCACGCTTCTTCCCCGC 62.659 63.158 0.00 0.00 0.00 6.13
4151 8383 3.952628 CTTCTTCCCCGCCGTGACC 62.953 68.421 0.00 0.00 0.00 4.02
4164 8396 3.399181 TGACCGATCACCCTGGGC 61.399 66.667 14.08 0.00 0.00 5.36
4165 8397 4.530857 GACCGATCACCCTGGGCG 62.531 72.222 14.08 8.14 0.00 6.13
4167 8399 4.096003 CCGATCACCCTGGGCGTT 62.096 66.667 14.08 0.00 0.00 4.84
4168 8400 2.511600 CGATCACCCTGGGCGTTC 60.512 66.667 14.08 7.21 0.00 3.95
4169 8401 2.511600 GATCACCCTGGGCGTTCG 60.512 66.667 14.08 0.00 0.00 3.95
4170 8402 4.096003 ATCACCCTGGGCGTTCGG 62.096 66.667 14.08 0.00 0.00 4.30
4174 8406 3.476419 CCCTGGGCGTTCGGGTAT 61.476 66.667 0.00 0.00 33.16 2.73
4175 8407 2.587889 CCTGGGCGTTCGGGTATT 59.412 61.111 0.00 0.00 0.00 1.89
4176 8408 1.078001 CCTGGGCGTTCGGGTATTT 60.078 57.895 0.00 0.00 0.00 1.40
4177 8409 1.093496 CCTGGGCGTTCGGGTATTTC 61.093 60.000 0.00 0.00 0.00 2.17
4178 8410 1.426041 CTGGGCGTTCGGGTATTTCG 61.426 60.000 0.00 0.00 0.00 3.46
4179 8411 1.153588 GGGCGTTCGGGTATTTCGA 60.154 57.895 0.00 0.00 34.62 3.71
4180 8412 0.531311 GGGCGTTCGGGTATTTCGAT 60.531 55.000 0.00 0.00 36.49 3.59
4181 8413 1.292992 GGCGTTCGGGTATTTCGATT 58.707 50.000 0.00 0.00 36.49 3.34
4182 8414 1.259770 GGCGTTCGGGTATTTCGATTC 59.740 52.381 0.00 0.00 36.49 2.52
4183 8415 1.071698 GCGTTCGGGTATTTCGATTCG 60.072 52.381 0.00 0.00 36.49 3.34
4184 8416 1.519758 CGTTCGGGTATTTCGATTCGG 59.480 52.381 6.18 0.00 36.49 4.30
4185 8417 1.862827 GTTCGGGTATTTCGATTCGGG 59.137 52.381 6.18 0.00 36.49 5.14
4186 8418 1.113788 TCGGGTATTTCGATTCGGGT 58.886 50.000 6.18 0.00 0.00 5.28
4187 8419 2.305928 TCGGGTATTTCGATTCGGGTA 58.694 47.619 6.18 0.00 0.00 3.69
4188 8420 2.034558 TCGGGTATTTCGATTCGGGTAC 59.965 50.000 6.18 6.98 0.00 3.34
4189 8421 2.035066 CGGGTATTTCGATTCGGGTACT 59.965 50.000 6.18 0.00 0.00 2.73
4190 8422 3.491447 CGGGTATTTCGATTCGGGTACTT 60.491 47.826 6.18 0.00 0.00 2.24
4191 8423 4.445453 GGGTATTTCGATTCGGGTACTTT 58.555 43.478 6.18 0.00 0.00 2.66
4192 8424 4.271776 GGGTATTTCGATTCGGGTACTTTG 59.728 45.833 6.18 0.00 0.00 2.77
4193 8425 4.271776 GGTATTTCGATTCGGGTACTTTGG 59.728 45.833 6.18 0.00 0.00 3.28
4194 8426 3.405823 TTTCGATTCGGGTACTTTGGT 57.594 42.857 6.18 0.00 0.00 3.67
4195 8427 3.405823 TTCGATTCGGGTACTTTGGTT 57.594 42.857 6.18 0.00 0.00 3.67
4196 8428 3.405823 TCGATTCGGGTACTTTGGTTT 57.594 42.857 6.18 0.00 0.00 3.27
4197 8429 4.533919 TCGATTCGGGTACTTTGGTTTA 57.466 40.909 6.18 0.00 0.00 2.01
4198 8430 5.088680 TCGATTCGGGTACTTTGGTTTAT 57.911 39.130 6.18 0.00 0.00 1.40
4199 8431 4.871557 TCGATTCGGGTACTTTGGTTTATG 59.128 41.667 6.18 0.00 0.00 1.90
4200 8432 4.034742 CGATTCGGGTACTTTGGTTTATGG 59.965 45.833 0.00 0.00 0.00 2.74
4201 8433 3.353370 TCGGGTACTTTGGTTTATGGG 57.647 47.619 0.00 0.00 0.00 4.00
4202 8434 2.643801 TCGGGTACTTTGGTTTATGGGT 59.356 45.455 0.00 0.00 0.00 4.51
4203 8435 3.843027 TCGGGTACTTTGGTTTATGGGTA 59.157 43.478 0.00 0.00 0.00 3.69
4204 8436 4.288105 TCGGGTACTTTGGTTTATGGGTAA 59.712 41.667 0.00 0.00 0.00 2.85
4205 8437 5.044993 TCGGGTACTTTGGTTTATGGGTAAT 60.045 40.000 0.00 0.00 0.00 1.89
4206 8438 5.653330 CGGGTACTTTGGTTTATGGGTAATT 59.347 40.000 0.00 0.00 0.00 1.40
4207 8439 6.183360 CGGGTACTTTGGTTTATGGGTAATTC 60.183 42.308 0.00 0.00 0.00 2.17
4208 8440 6.893554 GGGTACTTTGGTTTATGGGTAATTCT 59.106 38.462 0.00 0.00 0.00 2.40
4209 8441 7.147966 GGGTACTTTGGTTTATGGGTAATTCTG 60.148 40.741 0.00 0.00 0.00 3.02
4210 8442 7.612633 GGTACTTTGGTTTATGGGTAATTCTGA 59.387 37.037 0.00 0.00 0.00 3.27
4211 8443 9.185680 GTACTTTGGTTTATGGGTAATTCTGAT 57.814 33.333 0.00 0.00 0.00 2.90
4213 8445 9.185680 ACTTTGGTTTATGGGTAATTCTGATAC 57.814 33.333 0.00 0.00 0.00 2.24
4214 8446 9.408648 CTTTGGTTTATGGGTAATTCTGATACT 57.591 33.333 0.00 0.00 0.00 2.12
4215 8447 8.974060 TTGGTTTATGGGTAATTCTGATACTC 57.026 34.615 0.00 0.00 0.00 2.59
4216 8448 8.096621 TGGTTTATGGGTAATTCTGATACTCA 57.903 34.615 0.00 0.00 38.08 3.41
4217 8449 8.553153 TGGTTTATGGGTAATTCTGATACTCAA 58.447 33.333 0.00 0.00 37.30 3.02
4218 8450 9.403583 GGTTTATGGGTAATTCTGATACTCAAA 57.596 33.333 0.00 0.00 37.30 2.69
4224 8456 9.627123 TGGGTAATTCTGATACTCAAAAATAGG 57.373 33.333 0.00 0.00 30.98 2.57
4225 8457 9.847224 GGGTAATTCTGATACTCAAAAATAGGA 57.153 33.333 0.00 0.00 0.00 2.94
4243 8475 8.744568 AAATAGGAAACAAAAATTTTCTGCCA 57.255 26.923 3.41 0.00 34.06 4.92
4244 8476 8.744568 AATAGGAAACAAAAATTTTCTGCCAA 57.255 26.923 3.41 0.00 34.06 4.52
4245 8477 8.744568 ATAGGAAACAAAAATTTTCTGCCAAA 57.255 26.923 3.41 0.00 34.06 3.28
4246 8478 7.459795 AGGAAACAAAAATTTTCTGCCAAAA 57.540 28.000 3.41 0.00 34.06 2.44
4247 8479 7.890515 AGGAAACAAAAATTTTCTGCCAAAAA 58.109 26.923 3.41 0.00 34.06 1.94
4268 8500 6.614694 AAAATACCTGAACCCAAATTACCC 57.385 37.500 0.00 0.00 0.00 3.69
4269 8501 2.615986 ACCTGAACCCAAATTACCCC 57.384 50.000 0.00 0.00 0.00 4.95
4270 8502 1.790157 ACCTGAACCCAAATTACCCCA 59.210 47.619 0.00 0.00 0.00 4.96
4271 8503 2.180308 ACCTGAACCCAAATTACCCCAA 59.820 45.455 0.00 0.00 0.00 4.12
4272 8504 3.243724 CCTGAACCCAAATTACCCCAAA 58.756 45.455 0.00 0.00 0.00 3.28
4273 8505 3.843619 CCTGAACCCAAATTACCCCAAAT 59.156 43.478 0.00 0.00 0.00 2.32
4274 8506 4.288366 CCTGAACCCAAATTACCCCAAATT 59.712 41.667 0.00 0.00 0.00 1.82
4275 8507 5.222027 CCTGAACCCAAATTACCCCAAATTT 60.222 40.000 0.00 0.00 39.14 1.82
4276 8508 5.870706 TGAACCCAAATTACCCCAAATTTC 58.129 37.500 0.00 0.00 37.03 2.17
4277 8509 4.545208 ACCCAAATTACCCCAAATTTCG 57.455 40.909 0.00 0.00 37.03 3.46
4278 8510 3.262151 ACCCAAATTACCCCAAATTTCGG 59.738 43.478 0.00 0.00 40.72 4.30
4279 8511 3.262151 CCCAAATTACCCCAAATTTCGGT 59.738 43.478 10.56 10.56 37.03 4.69
4280 8512 4.263112 CCCAAATTACCCCAAATTTCGGTT 60.263 41.667 10.91 0.00 37.03 4.44
4281 8513 4.932799 CCAAATTACCCCAAATTTCGGTTC 59.067 41.667 10.91 0.00 37.03 3.62
4282 8514 4.443913 AATTACCCCAAATTTCGGTTCG 57.556 40.909 10.91 0.00 0.00 3.95
4283 8515 1.823797 TACCCCAAATTTCGGTTCGG 58.176 50.000 10.91 5.68 0.00 4.30
4284 8516 0.896479 ACCCCAAATTTCGGTTCGGG 60.896 55.000 0.94 1.86 35.06 5.14
4285 8517 0.896479 CCCCAAATTTCGGTTCGGGT 60.896 55.000 7.92 0.00 31.28 5.28
4286 8518 1.613785 CCCCAAATTTCGGTTCGGGTA 60.614 52.381 7.92 0.00 31.28 3.69
4287 8519 2.161030 CCCAAATTTCGGTTCGGGTAA 58.839 47.619 1.63 0.00 0.00 2.85
4288 8520 2.756207 CCCAAATTTCGGTTCGGGTAAT 59.244 45.455 1.63 0.00 0.00 1.89
4289 8521 3.193903 CCCAAATTTCGGTTCGGGTAATT 59.806 43.478 1.63 0.00 0.00 1.40
4290 8522 4.417506 CCAAATTTCGGTTCGGGTAATTC 58.582 43.478 0.00 0.00 0.00 2.17
4291 8523 4.092816 CAAATTTCGGTTCGGGTAATTCG 58.907 43.478 0.00 0.00 0.00 3.34
4292 8524 1.724429 TTTCGGTTCGGGTAATTCGG 58.276 50.000 0.00 0.00 0.00 4.30
4293 8525 0.108233 TTCGGTTCGGGTAATTCGGG 60.108 55.000 0.00 0.00 0.00 5.14
4294 8526 1.218854 CGGTTCGGGTAATTCGGGT 59.781 57.895 0.00 0.00 0.00 5.28
4295 8527 0.459489 CGGTTCGGGTAATTCGGGTA 59.541 55.000 0.00 0.00 0.00 3.69
4296 8528 1.802508 CGGTTCGGGTAATTCGGGTAC 60.803 57.143 0.00 0.00 0.00 3.34
4317 8549 8.117813 GGTACCCAAAGAAACAGAAATATTCA 57.882 34.615 0.00 0.00 0.00 2.57
4318 8550 8.244113 GGTACCCAAAGAAACAGAAATATTCAG 58.756 37.037 0.00 0.00 0.00 3.02
4319 8551 9.010029 GTACCCAAAGAAACAGAAATATTCAGA 57.990 33.333 0.00 0.00 0.00 3.27
4320 8552 8.115490 ACCCAAAGAAACAGAAATATTCAGAG 57.885 34.615 0.00 0.00 0.00 3.35
4321 8553 7.031975 CCCAAAGAAACAGAAATATTCAGAGC 58.968 38.462 0.00 0.00 0.00 4.09
4322 8554 7.309377 CCCAAAGAAACAGAAATATTCAGAGCA 60.309 37.037 0.00 0.00 0.00 4.26
4323 8555 7.540055 CCAAAGAAACAGAAATATTCAGAGCAC 59.460 37.037 0.00 0.00 0.00 4.40
4324 8556 7.750229 AAGAAACAGAAATATTCAGAGCACA 57.250 32.000 0.00 0.00 0.00 4.57
4325 8557 7.138692 AGAAACAGAAATATTCAGAGCACAC 57.861 36.000 0.00 0.00 0.00 3.82
4326 8558 6.712095 AGAAACAGAAATATTCAGAGCACACA 59.288 34.615 0.00 0.00 0.00 3.72
4327 8559 7.392673 AGAAACAGAAATATTCAGAGCACACAT 59.607 33.333 0.00 0.00 0.00 3.21
4328 8560 6.674694 ACAGAAATATTCAGAGCACACATC 57.325 37.500 0.00 0.00 0.00 3.06
4329 8561 6.175471 ACAGAAATATTCAGAGCACACATCA 58.825 36.000 0.00 0.00 0.00 3.07
4330 8562 6.315642 ACAGAAATATTCAGAGCACACATCAG 59.684 38.462 0.00 0.00 0.00 2.90
4331 8563 5.296283 AGAAATATTCAGAGCACACATCAGC 59.704 40.000 0.00 0.00 0.00 4.26
4332 8564 2.783609 ATTCAGAGCACACATCAGCT 57.216 45.000 0.00 0.00 45.25 4.24
4333 8565 2.556144 TTCAGAGCACACATCAGCTT 57.444 45.000 0.00 0.00 42.04 3.74
4334 8566 2.556144 TCAGAGCACACATCAGCTTT 57.444 45.000 0.00 0.00 42.04 3.51
4335 8567 2.854963 TCAGAGCACACATCAGCTTTT 58.145 42.857 0.00 0.00 42.04 2.27
4336 8568 2.551032 TCAGAGCACACATCAGCTTTTG 59.449 45.455 0.00 0.00 42.04 2.44
4337 8569 1.884579 AGAGCACACATCAGCTTTTGG 59.115 47.619 0.00 0.00 42.04 3.28
4338 8570 1.610522 GAGCACACATCAGCTTTTGGT 59.389 47.619 0.00 0.00 42.04 3.67
4339 8571 2.813754 GAGCACACATCAGCTTTTGGTA 59.186 45.455 0.00 0.00 42.04 3.25
4340 8572 3.424703 AGCACACATCAGCTTTTGGTAT 58.575 40.909 0.00 0.00 38.01 2.73
4341 8573 3.192001 AGCACACATCAGCTTTTGGTATG 59.808 43.478 0.00 0.00 38.01 2.39
4342 8574 3.191162 GCACACATCAGCTTTTGGTATGA 59.809 43.478 0.00 0.00 0.00 2.15
4343 8575 4.321156 GCACACATCAGCTTTTGGTATGAA 60.321 41.667 0.00 0.00 0.00 2.57
4344 8576 5.622914 GCACACATCAGCTTTTGGTATGAAT 60.623 40.000 0.00 0.00 0.00 2.57
4345 8577 6.404623 GCACACATCAGCTTTTGGTATGAATA 60.405 38.462 0.00 0.00 0.00 1.75
4346 8578 7.537715 CACACATCAGCTTTTGGTATGAATAA 58.462 34.615 0.00 0.00 0.00 1.40
4347 8579 8.028354 CACACATCAGCTTTTGGTATGAATAAA 58.972 33.333 0.00 0.00 0.00 1.40
4348 8580 8.752187 ACACATCAGCTTTTGGTATGAATAAAT 58.248 29.630 0.00 0.00 0.00 1.40
4349 8581 9.241317 CACATCAGCTTTTGGTATGAATAAATC 57.759 33.333 0.00 0.00 0.00 2.17
4350 8582 8.131100 ACATCAGCTTTTGGTATGAATAAATCG 58.869 33.333 0.00 0.00 0.00 3.34
4351 8583 7.026631 TCAGCTTTTGGTATGAATAAATCGG 57.973 36.000 0.00 0.00 0.00 4.18
4352 8584 5.687285 CAGCTTTTGGTATGAATAAATCGGC 59.313 40.000 0.00 0.00 0.00 5.54
4353 8585 5.594317 AGCTTTTGGTATGAATAAATCGGCT 59.406 36.000 0.00 0.00 0.00 5.52
4354 8586 6.770785 AGCTTTTGGTATGAATAAATCGGCTA 59.229 34.615 0.00 0.00 0.00 3.93
4355 8587 7.041098 AGCTTTTGGTATGAATAAATCGGCTAG 60.041 37.037 0.00 0.00 0.00 3.42
4356 8588 7.255139 GCTTTTGGTATGAATAAATCGGCTAGT 60.255 37.037 0.00 0.00 0.00 2.57
4357 8589 9.268268 CTTTTGGTATGAATAAATCGGCTAGTA 57.732 33.333 0.00 0.00 0.00 1.82
4358 8590 9.787435 TTTTGGTATGAATAAATCGGCTAGTAT 57.213 29.630 0.00 0.00 0.00 2.12
4359 8591 8.771920 TTGGTATGAATAAATCGGCTAGTATG 57.228 34.615 0.00 0.00 0.00 2.39
4360 8592 7.327975 TGGTATGAATAAATCGGCTAGTATGG 58.672 38.462 0.00 0.00 0.00 2.74
4361 8593 6.761714 GGTATGAATAAATCGGCTAGTATGGG 59.238 42.308 0.00 0.00 0.00 4.00
4362 8594 5.818678 TGAATAAATCGGCTAGTATGGGT 57.181 39.130 0.00 0.00 0.00 4.51
4363 8595 6.921486 TGAATAAATCGGCTAGTATGGGTA 57.079 37.500 0.00 0.00 0.00 3.69
4364 8596 7.490657 TGAATAAATCGGCTAGTATGGGTAT 57.509 36.000 0.00 0.00 0.00 2.73
4365 8597 7.913789 TGAATAAATCGGCTAGTATGGGTATT 58.086 34.615 0.00 0.00 0.00 1.89
4366 8598 8.380099 TGAATAAATCGGCTAGTATGGGTATTT 58.620 33.333 0.00 0.00 0.00 1.40
4367 8599 9.227777 GAATAAATCGGCTAGTATGGGTATTTT 57.772 33.333 0.00 0.00 0.00 1.82
4369 8601 9.886132 ATAAATCGGCTAGTATGGGTATTTTAG 57.114 33.333 0.00 0.00 0.00 1.85
4370 8602 6.930068 ATCGGCTAGTATGGGTATTTTAGT 57.070 37.500 0.00 0.00 0.00 2.24
4371 8603 6.736110 TCGGCTAGTATGGGTATTTTAGTT 57.264 37.500 0.00 0.00 0.00 2.24
4372 8604 7.838079 TCGGCTAGTATGGGTATTTTAGTTA 57.162 36.000 0.00 0.00 0.00 2.24
4373 8605 7.889469 TCGGCTAGTATGGGTATTTTAGTTAG 58.111 38.462 0.00 0.00 0.00 2.34
4374 8606 7.506938 TCGGCTAGTATGGGTATTTTAGTTAGT 59.493 37.037 0.00 0.00 0.00 2.24
4375 8607 8.796475 CGGCTAGTATGGGTATTTTAGTTAGTA 58.204 37.037 0.00 0.00 0.00 1.82
4380 8612 9.456459 AGTATGGGTATTTTAGTTAGTATGGGT 57.544 33.333 0.00 0.00 0.00 4.51
4384 8616 9.055689 TGGGTATTTTAGTTAGTATGGGTAACA 57.944 33.333 0.00 0.00 33.52 2.41
4390 8622 9.661563 TTTTAGTTAGTATGGGTAACATGACAG 57.338 33.333 0.00 0.00 40.82 3.51
4391 8623 6.869206 AGTTAGTATGGGTAACATGACAGT 57.131 37.500 0.00 0.00 40.82 3.55
4392 8624 6.640518 AGTTAGTATGGGTAACATGACAGTG 58.359 40.000 0.00 0.00 40.82 3.66
4393 8625 6.212791 AGTTAGTATGGGTAACATGACAGTGT 59.787 38.462 0.00 0.00 40.82 3.55
4394 8626 7.398047 AGTTAGTATGGGTAACATGACAGTGTA 59.602 37.037 0.00 0.00 40.82 2.90
4395 8627 6.614694 AGTATGGGTAACATGACAGTGTAA 57.385 37.500 0.00 0.00 40.82 2.41
4396 8628 7.195374 AGTATGGGTAACATGACAGTGTAAT 57.805 36.000 0.00 0.00 40.82 1.89
4397 8629 8.313944 AGTATGGGTAACATGACAGTGTAATA 57.686 34.615 0.00 0.00 40.82 0.98
4398 8630 8.764558 AGTATGGGTAACATGACAGTGTAATAA 58.235 33.333 0.00 0.00 40.82 1.40
4399 8631 9.555727 GTATGGGTAACATGACAGTGTAATAAT 57.444 33.333 0.00 0.00 40.82 1.28
4401 8633 9.778741 ATGGGTAACATGACAGTGTAATAATAG 57.221 33.333 0.00 0.00 38.70 1.73
4402 8634 7.713507 TGGGTAACATGACAGTGTAATAATAGC 59.286 37.037 0.00 0.97 39.74 2.97
4403 8635 7.713507 GGGTAACATGACAGTGTAATAATAGCA 59.286 37.037 0.00 0.00 39.74 3.49
4404 8636 9.273016 GGTAACATGACAGTGTAATAATAGCAT 57.727 33.333 0.00 0.00 0.00 3.79
4406 8638 8.962884 AACATGACAGTGTAATAATAGCATGA 57.037 30.769 18.74 0.00 35.73 3.07
4407 8639 8.962884 ACATGACAGTGTAATAATAGCATGAA 57.037 30.769 18.74 0.00 35.73 2.57
4408 8640 9.565090 ACATGACAGTGTAATAATAGCATGAAT 57.435 29.630 18.74 1.34 35.73 2.57
4434 8666 8.699283 AATTTGGTTAGTATGAACTAGTCGTC 57.301 34.615 0.00 0.00 39.36 4.20
4435 8667 6.822667 TTGGTTAGTATGAACTAGTCGTCA 57.177 37.500 0.00 0.00 39.36 4.35
4436 8668 6.822667 TGGTTAGTATGAACTAGTCGTCAA 57.177 37.500 0.00 0.00 39.36 3.18
4437 8669 6.615088 TGGTTAGTATGAACTAGTCGTCAAC 58.385 40.000 0.00 0.00 39.36 3.18
4438 8670 6.032717 GGTTAGTATGAACTAGTCGTCAACC 58.967 44.000 0.00 0.00 39.36 3.77
4439 8671 4.715527 AGTATGAACTAGTCGTCAACCC 57.284 45.455 0.00 0.00 32.84 4.11
4440 8672 2.649331 ATGAACTAGTCGTCAACCCG 57.351 50.000 0.00 0.00 0.00 5.28
4441 8673 1.321474 TGAACTAGTCGTCAACCCGT 58.679 50.000 0.00 0.00 0.00 5.28
4442 8674 1.001048 TGAACTAGTCGTCAACCCGTG 60.001 52.381 0.00 0.00 0.00 4.94
4443 8675 0.319297 AACTAGTCGTCAACCCGTGC 60.319 55.000 0.00 0.00 0.00 5.34
4444 8676 1.287815 CTAGTCGTCAACCCGTGCA 59.712 57.895 0.00 0.00 0.00 4.57
4445 8677 1.007038 TAGTCGTCAACCCGTGCAC 60.007 57.895 6.82 6.82 0.00 4.57
4446 8678 2.424705 TAGTCGTCAACCCGTGCACC 62.425 60.000 12.15 0.00 0.00 5.01
4447 8679 3.542676 TCGTCAACCCGTGCACCT 61.543 61.111 12.15 0.00 0.00 4.00
4448 8680 3.345808 CGTCAACCCGTGCACCTG 61.346 66.667 12.15 4.88 0.00 4.00
4449 8681 3.660111 GTCAACCCGTGCACCTGC 61.660 66.667 12.15 0.00 42.50 4.85
4462 8694 4.227134 CCTGCACGGGCTAGCGAT 62.227 66.667 12.74 0.00 41.91 4.58
4463 8695 2.202932 CTGCACGGGCTAGCGATT 60.203 61.111 12.74 0.00 41.91 3.34
4464 8696 1.815421 CTGCACGGGCTAGCGATTT 60.815 57.895 12.74 0.00 41.91 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.280797 TGTCGCCACTCTGCAACC 60.281 61.111 0.00 0.00 0.00 3.77
23 24 1.447317 CTTGAGCAGGTTGGTTGCGT 61.447 55.000 0.00 0.00 45.98 5.24
32 33 0.107456 CTCACACCACTTGAGCAGGT 59.893 55.000 0.00 0.00 34.41 4.00
35 36 0.106708 GGACTCACACCACTTGAGCA 59.893 55.000 0.00 0.00 43.79 4.26
41 42 2.561956 CCGACGGACTCACACCACT 61.562 63.158 8.64 0.00 0.00 4.00
65 66 6.015434 ACAAGAAAATCACAATAAGGACCCAC 60.015 38.462 0.00 0.00 0.00 4.61
66 67 6.074648 ACAAGAAAATCACAATAAGGACCCA 58.925 36.000 0.00 0.00 0.00 4.51
131 132 3.518634 TTGTGTGAAAAGACCCTTTGC 57.481 42.857 0.00 0.00 0.00 3.68
195 1935 5.578727 AGTCTATGCTTTAGTGCTTTCTTCG 59.421 40.000 0.00 0.00 0.00 3.79
253 1993 4.294232 CGATTGCTGCCTATATATCTCCG 58.706 47.826 0.00 0.00 0.00 4.63
287 2027 9.890629 AAAAATTGGTAGAGAAGCTTTTCTTTT 57.109 25.926 23.11 14.39 34.56 2.27
396 2147 0.386352 CGTGCGACTTCTCGGTGTTA 60.386 55.000 0.00 0.00 40.53 2.41
415 2166 4.287766 TCTCTTTTGTTCTAGGGCCTTC 57.712 45.455 13.45 0.71 0.00 3.46
558 2309 0.669318 TAAGTCCACGAAAGCGCAGG 60.669 55.000 11.47 1.04 42.48 4.85
599 2350 2.369532 AGCTACAACGGTTAGGGTTTCA 59.630 45.455 0.00 0.00 0.00 2.69
631 2382 1.268352 CGAGGAGTCCGGAATCTCATC 59.732 57.143 29.13 24.54 37.89 2.92
672 2423 1.600023 CCGGTTGTTGCTGTTCCTAA 58.400 50.000 0.00 0.00 0.00 2.69
694 2447 3.311110 GTCGTCCTCACAGGGGCA 61.311 66.667 0.00 0.00 35.59 5.36
728 2481 3.006940 ACATGTGTATAGCCGGTTGTTG 58.993 45.455 1.90 0.00 0.00 3.33
730 2483 3.267483 GAACATGTGTATAGCCGGTTGT 58.733 45.455 1.90 0.00 0.00 3.32
732 2485 3.620427 TGAACATGTGTATAGCCGGTT 57.380 42.857 1.90 0.00 0.00 4.44
733 2486 3.133901 TCATGAACATGTGTATAGCCGGT 59.866 43.478 1.90 0.00 39.72 5.28
735 2488 4.751600 ACATCATGAACATGTGTATAGCCG 59.248 41.667 13.35 0.00 39.72 5.52
736 2489 5.759763 TGACATCATGAACATGTGTATAGCC 59.240 40.000 13.35 6.83 39.72 3.93
738 2491 8.429493 ACTTGACATCATGAACATGTGTATAG 57.571 34.615 13.35 15.70 39.72 1.31
739 2492 9.883142 TTACTTGACATCATGAACATGTGTATA 57.117 29.630 19.43 8.02 39.72 1.47
740 2493 8.668353 GTTACTTGACATCATGAACATGTGTAT 58.332 33.333 19.43 0.00 39.72 2.29
741 2494 7.659390 TGTTACTTGACATCATGAACATGTGTA 59.341 33.333 19.43 9.44 39.72 2.90
852 2622 2.803817 CGGGGTTACGGGGGATGAG 61.804 68.421 0.00 0.00 0.00 2.90
971 2746 0.391661 CAAGCACCCTCGCAGTACAT 60.392 55.000 0.00 0.00 0.00 2.29
1016 2791 4.381505 CGGAGAAGGAAGAAGAAGAAGGAG 60.382 50.000 0.00 0.00 0.00 3.69
1017 2792 3.511934 CGGAGAAGGAAGAAGAAGAAGGA 59.488 47.826 0.00 0.00 0.00 3.36
1018 2793 3.368948 CCGGAGAAGGAAGAAGAAGAAGG 60.369 52.174 0.00 0.00 0.00 3.46
1021 2796 1.550976 GCCGGAGAAGGAAGAAGAAGA 59.449 52.381 5.05 0.00 0.00 2.87
1224 3002 0.684153 AAATGATTGGAGCCACGGGG 60.684 55.000 0.00 0.00 37.18 5.73
1360 3139 0.955905 ATGCACCACAACGTAAACCC 59.044 50.000 0.00 0.00 0.00 4.11
1361 3140 2.033550 TGAATGCACCACAACGTAAACC 59.966 45.455 0.00 0.00 0.00 3.27
1469 3248 0.326264 ATGAAAGCGGAAGGTGAGCT 59.674 50.000 0.00 0.00 43.76 4.09
1473 3255 4.497473 TTAACAATGAAAGCGGAAGGTG 57.503 40.909 0.00 0.00 43.76 4.00
1479 3261 6.785191 ACATCTACATTAACAATGAAAGCGG 58.215 36.000 5.92 2.39 41.46 5.52
1480 3262 8.673626 AAACATCTACATTAACAATGAAAGCG 57.326 30.769 5.92 0.00 41.46 4.68
1499 3290 4.668177 CGACCACGAACCACATAAAACATC 60.668 45.833 0.00 0.00 42.66 3.06
1501 3292 2.544686 CGACCACGAACCACATAAAACA 59.455 45.455 0.00 0.00 42.66 2.83
1516 3307 5.049405 AGAGAACAAAAACATGATCGACCAC 60.049 40.000 0.00 0.00 0.00 4.16
1626 3421 6.763610 GGGAGAACTTTCAGATAATGTACCAG 59.236 42.308 0.00 0.00 0.00 4.00
1773 3579 2.525629 TCGGTGCAGAAGACCCCA 60.526 61.111 0.00 0.00 0.00 4.96
1877 3686 3.790091 TCTCGATGCATGAAAGAAGAGG 58.210 45.455 2.46 0.00 0.00 3.69
1878 3687 5.791367 TTTCTCGATGCATGAAAGAAGAG 57.209 39.130 2.46 1.62 0.00 2.85
1879 3688 5.702670 ACTTTTCTCGATGCATGAAAGAAGA 59.297 36.000 2.46 4.81 32.36 2.87
1901 3721 6.180472 AGGTCCATGAAAATGATCGTTTACT 58.820 36.000 13.21 0.00 0.00 2.24
1929 3749 3.382083 TCCTAGTGAGGTATGTGCTCA 57.618 47.619 0.00 0.00 44.19 4.26
1959 3779 0.526211 ACGCACATCTCACGCTTAGA 59.474 50.000 0.00 0.00 0.00 2.10
1966 3786 0.108615 AGCCACTACGCACATCTCAC 60.109 55.000 0.00 0.00 0.00 3.51
2008 3828 2.747989 GGTTTCCCGATTTCTCCTCAAC 59.252 50.000 0.00 0.00 0.00 3.18
2098 3964 5.172205 TCACACAAAAATGATGATGGCATG 58.828 37.500 3.81 0.00 34.11 4.06
2107 3974 5.895636 TCGCCTATTCACACAAAAATGAT 57.104 34.783 0.00 0.00 0.00 2.45
2132 4001 4.095932 ACACGATCTGCTTACGAATGACTA 59.904 41.667 0.00 0.00 0.00 2.59
2135 4004 3.503827 ACACGATCTGCTTACGAATGA 57.496 42.857 0.00 0.00 0.00 2.57
2238 4113 4.899239 GCCGGGCTGACCATCTCG 62.899 72.222 12.87 0.00 40.22 4.04
2262 4137 1.663739 CTGGCTTTGCACTGCATGT 59.336 52.632 4.10 0.00 38.76 3.21
2264 4139 0.251297 TACCTGGCTTTGCACTGCAT 60.251 50.000 4.10 0.00 38.76 3.96
2420 4301 9.620660 AGGTTTGAAAGCGTTTTACTTATATTG 57.379 29.630 0.00 0.00 0.00 1.90
2435 4322 6.756542 ACAGTTGAATTGTAAGGTTTGAAAGC 59.243 34.615 0.00 0.00 0.00 3.51
2460 4347 7.600065 ACTTTAGTGCTAAGAATCGACTACAA 58.400 34.615 0.00 0.00 0.00 2.41
2484 4371 7.010830 GGGAAACGTTGTTCTCCATATAACTAC 59.989 40.741 16.50 0.00 0.00 2.73
2500 4391 1.266989 GCAGGAGAAAGGGAAACGTTG 59.733 52.381 0.00 0.00 38.67 4.10
2648 4544 1.669437 ACACACACACGCACACACA 60.669 52.632 0.00 0.00 0.00 3.72
2649 4545 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2650 4546 1.669437 ACACACACACACGCACACA 60.669 52.632 0.00 0.00 0.00 3.72
2651 4547 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
2652 4548 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
2653 4549 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
2654 4550 3.033166 GCACACACACACACACGCA 62.033 57.895 0.00 0.00 0.00 5.24
2655 4551 1.425267 TAGCACACACACACACACGC 61.425 55.000 0.00 0.00 0.00 5.34
2656 4552 1.217001 ATAGCACACACACACACACG 58.783 50.000 0.00 0.00 0.00 4.49
2657 4553 4.690748 AGATAATAGCACACACACACACAC 59.309 41.667 0.00 0.00 0.00 3.82
2658 4554 4.893608 AGATAATAGCACACACACACACA 58.106 39.130 0.00 0.00 0.00 3.72
2659 4555 5.862924 AAGATAATAGCACACACACACAC 57.137 39.130 0.00 0.00 0.00 3.82
2660 4556 6.930731 TCTAAGATAATAGCACACACACACA 58.069 36.000 0.00 0.00 0.00 3.72
2661 4557 7.330946 TGTTCTAAGATAATAGCACACACACAC 59.669 37.037 0.00 0.00 26.59 3.82
2662 4558 7.382898 TGTTCTAAGATAATAGCACACACACA 58.617 34.615 0.00 0.00 26.59 3.72
2663 4559 7.827819 TGTTCTAAGATAATAGCACACACAC 57.172 36.000 0.00 0.00 26.59 3.82
2664 4560 8.717821 GTTTGTTCTAAGATAATAGCACACACA 58.282 33.333 0.00 0.00 33.11 3.72
3054 5001 6.262944 TGAACTCATCTGCATTACACAAAACT 59.737 34.615 0.00 0.00 0.00 2.66
3166 5113 3.567797 GCGCTGAACCTGATCGCC 61.568 66.667 0.00 0.00 39.91 5.54
3330 5303 3.456280 GCAAAACTCTCACAAATTGGCA 58.544 40.909 0.00 0.00 0.00 4.92
3472 5445 0.609131 AATACACCAGGTGCACAGCC 60.609 55.000 20.48 0.48 36.98 4.85
3497 5470 3.382546 AGCACGTACGGGTATTTGACTAT 59.617 43.478 20.35 0.00 0.00 2.12
3498 5471 2.754552 AGCACGTACGGGTATTTGACTA 59.245 45.455 20.35 0.00 0.00 2.59
3503 5479 2.747396 TCAAGCACGTACGGGTATTT 57.253 45.000 20.35 8.71 0.00 1.40
3522 5498 6.487668 TCATGTCAGATTTTTCTCACACACAT 59.512 34.615 0.00 0.00 0.00 3.21
3573 7748 2.271800 CCTCGGATTTTCCTCAAGACG 58.728 52.381 0.00 0.00 33.30 4.18
3672 7882 2.874780 GCGAGTAGGCACGTCACG 60.875 66.667 0.00 0.00 0.00 4.35
3832 8062 6.357367 GGTCTCACAAGTAACCCATATTGAT 58.643 40.000 0.00 0.00 0.00 2.57
3919 8149 7.511959 AGTCTAAAAGGTGAATTTCAAGTCC 57.488 36.000 0.00 0.00 0.00 3.85
3934 8164 5.129485 TCTTGCCCTCCTGATAGTCTAAAAG 59.871 44.000 0.00 0.00 0.00 2.27
3960 8190 0.618393 AATGCAATGGAACCAGGGGG 60.618 55.000 0.00 0.00 41.29 5.40
3961 8191 2.157640 TAATGCAATGGAACCAGGGG 57.842 50.000 0.00 0.00 0.00 4.79
3983 8213 1.440145 GCATCTAGCGCACCCCTTTC 61.440 60.000 11.47 0.00 0.00 2.62
3984 8214 1.452108 GCATCTAGCGCACCCCTTT 60.452 57.895 11.47 0.00 0.00 3.11
3999 8229 1.079405 CCGTACAACCGACTGGCAT 60.079 57.895 0.00 0.00 39.70 4.40
4005 8235 4.685628 TGTTCTTTTATCCGTACAACCGAC 59.314 41.667 0.00 0.00 0.00 4.79
4017 8248 3.942115 GAGAGGGTGGCTGTTCTTTTATC 59.058 47.826 0.00 0.00 0.00 1.75
4030 8261 0.179026 TCGGACGATAGAGAGGGTGG 60.179 60.000 0.00 0.00 41.38 4.61
4031 8262 1.898902 ATCGGACGATAGAGAGGGTG 58.101 55.000 5.27 0.00 41.38 4.61
4032 8263 2.158652 TGAATCGGACGATAGAGAGGGT 60.159 50.000 7.72 0.00 41.38 4.34
4058 8289 4.225942 TGGGAGCCTAGGAAAGCATATATG 59.774 45.833 14.75 8.45 0.00 1.78
4065 8296 1.153066 GCTGGGAGCCTAGGAAAGC 60.153 63.158 14.75 9.26 34.48 3.51
4123 8355 0.741221 GGGGAAGAAGCGTGCTAGTG 60.741 60.000 0.00 0.00 0.00 2.74
4125 8357 1.519455 CGGGGAAGAAGCGTGCTAG 60.519 63.158 0.00 0.00 0.00 3.42
4133 8365 2.434359 GTCACGGCGGGGAAGAAG 60.434 66.667 10.28 0.00 0.00 2.85
4151 8383 2.511600 GAACGCCCAGGGTGATCG 60.512 66.667 27.04 13.91 36.58 3.69
4152 8384 2.511600 CGAACGCCCAGGGTGATC 60.512 66.667 27.04 21.93 36.58 2.92
4153 8385 4.096003 CCGAACGCCCAGGGTGAT 62.096 66.667 27.04 14.79 36.58 3.06
4158 8390 1.078001 AAATACCCGAACGCCCAGG 60.078 57.895 0.00 0.00 0.00 4.45
4159 8391 1.426041 CGAAATACCCGAACGCCCAG 61.426 60.000 0.00 0.00 0.00 4.45
4160 8392 1.448189 CGAAATACCCGAACGCCCA 60.448 57.895 0.00 0.00 0.00 5.36
4161 8393 0.531311 ATCGAAATACCCGAACGCCC 60.531 55.000 0.00 0.00 39.62 6.13
4162 8394 1.259770 GAATCGAAATACCCGAACGCC 59.740 52.381 0.00 0.00 39.62 5.68
4163 8395 1.071698 CGAATCGAAATACCCGAACGC 60.072 52.381 0.00 0.00 39.62 4.84
4164 8396 1.519758 CCGAATCGAAATACCCGAACG 59.480 52.381 3.36 0.00 39.62 3.95
4165 8397 1.862827 CCCGAATCGAAATACCCGAAC 59.137 52.381 3.36 0.00 39.62 3.95
4166 8398 1.481772 ACCCGAATCGAAATACCCGAA 59.518 47.619 3.36 0.00 39.62 4.30
4167 8399 1.113788 ACCCGAATCGAAATACCCGA 58.886 50.000 3.36 0.00 40.53 5.14
4168 8400 2.035066 AGTACCCGAATCGAAATACCCG 59.965 50.000 3.36 0.00 0.00 5.28
4169 8401 3.740631 AGTACCCGAATCGAAATACCC 57.259 47.619 3.36 0.00 0.00 3.69
4170 8402 4.271776 CCAAAGTACCCGAATCGAAATACC 59.728 45.833 3.36 0.00 0.00 2.73
4171 8403 4.872124 ACCAAAGTACCCGAATCGAAATAC 59.128 41.667 3.36 3.62 0.00 1.89
4172 8404 5.088680 ACCAAAGTACCCGAATCGAAATA 57.911 39.130 3.36 0.00 0.00 1.40
4173 8405 3.946606 ACCAAAGTACCCGAATCGAAAT 58.053 40.909 3.36 0.00 0.00 2.17
4174 8406 3.405823 ACCAAAGTACCCGAATCGAAA 57.594 42.857 3.36 0.00 0.00 3.46
4175 8407 3.405823 AACCAAAGTACCCGAATCGAA 57.594 42.857 3.36 0.00 0.00 3.71
4176 8408 3.405823 AAACCAAAGTACCCGAATCGA 57.594 42.857 3.36 0.00 0.00 3.59
4177 8409 4.034742 CCATAAACCAAAGTACCCGAATCG 59.965 45.833 0.00 0.00 0.00 3.34
4178 8410 4.337274 CCCATAAACCAAAGTACCCGAATC 59.663 45.833 0.00 0.00 0.00 2.52
4179 8411 4.264038 ACCCATAAACCAAAGTACCCGAAT 60.264 41.667 0.00 0.00 0.00 3.34
4180 8412 3.074242 ACCCATAAACCAAAGTACCCGAA 59.926 43.478 0.00 0.00 0.00 4.30
4181 8413 2.643801 ACCCATAAACCAAAGTACCCGA 59.356 45.455 0.00 0.00 0.00 5.14
4182 8414 3.076079 ACCCATAAACCAAAGTACCCG 57.924 47.619 0.00 0.00 0.00 5.28
4183 8415 6.893554 AGAATTACCCATAAACCAAAGTACCC 59.106 38.462 0.00 0.00 0.00 3.69
4184 8416 7.612633 TCAGAATTACCCATAAACCAAAGTACC 59.387 37.037 0.00 0.00 0.00 3.34
4185 8417 8.570068 TCAGAATTACCCATAAACCAAAGTAC 57.430 34.615 0.00 0.00 0.00 2.73
4187 8419 9.185680 GTATCAGAATTACCCATAAACCAAAGT 57.814 33.333 0.00 0.00 0.00 2.66
4188 8420 9.408648 AGTATCAGAATTACCCATAAACCAAAG 57.591 33.333 0.00 0.00 0.00 2.77
4189 8421 9.403583 GAGTATCAGAATTACCCATAAACCAAA 57.596 33.333 0.00 0.00 33.17 3.28
4190 8422 8.553153 TGAGTATCAGAATTACCCATAAACCAA 58.447 33.333 0.00 0.00 42.56 3.67
4191 8423 8.096621 TGAGTATCAGAATTACCCATAAACCA 57.903 34.615 0.00 0.00 42.56 3.67
4217 8449 9.183368 TGGCAGAAAATTTTTGTTTCCTATTTT 57.817 25.926 4.63 0.00 35.92 1.82
4218 8450 8.744568 TGGCAGAAAATTTTTGTTTCCTATTT 57.255 26.923 4.63 0.00 35.92 1.40
4219 8451 8.744568 TTGGCAGAAAATTTTTGTTTCCTATT 57.255 26.923 4.63 0.00 35.92 1.73
4220 8452 8.744568 TTTGGCAGAAAATTTTTGTTTCCTAT 57.255 26.923 4.63 0.00 35.92 2.57
4221 8453 8.567285 TTTTGGCAGAAAATTTTTGTTTCCTA 57.433 26.923 4.63 0.00 35.92 2.94
4222 8454 7.459795 TTTTGGCAGAAAATTTTTGTTTCCT 57.540 28.000 4.63 0.00 35.92 3.36
4244 8476 6.013206 GGGGTAATTTGGGTTCAGGTATTTTT 60.013 38.462 0.00 0.00 0.00 1.94
4245 8477 5.486063 GGGGTAATTTGGGTTCAGGTATTTT 59.514 40.000 0.00 0.00 0.00 1.82
4246 8478 5.027460 GGGGTAATTTGGGTTCAGGTATTT 58.973 41.667 0.00 0.00 0.00 1.40
4247 8479 4.046103 TGGGGTAATTTGGGTTCAGGTATT 59.954 41.667 0.00 0.00 0.00 1.89
4248 8480 3.598782 TGGGGTAATTTGGGTTCAGGTAT 59.401 43.478 0.00 0.00 0.00 2.73
4249 8481 2.994581 TGGGGTAATTTGGGTTCAGGTA 59.005 45.455 0.00 0.00 0.00 3.08
4250 8482 1.790157 TGGGGTAATTTGGGTTCAGGT 59.210 47.619 0.00 0.00 0.00 4.00
4251 8483 2.614134 TGGGGTAATTTGGGTTCAGG 57.386 50.000 0.00 0.00 0.00 3.86
4252 8484 5.497464 AATTTGGGGTAATTTGGGTTCAG 57.503 39.130 0.00 0.00 0.00 3.02
4253 8485 5.511545 CGAAATTTGGGGTAATTTGGGTTCA 60.512 40.000 0.00 0.00 37.72 3.18
4254 8486 4.932799 CGAAATTTGGGGTAATTTGGGTTC 59.067 41.667 0.00 0.00 37.72 3.62
4255 8487 4.263112 CCGAAATTTGGGGTAATTTGGGTT 60.263 41.667 11.21 0.00 43.07 4.11
4256 8488 3.262151 CCGAAATTTGGGGTAATTTGGGT 59.738 43.478 11.21 0.00 43.07 4.51
4257 8489 3.867857 CCGAAATTTGGGGTAATTTGGG 58.132 45.455 11.21 7.98 42.75 4.12
4258 8490 4.545208 ACCGAAATTTGGGGTAATTTGG 57.455 40.909 21.59 0.00 37.72 3.28
4259 8491 4.623595 CGAACCGAAATTTGGGGTAATTTG 59.376 41.667 21.59 8.27 37.72 2.32
4260 8492 4.322123 CCGAACCGAAATTTGGGGTAATTT 60.322 41.667 21.59 7.79 39.68 1.82
4261 8493 3.193903 CCGAACCGAAATTTGGGGTAATT 59.806 43.478 21.59 8.13 32.68 1.40
4262 8494 2.756207 CCGAACCGAAATTTGGGGTAAT 59.244 45.455 21.59 6.51 32.68 1.89
4263 8495 2.161030 CCGAACCGAAATTTGGGGTAA 58.839 47.619 21.59 0.00 32.68 2.85
4264 8496 1.613785 CCCGAACCGAAATTTGGGGTA 60.614 52.381 21.59 0.00 46.33 3.69
4265 8497 0.896479 CCCGAACCGAAATTTGGGGT 60.896 55.000 21.59 16.54 46.33 4.95
4266 8498 1.887301 CCCGAACCGAAATTTGGGG 59.113 57.895 21.59 12.69 46.33 4.96
4268 8500 4.417506 GAATTACCCGAACCGAAATTTGG 58.582 43.478 0.00 0.00 33.35 3.28
4269 8501 4.092816 CGAATTACCCGAACCGAAATTTG 58.907 43.478 0.00 0.00 0.00 2.32
4270 8502 3.127376 CCGAATTACCCGAACCGAAATTT 59.873 43.478 0.00 0.00 0.00 1.82
4271 8503 2.679336 CCGAATTACCCGAACCGAAATT 59.321 45.455 0.00 0.00 0.00 1.82
4272 8504 2.282407 CCGAATTACCCGAACCGAAAT 58.718 47.619 0.00 0.00 0.00 2.17
4273 8505 1.675415 CCCGAATTACCCGAACCGAAA 60.675 52.381 0.00 0.00 0.00 3.46
4274 8506 0.108233 CCCGAATTACCCGAACCGAA 60.108 55.000 0.00 0.00 0.00 4.30
4275 8507 1.257055 ACCCGAATTACCCGAACCGA 61.257 55.000 0.00 0.00 0.00 4.69
4276 8508 0.459489 TACCCGAATTACCCGAACCG 59.541 55.000 0.00 0.00 0.00 4.44
4277 8509 1.473257 GGTACCCGAATTACCCGAACC 60.473 57.143 0.00 0.00 33.98 3.62
4278 8510 1.939974 GGTACCCGAATTACCCGAAC 58.060 55.000 0.00 0.00 33.98 3.95
4293 8525 9.010029 TCTGAATATTTCTGTTTCTTTGGGTAC 57.990 33.333 0.00 0.00 0.00 3.34
4294 8526 9.231297 CTCTGAATATTTCTGTTTCTTTGGGTA 57.769 33.333 0.00 0.00 0.00 3.69
4295 8527 7.309438 GCTCTGAATATTTCTGTTTCTTTGGGT 60.309 37.037 0.00 0.00 0.00 4.51
4296 8528 7.031975 GCTCTGAATATTTCTGTTTCTTTGGG 58.968 38.462 0.00 0.00 0.00 4.12
4297 8529 7.540055 GTGCTCTGAATATTTCTGTTTCTTTGG 59.460 37.037 0.00 0.00 0.00 3.28
4298 8530 8.077991 TGTGCTCTGAATATTTCTGTTTCTTTG 58.922 33.333 0.00 0.00 0.00 2.77
4299 8531 8.078596 GTGTGCTCTGAATATTTCTGTTTCTTT 58.921 33.333 0.00 0.00 0.00 2.52
4300 8532 7.229306 TGTGTGCTCTGAATATTTCTGTTTCTT 59.771 33.333 0.00 0.00 0.00 2.52
4301 8533 6.712095 TGTGTGCTCTGAATATTTCTGTTTCT 59.288 34.615 0.00 0.00 0.00 2.52
4302 8534 6.902341 TGTGTGCTCTGAATATTTCTGTTTC 58.098 36.000 0.00 0.00 0.00 2.78
4303 8535 6.882610 TGTGTGCTCTGAATATTTCTGTTT 57.117 33.333 0.00 0.00 0.00 2.83
4304 8536 6.656270 TGATGTGTGCTCTGAATATTTCTGTT 59.344 34.615 0.00 0.00 0.00 3.16
4305 8537 6.175471 TGATGTGTGCTCTGAATATTTCTGT 58.825 36.000 0.00 0.00 0.00 3.41
4306 8538 6.673154 TGATGTGTGCTCTGAATATTTCTG 57.327 37.500 0.00 0.00 0.00 3.02
4307 8539 5.296283 GCTGATGTGTGCTCTGAATATTTCT 59.704 40.000 0.00 0.00 0.00 2.52
4308 8540 5.296283 AGCTGATGTGTGCTCTGAATATTTC 59.704 40.000 0.00 0.00 33.90 2.17
4309 8541 5.191426 AGCTGATGTGTGCTCTGAATATTT 58.809 37.500 0.00 0.00 33.90 1.40
4310 8542 4.778579 AGCTGATGTGTGCTCTGAATATT 58.221 39.130 0.00 0.00 33.90 1.28
4311 8543 4.418973 AGCTGATGTGTGCTCTGAATAT 57.581 40.909 0.00 0.00 33.90 1.28
4312 8544 3.900966 AGCTGATGTGTGCTCTGAATA 57.099 42.857 0.00 0.00 33.90 1.75
4313 8545 2.783609 AGCTGATGTGTGCTCTGAAT 57.216 45.000 0.00 0.00 33.90 2.57
4314 8546 2.556144 AAGCTGATGTGTGCTCTGAA 57.444 45.000 0.00 0.00 38.75 3.02
4315 8547 2.551032 CAAAAGCTGATGTGTGCTCTGA 59.449 45.455 0.00 0.00 38.75 3.27
4316 8548 2.351447 CCAAAAGCTGATGTGTGCTCTG 60.351 50.000 0.00 0.00 38.75 3.35
4317 8549 1.884579 CCAAAAGCTGATGTGTGCTCT 59.115 47.619 0.00 0.00 38.75 4.09
4318 8550 1.610522 ACCAAAAGCTGATGTGTGCTC 59.389 47.619 0.00 0.00 38.75 4.26
4319 8551 1.696063 ACCAAAAGCTGATGTGTGCT 58.304 45.000 0.00 0.00 41.82 4.40
4320 8552 3.191162 TCATACCAAAAGCTGATGTGTGC 59.809 43.478 0.00 0.00 0.00 4.57
4321 8553 5.375417 TTCATACCAAAAGCTGATGTGTG 57.625 39.130 0.00 0.00 0.00 3.82
4322 8554 7.701539 TTATTCATACCAAAAGCTGATGTGT 57.298 32.000 0.00 0.00 0.00 3.72
4323 8555 9.241317 GATTTATTCATACCAAAAGCTGATGTG 57.759 33.333 0.00 0.00 0.00 3.21
4324 8556 8.131100 CGATTTATTCATACCAAAAGCTGATGT 58.869 33.333 0.00 0.00 0.00 3.06
4325 8557 7.592533 CCGATTTATTCATACCAAAAGCTGATG 59.407 37.037 0.00 0.00 0.00 3.07
4326 8558 7.651808 CCGATTTATTCATACCAAAAGCTGAT 58.348 34.615 0.00 0.00 0.00 2.90
4327 8559 6.459573 GCCGATTTATTCATACCAAAAGCTGA 60.460 38.462 0.00 0.00 0.00 4.26
4328 8560 5.687285 GCCGATTTATTCATACCAAAAGCTG 59.313 40.000 0.00 0.00 0.00 4.24
4329 8561 5.594317 AGCCGATTTATTCATACCAAAAGCT 59.406 36.000 0.00 0.00 0.00 3.74
4330 8562 5.831997 AGCCGATTTATTCATACCAAAAGC 58.168 37.500 0.00 0.00 0.00 3.51
4331 8563 8.154649 ACTAGCCGATTTATTCATACCAAAAG 57.845 34.615 0.00 0.00 0.00 2.27
4332 8564 9.787435 ATACTAGCCGATTTATTCATACCAAAA 57.213 29.630 0.00 0.00 0.00 2.44
4333 8565 9.214957 CATACTAGCCGATTTATTCATACCAAA 57.785 33.333 0.00 0.00 0.00 3.28
4334 8566 7.822334 CCATACTAGCCGATTTATTCATACCAA 59.178 37.037 0.00 0.00 0.00 3.67
4335 8567 7.327975 CCATACTAGCCGATTTATTCATACCA 58.672 38.462 0.00 0.00 0.00 3.25
4336 8568 6.761714 CCCATACTAGCCGATTTATTCATACC 59.238 42.308 0.00 0.00 0.00 2.73
4337 8569 7.328737 ACCCATACTAGCCGATTTATTCATAC 58.671 38.462 0.00 0.00 0.00 2.39
4338 8570 7.490657 ACCCATACTAGCCGATTTATTCATA 57.509 36.000 0.00 0.00 0.00 2.15
4339 8571 6.374417 ACCCATACTAGCCGATTTATTCAT 57.626 37.500 0.00 0.00 0.00 2.57
4340 8572 5.818678 ACCCATACTAGCCGATTTATTCA 57.181 39.130 0.00 0.00 0.00 2.57
4341 8573 8.788325 AAATACCCATACTAGCCGATTTATTC 57.212 34.615 0.00 0.00 0.00 1.75
4343 8575 9.886132 CTAAAATACCCATACTAGCCGATTTAT 57.114 33.333 0.00 0.00 0.00 1.40
4344 8576 8.873144 ACTAAAATACCCATACTAGCCGATTTA 58.127 33.333 0.00 0.00 0.00 1.40
4345 8577 7.742767 ACTAAAATACCCATACTAGCCGATTT 58.257 34.615 0.00 0.00 0.00 2.17
4346 8578 7.312415 ACTAAAATACCCATACTAGCCGATT 57.688 36.000 0.00 0.00 0.00 3.34
4347 8579 6.930068 ACTAAAATACCCATACTAGCCGAT 57.070 37.500 0.00 0.00 0.00 4.18
4348 8580 6.736110 AACTAAAATACCCATACTAGCCGA 57.264 37.500 0.00 0.00 0.00 5.54
4349 8581 7.664758 ACTAACTAAAATACCCATACTAGCCG 58.335 38.462 0.00 0.00 0.00 5.52
4354 8586 9.456459 ACCCATACTAACTAAAATACCCATACT 57.544 33.333 0.00 0.00 0.00 2.12
4358 8590 9.055689 TGTTACCCATACTAACTAAAATACCCA 57.944 33.333 0.00 0.00 0.00 4.51
4364 8596 9.661563 CTGTCATGTTACCCATACTAACTAAAA 57.338 33.333 0.00 0.00 30.71 1.52
4365 8597 8.818860 ACTGTCATGTTACCCATACTAACTAAA 58.181 33.333 0.00 0.00 30.71 1.85
4366 8598 8.255206 CACTGTCATGTTACCCATACTAACTAA 58.745 37.037 0.00 0.00 30.71 2.24
4367 8599 7.398047 ACACTGTCATGTTACCCATACTAACTA 59.602 37.037 0.00 0.00 30.71 2.24
4368 8600 6.212791 ACACTGTCATGTTACCCATACTAACT 59.787 38.462 0.00 0.00 30.71 2.24
4369 8601 6.403878 ACACTGTCATGTTACCCATACTAAC 58.596 40.000 0.00 0.00 30.71 2.34
4370 8602 6.614694 ACACTGTCATGTTACCCATACTAA 57.385 37.500 0.00 0.00 30.71 2.24
4371 8603 7.721409 TTACACTGTCATGTTACCCATACTA 57.279 36.000 0.00 0.00 33.85 1.82
4372 8604 6.614694 TTACACTGTCATGTTACCCATACT 57.385 37.500 0.00 0.00 33.85 2.12
4373 8605 8.951787 TTATTACACTGTCATGTTACCCATAC 57.048 34.615 0.00 0.00 33.85 2.39
4375 8607 9.778741 CTATTATTACACTGTCATGTTACCCAT 57.221 33.333 0.00 0.00 33.85 4.00
4376 8608 7.713507 GCTATTATTACACTGTCATGTTACCCA 59.286 37.037 0.00 0.00 33.85 4.51
4377 8609 7.713507 TGCTATTATTACACTGTCATGTTACCC 59.286 37.037 0.00 0.00 33.85 3.69
4378 8610 8.657074 TGCTATTATTACACTGTCATGTTACC 57.343 34.615 0.00 0.00 33.85 2.85
4381 8613 8.962884 TCATGCTATTATTACACTGTCATGTT 57.037 30.769 0.00 0.00 33.85 2.71
4382 8614 8.962884 TTCATGCTATTATTACACTGTCATGT 57.037 30.769 0.00 0.00 36.56 3.21
4408 8640 9.793252 GACGACTAGTTCATACTAACCAAATTA 57.207 33.333 0.00 0.00 36.46 1.40
4409 8641 8.308931 TGACGACTAGTTCATACTAACCAAATT 58.691 33.333 0.00 0.00 36.46 1.82
4410 8642 7.833786 TGACGACTAGTTCATACTAACCAAAT 58.166 34.615 0.00 0.00 36.46 2.32
4411 8643 7.218228 TGACGACTAGTTCATACTAACCAAA 57.782 36.000 0.00 0.00 36.46 3.28
4412 8644 6.822667 TGACGACTAGTTCATACTAACCAA 57.177 37.500 0.00 0.00 36.46 3.67
4413 8645 6.349611 GGTTGACGACTAGTTCATACTAACCA 60.350 42.308 0.00 0.00 36.46 3.67
4414 8646 6.032717 GGTTGACGACTAGTTCATACTAACC 58.967 44.000 0.00 0.00 36.46 2.85
4415 8647 6.032717 GGGTTGACGACTAGTTCATACTAAC 58.967 44.000 0.00 0.00 36.46 2.34
4416 8648 5.163723 CGGGTTGACGACTAGTTCATACTAA 60.164 44.000 0.00 0.00 34.60 2.24
4417 8649 4.333649 CGGGTTGACGACTAGTTCATACTA 59.666 45.833 0.00 0.00 34.13 1.82
4418 8650 3.128242 CGGGTTGACGACTAGTTCATACT 59.872 47.826 0.00 0.00 35.65 2.12
4419 8651 3.119708 ACGGGTTGACGACTAGTTCATAC 60.120 47.826 0.00 0.00 37.61 2.39
4420 8652 3.084039 ACGGGTTGACGACTAGTTCATA 58.916 45.455 0.00 0.00 37.61 2.15
4421 8653 1.891150 ACGGGTTGACGACTAGTTCAT 59.109 47.619 0.00 0.00 37.61 2.57
4422 8654 1.001048 CACGGGTTGACGACTAGTTCA 60.001 52.381 0.00 0.00 37.61 3.18
4423 8655 1.694639 CACGGGTTGACGACTAGTTC 58.305 55.000 0.00 0.00 37.61 3.01
4424 8656 0.319297 GCACGGGTTGACGACTAGTT 60.319 55.000 0.00 0.00 37.61 2.24
4425 8657 1.288127 GCACGGGTTGACGACTAGT 59.712 57.895 0.00 0.00 37.61 2.57
4426 8658 1.007336 GTGCACGGGTTGACGACTAG 61.007 60.000 0.00 0.00 37.61 2.57
4427 8659 1.007038 GTGCACGGGTTGACGACTA 60.007 57.895 0.00 0.00 37.61 2.59
4428 8660 2.279918 GTGCACGGGTTGACGACT 60.280 61.111 0.00 0.00 37.61 4.18
4429 8661 3.343421 GGTGCACGGGTTGACGAC 61.343 66.667 11.45 0.00 37.61 4.34
4430 8662 3.542676 AGGTGCACGGGTTGACGA 61.543 61.111 11.45 0.00 37.61 4.20
4431 8663 3.345808 CAGGTGCACGGGTTGACG 61.346 66.667 11.45 0.00 40.31 4.35
4432 8664 3.660111 GCAGGTGCACGGGTTGAC 61.660 66.667 11.45 0.00 41.59 3.18
4445 8677 3.740128 AATCGCTAGCCCGTGCAGG 62.740 63.158 9.66 0.00 41.13 4.85
4446 8678 1.815421 AAATCGCTAGCCCGTGCAG 60.815 57.895 9.66 0.00 41.13 4.41
4447 8679 2.267642 AAATCGCTAGCCCGTGCA 59.732 55.556 9.66 0.00 41.13 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.