Multiple sequence alignment - TraesCS7D01G514500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G514500 chr7D 100.000 3059 0 0 1 3059 615470730 615467672 0.000000e+00 5650
1 TraesCS7D01G514500 chr7B 89.398 698 48 9 1598 2269 708089640 708088943 0.000000e+00 856
2 TraesCS7D01G514500 chr7B 90.860 558 42 5 1603 2151 713188325 713187768 0.000000e+00 739
3 TraesCS7D01G514500 chr7B 90.260 462 34 7 1700 2151 708003279 708002819 7.300000e-166 593
4 TraesCS7D01G514500 chr7B 92.152 395 24 7 304 692 708103957 708103564 4.460000e-153 551
5 TraesCS7D01G514500 chr7B 84.813 507 59 9 2570 3059 708002397 708001892 7.620000e-136 494
6 TraesCS7D01G514500 chr7B 86.341 410 35 6 2142 2534 708094193 708093788 7.840000e-116 427
7 TraesCS7D01G514500 chr7B 82.051 507 46 28 993 1488 713181863 713181391 1.030000e-104 390
8 TraesCS7D01G514500 chr7B 80.798 526 45 23 712 1205 708091630 708091129 8.060000e-96 361
9 TraesCS7D01G514500 chr7B 78.926 503 62 16 2343 2828 713187155 713186680 4.960000e-78 302
10 TraesCS7D01G514500 chr7B 91.534 189 9 6 1301 1484 708003478 708003292 1.410000e-63 254
11 TraesCS7D01G514500 chr7B 82.540 252 27 3 2179 2415 708002670 708002421 4.000000e-49 206
12 TraesCS7D01G514500 chr7B 84.211 190 14 10 1335 1524 708089921 708089748 1.460000e-38 171
13 TraesCS7D01G514500 chr7B 80.723 166 13 10 710 873 713182113 713181965 8.970000e-21 111
14 TraesCS7D01G514500 chr7A 90.000 600 46 10 1560 2151 708115711 708115118 0.000000e+00 763
15 TraesCS7D01G514500 chr7A 90.377 530 45 4 1560 2086 707978176 707977650 0.000000e+00 691
16 TraesCS7D01G514500 chr7A 94.444 324 18 0 1765 2088 707974764 707974441 1.640000e-137 499
17 TraesCS7D01G514500 chr7A 83.096 491 57 19 2329 2810 707974206 707973733 1.010000e-114 424
18 TraesCS7D01G514500 chr7A 92.308 260 11 4 939 1189 708116425 708116166 8.060000e-96 361
19 TraesCS7D01G514500 chr7A 86.624 314 28 7 1256 1569 707975546 707975247 4.890000e-88 335
20 TraesCS7D01G514500 chr7A 86.120 317 22 10 1261 1570 707979608 707979307 3.800000e-84 322
21 TraesCS7D01G514500 chr7A 89.956 229 13 3 1345 1570 708115970 708115749 1.390000e-73 287
22 TraesCS7D01G514500 chr7A 94.675 169 9 0 1015 1183 707975726 707975558 2.340000e-66 263
23 TraesCS7D01G514500 chr7A 93.333 120 6 1 1072 1189 707979736 707979617 3.130000e-40 176
24 TraesCS7D01G514500 chr7A 95.455 88 4 0 993 1080 707985620 707985533 1.140000e-29 141
25 TraesCS7D01G514500 chr1D 95.255 274 8 3 1 272 387956099 387956369 2.180000e-116 429
26 TraesCS7D01G514500 chr5B 94.891 274 10 3 1 272 6760736 6761007 2.820000e-115 425
27 TraesCS7D01G514500 chr3D 94.891 274 11 2 1 273 463074856 463075127 2.820000e-115 425
28 TraesCS7D01G514500 chr3D 94.872 273 10 3 1 272 101685628 101685359 1.010000e-114 424
29 TraesCS7D01G514500 chr6B 94.545 275 13 2 1 274 644699036 644699309 1.010000e-114 424
30 TraesCS7D01G514500 chr5D 94.585 277 10 4 1 274 111594825 111594551 1.010000e-114 424
31 TraesCS7D01G514500 chr5D 93.929 280 12 3 1 278 193125214 193125490 4.720000e-113 418
32 TraesCS7D01G514500 chr2D 94.872 273 6 5 1 272 367590045 367590310 1.310000e-113 420
33 TraesCS7D01G514500 chr1B 94.224 277 12 3 1 274 606179318 606179043 1.310000e-113 420


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G514500 chr7D 615467672 615470730 3058 True 5650.000000 5650 100.000000 1 3059 1 chr7D.!!$R1 3058
1 TraesCS7D01G514500 chr7B 713186680 713188325 1645 True 520.500000 739 84.893000 1603 2828 2 chr7B.!!$R5 1225
2 TraesCS7D01G514500 chr7B 708088943 708094193 5250 True 453.750000 856 85.187000 712 2534 4 chr7B.!!$R3 1822
3 TraesCS7D01G514500 chr7B 708001892 708003478 1586 True 386.750000 593 87.286750 1301 3059 4 chr7B.!!$R2 1758
4 TraesCS7D01G514500 chr7B 713181391 713182113 722 True 250.500000 390 81.387000 710 1488 2 chr7B.!!$R4 778
5 TraesCS7D01G514500 chr7A 708115118 708116425 1307 True 470.333333 763 90.754667 939 2151 3 chr7A.!!$R3 1212
6 TraesCS7D01G514500 chr7A 707973733 707979736 6003 True 387.142857 691 89.809857 1015 2810 7 chr7A.!!$R2 1795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.03759 TAACACTCACATGGGCCACC 59.962 55.0 9.28 0.0 37.24 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 9581 1.063972 CAAAGCACACACCACACCG 59.936 57.895 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.877779 AGATTTGATCTTTAGAGATTGTTCGTG 58.122 33.333 0.00 0.00 42.66 4.35
34 35 6.408858 TTGATCTTTAGAGATTGTTCGTGC 57.591 37.500 0.00 0.00 42.66 5.34
35 36 5.724328 TGATCTTTAGAGATTGTTCGTGCT 58.276 37.500 0.00 0.00 42.66 4.40
36 37 6.166279 TGATCTTTAGAGATTGTTCGTGCTT 58.834 36.000 0.00 0.00 42.66 3.91
37 38 5.845985 TCTTTAGAGATTGTTCGTGCTTG 57.154 39.130 0.00 0.00 0.00 4.01
38 39 5.538118 TCTTTAGAGATTGTTCGTGCTTGA 58.462 37.500 0.00 0.00 0.00 3.02
39 40 6.166279 TCTTTAGAGATTGTTCGTGCTTGAT 58.834 36.000 0.00 0.00 0.00 2.57
40 41 6.650807 TCTTTAGAGATTGTTCGTGCTTGATT 59.349 34.615 0.00 0.00 0.00 2.57
43 44 5.724328 AGAGATTGTTCGTGCTTGATTCTA 58.276 37.500 0.00 0.00 0.00 2.10
45 46 5.237815 AGATTGTTCGTGCTTGATTCTACA 58.762 37.500 0.00 0.00 0.00 2.74
46 47 5.877012 AGATTGTTCGTGCTTGATTCTACAT 59.123 36.000 0.00 0.00 0.00 2.29
48 49 7.549134 AGATTGTTCGTGCTTGATTCTACATTA 59.451 33.333 0.00 0.00 0.00 1.90
49 50 6.403333 TGTTCGTGCTTGATTCTACATTAC 57.597 37.500 0.00 0.00 0.00 1.89
50 51 6.163476 TGTTCGTGCTTGATTCTACATTACT 58.837 36.000 0.00 0.00 0.00 2.24
51 52 7.317390 TGTTCGTGCTTGATTCTACATTACTA 58.683 34.615 0.00 0.00 0.00 1.82
52 53 7.815549 TGTTCGTGCTTGATTCTACATTACTAA 59.184 33.333 0.00 0.00 0.00 2.24
53 54 8.653338 GTTCGTGCTTGATTCTACATTACTAAA 58.347 33.333 0.00 0.00 0.00 1.85
63 64 9.582223 GATTCTACATTACTAAATAACTTGCGC 57.418 33.333 0.00 0.00 0.00 6.09
64 65 7.473027 TCTACATTACTAAATAACTTGCGCC 57.527 36.000 4.18 0.00 0.00 6.53
65 66 7.042950 TCTACATTACTAAATAACTTGCGCCA 58.957 34.615 4.18 0.00 0.00 5.69
66 67 6.119144 ACATTACTAAATAACTTGCGCCAG 57.881 37.500 4.18 5.76 0.00 4.85
67 68 5.646360 ACATTACTAAATAACTTGCGCCAGT 59.354 36.000 8.58 8.58 0.00 4.00
70 71 5.734855 ACTAAATAACTTGCGCCAGTATG 57.265 39.130 15.26 4.59 0.00 2.39
88 89 7.301068 CAGTATGGAAAGTTCTGATCTGTTC 57.699 40.000 0.00 0.00 0.00 3.18
89 90 6.875726 CAGTATGGAAAGTTCTGATCTGTTCA 59.124 38.462 0.00 0.00 0.00 3.18
103 104 6.891624 TGATCTGTTCAGATTTCTTTCGTTG 58.108 36.000 15.16 0.00 0.00 4.10
105 106 6.048073 TCTGTTCAGATTTCTTTCGTTGTG 57.952 37.500 0.00 0.00 0.00 3.33
108 109 5.352846 TGTTCAGATTTCTTTCGTTGTGTGA 59.647 36.000 0.00 0.00 0.00 3.58
109 110 5.657470 TCAGATTTCTTTCGTTGTGTGAG 57.343 39.130 0.00 0.00 0.00 3.51
111 112 5.463392 TCAGATTTCTTTCGTTGTGTGAGAG 59.537 40.000 0.00 0.00 0.00 3.20
112 113 4.752101 AGATTTCTTTCGTTGTGTGAGAGG 59.248 41.667 0.00 0.00 0.00 3.69
113 114 2.526304 TCTTTCGTTGTGTGAGAGGG 57.474 50.000 0.00 0.00 0.00 4.30
116 117 1.116308 TTCGTTGTGTGAGAGGGTGA 58.884 50.000 0.00 0.00 0.00 4.02
118 119 0.104120 CGTTGTGTGAGAGGGTGACA 59.896 55.000 0.00 0.00 0.00 3.58
120 121 0.104120 TTGTGTGAGAGGGTGACACG 59.896 55.000 0.00 0.00 42.43 4.49
121 122 0.753848 TGTGTGAGAGGGTGACACGA 60.754 55.000 0.00 0.00 42.43 4.35
122 123 0.387929 GTGTGAGAGGGTGACACGAA 59.612 55.000 0.00 0.00 37.35 3.85
123 124 1.116308 TGTGAGAGGGTGACACGAAA 58.884 50.000 0.00 0.00 37.35 3.46
124 125 1.483004 TGTGAGAGGGTGACACGAAAA 59.517 47.619 0.00 0.00 37.35 2.29
125 126 2.104111 TGTGAGAGGGTGACACGAAAAT 59.896 45.455 0.00 0.00 37.35 1.82
126 127 3.322541 TGTGAGAGGGTGACACGAAAATA 59.677 43.478 0.00 0.00 37.35 1.40
127 128 4.202274 TGTGAGAGGGTGACACGAAAATAA 60.202 41.667 0.00 0.00 37.35 1.40
130 131 4.070009 AGAGGGTGACACGAAAATAAACC 58.930 43.478 0.00 0.00 0.00 3.27
131 132 2.809696 AGGGTGACACGAAAATAAACCG 59.190 45.455 0.00 0.00 0.00 4.44
132 133 2.807392 GGGTGACACGAAAATAAACCGA 59.193 45.455 0.00 0.00 0.00 4.69
133 134 3.437741 GGGTGACACGAAAATAAACCGAT 59.562 43.478 0.00 0.00 0.00 4.18
134 135 4.399978 GGTGACACGAAAATAAACCGATG 58.600 43.478 0.00 0.00 0.00 3.84
135 136 4.152759 GGTGACACGAAAATAAACCGATGA 59.847 41.667 0.00 0.00 0.00 2.92
136 137 5.334260 GGTGACACGAAAATAAACCGATGAA 60.334 40.000 0.00 0.00 0.00 2.57
138 139 5.467399 TGACACGAAAATAAACCGATGAAGT 59.533 36.000 0.00 0.00 0.00 3.01
139 140 5.685841 ACACGAAAATAAACCGATGAAGTG 58.314 37.500 0.00 0.00 0.00 3.16
140 141 5.086058 CACGAAAATAAACCGATGAAGTGG 58.914 41.667 0.00 0.00 0.00 4.00
141 142 4.155280 ACGAAAATAAACCGATGAAGTGGG 59.845 41.667 0.00 0.00 0.00 4.61
143 144 2.729028 ATAAACCGATGAAGTGGGGG 57.271 50.000 0.00 0.00 0.00 5.40
157 158 3.173323 GGGGGAGGGGACGAAAAA 58.827 61.111 0.00 0.00 0.00 1.94
191 192 2.685380 AGCGAAGGTGGGAGGAGG 60.685 66.667 0.00 0.00 36.17 4.30
194 195 1.957765 GCGAAGGTGGGAGGAGGTAC 61.958 65.000 0.00 0.00 0.00 3.34
195 196 0.613853 CGAAGGTGGGAGGAGGTACA 60.614 60.000 0.00 0.00 0.00 2.90
196 197 1.652947 GAAGGTGGGAGGAGGTACAA 58.347 55.000 0.00 0.00 0.00 2.41
197 198 1.982958 GAAGGTGGGAGGAGGTACAAA 59.017 52.381 0.00 0.00 0.00 2.83
198 199 2.127651 AGGTGGGAGGAGGTACAAAA 57.872 50.000 0.00 0.00 0.00 2.44
199 200 2.424793 AGGTGGGAGGAGGTACAAAAA 58.575 47.619 0.00 0.00 0.00 1.94
219 220 2.765689 AAAAACCATGTGAGGTGGGA 57.234 45.000 0.00 0.00 42.25 4.37
220 221 1.995376 AAAACCATGTGAGGTGGGAC 58.005 50.000 0.00 0.00 42.25 4.46
221 222 0.250727 AAACCATGTGAGGTGGGACG 60.251 55.000 0.00 0.00 42.25 4.79
222 223 1.125093 AACCATGTGAGGTGGGACGA 61.125 55.000 0.00 0.00 42.25 4.20
223 224 1.125093 ACCATGTGAGGTGGGACGAA 61.125 55.000 0.00 0.00 41.30 3.85
226 227 2.226330 CATGTGAGGTGGGACGAAAAA 58.774 47.619 0.00 0.00 0.00 1.94
242 243 2.930826 AAAAAGACCTGGAAGCGAGA 57.069 45.000 0.00 0.00 0.00 4.04
245 246 2.217510 AAGACCTGGAAGCGAGACTA 57.782 50.000 0.00 0.00 0.00 2.59
246 247 1.465794 AGACCTGGAAGCGAGACTAC 58.534 55.000 0.00 0.00 0.00 2.73
247 248 0.456628 GACCTGGAAGCGAGACTACC 59.543 60.000 0.00 0.00 0.00 3.18
249 250 0.895530 CCTGGAAGCGAGACTACCAA 59.104 55.000 0.00 0.00 0.00 3.67
252 253 1.272490 TGGAAGCGAGACTACCAACTG 59.728 52.381 0.00 0.00 0.00 3.16
253 254 1.351153 GAAGCGAGACTACCAACTGC 58.649 55.000 0.00 0.00 0.00 4.40
254 255 0.969894 AAGCGAGACTACCAACTGCT 59.030 50.000 0.00 0.00 0.00 4.24
255 256 0.528470 AGCGAGACTACCAACTGCTC 59.472 55.000 0.00 0.00 0.00 4.26
257 258 0.888619 CGAGACTACCAACTGCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
259 260 2.093973 CGAGACTACCAACTGCTCCATT 60.094 50.000 0.00 0.00 0.00 3.16
260 261 3.130516 CGAGACTACCAACTGCTCCATTA 59.869 47.826 0.00 0.00 0.00 1.90
261 262 4.688021 GAGACTACCAACTGCTCCATTAG 58.312 47.826 0.00 0.00 0.00 1.73
262 263 3.452627 AGACTACCAACTGCTCCATTAGG 59.547 47.826 0.00 0.00 0.00 2.69
265 266 4.475016 ACTACCAACTGCTCCATTAGGAAT 59.525 41.667 0.00 0.00 45.19 3.01
266 267 5.665812 ACTACCAACTGCTCCATTAGGAATA 59.334 40.000 0.00 0.00 45.19 1.75
267 268 5.041191 ACCAACTGCTCCATTAGGAATAG 57.959 43.478 0.00 0.00 45.19 1.73
268 269 4.721776 ACCAACTGCTCCATTAGGAATAGA 59.278 41.667 0.00 0.00 45.19 1.98
269 270 5.163258 ACCAACTGCTCCATTAGGAATAGAG 60.163 44.000 0.00 0.00 45.19 2.43
270 271 5.070981 CCAACTGCTCCATTAGGAATAGAGA 59.929 44.000 0.00 0.00 45.19 3.10
271 272 6.239829 CCAACTGCTCCATTAGGAATAGAGAT 60.240 42.308 0.00 0.00 45.19 2.75
272 273 7.038729 CCAACTGCTCCATTAGGAATAGAGATA 60.039 40.741 0.00 0.00 45.19 1.98
273 274 8.370940 CAACTGCTCCATTAGGAATAGAGATAA 58.629 37.037 0.00 0.00 45.19 1.75
274 275 7.902087 ACTGCTCCATTAGGAATAGAGATAAC 58.098 38.462 0.00 0.00 45.19 1.89
275 276 7.510685 ACTGCTCCATTAGGAATAGAGATAACA 59.489 37.037 0.00 0.00 45.19 2.41
276 277 7.671302 TGCTCCATTAGGAATAGAGATAACAC 58.329 38.462 0.00 0.00 45.19 3.32
278 279 8.032451 GCTCCATTAGGAATAGAGATAACACTC 58.968 40.741 0.00 0.00 45.19 3.51
280 281 8.861086 TCCATTAGGAATAGAGATAACACTCAC 58.139 37.037 0.00 0.00 42.23 3.51
281 282 8.642432 CCATTAGGAATAGAGATAACACTCACA 58.358 37.037 0.00 0.00 36.87 3.58
284 285 7.060383 AGGAATAGAGATAACACTCACATGG 57.940 40.000 0.00 0.00 39.14 3.66
285 286 6.042552 AGGAATAGAGATAACACTCACATGGG 59.957 42.308 0.00 0.00 39.14 4.00
286 287 3.550437 AGAGATAACACTCACATGGGC 57.450 47.619 0.00 0.00 39.14 5.36
287 288 2.171448 AGAGATAACACTCACATGGGCC 59.829 50.000 0.00 0.00 39.14 5.80
289 290 2.017049 GATAACACTCACATGGGCCAC 58.983 52.381 9.28 0.00 0.00 5.01
290 291 0.037590 TAACACTCACATGGGCCACC 59.962 55.000 9.28 0.00 37.24 4.61
291 292 2.361610 CACTCACATGGGCCACCC 60.362 66.667 9.28 0.00 45.71 4.61
303 304 4.785453 CCACCCCGCCAAGCTCTC 62.785 72.222 0.00 0.00 0.00 3.20
304 305 4.020617 CACCCCGCCAAGCTCTCA 62.021 66.667 0.00 0.00 0.00 3.27
305 306 4.021925 ACCCCGCCAAGCTCTCAC 62.022 66.667 0.00 0.00 0.00 3.51
306 307 3.710722 CCCCGCCAAGCTCTCACT 61.711 66.667 0.00 0.00 0.00 3.41
307 308 2.125350 CCCGCCAAGCTCTCACTC 60.125 66.667 0.00 0.00 0.00 3.51
308 309 2.507992 CCGCCAAGCTCTCACTCG 60.508 66.667 0.00 0.00 0.00 4.18
309 310 3.184683 CGCCAAGCTCTCACTCGC 61.185 66.667 0.00 0.00 0.00 5.03
310 311 2.047844 GCCAAGCTCTCACTCGCA 60.048 61.111 0.00 0.00 0.00 5.10
311 312 1.449246 GCCAAGCTCTCACTCGCAT 60.449 57.895 0.00 0.00 0.00 4.73
314 315 1.207390 CAAGCTCTCACTCGCATAGC 58.793 55.000 0.00 0.00 0.00 2.97
315 316 0.820226 AAGCTCTCACTCGCATAGCA 59.180 50.000 0.00 0.00 35.63 3.49
316 317 0.102120 AGCTCTCACTCGCATAGCAC 59.898 55.000 0.00 0.00 35.63 4.40
318 319 0.593518 CTCTCACTCGCATAGCACGG 60.594 60.000 0.00 0.00 0.00 4.94
319 320 1.139734 CTCACTCGCATAGCACGGT 59.860 57.895 0.00 0.00 0.00 4.83
320 321 0.458543 CTCACTCGCATAGCACGGTT 60.459 55.000 0.00 0.00 0.00 4.44
321 322 0.735978 TCACTCGCATAGCACGGTTG 60.736 55.000 0.00 0.00 0.00 3.77
343 344 2.511600 GCTCACCCGCGTTAGCAT 60.512 61.111 4.92 0.00 45.49 3.79
344 345 2.106683 GCTCACCCGCGTTAGCATT 61.107 57.895 4.92 0.00 45.49 3.56
345 346 1.644786 GCTCACCCGCGTTAGCATTT 61.645 55.000 4.92 0.00 45.49 2.32
347 348 1.199097 CTCACCCGCGTTAGCATTTTT 59.801 47.619 4.92 0.00 45.49 1.94
366 367 2.957402 TTTCCATTCACTCCACTGCT 57.043 45.000 0.00 0.00 0.00 4.24
367 368 4.365514 TTTTCCATTCACTCCACTGCTA 57.634 40.909 0.00 0.00 0.00 3.49
368 369 4.574674 TTTCCATTCACTCCACTGCTAT 57.425 40.909 0.00 0.00 0.00 2.97
369 370 3.827008 TCCATTCACTCCACTGCTATC 57.173 47.619 0.00 0.00 0.00 2.08
370 371 3.106827 TCCATTCACTCCACTGCTATCA 58.893 45.455 0.00 0.00 0.00 2.15
371 372 3.519107 TCCATTCACTCCACTGCTATCAA 59.481 43.478 0.00 0.00 0.00 2.57
372 373 4.019411 TCCATTCACTCCACTGCTATCAAA 60.019 41.667 0.00 0.00 0.00 2.69
373 374 4.885907 CCATTCACTCCACTGCTATCAAAT 59.114 41.667 0.00 0.00 0.00 2.32
375 376 6.543465 CCATTCACTCCACTGCTATCAAATAA 59.457 38.462 0.00 0.00 0.00 1.40
378 379 7.994425 TCACTCCACTGCTATCAAATAAAAA 57.006 32.000 0.00 0.00 0.00 1.94
428 429 8.970691 AAAGTCCATTAAATCAAAGACATTCG 57.029 30.769 0.00 0.00 0.00 3.34
429 430 7.088589 AGTCCATTAAATCAAAGACATTCGG 57.911 36.000 0.00 0.00 0.00 4.30
430 431 6.095440 AGTCCATTAAATCAAAGACATTCGGG 59.905 38.462 0.00 0.00 0.00 5.14
432 433 5.359576 CCATTAAATCAAAGACATTCGGGGA 59.640 40.000 0.00 0.00 0.00 4.81
433 434 6.040842 CCATTAAATCAAAGACATTCGGGGAT 59.959 38.462 0.00 0.00 0.00 3.85
434 435 7.417797 CCATTAAATCAAAGACATTCGGGGATT 60.418 37.037 0.00 0.00 0.00 3.01
435 436 7.475137 TTAAATCAAAGACATTCGGGGATTT 57.525 32.000 0.00 0.00 37.31 2.17
436 437 6.358974 AAATCAAAGACATTCGGGGATTTT 57.641 33.333 0.00 0.00 31.53 1.82
437 438 7.475137 AAATCAAAGACATTCGGGGATTTTA 57.525 32.000 0.00 0.00 31.53 1.52
438 439 7.660030 AATCAAAGACATTCGGGGATTTTAT 57.340 32.000 0.00 0.00 0.00 1.40
439 440 7.660030 ATCAAAGACATTCGGGGATTTTATT 57.340 32.000 0.00 0.00 0.00 1.40
440 441 8.760980 ATCAAAGACATTCGGGGATTTTATTA 57.239 30.769 0.00 0.00 0.00 0.98
441 442 8.582657 TCAAAGACATTCGGGGATTTTATTAA 57.417 30.769 0.00 0.00 0.00 1.40
442 443 9.026121 TCAAAGACATTCGGGGATTTTATTAAA 57.974 29.630 0.00 0.00 0.00 1.52
443 444 9.301153 CAAAGACATTCGGGGATTTTATTAAAG 57.699 33.333 0.00 0.00 0.00 1.85
444 445 7.039313 AGACATTCGGGGATTTTATTAAAGC 57.961 36.000 0.00 0.00 0.00 3.51
456 457 9.651913 GGATTTTATTAAAGCCATGAGTTGAAA 57.348 29.630 6.61 0.00 46.65 2.69
464 465 6.959639 AAGCCATGAGTTGAAAAACTAAGA 57.040 33.333 0.00 0.00 32.22 2.10
465 466 7.530426 AAGCCATGAGTTGAAAAACTAAGAT 57.470 32.000 0.00 0.00 32.22 2.40
466 467 7.530426 AGCCATGAGTTGAAAAACTAAGATT 57.470 32.000 0.00 0.00 32.22 2.40
467 468 7.955918 AGCCATGAGTTGAAAAACTAAGATTT 58.044 30.769 0.00 0.00 32.22 2.17
468 469 8.424133 AGCCATGAGTTGAAAAACTAAGATTTT 58.576 29.630 0.00 0.00 33.13 1.82
469 470 9.045223 GCCATGAGTTGAAAAACTAAGATTTTT 57.955 29.630 0.00 0.00 42.94 1.94
500 501 9.467258 AATGCTCACGATTAAAAATATTCATGG 57.533 29.630 0.00 0.00 0.00 3.66
501 502 8.219546 TGCTCACGATTAAAAATATTCATGGA 57.780 30.769 0.00 0.00 0.00 3.41
503 504 9.683069 GCTCACGATTAAAAATATTCATGGATT 57.317 29.630 0.00 0.00 0.00 3.01
516 517 6.897259 ATTCATGGATTTCATTTCTTTGCG 57.103 33.333 0.00 0.00 32.92 4.85
517 518 5.641783 TCATGGATTTCATTTCTTTGCGA 57.358 34.783 0.00 0.00 32.92 5.10
519 520 6.632909 TCATGGATTTCATTTCTTTGCGAAT 58.367 32.000 0.00 0.00 32.92 3.34
520 521 7.098477 TCATGGATTTCATTTCTTTGCGAATT 58.902 30.769 0.00 0.00 32.92 2.17
522 523 7.119605 TGGATTTCATTTCTTTGCGAATTTG 57.880 32.000 0.00 0.00 0.00 2.32
523 524 6.927936 TGGATTTCATTTCTTTGCGAATTTGA 59.072 30.769 0.00 0.00 0.00 2.69
524 525 7.440556 TGGATTTCATTTCTTTGCGAATTTGAA 59.559 29.630 0.00 0.00 34.75 2.69
525 526 8.281893 GGATTTCATTTCTTTGCGAATTTGAAA 58.718 29.630 12.22 12.22 42.22 2.69
526 527 9.649024 GATTTCATTTCTTTGCGAATTTGAAAA 57.351 25.926 13.16 0.00 41.82 2.29
528 529 9.488124 TTTCATTTCTTTGCGAATTTGAAAAAG 57.512 25.926 12.11 12.11 39.07 2.27
529 530 7.629130 TCATTTCTTTGCGAATTTGAAAAAGG 58.371 30.769 15.81 1.87 31.71 3.11
530 531 6.976636 TTTCTTTGCGAATTTGAAAAAGGT 57.023 29.167 15.81 0.00 0.00 3.50
532 533 6.582437 TCTTTGCGAATTTGAAAAAGGTTC 57.418 33.333 15.81 0.00 0.00 3.62
767 2620 8.673711 TCAATTATGTTTCTAATTCGGGAACTG 58.326 33.333 4.75 0.00 30.68 3.16
783 2636 6.488683 TCGGGAACTGTTTTTCTAATTCATGT 59.511 34.615 0.00 0.00 35.30 3.21
866 2719 0.320374 CCCGGTCTACTGCTCAACAA 59.680 55.000 0.00 0.00 0.00 2.83
870 2723 2.152016 GGTCTACTGCTCAACAAACCC 58.848 52.381 0.00 0.00 0.00 4.11
873 2726 0.250553 TACTGCTCAACAAACCCCCG 60.251 55.000 0.00 0.00 0.00 5.73
875 2728 1.515521 CTGCTCAACAAACCCCCGAC 61.516 60.000 0.00 0.00 0.00 4.79
876 2729 2.613506 GCTCAACAAACCCCCGACG 61.614 63.158 0.00 0.00 0.00 5.12
877 2730 1.070105 CTCAACAAACCCCCGACGA 59.930 57.895 0.00 0.00 0.00 4.20
878 2731 0.533308 CTCAACAAACCCCCGACGAA 60.533 55.000 0.00 0.00 0.00 3.85
879 2732 0.108963 TCAACAAACCCCCGACGAAT 59.891 50.000 0.00 0.00 0.00 3.34
880 2733 1.347050 TCAACAAACCCCCGACGAATA 59.653 47.619 0.00 0.00 0.00 1.75
881 2734 2.027007 TCAACAAACCCCCGACGAATAT 60.027 45.455 0.00 0.00 0.00 1.28
882 2735 2.032680 ACAAACCCCCGACGAATATG 57.967 50.000 0.00 0.00 0.00 1.78
883 2736 0.661020 CAAACCCCCGACGAATATGC 59.339 55.000 0.00 0.00 0.00 3.14
884 2737 0.253610 AAACCCCCGACGAATATGCA 59.746 50.000 0.00 0.00 0.00 3.96
885 2738 0.179056 AACCCCCGACGAATATGCAG 60.179 55.000 0.00 0.00 0.00 4.41
886 2739 1.961277 CCCCCGACGAATATGCAGC 60.961 63.158 0.00 0.00 0.00 5.25
887 2740 1.069765 CCCCGACGAATATGCAGCT 59.930 57.895 0.00 0.00 0.00 4.24
888 2741 0.317160 CCCCGACGAATATGCAGCTA 59.683 55.000 0.00 0.00 0.00 3.32
901 2754 7.493743 AATATGCAGCTAGACTTTTCAGATG 57.506 36.000 0.00 0.00 0.00 2.90
910 2763 1.906574 ACTTTTCAGATGGCCGGTCTA 59.093 47.619 7.97 0.00 0.00 2.59
911 2764 2.280628 CTTTTCAGATGGCCGGTCTAC 58.719 52.381 7.97 0.52 0.00 2.59
920 2773 1.019805 GGCCGGTCTACTGCTTGAAC 61.020 60.000 1.90 0.00 0.00 3.18
922 2775 1.997669 CCGGTCTACTGCTTGAACTC 58.002 55.000 0.00 0.00 0.00 3.01
970 2830 4.008933 GTCTGTCCAGCCGCCACT 62.009 66.667 0.00 0.00 0.00 4.00
984 2844 1.843992 GCCACTTTTGACTTGTGCAG 58.156 50.000 0.00 0.00 0.00 4.41
986 2846 2.357637 GCCACTTTTGACTTGTGCAGTA 59.642 45.455 0.00 0.00 35.01 2.74
987 2847 3.548818 GCCACTTTTGACTTGTGCAGTAG 60.549 47.826 0.00 0.00 35.01 2.57
988 2848 3.876914 CCACTTTTGACTTGTGCAGTAGA 59.123 43.478 2.18 0.00 35.01 2.59
989 2849 4.260784 CCACTTTTGACTTGTGCAGTAGAC 60.261 45.833 2.18 0.00 35.01 2.59
990 2850 3.877508 ACTTTTGACTTGTGCAGTAGACC 59.122 43.478 2.18 0.00 35.01 3.85
991 2851 3.838244 TTTGACTTGTGCAGTAGACCT 57.162 42.857 2.18 0.00 35.01 3.85
994 2872 0.687354 ACTTGTGCAGTAGACCTGGG 59.313 55.000 0.00 0.00 41.81 4.45
1017 2895 3.006728 ATGGGGACGGAGGCGAAA 61.007 61.111 0.00 0.00 0.00 3.46
1049 2927 4.899239 GCCGGCGAGATCCACCTG 62.899 72.222 12.58 0.00 0.00 4.00
1050 2928 4.899239 CCGGCGAGATCCACCTGC 62.899 72.222 9.30 0.00 0.00 4.85
1052 2930 4.148825 GGCGAGATCCACCTGCGT 62.149 66.667 0.00 0.00 0.00 5.24
1076 2954 4.269523 GGTGCTGGTGTGCCTGGA 62.270 66.667 0.00 0.00 34.67 3.86
1077 2955 2.203337 GTGCTGGTGTGCCTGGAA 60.203 61.111 0.00 0.00 35.98 3.53
1188 3076 3.249917 CGCTCACCTCTTCTTCTTCTTC 58.750 50.000 0.00 0.00 0.00 2.87
1240 3128 1.474478 TCAGTTCTTCTAGCAGCCGAG 59.526 52.381 0.00 0.00 0.00 4.63
1256 4292 1.739562 GAGTGCTTCCTGCCTCGTG 60.740 63.158 0.00 0.00 42.00 4.35
1271 4307 2.670414 CCTCGTGCTTTCACTGAGATTC 59.330 50.000 14.19 0.00 41.69 2.52
1323 4388 3.507233 CACCTTGCCTTGCTGAGATTTTA 59.493 43.478 0.00 0.00 0.00 1.52
1429 4596 2.089980 CTCTGTATTTGCCTTGCAGCT 58.910 47.619 0.00 0.00 40.61 4.24
1914 9430 3.790437 ATCAGCCTGGCGGACCTG 61.790 66.667 23.58 11.02 35.39 4.00
1991 9507 1.138036 CGTATCCGCGTGTGAAGGA 59.862 57.895 4.92 0.00 38.56 3.36
2028 9544 1.153901 GGATCGACCGAGCGTGAAA 60.154 57.895 1.54 0.00 0.00 2.69
2055 9571 0.829990 TGGAGCTTATGGATGCGTCA 59.170 50.000 8.47 0.00 0.00 4.35
2065 9581 1.739466 TGGATGCGTCATGAAAAGAGC 59.261 47.619 8.47 0.00 0.00 4.09
2089 9610 0.254462 TGGTGTGTGCTTTGTGGAGA 59.746 50.000 0.00 0.00 0.00 3.71
2090 9611 0.663153 GGTGTGTGCTTTGTGGAGAC 59.337 55.000 0.00 0.00 0.00 3.36
2091 9612 1.668419 GTGTGTGCTTTGTGGAGACT 58.332 50.000 0.00 0.00 31.67 3.24
2093 9614 3.403038 GTGTGTGCTTTGTGGAGACTAT 58.597 45.455 0.00 0.00 31.67 2.12
2129 9664 4.682860 GGTGCAGATGATTTGTCTTGTTTG 59.317 41.667 0.00 0.00 0.00 2.93
2196 10032 4.202245 CCTAGAGGGTTTCAATTCGACA 57.798 45.455 0.00 0.00 0.00 4.35
2220 10056 8.413229 ACATCAAAGTATACCCAATTTATGTGC 58.587 33.333 0.00 0.00 0.00 4.57
2269 10105 6.877236 ACTTTGTAATATTGGCCCATTTCAG 58.123 36.000 0.00 0.00 0.00 3.02
2337 10190 4.817318 TCCATTTAACTCCCCAAATTGC 57.183 40.909 0.00 0.00 0.00 3.56
2422 10464 6.099845 TGAGGAGTTAAGTCTCAAAAGGTTCT 59.900 38.462 10.10 0.00 34.97 3.01
2423 10465 6.901300 AGGAGTTAAGTCTCAAAAGGTTCTT 58.099 36.000 10.10 0.00 36.30 2.52
2491 10534 2.746362 CCAAGCTAGCTCTTCTTGTTGG 59.254 50.000 19.65 15.27 36.41 3.77
2498 10541 7.115414 AGCTAGCTCTTCTTGTTGGATAAAAT 58.885 34.615 12.68 0.00 0.00 1.82
2557 10600 3.813166 GCCGCTATAAATTCTTACCAGCA 59.187 43.478 0.00 0.00 31.94 4.41
2560 10603 4.213482 CGCTATAAATTCTTACCAGCACCC 59.787 45.833 0.00 0.00 31.94 4.61
2561 10604 4.519350 GCTATAAATTCTTACCAGCACCCC 59.481 45.833 0.00 0.00 32.40 4.95
2595 10638 1.026718 GTCTTCCTCATTGCCACCCG 61.027 60.000 0.00 0.00 0.00 5.28
2599 10642 0.178975 TCCTCATTGCCACCCGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
2626 10669 5.997746 CCAAAAGTTGTCAGAATCTGGACTA 59.002 40.000 10.71 2.23 31.51 2.59
2647 10722 2.093306 AATCACCGTCGCTTGATTCA 57.907 45.000 12.24 0.00 37.85 2.57
2739 10814 4.864334 GCTCCCCACCCATCGCTG 62.864 72.222 0.00 0.00 0.00 5.18
2756 10831 2.020694 GCTGTGCCTACTCATGCCAAT 61.021 52.381 0.00 0.00 0.00 3.16
2805 10880 0.537188 GAGGTCGCAATGAAGGAGGA 59.463 55.000 0.00 0.00 0.00 3.71
2828 10903 1.423794 GGAGGAACAACCCCACTCCA 61.424 60.000 0.00 0.00 45.45 3.86
2831 10906 1.150536 GAACAACCCCACTCCAGCA 59.849 57.895 0.00 0.00 0.00 4.41
2837 10912 0.251341 ACCCCACTCCAGCATCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
2839 10914 1.308069 CCCACTCCAGCATCAAACCG 61.308 60.000 0.00 0.00 0.00 4.44
2843 10918 1.361668 CTCCAGCATCAAACCGTCGG 61.362 60.000 10.48 10.48 0.00 4.79
2855 10930 1.038130 ACCGTCGGAGGAGAAGGATG 61.038 60.000 20.51 0.00 41.37 3.51
2862 10937 1.135960 GAGGAGAAGGATGAAGGGGG 58.864 60.000 0.00 0.00 0.00 5.40
2874 10949 0.692756 GAAGGGGGAGAGGAGGAAGG 60.693 65.000 0.00 0.00 0.00 3.46
2884 10959 0.252927 AGGAGGAAGGTGAGGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
2903 10978 1.900981 CAATCCCACACCGGCACAA 60.901 57.895 0.00 0.00 0.00 3.33
2924 10999 2.880443 AGGTGCAAAACATGATGTCCT 58.120 42.857 0.00 0.00 0.00 3.85
2952 11027 1.296715 CCAACCTTGGGAGGACGAG 59.703 63.158 0.00 0.00 46.74 4.18
2960 11035 3.827898 GGAGGACGAGGAGCACCG 61.828 72.222 0.00 0.00 41.83 4.94
2981 11056 4.363990 CACCGAGGTGCAGCTCGT 62.364 66.667 46.38 36.32 41.01 4.18
2983 11058 4.056125 CCGAGGTGCAGCTCGTCA 62.056 66.667 46.38 0.00 41.01 4.35
2984 11059 2.182791 CGAGGTGCAGCTCGTCAT 59.817 61.111 44.16 15.89 38.18 3.06
2985 11060 1.433471 CGAGGTGCAGCTCGTCATA 59.567 57.895 44.16 0.00 38.18 2.15
2992 11067 1.009078 GCAGCTCGTCATAATGCACA 58.991 50.000 0.00 0.00 36.88 4.57
2995 11070 2.097056 CAGCTCGTCATAATGCACATCG 60.097 50.000 0.00 0.00 0.00 3.84
2998 11073 3.115554 CTCGTCATAATGCACATCGACA 58.884 45.455 0.00 0.00 0.00 4.35
3003 11078 2.309528 TAATGCACATCGACACCCTC 57.690 50.000 0.00 0.00 0.00 4.30
3006 11081 1.296715 GCACATCGACACCCTCCTT 59.703 57.895 0.00 0.00 0.00 3.36
3014 11089 0.903236 GACACCCTCCTTACTGACCC 59.097 60.000 0.00 0.00 0.00 4.46
3045 11120 4.436998 GAGGACCGCACCACCGAG 62.437 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.877779 CACGAACAATCTCTAAAGATCAAATCT 58.122 33.333 0.00 0.00 41.54 2.40
10 11 6.650807 AGCACGAACAATCTCTAAAGATCAAA 59.349 34.615 0.00 0.00 41.54 2.69
11 12 6.166279 AGCACGAACAATCTCTAAAGATCAA 58.834 36.000 0.00 0.00 41.54 2.57
12 13 5.724328 AGCACGAACAATCTCTAAAGATCA 58.276 37.500 0.00 0.00 41.54 2.92
13 14 6.311445 TCAAGCACGAACAATCTCTAAAGATC 59.689 38.462 0.00 0.00 41.54 2.75
15 16 5.538118 TCAAGCACGAACAATCTCTAAAGA 58.462 37.500 0.00 0.00 35.54 2.52
16 17 5.845985 TCAAGCACGAACAATCTCTAAAG 57.154 39.130 0.00 0.00 0.00 1.85
19 20 5.724328 AGAATCAAGCACGAACAATCTCTA 58.276 37.500 0.00 0.00 0.00 2.43
21 22 4.935885 AGAATCAAGCACGAACAATCTC 57.064 40.909 0.00 0.00 0.00 2.75
22 23 5.237815 TGTAGAATCAAGCACGAACAATCT 58.762 37.500 0.00 0.00 0.00 2.40
23 24 5.530519 TGTAGAATCAAGCACGAACAATC 57.469 39.130 0.00 0.00 0.00 2.67
25 26 5.940192 AATGTAGAATCAAGCACGAACAA 57.060 34.783 0.00 0.00 0.00 2.83
26 27 6.163476 AGTAATGTAGAATCAAGCACGAACA 58.837 36.000 0.00 0.00 0.00 3.18
27 28 6.648725 AGTAATGTAGAATCAAGCACGAAC 57.351 37.500 0.00 0.00 0.00 3.95
28 29 8.766000 TTTAGTAATGTAGAATCAAGCACGAA 57.234 30.769 0.00 0.00 0.00 3.85
29 30 8.942338 ATTTAGTAATGTAGAATCAAGCACGA 57.058 30.769 0.00 0.00 0.00 4.35
37 38 9.582223 GCGCAAGTTATTTAGTAATGTAGAATC 57.418 33.333 0.30 0.00 41.68 2.52
38 39 8.557029 GGCGCAAGTTATTTAGTAATGTAGAAT 58.443 33.333 10.83 0.00 41.68 2.40
39 40 7.549842 TGGCGCAAGTTATTTAGTAATGTAGAA 59.450 33.333 10.83 0.00 41.68 2.10
40 41 7.042950 TGGCGCAAGTTATTTAGTAATGTAGA 58.957 34.615 10.83 0.00 41.68 2.59
43 44 5.646360 ACTGGCGCAAGTTATTTAGTAATGT 59.354 36.000 12.94 0.00 41.68 2.71
45 46 7.041372 CCATACTGGCGCAAGTTATTTAGTAAT 60.041 37.037 25.12 3.77 41.68 1.89
46 47 6.259167 CCATACTGGCGCAAGTTATTTAGTAA 59.741 38.462 25.12 0.97 41.68 2.24
48 49 4.574828 CCATACTGGCGCAAGTTATTTAGT 59.425 41.667 25.12 7.62 41.68 2.24
49 50 4.814234 TCCATACTGGCGCAAGTTATTTAG 59.186 41.667 25.12 6.74 37.47 1.85
50 51 4.771903 TCCATACTGGCGCAAGTTATTTA 58.228 39.130 25.12 4.46 37.47 1.40
51 52 3.616219 TCCATACTGGCGCAAGTTATTT 58.384 40.909 25.12 3.03 37.47 1.40
52 53 3.275617 TCCATACTGGCGCAAGTTATT 57.724 42.857 25.12 5.79 37.47 1.40
53 54 3.275617 TTCCATACTGGCGCAAGTTAT 57.724 42.857 25.12 11.57 37.47 1.89
55 56 1.812571 CTTTCCATACTGGCGCAAGTT 59.187 47.619 25.12 8.30 37.47 2.66
57 58 1.453155 ACTTTCCATACTGGCGCAAG 58.547 50.000 11.17 11.17 37.47 4.01
58 59 1.810151 GAACTTTCCATACTGGCGCAA 59.190 47.619 10.83 0.00 37.47 4.85
59 60 1.003118 AGAACTTTCCATACTGGCGCA 59.997 47.619 10.83 0.00 37.47 6.09
60 61 1.398390 CAGAACTTTCCATACTGGCGC 59.602 52.381 0.00 0.00 37.47 6.53
61 62 2.972625 TCAGAACTTTCCATACTGGCG 58.027 47.619 0.00 0.00 37.47 5.69
62 63 4.574013 CAGATCAGAACTTTCCATACTGGC 59.426 45.833 0.00 0.00 37.47 4.85
63 64 5.738909 ACAGATCAGAACTTTCCATACTGG 58.261 41.667 0.00 0.00 39.43 4.00
64 65 6.875726 TGAACAGATCAGAACTTTCCATACTG 59.124 38.462 0.00 0.00 33.04 2.74
65 66 7.009179 TGAACAGATCAGAACTTTCCATACT 57.991 36.000 0.00 0.00 33.04 2.12
79 80 6.483307 ACAACGAAAGAAATCTGAACAGATCA 59.517 34.615 16.12 0.00 46.75 2.92
80 81 6.794158 CACAACGAAAGAAATCTGAACAGATC 59.206 38.462 16.12 7.39 46.75 2.75
82 83 5.584649 ACACAACGAAAGAAATCTGAACAGA 59.415 36.000 6.98 6.98 42.37 3.41
83 84 5.678483 CACACAACGAAAGAAATCTGAACAG 59.322 40.000 0.00 0.00 0.00 3.16
84 85 5.352846 TCACACAACGAAAGAAATCTGAACA 59.647 36.000 0.00 0.00 0.00 3.18
85 86 5.806286 TCACACAACGAAAGAAATCTGAAC 58.194 37.500 0.00 0.00 0.00 3.18
87 88 5.356426 TCTCACACAACGAAAGAAATCTGA 58.644 37.500 0.00 0.00 0.00 3.27
88 89 5.333645 CCTCTCACACAACGAAAGAAATCTG 60.334 44.000 0.00 0.00 0.00 2.90
89 90 4.752101 CCTCTCACACAACGAAAGAAATCT 59.248 41.667 0.00 0.00 0.00 2.40
90 91 4.083802 CCCTCTCACACAACGAAAGAAATC 60.084 45.833 0.00 0.00 0.00 2.17
92 93 3.202906 CCCTCTCACACAACGAAAGAAA 58.797 45.455 0.00 0.00 0.00 2.52
95 96 1.867233 CACCCTCTCACACAACGAAAG 59.133 52.381 0.00 0.00 0.00 2.62
96 97 1.483004 TCACCCTCTCACACAACGAAA 59.517 47.619 0.00 0.00 0.00 3.46
97 98 1.116308 TCACCCTCTCACACAACGAA 58.884 50.000 0.00 0.00 0.00 3.85
98 99 0.387929 GTCACCCTCTCACACAACGA 59.612 55.000 0.00 0.00 0.00 3.85
100 101 1.583054 GTGTCACCCTCTCACACAAC 58.417 55.000 0.00 0.00 40.22 3.32
101 102 0.104120 CGTGTCACCCTCTCACACAA 59.896 55.000 0.00 0.00 40.46 3.33
102 103 0.753848 TCGTGTCACCCTCTCACACA 60.754 55.000 0.00 0.00 40.46 3.72
103 104 0.387929 TTCGTGTCACCCTCTCACAC 59.612 55.000 0.00 0.00 37.63 3.82
105 106 2.234300 TTTTCGTGTCACCCTCTCAC 57.766 50.000 0.00 0.00 0.00 3.51
108 109 4.070009 GGTTTATTTTCGTGTCACCCTCT 58.930 43.478 0.00 0.00 0.00 3.69
109 110 3.120442 CGGTTTATTTTCGTGTCACCCTC 60.120 47.826 0.00 0.00 0.00 4.30
111 112 2.807392 TCGGTTTATTTTCGTGTCACCC 59.193 45.455 0.00 0.00 0.00 4.61
112 113 4.152759 TCATCGGTTTATTTTCGTGTCACC 59.847 41.667 0.00 0.00 0.00 4.02
113 114 5.272167 TCATCGGTTTATTTTCGTGTCAC 57.728 39.130 0.00 0.00 0.00 3.67
116 117 5.334569 CCACTTCATCGGTTTATTTTCGTGT 60.335 40.000 0.00 0.00 0.00 4.49
118 119 4.155280 CCCACTTCATCGGTTTATTTTCGT 59.845 41.667 0.00 0.00 0.00 3.85
120 121 4.142249 CCCCCACTTCATCGGTTTATTTTC 60.142 45.833 0.00 0.00 0.00 2.29
121 122 3.767131 CCCCCACTTCATCGGTTTATTTT 59.233 43.478 0.00 0.00 0.00 1.82
122 123 3.361786 CCCCCACTTCATCGGTTTATTT 58.638 45.455 0.00 0.00 0.00 1.40
123 124 3.012934 CCCCCACTTCATCGGTTTATT 57.987 47.619 0.00 0.00 0.00 1.40
124 125 2.729028 CCCCCACTTCATCGGTTTAT 57.271 50.000 0.00 0.00 0.00 1.40
140 141 3.173323 TTTTTCGTCCCCTCCCCC 58.827 61.111 0.00 0.00 0.00 5.40
167 168 0.106419 TCCCACCTTCGCTGGTTTTT 60.106 50.000 0.00 0.00 38.45 1.94
168 169 0.537371 CTCCCACCTTCGCTGGTTTT 60.537 55.000 0.00 0.00 38.45 2.43
169 170 1.073199 CTCCCACCTTCGCTGGTTT 59.927 57.895 0.00 0.00 38.45 3.27
175 176 1.684734 TACCTCCTCCCACCTTCGC 60.685 63.158 0.00 0.00 0.00 4.70
176 177 0.613853 TGTACCTCCTCCCACCTTCG 60.614 60.000 0.00 0.00 0.00 3.79
177 178 1.652947 TTGTACCTCCTCCCACCTTC 58.347 55.000 0.00 0.00 0.00 3.46
178 179 2.127651 TTTGTACCTCCTCCCACCTT 57.872 50.000 0.00 0.00 0.00 3.50
179 180 2.127651 TTTTGTACCTCCTCCCACCT 57.872 50.000 0.00 0.00 0.00 4.00
180 181 2.963599 TTTTTGTACCTCCTCCCACC 57.036 50.000 0.00 0.00 0.00 4.61
200 201 2.316108 GTCCCACCTCACATGGTTTTT 58.684 47.619 0.00 0.00 38.45 1.94
204 205 1.125093 TTCGTCCCACCTCACATGGT 61.125 55.000 0.00 0.00 41.77 3.55
205 206 0.036164 TTTCGTCCCACCTCACATGG 59.964 55.000 0.00 0.00 36.94 3.66
206 207 1.890876 TTTTCGTCCCACCTCACATG 58.109 50.000 0.00 0.00 0.00 3.21
207 208 2.649531 TTTTTCGTCCCACCTCACAT 57.350 45.000 0.00 0.00 0.00 3.21
223 224 2.104963 AGTCTCGCTTCCAGGTCTTTTT 59.895 45.455 0.00 0.00 0.00 1.94
226 227 1.819903 GTAGTCTCGCTTCCAGGTCTT 59.180 52.381 0.00 0.00 0.00 3.01
227 228 1.465794 GTAGTCTCGCTTCCAGGTCT 58.534 55.000 0.00 0.00 0.00 3.85
228 229 0.456628 GGTAGTCTCGCTTCCAGGTC 59.543 60.000 0.00 0.00 35.06 3.85
230 231 0.895530 TTGGTAGTCTCGCTTCCAGG 59.104 55.000 0.00 0.00 43.94 4.45
232 233 1.272490 CAGTTGGTAGTCTCGCTTCCA 59.728 52.381 0.00 0.00 41.97 3.53
233 234 1.997669 CAGTTGGTAGTCTCGCTTCC 58.002 55.000 0.00 0.00 35.47 3.46
234 235 1.067495 AGCAGTTGGTAGTCTCGCTTC 60.067 52.381 0.00 0.00 0.00 3.86
236 237 0.528470 GAGCAGTTGGTAGTCTCGCT 59.472 55.000 0.00 0.00 0.00 4.93
237 238 0.458716 GGAGCAGTTGGTAGTCTCGC 60.459 60.000 0.00 0.00 0.00 5.03
238 239 0.888619 TGGAGCAGTTGGTAGTCTCG 59.111 55.000 0.00 0.00 0.00 4.04
239 240 3.618690 AATGGAGCAGTTGGTAGTCTC 57.381 47.619 0.00 0.00 0.00 3.36
242 243 3.450904 TCCTAATGGAGCAGTTGGTAGT 58.549 45.455 0.00 0.00 37.46 2.73
245 246 4.721776 TCTATTCCTAATGGAGCAGTTGGT 59.278 41.667 0.00 0.00 44.24 3.67
246 247 5.070981 TCTCTATTCCTAATGGAGCAGTTGG 59.929 44.000 7.84 0.00 43.74 3.77
247 248 6.166984 TCTCTATTCCTAATGGAGCAGTTG 57.833 41.667 7.84 0.00 43.74 3.16
249 250 7.510685 TGTTATCTCTATTCCTAATGGAGCAGT 59.489 37.037 7.84 1.45 43.74 4.40
252 253 7.902087 AGTGTTATCTCTATTCCTAATGGAGC 58.098 38.462 7.84 0.00 43.74 4.70
253 254 9.083422 TGAGTGTTATCTCTATTCCTAATGGAG 57.917 37.037 6.66 6.66 44.97 3.86
254 255 8.861086 GTGAGTGTTATCTCTATTCCTAATGGA 58.139 37.037 0.00 0.00 36.68 3.41
255 256 8.642432 TGTGAGTGTTATCTCTATTCCTAATGG 58.358 37.037 0.00 0.00 35.68 3.16
259 260 7.233553 CCCATGTGAGTGTTATCTCTATTCCTA 59.766 40.741 0.00 0.00 35.68 2.94
260 261 6.042552 CCCATGTGAGTGTTATCTCTATTCCT 59.957 42.308 0.00 0.00 35.68 3.36
261 262 6.226787 CCCATGTGAGTGTTATCTCTATTCC 58.773 44.000 0.00 0.00 35.68 3.01
262 263 5.698545 GCCCATGTGAGTGTTATCTCTATTC 59.301 44.000 0.00 0.00 35.68 1.75
265 266 3.388024 GGCCCATGTGAGTGTTATCTCTA 59.612 47.826 0.00 0.00 35.68 2.43
266 267 2.171448 GGCCCATGTGAGTGTTATCTCT 59.829 50.000 0.00 0.00 35.68 3.10
267 268 2.092968 TGGCCCATGTGAGTGTTATCTC 60.093 50.000 0.00 0.00 35.28 2.75
268 269 1.915489 TGGCCCATGTGAGTGTTATCT 59.085 47.619 0.00 0.00 0.00 1.98
269 270 2.017049 GTGGCCCATGTGAGTGTTATC 58.983 52.381 0.00 0.00 0.00 1.75
270 271 1.340991 GGTGGCCCATGTGAGTGTTAT 60.341 52.381 0.00 0.00 0.00 1.89
271 272 0.037590 GGTGGCCCATGTGAGTGTTA 59.962 55.000 0.00 0.00 0.00 2.41
272 273 1.228552 GGTGGCCCATGTGAGTGTT 60.229 57.895 0.00 0.00 0.00 3.32
273 274 2.436109 GGTGGCCCATGTGAGTGT 59.564 61.111 0.00 0.00 0.00 3.55
274 275 2.361610 GGGTGGCCCATGTGAGTG 60.362 66.667 0.00 0.00 44.65 3.51
286 287 4.785453 GAGAGCTTGGCGGGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
287 288 4.020617 TGAGAGCTTGGCGGGGTG 62.021 66.667 0.00 0.00 0.00 4.61
289 290 3.672295 GAGTGAGAGCTTGGCGGGG 62.672 68.421 0.00 0.00 0.00 5.73
290 291 2.125350 GAGTGAGAGCTTGGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
291 292 2.507992 CGAGTGAGAGCTTGGCGG 60.508 66.667 0.00 0.00 0.00 6.13
292 293 3.184683 GCGAGTGAGAGCTTGGCG 61.185 66.667 0.00 0.00 0.00 5.69
293 294 0.179100 TATGCGAGTGAGAGCTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
294 295 1.850377 CTATGCGAGTGAGAGCTTGG 58.150 55.000 0.00 0.00 0.00 3.61
295 296 1.207390 GCTATGCGAGTGAGAGCTTG 58.793 55.000 0.00 0.00 0.00 4.01
296 297 0.820226 TGCTATGCGAGTGAGAGCTT 59.180 50.000 0.00 0.00 34.19 3.74
297 298 0.102120 GTGCTATGCGAGTGAGAGCT 59.898 55.000 0.00 0.00 34.19 4.09
298 299 1.205485 CGTGCTATGCGAGTGAGAGC 61.205 60.000 0.00 0.00 0.00 4.09
299 300 0.593518 CCGTGCTATGCGAGTGAGAG 60.594 60.000 0.00 0.00 0.00 3.20
300 301 1.313091 ACCGTGCTATGCGAGTGAGA 61.313 55.000 0.00 0.00 0.00 3.27
301 302 0.458543 AACCGTGCTATGCGAGTGAG 60.459 55.000 0.00 0.00 0.00 3.51
302 303 0.735978 CAACCGTGCTATGCGAGTGA 60.736 55.000 0.00 0.00 0.00 3.41
303 304 1.709760 CAACCGTGCTATGCGAGTG 59.290 57.895 0.00 0.00 0.00 3.51
304 305 4.185413 CAACCGTGCTATGCGAGT 57.815 55.556 0.00 0.00 0.00 4.18
327 328 0.802494 AAAATGCTAACGCGGGTGAG 59.198 50.000 12.47 12.62 39.65 3.51
345 346 3.565307 AGCAGTGGAGTGAATGGAAAAA 58.435 40.909 0.00 0.00 0.00 1.94
347 348 2.957402 AGCAGTGGAGTGAATGGAAA 57.043 45.000 0.00 0.00 0.00 3.13
348 349 3.519107 TGATAGCAGTGGAGTGAATGGAA 59.481 43.478 0.00 0.00 0.00 3.53
349 350 3.106827 TGATAGCAGTGGAGTGAATGGA 58.893 45.455 0.00 0.00 0.00 3.41
350 351 3.548745 TGATAGCAGTGGAGTGAATGG 57.451 47.619 0.00 0.00 0.00 3.16
352 353 8.579850 TTTTATTTGATAGCAGTGGAGTGAAT 57.420 30.769 0.00 0.00 0.00 2.57
354 355 7.994425 TTTTTATTTGATAGCAGTGGAGTGA 57.006 32.000 0.00 0.00 0.00 3.41
403 404 8.028938 CCGAATGTCTTTGATTTAATGGACTTT 58.971 33.333 0.00 0.00 0.00 2.66
404 405 7.362920 CCCGAATGTCTTTGATTTAATGGACTT 60.363 37.037 0.00 0.00 0.00 3.01
405 406 6.095440 CCCGAATGTCTTTGATTTAATGGACT 59.905 38.462 0.00 0.00 0.00 3.85
406 407 6.265577 CCCGAATGTCTTTGATTTAATGGAC 58.734 40.000 0.00 0.00 0.00 4.02
408 409 5.359576 TCCCCGAATGTCTTTGATTTAATGG 59.640 40.000 0.00 0.00 0.00 3.16
409 410 6.449635 TCCCCGAATGTCTTTGATTTAATG 57.550 37.500 0.00 0.00 0.00 1.90
410 411 7.660030 AATCCCCGAATGTCTTTGATTTAAT 57.340 32.000 0.00 0.00 0.00 1.40
411 412 7.475137 AAATCCCCGAATGTCTTTGATTTAA 57.525 32.000 0.00 0.00 31.30 1.52
413 414 6.358974 AAAATCCCCGAATGTCTTTGATTT 57.641 33.333 0.00 0.00 33.67 2.17
415 416 7.660030 AATAAAATCCCCGAATGTCTTTGAT 57.340 32.000 0.00 0.00 0.00 2.57
417 418 9.301153 CTTTAATAAAATCCCCGAATGTCTTTG 57.699 33.333 0.00 0.00 0.00 2.77
418 419 7.979537 GCTTTAATAAAATCCCCGAATGTCTTT 59.020 33.333 0.00 0.00 0.00 2.52
419 420 7.417456 GGCTTTAATAAAATCCCCGAATGTCTT 60.417 37.037 0.00 0.00 0.00 3.01
420 421 6.040504 GGCTTTAATAAAATCCCCGAATGTCT 59.959 38.462 0.00 0.00 0.00 3.41
421 422 6.183360 TGGCTTTAATAAAATCCCCGAATGTC 60.183 38.462 0.00 0.00 31.11 3.06
423 424 6.155475 TGGCTTTAATAAAATCCCCGAATG 57.845 37.500 0.00 0.00 31.11 2.67
424 425 6.553100 TCATGGCTTTAATAAAATCCCCGAAT 59.447 34.615 0.00 0.00 31.11 3.34
428 429 6.731292 ACTCATGGCTTTAATAAAATCCCC 57.269 37.500 0.00 0.00 31.11 4.81
429 430 7.781056 TCAACTCATGGCTTTAATAAAATCCC 58.219 34.615 0.00 0.00 31.11 3.85
430 431 9.651913 TTTCAACTCATGGCTTTAATAAAATCC 57.348 29.630 0.00 0.00 32.51 3.01
437 438 9.696917 CTTAGTTTTTCAACTCATGGCTTTAAT 57.303 29.630 0.00 0.00 42.66 1.40
438 439 8.908903 TCTTAGTTTTTCAACTCATGGCTTTAA 58.091 29.630 0.00 0.00 42.66 1.52
439 440 8.458573 TCTTAGTTTTTCAACTCATGGCTTTA 57.541 30.769 0.00 0.00 42.66 1.85
440 441 7.346751 TCTTAGTTTTTCAACTCATGGCTTT 57.653 32.000 0.00 0.00 42.66 3.51
441 442 6.959639 TCTTAGTTTTTCAACTCATGGCTT 57.040 33.333 0.00 0.00 42.66 4.35
442 443 7.530426 AATCTTAGTTTTTCAACTCATGGCT 57.470 32.000 0.00 0.00 42.66 4.75
443 444 8.593492 AAAATCTTAGTTTTTCAACTCATGGC 57.407 30.769 0.00 0.00 42.66 4.40
475 476 8.849168 TCCATGAATATTTTTAATCGTGAGCAT 58.151 29.630 0.00 0.00 31.90 3.79
476 477 8.219546 TCCATGAATATTTTTAATCGTGAGCA 57.780 30.769 0.00 0.00 31.90 4.26
477 478 9.683069 AATCCATGAATATTTTTAATCGTGAGC 57.317 29.630 0.00 0.00 31.90 4.26
490 491 9.037737 CGCAAAGAAATGAAATCCATGAATATT 57.962 29.630 0.00 0.00 35.24 1.28
493 494 6.632909 TCGCAAAGAAATGAAATCCATGAAT 58.367 32.000 0.00 0.00 35.24 2.57
494 495 6.023357 TCGCAAAGAAATGAAATCCATGAA 57.977 33.333 0.00 0.00 35.24 2.57
495 496 5.641783 TCGCAAAGAAATGAAATCCATGA 57.358 34.783 0.00 0.00 35.24 3.07
498 499 6.927936 TCAAATTCGCAAAGAAATGAAATCCA 59.072 30.769 0.00 0.00 42.91 3.41
499 500 7.350110 TCAAATTCGCAAAGAAATGAAATCC 57.650 32.000 0.00 0.00 42.91 3.01
500 501 9.649024 TTTTCAAATTCGCAAAGAAATGAAATC 57.351 25.926 17.55 0.00 46.26 2.17
503 504 8.121708 CCTTTTTCAAATTCGCAAAGAAATGAA 58.878 29.630 7.76 7.76 42.91 2.57
504 505 7.279758 ACCTTTTTCAAATTCGCAAAGAAATGA 59.720 29.630 0.00 0.00 42.91 2.57
505 506 7.408910 ACCTTTTTCAAATTCGCAAAGAAATG 58.591 30.769 0.00 0.00 42.91 2.32
507 508 6.976636 ACCTTTTTCAAATTCGCAAAGAAA 57.023 29.167 0.00 0.00 42.91 2.52
508 509 6.591834 TGAACCTTTTTCAAATTCGCAAAGAA 59.408 30.769 0.00 0.00 43.93 2.52
509 510 6.102663 TGAACCTTTTTCAAATTCGCAAAGA 58.897 32.000 0.00 0.00 0.00 2.52
510 511 6.343226 TGAACCTTTTTCAAATTCGCAAAG 57.657 33.333 0.00 0.00 0.00 2.77
511 512 6.727824 TTGAACCTTTTTCAAATTCGCAAA 57.272 29.167 0.00 0.00 35.69 3.68
512 513 6.727824 TTTGAACCTTTTTCAAATTCGCAA 57.272 29.167 7.86 0.00 41.74 4.85
513 514 6.727824 TTTTGAACCTTTTTCAAATTCGCA 57.272 29.167 11.80 0.00 44.72 5.10
514 515 8.613613 AATTTTTGAACCTTTTTCAAATTCGC 57.386 26.923 11.80 0.00 44.72 4.70
737 2590 9.456147 TCCCGAATTAGAAACATAATTGAAGAA 57.544 29.630 0.00 0.00 35.89 2.52
739 2592 9.503427 GTTCCCGAATTAGAAACATAATTGAAG 57.497 33.333 0.00 0.00 35.89 3.02
740 2593 9.238368 AGTTCCCGAATTAGAAACATAATTGAA 57.762 29.630 0.00 0.00 35.89 2.69
742 2595 8.458843 ACAGTTCCCGAATTAGAAACATAATTG 58.541 33.333 0.00 0.00 35.89 2.32
743 2596 8.575649 ACAGTTCCCGAATTAGAAACATAATT 57.424 30.769 6.58 0.00 37.91 1.40
746 2599 7.989416 AAACAGTTCCCGAATTAGAAACATA 57.011 32.000 0.00 0.00 0.00 2.29
747 2600 6.894339 AAACAGTTCCCGAATTAGAAACAT 57.106 33.333 0.00 0.00 0.00 2.71
749 2602 7.423199 AGAAAAACAGTTCCCGAATTAGAAAC 58.577 34.615 0.00 0.00 0.00 2.78
866 2719 0.179056 CTGCATATTCGTCGGGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
870 2723 1.269723 TCTAGCTGCATATTCGTCGGG 59.730 52.381 1.02 0.00 0.00 5.14
873 2726 5.520288 TGAAAAGTCTAGCTGCATATTCGTC 59.480 40.000 1.02 0.00 0.00 4.20
875 2728 5.750547 TCTGAAAAGTCTAGCTGCATATTCG 59.249 40.000 1.02 0.00 0.00 3.34
876 2729 7.307870 CCATCTGAAAAGTCTAGCTGCATATTC 60.308 40.741 1.02 0.00 0.00 1.75
877 2730 6.485984 CCATCTGAAAAGTCTAGCTGCATATT 59.514 38.462 1.02 0.00 0.00 1.28
878 2731 5.996513 CCATCTGAAAAGTCTAGCTGCATAT 59.003 40.000 1.02 0.00 0.00 1.78
879 2732 5.363101 CCATCTGAAAAGTCTAGCTGCATA 58.637 41.667 1.02 0.00 0.00 3.14
880 2733 4.197750 CCATCTGAAAAGTCTAGCTGCAT 58.802 43.478 1.02 0.00 0.00 3.96
881 2734 3.603532 CCATCTGAAAAGTCTAGCTGCA 58.396 45.455 1.02 0.00 0.00 4.41
882 2735 2.354199 GCCATCTGAAAAGTCTAGCTGC 59.646 50.000 0.00 0.00 0.00 5.25
883 2736 2.941720 GGCCATCTGAAAAGTCTAGCTG 59.058 50.000 0.00 0.00 0.00 4.24
884 2737 2.419297 CGGCCATCTGAAAAGTCTAGCT 60.419 50.000 2.24 0.00 0.00 3.32
885 2738 1.936547 CGGCCATCTGAAAAGTCTAGC 59.063 52.381 2.24 0.00 0.00 3.42
886 2739 2.093447 ACCGGCCATCTGAAAAGTCTAG 60.093 50.000 0.00 0.00 0.00 2.43
887 2740 1.906574 ACCGGCCATCTGAAAAGTCTA 59.093 47.619 0.00 0.00 0.00 2.59
888 2741 0.693049 ACCGGCCATCTGAAAAGTCT 59.307 50.000 0.00 0.00 0.00 3.24
901 2754 1.019805 GTTCAAGCAGTAGACCGGCC 61.020 60.000 0.00 0.00 0.00 6.13
910 2763 0.676184 TCGCAGAGAGTTCAAGCAGT 59.324 50.000 0.00 0.00 0.00 4.40
911 2764 1.725706 CTTCGCAGAGAGTTCAAGCAG 59.274 52.381 0.00 0.00 38.43 4.24
970 2830 3.876914 CAGGTCTACTGCACAAGTCAAAA 59.123 43.478 0.00 0.00 40.97 2.44
994 2872 2.520536 CCTCCGTCCCCATGGATCC 61.521 68.421 15.22 4.20 44.28 3.36
1017 2895 2.430367 GGCCCGAACACCTTCACT 59.570 61.111 0.00 0.00 0.00 3.41
1059 2937 3.790416 TTCCAGGCACACCAGCACC 62.790 63.158 0.00 0.00 39.06 5.01
1061 2939 2.113774 CTTCCAGGCACACCAGCA 59.886 61.111 0.00 0.00 39.06 4.41
1063 2941 1.002868 CCTCTTCCAGGCACACCAG 60.003 63.158 0.00 0.00 39.06 4.00
1064 2942 3.160585 CCTCTTCCAGGCACACCA 58.839 61.111 0.00 0.00 39.06 4.17
1072 2950 4.821589 GGCGCCGACCTCTTCCAG 62.822 72.222 12.58 0.00 0.00 3.86
1075 2953 4.856607 CTCGGCGCCGACCTCTTC 62.857 72.222 45.37 5.86 44.01 2.87
1077 2955 4.790962 TACTCGGCGCCGACCTCT 62.791 66.667 45.37 28.48 44.01 3.69
1188 3076 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1256 4292 4.394610 GGAAAGAGGAATCTCAGTGAAAGC 59.605 45.833 0.00 0.00 42.34 3.51
1271 4307 2.612221 GGGTACTCGTTGTGGAAAGAGG 60.612 54.545 0.00 0.00 40.78 3.69
1323 4388 1.609783 GGCCTAGCAACCATCACCT 59.390 57.895 0.00 0.00 0.00 4.00
1385 4548 6.265196 AGCTGAACTAGGATCAGACATCTTAG 59.735 42.308 24.18 0.49 45.74 2.18
1429 4596 3.646715 CCGGGACCTGGCCAAAGA 61.647 66.667 7.01 0.00 0.00 2.52
1460 4627 3.769300 TCTCACCGAAAAGGATGAGATCA 59.231 43.478 12.19 0.00 41.99 2.92
1523 4690 6.785488 TTTCTTGTGCTTGTGTGTCTATAG 57.215 37.500 0.00 0.00 0.00 1.31
1524 4691 6.017440 GGTTTTCTTGTGCTTGTGTGTCTATA 60.017 38.462 0.00 0.00 0.00 1.31
1525 4692 5.221048 GGTTTTCTTGTGCTTGTGTGTCTAT 60.221 40.000 0.00 0.00 0.00 1.98
1526 4693 4.095782 GGTTTTCTTGTGCTTGTGTGTCTA 59.904 41.667 0.00 0.00 0.00 2.59
1527 4694 3.119495 GGTTTTCTTGTGCTTGTGTGTCT 60.119 43.478 0.00 0.00 0.00 3.41
1592 5897 7.254137 CGACTCTGGGATGACAACATATATAG 58.746 42.308 0.00 0.00 36.82 1.31
1991 9507 1.216175 CCATCATCCCATCAACCCAGT 59.784 52.381 0.00 0.00 0.00 4.00
2028 9544 4.467769 CATCCATAAGCTCCATGACCTTT 58.532 43.478 9.31 0.00 0.00 3.11
2055 9571 1.238439 CACCACACCGCTCTTTTCAT 58.762 50.000 0.00 0.00 0.00 2.57
2065 9581 1.063972 CAAAGCACACACCACACCG 59.936 57.895 0.00 0.00 0.00 4.94
2089 9610 2.679059 GCACCAGCACATCTCACATAGT 60.679 50.000 0.00 0.00 41.58 2.12
2090 9611 1.938577 GCACCAGCACATCTCACATAG 59.061 52.381 0.00 0.00 41.58 2.23
2091 9612 2.028420 GCACCAGCACATCTCACATA 57.972 50.000 0.00 0.00 41.58 2.29
2093 9614 4.384599 GCACCAGCACATCTCACA 57.615 55.556 0.00 0.00 41.58 3.58
2191 10019 9.051679 CATAAATTGGGTATACTTTGATGTCGA 57.948 33.333 2.25 0.00 0.00 4.20
2192 10020 8.836413 ACATAAATTGGGTATACTTTGATGTCG 58.164 33.333 2.25 0.00 0.00 4.35
2194 10022 8.413229 GCACATAAATTGGGTATACTTTGATGT 58.587 33.333 2.25 4.69 0.00 3.06
2196 10032 8.532186 TGCACATAAATTGGGTATACTTTGAT 57.468 30.769 2.25 0.00 0.00 2.57
2220 10056 9.233232 GTTGGGCGTAAATAATTAAGATCTTTG 57.767 33.333 14.36 0.00 0.00 2.77
2269 10105 1.226773 GGCATTTCGAGGCATGTGC 60.227 57.895 7.87 0.00 41.14 4.57
2430 10472 5.391950 GGCGTTGCTCTCTGAAATTTGATAA 60.392 40.000 0.00 0.00 0.00 1.75
2431 10473 4.094887 GGCGTTGCTCTCTGAAATTTGATA 59.905 41.667 0.00 0.00 0.00 2.15
2441 10483 0.320247 AGAAGTGGCGTTGCTCTCTG 60.320 55.000 0.00 0.00 0.00 3.35
2520 10563 2.512515 GGCGGGATGTCAGTCAGC 60.513 66.667 0.00 0.00 0.00 4.26
2525 10568 0.317160 TTATAGCGGCGGGATGTCAG 59.683 55.000 9.78 0.00 0.00 3.51
2557 10600 1.440362 CCTAGGGTTTTGGTGGGGGT 61.440 60.000 0.00 0.00 0.00 4.95
2560 10603 1.073098 AGACCTAGGGTTTTGGTGGG 58.927 55.000 14.81 0.00 35.25 4.61
2561 10604 2.554564 GGAAGACCTAGGGTTTTGGTGG 60.555 54.545 14.81 0.00 35.25 4.61
2595 10638 4.729227 TCTGACAACTTTTGGGGAAAAC 57.271 40.909 0.00 0.00 34.12 2.43
2599 10642 4.144297 CAGATTCTGACAACTTTTGGGGA 58.856 43.478 8.00 0.00 32.44 4.81
2626 10669 2.811431 TGAATCAAGCGACGGTGATTTT 59.189 40.909 18.71 5.67 42.98 1.82
2662 10737 3.950794 GAGCGGTGGCGGTGATTGA 62.951 63.158 0.00 0.00 46.35 2.57
2739 10814 2.158755 AGGTATTGGCATGAGTAGGCAC 60.159 50.000 0.00 0.00 41.56 5.01
2756 10831 1.676635 CGACGACCAGTGGGAGGTA 60.677 63.158 15.21 0.00 40.09 3.08
2788 10863 0.462759 CCTCCTCCTTCATTGCGACC 60.463 60.000 0.00 0.00 0.00 4.79
2790 10865 0.826715 CTCCTCCTCCTTCATTGCGA 59.173 55.000 0.00 0.00 0.00 5.10
2805 10880 1.134438 GTGGGGTTGTTCCTCCTCCT 61.134 60.000 0.00 0.00 35.35 3.69
2828 10903 1.079127 CCTCCGACGGTTTGATGCT 60.079 57.895 14.79 0.00 0.00 3.79
2831 10906 1.204941 CTTCTCCTCCGACGGTTTGAT 59.795 52.381 14.79 0.00 0.00 2.57
2837 10912 0.752009 TCATCCTTCTCCTCCGACGG 60.752 60.000 7.84 7.84 0.00 4.79
2839 10914 1.410882 CCTTCATCCTTCTCCTCCGAC 59.589 57.143 0.00 0.00 0.00 4.79
2843 10918 1.135960 CCCCCTTCATCCTTCTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
2855 10930 0.692756 CCTTCCTCCTCTCCCCCTTC 60.693 65.000 0.00 0.00 0.00 3.46
2862 10937 0.689412 CCCCTCACCTTCCTCCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
2884 10959 3.747976 GTGCCGGTGTGGGATTGC 61.748 66.667 1.90 0.00 41.76 3.56
2891 10966 2.721231 CACCTTTGTGCCGGTGTG 59.279 61.111 1.90 0.00 44.38 3.82
2903 10978 3.006110 CAGGACATCATGTTTTGCACCTT 59.994 43.478 0.00 0.00 0.00 3.50
2909 10984 2.353011 GGCACCAGGACATCATGTTTTG 60.353 50.000 0.00 0.00 0.00 2.44
2911 10986 1.549203 GGCACCAGGACATCATGTTT 58.451 50.000 0.00 0.00 0.00 2.83
2949 11024 4.803426 GTGGCTCGGTGCTCCTCG 62.803 72.222 2.85 0.00 42.39 4.63
2968 11043 1.863454 CATTATGACGAGCTGCACCTC 59.137 52.381 1.02 0.00 0.00 3.85
2981 11056 2.170397 AGGGTGTCGATGTGCATTATGA 59.830 45.455 0.00 0.00 0.00 2.15
2983 11058 2.485479 GGAGGGTGTCGATGTGCATTAT 60.485 50.000 0.00 0.00 0.00 1.28
2984 11059 1.134521 GGAGGGTGTCGATGTGCATTA 60.135 52.381 0.00 0.00 0.00 1.90
2985 11060 0.392998 GGAGGGTGTCGATGTGCATT 60.393 55.000 0.00 0.00 0.00 3.56
2992 11067 2.100989 GTCAGTAAGGAGGGTGTCGAT 58.899 52.381 0.00 0.00 0.00 3.59
2995 11070 0.903236 GGGTCAGTAAGGAGGGTGTC 59.097 60.000 0.00 0.00 0.00 3.67
2998 11073 1.988406 GCGGGTCAGTAAGGAGGGT 60.988 63.158 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.