Multiple sequence alignment - TraesCS7D01G513000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G513000 chr7D 100.000 2690 0 0 1 2690 614497888 614500577 0.000000e+00 4968.0
1 TraesCS7D01G513000 chr7D 78.652 267 38 12 2410 2670 88071028 88071281 2.770000e-35 159.0
2 TraesCS7D01G513000 chr7D 89.583 48 3 1 715 760 458012372 458012325 2.890000e-05 60.2
3 TraesCS7D01G513000 chr7D 73.057 193 37 10 2039 2217 579140817 579141008 1.000000e-03 54.7
4 TraesCS7D01G513000 chr7A 94.560 1011 31 6 994 1995 706764409 706765404 0.000000e+00 1541.0
5 TraesCS7D01G513000 chr7A 90.415 699 44 14 107 800 706743662 706744342 0.000000e+00 898.0
6 TraesCS7D01G513000 chr7A 91.379 290 15 6 2410 2690 706829668 706829956 3.250000e-104 388.0
7 TraesCS7D01G513000 chr7A 89.862 217 14 7 762 977 706744468 706744677 3.410000e-69 272.0
8 TraesCS7D01G513000 chr7A 83.860 285 34 5 102 377 728994904 728994623 7.390000e-66 261.0
9 TraesCS7D01G513000 chr7A 92.500 160 9 2 2214 2370 706765486 706765645 2.690000e-55 226.0
10 TraesCS7D01G513000 chr7A 89.773 88 5 2 2096 2183 706765406 706765489 2.830000e-20 110.0
11 TraesCS7D01G513000 chr7A 92.063 63 5 0 2365 2427 706829516 706829578 3.690000e-14 89.8
12 TraesCS7D01G513000 chr7A 100.000 45 0 0 3 47 706743580 706743624 1.720000e-12 84.2
13 TraesCS7D01G513000 chr7B 87.351 672 79 1 1025 1690 706797545 706798216 0.000000e+00 765.0
14 TraesCS7D01G513000 chr7B 75.771 227 42 11 1976 2190 99214505 99214730 4.740000e-18 102.0
15 TraesCS7D01G513000 chr7B 78.205 156 32 2 2035 2189 156678385 156678539 6.130000e-17 99.0
16 TraesCS7D01G513000 chrUn 78.933 712 121 14 1001 1690 261262197 261261493 8.780000e-125 457.0
17 TraesCS7D01G513000 chrUn 83.938 193 31 0 1498 1690 473032322 473032130 4.570000e-43 185.0
18 TraesCS7D01G513000 chr2A 77.215 711 131 19 1007 1694 764686156 764685454 1.170000e-103 387.0
19 TraesCS7D01G513000 chr2A 78.788 231 45 3 2430 2657 144030796 144031025 4.640000e-33 152.0
20 TraesCS7D01G513000 chr3A 82.203 354 43 8 97 437 497658081 497657735 1.220000e-73 287.0
21 TraesCS7D01G513000 chr3A 83.412 211 32 3 102 311 26672014 26671806 2.730000e-45 193.0
22 TraesCS7D01G513000 chr3A 76.753 271 45 12 2415 2670 70845417 70845684 4.670000e-28 135.0
23 TraesCS7D01G513000 chr3A 76.384 271 46 12 2415 2670 70844472 70844739 2.170000e-26 130.0
24 TraesCS7D01G513000 chr4B 82.724 301 44 5 101 398 534405348 534405643 7.390000e-66 261.0
25 TraesCS7D01G513000 chr5D 84.270 267 29 5 2420 2673 524926402 524926668 5.750000e-62 248.0
26 TraesCS7D01G513000 chr5D 80.000 280 42 12 2415 2690 509417256 509417525 7.600000e-46 195.0
27 TraesCS7D01G513000 chr5D 86.364 88 7 3 715 798 444302205 444302119 1.030000e-14 91.6
28 TraesCS7D01G513000 chr5B 83.513 279 32 4 2415 2690 107570331 107570598 5.750000e-62 248.0
29 TraesCS7D01G513000 chr5B 79.592 147 24 6 2530 2673 621601597 621601740 1.700000e-17 100.0
30 TraesCS7D01G513000 chr5B 76.101 159 34 3 2035 2190 162768584 162768741 2.220000e-11 80.5
31 TraesCS7D01G513000 chr1B 80.719 306 44 6 107 401 2926356 2926055 9.690000e-55 224.0
32 TraesCS7D01G513000 chr1B 77.941 136 26 3 2050 2183 685665665 685665798 6.170000e-12 82.4
33 TraesCS7D01G513000 chr4A 80.251 319 40 11 97 401 514415136 514414827 4.510000e-53 219.0
34 TraesCS7D01G513000 chr4A 95.833 48 2 0 2035 2082 628984041 628984088 7.980000e-11 78.7
35 TraesCS7D01G513000 chr4A 100.000 30 0 0 18 47 43690486 43690457 3.740000e-04 56.5
36 TraesCS7D01G513000 chr2D 81.625 283 34 11 2377 2644 601808178 601807899 4.510000e-53 219.0
37 TraesCS7D01G513000 chr6D 80.602 299 34 9 107 404 450466420 450466145 2.710000e-50 209.0
38 TraesCS7D01G513000 chr6D 79.835 243 32 10 2416 2644 55208523 55208284 7.710000e-36 161.0
39 TraesCS7D01G513000 chr6D 78.229 271 41 9 2415 2673 218463624 218463360 9.970000e-35 158.0
40 TraesCS7D01G513000 chr3D 79.605 304 45 11 97 398 28378039 28378327 4.540000e-48 202.0
41 TraesCS7D01G513000 chr2B 78.731 268 32 14 2410 2659 234758690 234758950 3.590000e-34 156.0
42 TraesCS7D01G513000 chr1D 79.487 234 32 14 2415 2633 400303960 400303728 4.640000e-33 152.0
43 TraesCS7D01G513000 chr1D 91.803 61 2 2 2036 2093 468179355 468179295 6.170000e-12 82.4
44 TraesCS7D01G513000 chr1D 87.097 62 5 2 2035 2093 468179206 468179145 1.730000e-07 67.6
45 TraesCS7D01G513000 chr6A 90.625 64 4 1 2035 2096 532532813 532532876 1.720000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G513000 chr7D 614497888 614500577 2689 False 4968.000000 4968 100.000000 1 2690 1 chr7D.!!$F3 2689
1 TraesCS7D01G513000 chr7A 706764409 706765645 1236 False 625.666667 1541 92.277667 994 2370 3 chr7A.!!$F2 1376
2 TraesCS7D01G513000 chr7A 706743580 706744677 1097 False 418.066667 898 93.425667 3 977 3 chr7A.!!$F1 974
3 TraesCS7D01G513000 chr7B 706797545 706798216 671 False 765.000000 765 87.351000 1025 1690 1 chr7B.!!$F3 665
4 TraesCS7D01G513000 chrUn 261261493 261262197 704 True 457.000000 457 78.933000 1001 1690 1 chrUn.!!$R1 689
5 TraesCS7D01G513000 chr2A 764685454 764686156 702 True 387.000000 387 77.215000 1007 1694 1 chr2A.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 1.064685 TGACATCCGAGGAGCTCTACA 60.065 52.381 14.64 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2212 0.041312 GTGCGTGCGTTCATTGAAGT 60.041 50.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.302161 GGTTTTTCTACACCCACCCTTT 58.698 45.455 0.00 0.00 0.00 3.11
48 49 3.707611 GGTTTTTCTACACCCACCCTTTT 59.292 43.478 0.00 0.00 0.00 2.27
70 71 3.907894 TTTTGCGAATGTTCTACACCC 57.092 42.857 0.00 0.00 0.00 4.61
71 72 2.552599 TTGCGAATGTTCTACACCCA 57.447 45.000 0.00 0.00 0.00 4.51
73 74 1.084289 GCGAATGTTCTACACCCACC 58.916 55.000 0.00 0.00 0.00 4.61
74 75 1.734163 CGAATGTTCTACACCCACCC 58.266 55.000 0.00 0.00 0.00 4.61
75 76 1.278127 CGAATGTTCTACACCCACCCT 59.722 52.381 0.00 0.00 0.00 4.34
76 77 2.290071 CGAATGTTCTACACCCACCCTT 60.290 50.000 0.00 0.00 0.00 3.95
77 78 3.763057 GAATGTTCTACACCCACCCTTT 58.237 45.455 0.00 0.00 0.00 3.11
78 79 3.895704 ATGTTCTACACCCACCCTTTT 57.104 42.857 0.00 0.00 0.00 2.27
137 138 5.774184 TGAAACTTTGTGGGAATGATCATCA 59.226 36.000 9.06 0.00 0.00 3.07
181 182 6.711194 TGCAAATTTTGGTGATCAAATGACAT 59.289 30.769 10.96 0.00 43.95 3.06
196 197 1.064685 TGACATCCGAGGAGCTCTACA 60.065 52.381 14.64 0.00 0.00 2.74
198 199 1.341089 ACATCCGAGGAGCTCTACACA 60.341 52.381 14.64 0.00 0.00 3.72
232 233 7.853929 ACAAAATCACTCAAAATGTACGTACAC 59.146 33.333 29.54 5.98 39.30 2.90
233 234 5.756950 ATCACTCAAAATGTACGTACACG 57.243 39.130 29.54 17.84 46.33 4.49
234 235 3.982701 TCACTCAAAATGTACGTACACGG 59.017 43.478 29.54 18.28 44.95 4.94
284 288 6.952773 ATAGTACAGTTCTCCTCTGATGAC 57.047 41.667 0.00 0.00 36.81 3.06
294 298 3.937706 CTCCTCTGATGACATTTGACCAC 59.062 47.826 0.00 0.00 0.00 4.16
307 311 2.663826 TGACCACAAAACTTGGCAAC 57.336 45.000 0.00 0.00 37.69 4.17
438 443 3.782656 TCAACCACTAGTTTCCCTTCC 57.217 47.619 0.00 0.00 36.18 3.46
515 520 4.836825 TCCACTTGAATTGACTGGAGATC 58.163 43.478 0.00 0.00 0.00 2.75
521 526 2.698855 ATTGACTGGAGATCCAACCG 57.301 50.000 2.65 0.00 46.97 4.44
532 537 6.184068 TGGAGATCCAACCGAATATTTTCAA 58.816 36.000 0.00 0.00 44.35 2.69
533 538 6.661377 TGGAGATCCAACCGAATATTTTCAAA 59.339 34.615 0.00 0.00 44.35 2.69
568 573 8.967664 AGTTCTTTTATTTGTGTGTACTACCA 57.032 30.769 0.00 0.00 0.00 3.25
569 574 9.569122 AGTTCTTTTATTTGTGTGTACTACCAT 57.431 29.630 0.00 0.00 0.00 3.55
577 582 7.753309 TTTGTGTGTACTACCATAATTGCTT 57.247 32.000 0.00 0.00 0.00 3.91
580 585 8.259049 TGTGTGTACTACCATAATTGCTTAAC 57.741 34.615 0.00 0.00 0.00 2.01
591 596 8.188139 ACCATAATTGCTTAACTATTTTGACCG 58.812 33.333 0.00 0.00 28.85 4.79
609 614 2.571653 ACCGGGAGACAATCATTTCAGA 59.428 45.455 6.32 0.00 0.00 3.27
610 615 3.009033 ACCGGGAGACAATCATTTCAGAA 59.991 43.478 6.32 0.00 0.00 3.02
688 693 8.132352 TTGAAAGTCAAAAGCCCATGGTACAG 62.132 42.308 11.73 0.00 35.71 2.74
743 748 4.034510 CCTCCATCTCAAAATGTAAGACGC 59.965 45.833 0.00 0.00 0.00 5.19
790 796 7.998753 AACGACTTATATTTTTAGACGGAGG 57.001 36.000 0.00 0.00 32.79 4.30
794 800 8.348507 CGACTTATATTTTTAGACGGAGGTAGT 58.651 37.037 0.00 0.00 0.00 2.73
845 1010 7.333528 TCCTCTGTATGCATGGTTATTTTTC 57.666 36.000 10.16 0.00 0.00 2.29
852 1017 7.647318 TGTATGCATGGTTATTTTTCGCTAATG 59.353 33.333 10.16 0.00 0.00 1.90
853 1018 4.803088 TGCATGGTTATTTTTCGCTAATGC 59.197 37.500 0.00 0.00 38.63 3.56
863 1028 5.888691 TTTTCGCTAATGCACATCCTTAA 57.111 34.783 0.00 0.00 39.64 1.85
925 1090 3.500448 TCAATGGTGAAGGTGCAGTTA 57.500 42.857 0.00 0.00 0.00 2.24
977 1142 4.892934 AGCTTGTTCATTGTTTACTTGGGA 59.107 37.500 0.00 0.00 0.00 4.37
978 1143 5.362430 AGCTTGTTCATTGTTTACTTGGGAA 59.638 36.000 0.00 0.00 0.00 3.97
979 1144 6.045955 GCTTGTTCATTGTTTACTTGGGAAA 58.954 36.000 0.00 0.00 0.00 3.13
980 1145 6.536941 GCTTGTTCATTGTTTACTTGGGAAAA 59.463 34.615 0.00 0.00 0.00 2.29
981 1146 7.065204 GCTTGTTCATTGTTTACTTGGGAAAAA 59.935 33.333 0.00 0.00 0.00 1.94
1270 1465 0.038892 GTCCTTCTCCGCGTACAACA 60.039 55.000 4.92 0.00 0.00 3.33
1276 1471 0.866061 CTCCGCGTACAACATCTCCG 60.866 60.000 4.92 0.00 0.00 4.63
1323 1518 0.397394 TCAATGGGGCCATGGACATG 60.397 55.000 22.13 12.57 36.68 3.21
1338 1533 1.192146 ACATGACGTACACCAGGCCT 61.192 55.000 0.00 0.00 0.00 5.19
1341 1536 1.215647 GACGTACACCAGGCCTCTG 59.784 63.158 0.00 3.35 40.59 3.35
1470 1665 2.590092 GAGGGCCCGTATGTGCTT 59.410 61.111 18.44 0.00 0.00 3.91
1525 1720 2.345760 GCTACGGGGGTGTTCGAGA 61.346 63.158 0.00 0.00 0.00 4.04
1690 1897 4.321974 GGCCCAAGAAAATCGTCTTTTGAT 60.322 41.667 0.00 0.00 35.63 2.57
1776 1986 9.715123 TTCATGAAAATATAAACTGCACGTATG 57.285 29.630 5.45 0.00 0.00 2.39
1842 2052 1.630126 ATTGAGCAGGCCGTCAGGAT 61.630 55.000 0.00 0.00 41.02 3.24
1858 2068 5.352569 CGTCAGGATTAAGAACTGATTTGCT 59.647 40.000 9.02 0.00 42.54 3.91
1867 2077 2.969443 ACTGATTTGCTGTTGTACGC 57.031 45.000 0.00 0.00 0.00 4.42
1990 2206 2.163613 AGATGCTCACAACATGCACATG 59.836 45.455 9.06 9.06 44.15 3.21
2004 2220 2.592194 GCACATGCACTCACTTCAATG 58.408 47.619 0.00 0.00 41.59 2.82
2005 2221 2.227149 GCACATGCACTCACTTCAATGA 59.773 45.455 0.00 0.00 41.59 2.57
2006 2222 3.304861 GCACATGCACTCACTTCAATGAA 60.305 43.478 0.00 0.00 41.59 2.57
2007 2223 4.224433 CACATGCACTCACTTCAATGAAC 58.776 43.478 0.00 0.00 0.00 3.18
2008 2224 3.058708 ACATGCACTCACTTCAATGAACG 60.059 43.478 0.00 0.00 0.00 3.95
2009 2225 1.264020 TGCACTCACTTCAATGAACGC 59.736 47.619 0.00 0.00 0.00 4.84
2010 2226 1.264020 GCACTCACTTCAATGAACGCA 59.736 47.619 0.00 0.00 0.00 5.24
2011 2227 2.908634 CACTCACTTCAATGAACGCAC 58.091 47.619 0.00 0.00 0.00 5.34
2012 2228 1.526887 ACTCACTTCAATGAACGCACG 59.473 47.619 0.00 0.00 0.00 5.34
2013 2229 0.234625 TCACTTCAATGAACGCACGC 59.765 50.000 0.00 0.00 0.00 5.34
2014 2230 0.041400 CACTTCAATGAACGCACGCA 60.041 50.000 0.00 0.00 0.00 5.24
2015 2231 0.041312 ACTTCAATGAACGCACGCAC 60.041 50.000 0.00 0.00 0.00 5.34
2016 2232 1.054348 CTTCAATGAACGCACGCACG 61.054 55.000 0.00 0.00 39.50 5.34
2017 2233 3.158813 CAATGAACGCACGCACGC 61.159 61.111 0.00 0.00 36.19 5.34
2018 2234 3.644976 AATGAACGCACGCACGCA 61.645 55.556 0.00 0.00 36.19 5.24
2019 2235 3.855209 AATGAACGCACGCACGCAC 62.855 57.895 0.00 0.00 36.19 5.34
2028 2244 4.388499 CGCACGCACCCTACCCTT 62.388 66.667 0.00 0.00 0.00 3.95
2029 2245 2.983791 GCACGCACCCTACCCTTA 59.016 61.111 0.00 0.00 0.00 2.69
2030 2246 1.525442 GCACGCACCCTACCCTTAT 59.475 57.895 0.00 0.00 0.00 1.73
2031 2247 0.754472 GCACGCACCCTACCCTTATA 59.246 55.000 0.00 0.00 0.00 0.98
2032 2248 1.139455 GCACGCACCCTACCCTTATAA 59.861 52.381 0.00 0.00 0.00 0.98
2033 2249 2.805657 GCACGCACCCTACCCTTATAAG 60.806 54.545 5.43 5.43 0.00 1.73
2034 2250 1.415289 ACGCACCCTACCCTTATAAGC 59.585 52.381 6.99 0.00 0.00 3.09
2035 2251 1.604693 CGCACCCTACCCTTATAAGCG 60.605 57.143 6.99 1.01 36.62 4.68
2036 2252 1.690352 GCACCCTACCCTTATAAGCGA 59.310 52.381 6.99 0.00 0.00 4.93
2037 2253 2.288886 GCACCCTACCCTTATAAGCGAG 60.289 54.545 6.99 3.70 0.00 5.03
2038 2254 3.228453 CACCCTACCCTTATAAGCGAGA 58.772 50.000 6.99 0.00 0.00 4.04
2039 2255 3.833070 CACCCTACCCTTATAAGCGAGAT 59.167 47.826 6.99 0.00 0.00 2.75
2040 2256 5.014858 CACCCTACCCTTATAAGCGAGATA 58.985 45.833 6.99 0.00 0.00 1.98
2041 2257 5.015515 ACCCTACCCTTATAAGCGAGATAC 58.984 45.833 6.99 0.00 0.00 2.24
2042 2258 5.222296 ACCCTACCCTTATAAGCGAGATACT 60.222 44.000 6.99 0.00 0.00 2.12
2043 2259 5.125739 CCCTACCCTTATAAGCGAGATACTG 59.874 48.000 6.99 0.00 0.00 2.74
2044 2260 5.944599 CCTACCCTTATAAGCGAGATACTGA 59.055 44.000 6.99 0.00 0.00 3.41
2045 2261 5.968528 ACCCTTATAAGCGAGATACTGAG 57.031 43.478 6.99 0.00 0.00 3.35
2046 2262 4.218852 ACCCTTATAAGCGAGATACTGAGC 59.781 45.833 6.99 0.00 0.00 4.26
2047 2263 4.381079 CCCTTATAAGCGAGATACTGAGCC 60.381 50.000 6.99 0.00 0.00 4.70
2048 2264 2.999507 ATAAGCGAGATACTGAGCCG 57.000 50.000 0.00 0.00 0.00 5.52
2049 2265 1.963172 TAAGCGAGATACTGAGCCGA 58.037 50.000 0.00 0.00 0.00 5.54
2050 2266 0.382515 AAGCGAGATACTGAGCCGAC 59.617 55.000 0.00 0.00 0.00 4.79
2051 2267 0.748367 AGCGAGATACTGAGCCGACA 60.748 55.000 0.00 0.00 0.00 4.35
2052 2268 0.592754 GCGAGATACTGAGCCGACAC 60.593 60.000 0.00 0.00 0.00 3.67
2053 2269 0.733150 CGAGATACTGAGCCGACACA 59.267 55.000 0.00 0.00 0.00 3.72
2054 2270 1.132453 CGAGATACTGAGCCGACACAA 59.868 52.381 0.00 0.00 0.00 3.33
2055 2271 2.223595 CGAGATACTGAGCCGACACAAT 60.224 50.000 0.00 0.00 0.00 2.71
2056 2272 3.003378 CGAGATACTGAGCCGACACAATA 59.997 47.826 0.00 0.00 0.00 1.90
2057 2273 4.320567 CGAGATACTGAGCCGACACAATAT 60.321 45.833 0.00 0.00 0.00 1.28
2058 2274 5.127693 AGATACTGAGCCGACACAATATC 57.872 43.478 0.00 0.00 0.00 1.63
2059 2275 4.830046 AGATACTGAGCCGACACAATATCT 59.170 41.667 0.00 0.00 0.00 1.98
2060 2276 3.895232 ACTGAGCCGACACAATATCTT 57.105 42.857 0.00 0.00 0.00 2.40
2061 2277 3.525537 ACTGAGCCGACACAATATCTTG 58.474 45.455 0.00 0.00 38.39 3.02
2062 2278 3.195610 ACTGAGCCGACACAATATCTTGA 59.804 43.478 0.00 0.00 36.20 3.02
2063 2279 3.785486 TGAGCCGACACAATATCTTGAG 58.215 45.455 0.00 0.00 36.20 3.02
2064 2280 3.447229 TGAGCCGACACAATATCTTGAGA 59.553 43.478 0.00 0.00 36.20 3.27
2065 2281 4.100035 TGAGCCGACACAATATCTTGAGAT 59.900 41.667 0.00 0.00 36.20 2.75
2066 2282 5.028549 AGCCGACACAATATCTTGAGATT 57.971 39.130 0.00 0.00 36.20 2.40
2067 2283 4.813161 AGCCGACACAATATCTTGAGATTG 59.187 41.667 14.16 14.16 38.70 2.67
2068 2284 4.811024 GCCGACACAATATCTTGAGATTGA 59.189 41.667 20.38 0.00 36.69 2.57
2069 2285 5.468072 GCCGACACAATATCTTGAGATTGAT 59.532 40.000 20.38 10.57 36.69 2.57
2070 2286 6.646653 GCCGACACAATATCTTGAGATTGATA 59.353 38.462 20.38 0.00 36.69 2.15
2071 2287 7.171508 GCCGACACAATATCTTGAGATTGATAA 59.828 37.037 20.38 0.00 36.69 1.75
2072 2288 9.045223 CCGACACAATATCTTGAGATTGATAAA 57.955 33.333 20.38 0.00 36.69 1.40
2091 2307 9.516314 TTGATAAAGTCAACATACGTCTCATAG 57.484 33.333 0.00 0.00 41.79 2.23
2092 2308 8.683615 TGATAAAGTCAACATACGTCTCATAGT 58.316 33.333 0.00 0.00 32.78 2.12
2093 2309 9.517609 GATAAAGTCAACATACGTCTCATAGTT 57.482 33.333 0.00 0.00 0.00 2.24
2094 2310 7.582435 AAAGTCAACATACGTCTCATAGTTG 57.418 36.000 0.00 0.00 38.08 3.16
2117 2333 1.819288 GAGAACGTCTCCATCCACTGA 59.181 52.381 0.00 0.00 37.55 3.41
2123 2339 2.932614 CGTCTCCATCCACTGAATGAAC 59.067 50.000 0.00 0.00 0.00 3.18
2124 2340 3.368843 CGTCTCCATCCACTGAATGAACT 60.369 47.826 0.00 0.00 0.00 3.01
2128 2344 4.326826 TCCATCCACTGAATGAACTTCAC 58.673 43.478 0.00 0.00 38.97 3.18
2135 2351 5.449862 CCACTGAATGAACTTCACCGAAAAA 60.450 40.000 0.00 0.00 38.97 1.94
2179 2395 4.744795 ACAAACACCAGTGCCAAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
2180 2396 4.692228 ACAAACACCAGTGCCAAATTTAG 58.308 39.130 0.00 0.00 0.00 1.85
2181 2397 4.057432 CAAACACCAGTGCCAAATTTAGG 58.943 43.478 0.00 0.00 0.00 2.69
2182 2398 3.237268 ACACCAGTGCCAAATTTAGGA 57.763 42.857 9.90 0.00 0.00 2.94
2183 2399 2.890945 ACACCAGTGCCAAATTTAGGAC 59.109 45.455 0.06 0.06 0.00 3.85
2184 2400 3.157087 CACCAGTGCCAAATTTAGGACT 58.843 45.455 5.00 5.00 0.00 3.85
2185 2401 3.573967 CACCAGTGCCAAATTTAGGACTT 59.426 43.478 7.99 0.00 0.00 3.01
2186 2402 3.573967 ACCAGTGCCAAATTTAGGACTTG 59.426 43.478 7.99 7.75 0.00 3.16
2187 2403 3.826157 CCAGTGCCAAATTTAGGACTTGA 59.174 43.478 7.99 0.00 0.00 3.02
2188 2404 4.280677 CCAGTGCCAAATTTAGGACTTGAA 59.719 41.667 7.99 0.00 0.00 2.69
2189 2405 5.222631 CAGTGCCAAATTTAGGACTTGAAC 58.777 41.667 7.99 0.00 0.00 3.18
2190 2406 4.280929 AGTGCCAAATTTAGGACTTGAACC 59.719 41.667 5.00 0.00 0.00 3.62
2191 2407 3.576550 TGCCAAATTTAGGACTTGAACCC 59.423 43.478 9.90 0.00 0.00 4.11
2192 2408 3.056107 GCCAAATTTAGGACTTGAACCCC 60.056 47.826 9.90 0.00 0.00 4.95
2193 2409 4.156477 CCAAATTTAGGACTTGAACCCCA 58.844 43.478 0.00 0.00 0.00 4.96
2194 2410 4.220602 CCAAATTTAGGACTTGAACCCCAG 59.779 45.833 0.00 0.00 0.00 4.45
2195 2411 4.741928 AATTTAGGACTTGAACCCCAGT 57.258 40.909 0.00 0.00 0.00 4.00
2196 2412 3.502123 TTTAGGACTTGAACCCCAGTG 57.498 47.619 0.00 0.00 0.00 3.66
2197 2413 2.112279 TAGGACTTGAACCCCAGTGT 57.888 50.000 0.00 0.00 0.00 3.55
2198 2414 0.474184 AGGACTTGAACCCCAGTGTG 59.526 55.000 0.00 0.00 0.00 3.82
2199 2415 0.182775 GGACTTGAACCCCAGTGTGT 59.817 55.000 0.00 0.00 0.00 3.72
2200 2416 1.409661 GGACTTGAACCCCAGTGTGTT 60.410 52.381 0.00 0.00 0.00 3.32
2201 2417 2.158726 GGACTTGAACCCCAGTGTGTTA 60.159 50.000 0.00 0.00 0.00 2.41
2202 2418 3.139077 GACTTGAACCCCAGTGTGTTAG 58.861 50.000 0.00 0.00 0.00 2.34
2203 2419 2.508300 ACTTGAACCCCAGTGTGTTAGT 59.492 45.455 0.00 0.00 0.00 2.24
2204 2420 3.053917 ACTTGAACCCCAGTGTGTTAGTT 60.054 43.478 0.00 0.00 0.00 2.24
2205 2421 3.655615 TGAACCCCAGTGTGTTAGTTT 57.344 42.857 0.00 0.00 0.00 2.66
2206 2422 3.547746 TGAACCCCAGTGTGTTAGTTTC 58.452 45.455 0.00 0.00 0.00 2.78
2207 2423 3.054287 TGAACCCCAGTGTGTTAGTTTCA 60.054 43.478 0.00 0.00 0.00 2.69
2208 2424 2.927028 ACCCCAGTGTGTTAGTTTCAC 58.073 47.619 0.00 0.00 36.48 3.18
2209 2425 2.227194 CCCCAGTGTGTTAGTTTCACC 58.773 52.381 0.00 0.00 35.25 4.02
2210 2426 2.422235 CCCCAGTGTGTTAGTTTCACCA 60.422 50.000 0.00 0.00 35.25 4.17
2211 2427 2.616842 CCCAGTGTGTTAGTTTCACCAC 59.383 50.000 0.00 0.00 35.25 4.16
2212 2428 3.275143 CCAGTGTGTTAGTTTCACCACA 58.725 45.455 0.00 0.00 35.59 4.17
2223 2439 0.397941 TTCACCACAAGGAGCCTGAG 59.602 55.000 0.00 0.00 38.69 3.35
2241 2460 3.968405 GAGCTACGCTCGGACGTGTTT 62.968 57.143 12.85 0.00 45.85 2.83
2267 2486 8.955388 TGCATGTTAGAAATAGTTTAATGCAGA 58.045 29.630 2.59 0.00 41.96 4.26
2287 2506 9.809096 ATGCAGATCACTTATTTAGGTATATCG 57.191 33.333 0.00 0.00 0.00 2.92
2375 2594 9.383519 TCTTGTTTCCATCTAATTATGACTCAC 57.616 33.333 0.00 0.00 0.00 3.51
2376 2595 9.166173 CTTGTTTCCATCTAATTATGACTCACA 57.834 33.333 0.00 0.00 0.00 3.58
2377 2596 8.492673 TGTTTCCATCTAATTATGACTCACAC 57.507 34.615 0.00 0.00 0.00 3.82
2378 2597 8.100164 TGTTTCCATCTAATTATGACTCACACA 58.900 33.333 0.00 0.00 0.00 3.72
2379 2598 9.113838 GTTTCCATCTAATTATGACTCACACAT 57.886 33.333 0.00 0.00 0.00 3.21
2381 2600 9.987272 TTCCATCTAATTATGACTCACACATAG 57.013 33.333 0.00 0.00 32.88 2.23
2382 2601 8.588472 TCCATCTAATTATGACTCACACATAGG 58.412 37.037 0.00 0.00 32.88 2.57
2383 2602 7.821359 CCATCTAATTATGACTCACACATAGGG 59.179 40.741 0.00 0.00 32.88 3.53
2384 2603 6.759272 TCTAATTATGACTCACACATAGGGC 58.241 40.000 0.00 0.00 32.88 5.19
2385 2604 5.636903 AATTATGACTCACACATAGGGCT 57.363 39.130 0.00 0.00 32.88 5.19
2386 2605 2.996249 ATGACTCACACATAGGGCTG 57.004 50.000 0.00 0.00 0.00 4.85
2387 2606 0.250234 TGACTCACACATAGGGCTGC 59.750 55.000 0.00 0.00 0.00 5.25
2388 2607 0.250234 GACTCACACATAGGGCTGCA 59.750 55.000 0.50 0.00 0.00 4.41
2389 2608 0.692476 ACTCACACATAGGGCTGCAA 59.308 50.000 0.50 0.00 0.00 4.08
2390 2609 1.339438 ACTCACACATAGGGCTGCAAG 60.339 52.381 0.50 0.00 0.00 4.01
2391 2610 0.983467 TCACACATAGGGCTGCAAGA 59.017 50.000 0.50 0.00 34.07 3.02
2392 2611 1.350684 TCACACATAGGGCTGCAAGAA 59.649 47.619 0.50 0.00 34.07 2.52
2393 2612 2.161855 CACACATAGGGCTGCAAGAAA 58.838 47.619 0.50 0.00 34.07 2.52
2394 2613 2.557924 CACACATAGGGCTGCAAGAAAA 59.442 45.455 0.50 0.00 34.07 2.29
2395 2614 3.005684 CACACATAGGGCTGCAAGAAAAA 59.994 43.478 0.50 0.00 34.07 1.94
2396 2615 3.005791 ACACATAGGGCTGCAAGAAAAAC 59.994 43.478 0.50 0.00 34.07 2.43
2397 2616 3.256631 CACATAGGGCTGCAAGAAAAACT 59.743 43.478 0.50 0.00 34.07 2.66
2398 2617 3.507622 ACATAGGGCTGCAAGAAAAACTC 59.492 43.478 0.50 0.00 34.07 3.01
2399 2618 0.954452 AGGGCTGCAAGAAAAACTCG 59.046 50.000 0.50 0.00 34.07 4.18
2400 2619 0.951558 GGGCTGCAAGAAAAACTCGA 59.048 50.000 0.50 0.00 34.07 4.04
2401 2620 1.068954 GGGCTGCAAGAAAAACTCGAG 60.069 52.381 11.84 11.84 34.07 4.04
2402 2621 1.873591 GGCTGCAAGAAAAACTCGAGA 59.126 47.619 21.68 0.00 34.07 4.04
2403 2622 2.349912 GGCTGCAAGAAAAACTCGAGAC 60.350 50.000 21.68 4.95 34.07 3.36
2404 2623 2.545946 GCTGCAAGAAAAACTCGAGACT 59.454 45.455 21.68 2.24 34.07 3.24
2405 2624 3.002759 GCTGCAAGAAAAACTCGAGACTT 59.997 43.478 21.68 9.09 34.07 3.01
2406 2625 4.521943 CTGCAAGAAAAACTCGAGACTTG 58.478 43.478 21.68 22.18 38.07 3.16
2407 2626 3.938963 TGCAAGAAAAACTCGAGACTTGT 59.061 39.130 21.68 6.93 37.57 3.16
2408 2627 4.201812 TGCAAGAAAAACTCGAGACTTGTG 60.202 41.667 21.68 8.91 37.57 3.33
2409 2628 4.034048 GCAAGAAAAACTCGAGACTTGTGA 59.966 41.667 21.68 0.00 37.57 3.58
2410 2629 5.732288 CAAGAAAAACTCGAGACTTGTGAG 58.268 41.667 21.68 0.00 35.85 3.51
2411 2630 3.804873 AGAAAAACTCGAGACTTGTGAGC 59.195 43.478 21.68 0.00 32.98 4.26
2412 2631 3.460857 AAAACTCGAGACTTGTGAGCT 57.539 42.857 21.68 0.00 32.98 4.09
2413 2632 2.430546 AACTCGAGACTTGTGAGCTG 57.569 50.000 21.68 0.00 32.98 4.24
2414 2633 0.038709 ACTCGAGACTTGTGAGCTGC 60.039 55.000 21.68 0.00 32.98 5.25
2415 2634 0.243365 CTCGAGACTTGTGAGCTGCT 59.757 55.000 6.58 0.00 0.00 4.24
2416 2635 0.242286 TCGAGACTTGTGAGCTGCTC 59.758 55.000 22.38 22.38 0.00 4.26
2417 2636 1.069924 CGAGACTTGTGAGCTGCTCG 61.070 60.000 23.35 12.24 36.63 5.03
2418 2637 0.242286 GAGACTTGTGAGCTGCTCGA 59.758 55.000 23.35 10.81 32.35 4.04
2419 2638 0.243365 AGACTTGTGAGCTGCTCGAG 59.757 55.000 23.35 21.07 32.35 4.04
2420 2639 0.242286 GACTTGTGAGCTGCTCGAGA 59.758 55.000 23.35 11.05 32.35 4.04
2421 2640 0.894141 ACTTGTGAGCTGCTCGAGAT 59.106 50.000 23.35 6.33 32.35 2.75
2422 2641 1.274728 ACTTGTGAGCTGCTCGAGATT 59.725 47.619 23.35 6.16 32.35 2.40
2423 2642 1.659601 CTTGTGAGCTGCTCGAGATTG 59.340 52.381 23.35 5.99 32.35 2.67
2424 2643 0.890683 TGTGAGCTGCTCGAGATTGA 59.109 50.000 23.35 2.34 32.35 2.57
2425 2644 1.276415 GTGAGCTGCTCGAGATTGAC 58.724 55.000 23.35 11.14 32.35 3.18
2426 2645 1.135141 GTGAGCTGCTCGAGATTGACT 60.135 52.381 23.35 5.06 32.35 3.41
2427 2646 1.133982 TGAGCTGCTCGAGATTGACTC 59.866 52.381 23.35 14.36 41.79 3.36
2428 2647 1.133982 GAGCTGCTCGAGATTGACTCA 59.866 52.381 18.75 1.15 45.14 3.41
2429 2648 1.547820 AGCTGCTCGAGATTGACTCAA 59.452 47.619 18.75 0.00 45.14 3.02
2430 2649 2.028658 AGCTGCTCGAGATTGACTCAAA 60.029 45.455 18.75 0.00 45.14 2.69
2431 2650 2.738846 GCTGCTCGAGATTGACTCAAAA 59.261 45.455 18.75 0.00 45.14 2.44
2432 2651 3.187227 GCTGCTCGAGATTGACTCAAAAA 59.813 43.478 18.75 0.00 45.14 1.94
2433 2652 4.668686 GCTGCTCGAGATTGACTCAAAAAG 60.669 45.833 18.75 0.00 45.14 2.27
2434 2653 4.631131 TGCTCGAGATTGACTCAAAAAGA 58.369 39.130 18.75 0.00 45.14 2.52
2435 2654 5.056480 TGCTCGAGATTGACTCAAAAAGAA 58.944 37.500 18.75 0.00 45.14 2.52
2436 2655 5.527214 TGCTCGAGATTGACTCAAAAAGAAA 59.473 36.000 18.75 0.00 45.14 2.52
2437 2656 6.205464 TGCTCGAGATTGACTCAAAAAGAAAT 59.795 34.615 18.75 0.00 45.14 2.17
2438 2657 6.522510 GCTCGAGATTGACTCAAAAAGAAATG 59.477 38.462 18.75 0.00 45.14 2.32
2439 2658 7.571983 GCTCGAGATTGACTCAAAAAGAAATGA 60.572 37.037 18.75 0.00 45.14 2.57
2440 2659 7.800767 TCGAGATTGACTCAAAAAGAAATGAG 58.199 34.615 0.00 1.46 46.69 2.90
2441 2660 6.522510 CGAGATTGACTCAAAAAGAAATGAGC 59.477 38.462 2.86 0.00 45.50 4.26
2442 2661 7.521871 AGATTGACTCAAAAAGAAATGAGCT 57.478 32.000 2.86 0.00 45.50 4.09
2443 2662 7.368833 AGATTGACTCAAAAAGAAATGAGCTG 58.631 34.615 0.00 0.00 45.50 4.24
2444 2663 6.698008 TTGACTCAAAAAGAAATGAGCTGA 57.302 33.333 0.00 0.00 45.50 4.26
2445 2664 6.309712 TGACTCAAAAAGAAATGAGCTGAG 57.690 37.500 0.00 0.00 45.50 3.35
2446 2665 5.824624 TGACTCAAAAAGAAATGAGCTGAGT 59.175 36.000 0.00 1.66 45.50 3.41
2447 2666 6.992123 TGACTCAAAAAGAAATGAGCTGAGTA 59.008 34.615 0.00 0.00 45.50 2.59
2448 2667 7.663081 TGACTCAAAAAGAAATGAGCTGAGTAT 59.337 33.333 0.00 0.00 45.50 2.12
2449 2668 7.814642 ACTCAAAAAGAAATGAGCTGAGTATG 58.185 34.615 0.00 0.00 45.50 2.39
2450 2669 7.663081 ACTCAAAAAGAAATGAGCTGAGTATGA 59.337 33.333 0.00 0.00 45.50 2.15
2451 2670 8.037382 TCAAAAAGAAATGAGCTGAGTATGAG 57.963 34.615 0.00 0.00 0.00 2.90
2464 2683 5.862811 CTGAGTATGAGCACTTTTTGTAGC 58.137 41.667 0.00 0.00 0.00 3.58
2465 2684 5.551233 TGAGTATGAGCACTTTTTGTAGCT 58.449 37.500 0.00 0.00 36.35 3.32
2466 2685 5.639506 TGAGTATGAGCACTTTTTGTAGCTC 59.360 40.000 6.34 6.34 43.49 4.09
2470 2689 5.362556 TGAGCACTTTTTGTAGCTCAATC 57.637 39.130 12.93 0.00 46.35 2.67
2471 2690 4.821260 TGAGCACTTTTTGTAGCTCAATCA 59.179 37.500 12.93 0.00 46.35 2.57
2472 2691 5.299028 TGAGCACTTTTTGTAGCTCAATCAA 59.701 36.000 12.93 0.00 46.35 2.57
2473 2692 5.523369 AGCACTTTTTGTAGCTCAATCAAC 58.477 37.500 0.00 0.00 35.84 3.18
2474 2693 5.067674 AGCACTTTTTGTAGCTCAATCAACA 59.932 36.000 0.00 0.00 35.84 3.33
2475 2694 5.748152 GCACTTTTTGTAGCTCAATCAACAA 59.252 36.000 0.00 0.00 35.84 2.83
2476 2695 6.255453 GCACTTTTTGTAGCTCAATCAACAAA 59.745 34.615 6.20 6.20 39.39 2.83
2477 2696 7.612266 CACTTTTTGTAGCTCAATCAACAAAC 58.388 34.615 9.23 0.00 40.47 2.93
2478 2697 6.472163 ACTTTTTGTAGCTCAATCAACAAACG 59.528 34.615 9.23 6.96 40.47 3.60
2479 2698 5.743026 TTTGTAGCTCAATCAACAAACGA 57.257 34.783 6.20 0.00 37.02 3.85
2480 2699 4.990543 TGTAGCTCAATCAACAAACGAG 57.009 40.909 0.00 0.00 0.00 4.18
2482 2701 2.977405 GCTCAATCAACAAACGAGCT 57.023 45.000 0.00 0.00 44.47 4.09
2483 2702 2.578495 GCTCAATCAACAAACGAGCTG 58.422 47.619 0.00 0.00 44.47 4.24
2484 2703 2.224079 GCTCAATCAACAAACGAGCTGA 59.776 45.455 0.00 0.00 44.47 4.26
2485 2704 3.120060 GCTCAATCAACAAACGAGCTGAT 60.120 43.478 0.00 0.00 44.47 2.90
2486 2705 4.645956 CTCAATCAACAAACGAGCTGATC 58.354 43.478 0.00 0.00 0.00 2.92
2487 2706 4.318332 TCAATCAACAAACGAGCTGATCT 58.682 39.130 0.00 0.00 0.00 2.75
2488 2707 4.756642 TCAATCAACAAACGAGCTGATCTT 59.243 37.500 0.00 0.00 0.00 2.40
2489 2708 4.675190 ATCAACAAACGAGCTGATCTTG 57.325 40.909 0.00 0.00 0.00 3.02
2490 2709 3.727726 TCAACAAACGAGCTGATCTTGA 58.272 40.909 0.00 0.00 0.00 3.02
2491 2710 3.742882 TCAACAAACGAGCTGATCTTGAG 59.257 43.478 0.00 0.00 0.00 3.02
2492 2711 2.072298 ACAAACGAGCTGATCTTGAGC 58.928 47.619 0.00 0.00 36.65 4.26
2501 2720 4.197750 AGCTGATCTTGAGCTAACATTGG 58.802 43.478 4.30 0.00 45.17 3.16
2502 2721 3.243002 GCTGATCTTGAGCTAACATTGGC 60.243 47.826 0.00 0.00 33.37 4.52
2508 2727 3.071580 AGCTAACATTGGCTCGCTC 57.928 52.632 0.00 0.00 41.45 5.03
2509 2728 0.807667 AGCTAACATTGGCTCGCTCG 60.808 55.000 0.00 0.00 41.45 5.03
2510 2729 0.806102 GCTAACATTGGCTCGCTCGA 60.806 55.000 0.00 0.00 0.00 4.04
2511 2730 1.858091 CTAACATTGGCTCGCTCGAT 58.142 50.000 0.00 0.00 0.00 3.59
2512 2731 2.205074 CTAACATTGGCTCGCTCGATT 58.795 47.619 0.00 0.00 0.00 3.34
2513 2732 1.009829 AACATTGGCTCGCTCGATTC 58.990 50.000 0.00 0.00 0.00 2.52
2514 2733 0.176680 ACATTGGCTCGCTCGATTCT 59.823 50.000 0.00 0.00 0.00 2.40
2515 2734 1.409064 ACATTGGCTCGCTCGATTCTA 59.591 47.619 0.00 0.00 0.00 2.10
2516 2735 2.057316 CATTGGCTCGCTCGATTCTAG 58.943 52.381 0.00 0.00 0.00 2.43
2517 2736 0.249073 TTGGCTCGCTCGATTCTAGC 60.249 55.000 0.20 0.20 36.60 3.42
2518 2737 1.103987 TGGCTCGCTCGATTCTAGCT 61.104 55.000 8.37 0.00 37.85 3.32
2519 2738 0.386731 GGCTCGCTCGATTCTAGCTC 60.387 60.000 8.37 0.00 37.85 4.09
2520 2739 0.724453 GCTCGCTCGATTCTAGCTCG 60.724 60.000 8.37 7.89 37.85 5.03
2521 2740 0.862490 CTCGCTCGATTCTAGCTCGA 59.138 55.000 14.09 14.09 42.44 4.04
2522 2741 1.463056 CTCGCTCGATTCTAGCTCGAT 59.537 52.381 14.88 0.00 43.53 3.59
2523 2742 2.668945 CTCGCTCGATTCTAGCTCGATA 59.331 50.000 14.88 6.17 43.53 2.92
2524 2743 3.263261 TCGCTCGATTCTAGCTCGATAT 58.737 45.455 14.88 0.00 43.53 1.63
2525 2744 3.307512 TCGCTCGATTCTAGCTCGATATC 59.692 47.826 14.88 0.00 43.53 1.63
2526 2745 3.603379 GCTCGATTCTAGCTCGATATCG 58.397 50.000 19.14 19.14 43.53 2.92
2527 2746 3.062909 GCTCGATTCTAGCTCGATATCGT 59.937 47.826 23.61 8.39 43.53 3.73
2528 2747 4.268167 GCTCGATTCTAGCTCGATATCGTA 59.732 45.833 23.61 9.10 43.53 3.43
2529 2748 5.050634 GCTCGATTCTAGCTCGATATCGTAT 60.051 44.000 23.61 13.42 43.53 3.06
2530 2749 6.144241 GCTCGATTCTAGCTCGATATCGTATA 59.856 42.308 23.61 13.79 43.53 1.47
2531 2750 7.148705 GCTCGATTCTAGCTCGATATCGTATAT 60.149 40.741 23.61 11.49 43.53 0.86
2532 2751 9.344309 CTCGATTCTAGCTCGATATCGTATATA 57.656 37.037 23.61 11.95 43.53 0.86
2533 2752 9.688592 TCGATTCTAGCTCGATATCGTATATAA 57.311 33.333 23.61 13.54 40.01 0.98
2624 2843 8.927675 TTTTTCTCCATTTTACCTACTAGCAA 57.072 30.769 0.00 0.00 0.00 3.91
2625 2844 8.927675 TTTTCTCCATTTTACCTACTAGCAAA 57.072 30.769 0.00 0.00 0.00 3.68
2626 2845 7.916914 TTCTCCATTTTACCTACTAGCAAAC 57.083 36.000 0.00 0.00 0.00 2.93
2627 2846 7.011499 TCTCCATTTTACCTACTAGCAAACA 57.989 36.000 0.00 0.00 0.00 2.83
2628 2847 7.630082 TCTCCATTTTACCTACTAGCAAACAT 58.370 34.615 0.00 0.00 0.00 2.71
2629 2848 7.552687 TCTCCATTTTACCTACTAGCAAACATG 59.447 37.037 0.00 0.00 0.00 3.21
2630 2849 7.398829 TCCATTTTACCTACTAGCAAACATGA 58.601 34.615 0.00 0.00 0.00 3.07
2631 2850 7.885922 TCCATTTTACCTACTAGCAAACATGAA 59.114 33.333 0.00 0.00 0.00 2.57
2632 2851 8.519526 CCATTTTACCTACTAGCAAACATGAAA 58.480 33.333 0.00 0.00 0.00 2.69
2633 2852 9.559958 CATTTTACCTACTAGCAAACATGAAAG 57.440 33.333 0.00 0.00 0.00 2.62
2634 2853 6.737254 TTACCTACTAGCAAACATGAAAGC 57.263 37.500 0.00 0.00 0.00 3.51
2635 2854 4.911390 ACCTACTAGCAAACATGAAAGCT 58.089 39.130 0.00 7.73 40.92 3.74
2636 2855 5.316987 ACCTACTAGCAAACATGAAAGCTT 58.683 37.500 13.77 0.00 38.47 3.74
2637 2856 6.472887 ACCTACTAGCAAACATGAAAGCTTA 58.527 36.000 13.77 0.00 38.47 3.09
2638 2857 6.940298 ACCTACTAGCAAACATGAAAGCTTAA 59.060 34.615 13.77 0.00 38.47 1.85
2639 2858 7.611855 ACCTACTAGCAAACATGAAAGCTTAAT 59.388 33.333 13.77 0.00 38.47 1.40
2640 2859 8.462016 CCTACTAGCAAACATGAAAGCTTAATT 58.538 33.333 13.77 0.00 38.47 1.40
2643 2862 9.846248 ACTAGCAAACATGAAAGCTTAATTAAG 57.154 29.630 19.08 19.08 38.47 1.85
2660 2879 9.813080 CTTAATTAAGCACGGAGATAATTTAGC 57.187 33.333 12.15 0.00 32.09 3.09
2661 2880 7.801716 AATTAAGCACGGAGATAATTTAGCA 57.198 32.000 0.00 0.00 0.00 3.49
2662 2881 7.986085 ATTAAGCACGGAGATAATTTAGCAT 57.014 32.000 0.00 0.00 0.00 3.79
2663 2882 5.931441 AAGCACGGAGATAATTTAGCATC 57.069 39.130 0.00 0.00 0.00 3.91
2664 2883 4.960938 AGCACGGAGATAATTTAGCATCA 58.039 39.130 0.00 0.00 0.00 3.07
2665 2884 5.368145 AGCACGGAGATAATTTAGCATCAA 58.632 37.500 0.00 0.00 0.00 2.57
2666 2885 6.000219 AGCACGGAGATAATTTAGCATCAAT 59.000 36.000 0.00 0.00 0.00 2.57
2667 2886 7.161404 AGCACGGAGATAATTTAGCATCAATA 58.839 34.615 0.00 0.00 0.00 1.90
2668 2887 7.826252 AGCACGGAGATAATTTAGCATCAATAT 59.174 33.333 0.00 0.00 0.00 1.28
2669 2888 7.907045 GCACGGAGATAATTTAGCATCAATATG 59.093 37.037 0.00 0.00 36.09 1.78
2670 2889 8.393366 CACGGAGATAATTTAGCATCAATATGG 58.607 37.037 0.00 0.00 33.38 2.74
2671 2890 8.103305 ACGGAGATAATTTAGCATCAATATGGT 58.897 33.333 0.00 0.00 45.54 3.55
2672 2891 9.599866 CGGAGATAATTTAGCATCAATATGGTA 57.400 33.333 0.00 0.00 41.96 3.25
2678 2897 8.621532 AATTTAGCATCAATATGGTATGTCGT 57.378 30.769 0.00 0.00 43.62 4.34
2679 2898 7.652300 TTTAGCATCAATATGGTATGTCGTC 57.348 36.000 0.00 0.00 43.62 4.20
2680 2899 5.213891 AGCATCAATATGGTATGTCGTCA 57.786 39.130 0.00 0.00 41.96 4.35
2681 2900 5.233225 AGCATCAATATGGTATGTCGTCAG 58.767 41.667 0.00 0.00 41.96 3.51
2682 2901 4.143030 GCATCAATATGGTATGTCGTCAGC 60.143 45.833 0.00 0.00 33.38 4.26
2683 2902 3.990092 TCAATATGGTATGTCGTCAGCC 58.010 45.455 0.45 0.45 0.00 4.85
2684 2903 2.724977 ATATGGTATGTCGTCAGCCG 57.275 50.000 0.00 0.00 38.13 5.52
2685 2904 1.395635 TATGGTATGTCGTCAGCCGT 58.604 50.000 6.17 6.17 37.94 5.68
2686 2905 0.535335 ATGGTATGTCGTCAGCCGTT 59.465 50.000 0.00 0.00 37.94 4.44
2687 2906 0.319083 TGGTATGTCGTCAGCCGTTT 59.681 50.000 0.00 0.00 37.94 3.60
2688 2907 0.719465 GGTATGTCGTCAGCCGTTTG 59.281 55.000 0.00 0.00 37.94 2.93
2689 2908 1.425412 GTATGTCGTCAGCCGTTTGT 58.575 50.000 0.00 0.00 37.94 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.131972 TCTCTTTCCCTCAACTCAAATGAT 57.868 37.500 0.00 0.00 0.00 2.45
1 2 5.072329 ACTCTCTTTCCCTCAACTCAAATGA 59.928 40.000 0.00 0.00 0.00 2.57
50 51 3.003897 GTGGGTGTAGAACATTCGCAAAA 59.996 43.478 0.00 0.00 0.00 2.44
51 52 2.550606 GTGGGTGTAGAACATTCGCAAA 59.449 45.455 0.00 0.00 0.00 3.68
52 53 2.147958 GTGGGTGTAGAACATTCGCAA 58.852 47.619 0.00 0.00 0.00 4.85
53 54 1.609580 GGTGGGTGTAGAACATTCGCA 60.610 52.381 0.00 0.00 0.00 5.10
54 55 1.084289 GGTGGGTGTAGAACATTCGC 58.916 55.000 0.00 0.00 0.00 4.70
56 57 3.434940 AAGGGTGGGTGTAGAACATTC 57.565 47.619 0.00 0.00 0.00 2.67
57 58 3.895704 AAAGGGTGGGTGTAGAACATT 57.104 42.857 0.00 0.00 0.00 2.71
58 59 3.895704 AAAAGGGTGGGTGTAGAACAT 57.104 42.857 0.00 0.00 0.00 2.71
59 60 3.673543 AAAAAGGGTGGGTGTAGAACA 57.326 42.857 0.00 0.00 0.00 3.18
101 102 9.726438 TCCCACAAAGTTTCAGATTTTTAAAAA 57.274 25.926 15.38 15.38 0.00 1.94
102 103 9.726438 TTCCCACAAAGTTTCAGATTTTTAAAA 57.274 25.926 0.00 0.00 0.00 1.52
103 104 9.898152 ATTCCCACAAAGTTTCAGATTTTTAAA 57.102 25.926 0.00 0.00 0.00 1.52
104 105 9.323985 CATTCCCACAAAGTTTCAGATTTTTAA 57.676 29.630 0.00 0.00 0.00 1.52
105 106 8.700051 TCATTCCCACAAAGTTTCAGATTTTTA 58.300 29.630 0.00 0.00 0.00 1.52
123 124 6.608539 AACATTTGTTGATGATCATTCCCA 57.391 33.333 10.14 0.14 36.80 4.37
137 138 9.768662 AATTTGCAAATCTCTCTAACATTTGTT 57.231 25.926 24.28 1.22 38.98 2.83
181 182 1.919240 TTTGTGTAGAGCTCCTCGGA 58.081 50.000 10.93 0.00 35.36 4.55
207 208 7.057903 CGTGTACGTACATTTTGAGTGATTTTG 59.942 37.037 29.58 2.68 38.63 2.44
257 261 8.816894 TCATCAGAGGAGAACTGTACTATTTTT 58.183 33.333 0.00 0.00 36.81 1.94
263 267 4.667573 TGTCATCAGAGGAGAACTGTACT 58.332 43.478 0.00 0.00 36.81 2.73
284 288 3.529533 TGCCAAGTTTTGTGGTCAAATG 58.470 40.909 0.00 0.00 42.14 2.32
294 298 2.310538 AGAGAGGGTTGCCAAGTTTTG 58.689 47.619 0.00 0.00 0.00 2.44
307 311 4.566004 TCATCAACAAACGTTAGAGAGGG 58.434 43.478 0.00 0.00 0.00 4.30
409 414 3.271153 ACTAGTGGTTGAACCCTACCT 57.729 47.619 12.53 5.16 37.50 3.08
412 417 3.328637 GGGAAACTAGTGGTTGAACCCTA 59.671 47.826 12.53 11.40 40.24 3.53
474 479 9.654417 CAAGTGGAAAATTTTGTCAATGAAATC 57.346 29.630 8.47 0.00 0.00 2.17
568 573 7.558444 TCCCGGTCAAAATAGTTAAGCAATTAT 59.442 33.333 0.00 0.00 0.00 1.28
569 574 6.885376 TCCCGGTCAAAATAGTTAAGCAATTA 59.115 34.615 0.00 0.00 0.00 1.40
577 582 5.486735 TTGTCTCCCGGTCAAAATAGTTA 57.513 39.130 0.00 0.00 0.00 2.24
580 585 4.513442 TGATTGTCTCCCGGTCAAAATAG 58.487 43.478 0.00 0.00 0.00 1.73
591 596 6.825721 AGTACATTCTGAAATGATTGTCTCCC 59.174 38.462 5.22 0.00 44.25 4.30
655 660 7.278875 TGGGCTTTTGACTTTCAATGTAAATT 58.721 30.769 0.00 0.00 36.11 1.82
676 681 2.825532 ACATTTGTTCTGTACCATGGGC 59.174 45.455 18.09 9.20 0.00 5.36
688 693 9.520204 CCTGATATTAAATCACCACATTTGTTC 57.480 33.333 0.00 0.00 0.00 3.18
695 700 8.426489 GGTAGTACCTGATATTAAATCACCACA 58.574 37.037 12.41 0.00 34.73 4.17
696 701 8.828688 GGTAGTACCTGATATTAAATCACCAC 57.171 38.462 12.41 0.00 34.73 4.16
722 727 4.832248 AGCGTCTTACATTTTGAGATGGA 58.168 39.130 0.00 0.00 0.00 3.41
725 730 8.443937 GTCTAAAAGCGTCTTACATTTTGAGAT 58.556 33.333 0.00 0.00 0.00 2.75
726 731 7.656137 AGTCTAAAAGCGTCTTACATTTTGAGA 59.344 33.333 0.00 0.00 0.00 3.27
812 977 6.166279 CCATGCATACAGAGGATAATACGTT 58.834 40.000 0.00 0.00 0.00 3.99
817 982 9.592196 AAAATAACCATGCATACAGAGGATAAT 57.408 29.630 0.00 0.00 0.00 1.28
819 984 8.995027 AAAAATAACCATGCATACAGAGGATA 57.005 30.769 0.00 0.00 0.00 2.59
845 1010 7.369803 AGAATATTAAGGATGTGCATTAGCG 57.630 36.000 0.00 0.00 46.23 4.26
852 1017 9.455847 GTGATGAAAAGAATATTAAGGATGTGC 57.544 33.333 0.00 0.00 0.00 4.57
948 1113 1.251251 ACAATGAACAAGCTGGGCTC 58.749 50.000 0.00 0.00 38.25 4.70
980 1145 0.394192 GCTTCCCAGCAAGCCTTTTT 59.606 50.000 0.00 0.00 46.49 1.94
981 1146 2.052779 GCTTCCCAGCAAGCCTTTT 58.947 52.632 0.00 0.00 46.49 2.27
982 1147 3.783165 GCTTCCCAGCAAGCCTTT 58.217 55.556 0.00 0.00 46.49 3.11
991 1156 0.037975 GTTGTTGGCATGCTTCCCAG 60.038 55.000 18.92 0.00 31.73 4.45
992 1157 1.470996 GGTTGTTGGCATGCTTCCCA 61.471 55.000 18.92 3.67 0.00 4.37
1250 1445 0.735287 GTTGTACGCGGAGAAGGACC 60.735 60.000 12.47 0.00 0.00 4.46
1323 1518 1.215647 CAGAGGCCTGGTGTACGTC 59.784 63.158 12.00 0.00 36.77 4.34
1416 1611 0.971447 GGTACGCCTCCCTCTTGAGT 60.971 60.000 0.00 0.00 0.00 3.41
1509 1704 1.324740 CCATCTCGAACACCCCCGTA 61.325 60.000 0.00 0.00 0.00 4.02
1618 1813 3.771160 GACGACATCAGGGCCCGT 61.771 66.667 18.44 8.20 36.08 5.28
1690 1897 2.030363 GGATCGGCAACACACAAATTCA 60.030 45.455 0.00 0.00 0.00 2.57
1808 2018 5.286082 CCTGCTCAATAACGTTGCAATAAAC 59.714 40.000 11.99 0.00 33.07 2.01
1842 2052 6.655062 CGTACAACAGCAAATCAGTTCTTAA 58.345 36.000 0.00 0.00 0.00 1.85
1858 2068 6.238842 GGGAGAAGTAGTATATGCGTACAACA 60.239 42.308 0.00 0.00 0.00 3.33
1990 2206 1.264020 TGCGTTCATTGAAGTGAGTGC 59.736 47.619 0.00 0.00 33.39 4.40
1995 2211 0.041400 TGCGTGCGTTCATTGAAGTG 60.041 50.000 0.00 0.00 0.00 3.16
1996 2212 0.041312 GTGCGTGCGTTCATTGAAGT 60.041 50.000 0.00 0.00 0.00 3.01
1997 2213 1.054348 CGTGCGTGCGTTCATTGAAG 61.054 55.000 0.00 0.00 0.00 3.02
1998 2214 1.083080 CGTGCGTGCGTTCATTGAA 60.083 52.632 0.00 0.00 0.00 2.69
1999 2215 2.548787 CGTGCGTGCGTTCATTGA 59.451 55.556 0.00 0.00 0.00 2.57
2000 2216 3.158813 GCGTGCGTGCGTTCATTG 61.159 61.111 3.11 0.00 0.00 2.82
2001 2217 3.644976 TGCGTGCGTGCGTTCATT 61.645 55.556 3.11 0.00 37.81 2.57
2002 2218 4.368808 GTGCGTGCGTGCGTTCAT 62.369 61.111 3.11 0.00 37.81 2.57
2011 2227 2.306255 ATAAGGGTAGGGTGCGTGCG 62.306 60.000 0.00 0.00 0.00 5.34
2012 2228 0.754472 TATAAGGGTAGGGTGCGTGC 59.246 55.000 0.00 0.00 0.00 5.34
2013 2229 2.805657 GCTTATAAGGGTAGGGTGCGTG 60.806 54.545 14.28 0.00 0.00 5.34
2014 2230 1.415289 GCTTATAAGGGTAGGGTGCGT 59.585 52.381 14.28 0.00 0.00 5.24
2015 2231 1.604693 CGCTTATAAGGGTAGGGTGCG 60.605 57.143 18.81 8.18 34.59 5.34
2016 2232 1.690352 TCGCTTATAAGGGTAGGGTGC 59.310 52.381 24.13 3.89 39.69 5.01
2017 2233 3.228453 TCTCGCTTATAAGGGTAGGGTG 58.772 50.000 24.13 11.73 39.69 4.61
2018 2234 3.607490 TCTCGCTTATAAGGGTAGGGT 57.393 47.619 24.13 0.00 39.69 4.34
2019 2235 5.125739 CAGTATCTCGCTTATAAGGGTAGGG 59.874 48.000 24.13 14.84 39.69 3.53
2020 2236 5.944599 TCAGTATCTCGCTTATAAGGGTAGG 59.055 44.000 24.13 16.70 39.69 3.18
2021 2237 6.403855 GCTCAGTATCTCGCTTATAAGGGTAG 60.404 46.154 24.13 19.65 39.69 3.18
2022 2238 5.415077 GCTCAGTATCTCGCTTATAAGGGTA 59.585 44.000 24.13 16.10 39.69 3.69
2023 2239 4.218852 GCTCAGTATCTCGCTTATAAGGGT 59.781 45.833 24.13 11.56 39.69 4.34
2024 2240 4.381079 GGCTCAGTATCTCGCTTATAAGGG 60.381 50.000 20.54 20.54 40.04 3.95
2025 2241 4.673061 CGGCTCAGTATCTCGCTTATAAGG 60.673 50.000 14.28 4.84 0.00 2.69
2026 2242 4.154375 TCGGCTCAGTATCTCGCTTATAAG 59.846 45.833 8.20 8.20 0.00 1.73
2027 2243 4.070009 TCGGCTCAGTATCTCGCTTATAA 58.930 43.478 0.00 0.00 0.00 0.98
2028 2244 3.436015 GTCGGCTCAGTATCTCGCTTATA 59.564 47.826 0.00 0.00 0.00 0.98
2029 2245 2.226912 GTCGGCTCAGTATCTCGCTTAT 59.773 50.000 0.00 0.00 0.00 1.73
2030 2246 1.602851 GTCGGCTCAGTATCTCGCTTA 59.397 52.381 0.00 0.00 0.00 3.09
2031 2247 0.382515 GTCGGCTCAGTATCTCGCTT 59.617 55.000 0.00 0.00 0.00 4.68
2032 2248 0.748367 TGTCGGCTCAGTATCTCGCT 60.748 55.000 0.00 0.00 0.00 4.93
2033 2249 0.592754 GTGTCGGCTCAGTATCTCGC 60.593 60.000 0.00 0.00 0.00 5.03
2034 2250 0.733150 TGTGTCGGCTCAGTATCTCG 59.267 55.000 0.00 0.00 0.00 4.04
2035 2251 2.941453 TTGTGTCGGCTCAGTATCTC 57.059 50.000 0.00 0.00 0.00 2.75
2036 2252 4.830046 AGATATTGTGTCGGCTCAGTATCT 59.170 41.667 23.31 23.31 40.28 1.98
2037 2253 5.127693 AGATATTGTGTCGGCTCAGTATC 57.872 43.478 20.44 20.44 37.72 2.24
2038 2254 5.069119 TCAAGATATTGTGTCGGCTCAGTAT 59.931 40.000 6.79 6.79 0.00 2.12
2039 2255 4.401202 TCAAGATATTGTGTCGGCTCAGTA 59.599 41.667 0.00 0.00 0.00 2.74
2040 2256 3.195610 TCAAGATATTGTGTCGGCTCAGT 59.804 43.478 0.00 0.00 0.00 3.41
2041 2257 3.785486 TCAAGATATTGTGTCGGCTCAG 58.215 45.455 0.00 0.00 0.00 3.35
2042 2258 3.447229 TCTCAAGATATTGTGTCGGCTCA 59.553 43.478 0.00 0.00 0.00 4.26
2043 2259 4.046938 TCTCAAGATATTGTGTCGGCTC 57.953 45.455 0.00 0.00 0.00 4.70
2044 2260 4.679373 ATCTCAAGATATTGTGTCGGCT 57.321 40.909 0.00 0.00 32.01 5.52
2045 2261 4.811024 TCAATCTCAAGATATTGTGTCGGC 59.189 41.667 0.00 0.00 35.16 5.54
2046 2262 8.593492 TTATCAATCTCAAGATATTGTGTCGG 57.407 34.615 0.00 0.00 35.16 4.79
2065 2281 9.516314 CTATGAGACGTATGTTGACTTTATCAA 57.484 33.333 0.00 0.00 45.39 2.57
2066 2282 8.683615 ACTATGAGACGTATGTTGACTTTATCA 58.316 33.333 0.00 0.00 34.65 2.15
2067 2283 9.517609 AACTATGAGACGTATGTTGACTTTATC 57.482 33.333 0.00 0.00 0.00 1.75
2068 2284 9.302345 CAACTATGAGACGTATGTTGACTTTAT 57.698 33.333 5.46 0.00 37.53 1.40
2069 2285 8.517056 TCAACTATGAGACGTATGTTGACTTTA 58.483 33.333 9.06 0.00 38.81 1.85
2070 2286 7.375834 TCAACTATGAGACGTATGTTGACTTT 58.624 34.615 9.06 0.00 38.81 2.66
2071 2287 6.920817 TCAACTATGAGACGTATGTTGACTT 58.079 36.000 9.06 0.00 38.81 3.01
2072 2288 6.510879 TCAACTATGAGACGTATGTTGACT 57.489 37.500 9.06 0.00 38.81 3.41
2073 2289 6.972901 TCATCAACTATGAGACGTATGTTGAC 59.027 38.462 13.81 0.00 43.85 3.18
2074 2290 7.095695 TCATCAACTATGAGACGTATGTTGA 57.904 36.000 13.87 13.87 44.70 3.18
2086 2302 4.705023 TGGAGACGTTCTCATCAACTATGA 59.295 41.667 14.26 0.00 45.12 2.15
2087 2303 4.998788 TGGAGACGTTCTCATCAACTATG 58.001 43.478 14.26 0.00 45.12 2.23
2088 2304 5.221342 GGATGGAGACGTTCTCATCAACTAT 60.221 44.000 19.85 0.62 45.12 2.12
2089 2305 4.098044 GGATGGAGACGTTCTCATCAACTA 59.902 45.833 19.85 0.00 45.12 2.24
2090 2306 3.118956 GGATGGAGACGTTCTCATCAACT 60.119 47.826 19.85 0.00 45.12 3.16
2091 2307 3.190874 GGATGGAGACGTTCTCATCAAC 58.809 50.000 19.85 9.08 45.12 3.18
2092 2308 2.831526 TGGATGGAGACGTTCTCATCAA 59.168 45.455 19.85 11.36 45.12 2.57
2093 2309 2.166459 GTGGATGGAGACGTTCTCATCA 59.834 50.000 19.85 10.32 45.12 3.07
2094 2310 2.428890 AGTGGATGGAGACGTTCTCATC 59.571 50.000 14.26 14.03 45.12 2.92
2150 2366 6.019779 TGGCACTGGTGTTTGTATTTTATC 57.980 37.500 2.64 0.00 0.00 1.75
2179 2395 0.474184 CACACTGGGGTTCAAGTCCT 59.526 55.000 0.00 0.00 0.00 3.85
2180 2396 0.182775 ACACACTGGGGTTCAAGTCC 59.817 55.000 0.00 0.00 0.00 3.85
2181 2397 2.052782 AACACACTGGGGTTCAAGTC 57.947 50.000 0.00 0.00 0.00 3.01
2182 2398 2.508300 ACTAACACACTGGGGTTCAAGT 59.492 45.455 0.00 0.00 0.00 3.16
2183 2399 3.208747 ACTAACACACTGGGGTTCAAG 57.791 47.619 0.00 0.00 0.00 3.02
2184 2400 3.655615 AACTAACACACTGGGGTTCAA 57.344 42.857 0.00 0.00 0.00 2.69
2185 2401 3.054287 TGAAACTAACACACTGGGGTTCA 60.054 43.478 0.00 0.00 0.00 3.18
2186 2402 3.314357 GTGAAACTAACACACTGGGGTTC 59.686 47.826 0.00 0.00 38.05 3.62
2187 2403 3.284617 GTGAAACTAACACACTGGGGTT 58.715 45.455 0.00 0.00 38.05 4.11
2188 2404 2.422377 GGTGAAACTAACACACTGGGGT 60.422 50.000 0.00 0.00 39.65 4.95
2189 2405 2.227194 GGTGAAACTAACACACTGGGG 58.773 52.381 0.00 0.00 39.65 4.96
2190 2406 2.616842 GTGGTGAAACTAACACACTGGG 59.383 50.000 0.00 0.00 39.65 4.45
2191 2407 3.275143 TGTGGTGAAACTAACACACTGG 58.725 45.455 0.00 0.00 38.76 4.00
2192 2408 4.201910 CCTTGTGGTGAAACTAACACACTG 60.202 45.833 0.00 0.00 42.84 3.66
2193 2409 3.945285 CCTTGTGGTGAAACTAACACACT 59.055 43.478 0.00 0.00 42.84 3.55
2194 2410 3.942748 TCCTTGTGGTGAAACTAACACAC 59.057 43.478 0.00 0.00 42.84 3.82
2195 2411 4.196193 CTCCTTGTGGTGAAACTAACACA 58.804 43.478 0.00 0.00 41.59 3.72
2196 2412 3.003378 GCTCCTTGTGGTGAAACTAACAC 59.997 47.826 0.00 0.00 34.12 3.32
2197 2413 3.211045 GCTCCTTGTGGTGAAACTAACA 58.789 45.455 0.00 0.00 36.74 2.41
2198 2414 2.552743 GGCTCCTTGTGGTGAAACTAAC 59.447 50.000 0.00 0.00 36.74 2.34
2199 2415 2.441750 AGGCTCCTTGTGGTGAAACTAA 59.558 45.455 0.00 0.00 36.74 2.24
2200 2416 2.054799 AGGCTCCTTGTGGTGAAACTA 58.945 47.619 0.00 0.00 36.74 2.24
2201 2417 0.846693 AGGCTCCTTGTGGTGAAACT 59.153 50.000 0.00 0.00 36.74 2.66
2202 2418 0.954452 CAGGCTCCTTGTGGTGAAAC 59.046 55.000 0.00 0.00 34.23 2.78
2203 2419 0.843309 TCAGGCTCCTTGTGGTGAAA 59.157 50.000 0.00 0.00 34.23 2.69
2204 2420 0.397941 CTCAGGCTCCTTGTGGTGAA 59.602 55.000 0.00 0.00 34.23 3.18
2205 2421 2.061220 CTCAGGCTCCTTGTGGTGA 58.939 57.895 0.00 0.00 34.23 4.02
2206 2422 1.673665 GCTCAGGCTCCTTGTGGTG 60.674 63.158 0.00 0.00 35.22 4.17
2207 2423 2.753029 GCTCAGGCTCCTTGTGGT 59.247 61.111 0.00 0.00 35.22 4.16
2225 2441 2.017783 GCAAACACGTCCGAGCGTA 61.018 57.895 4.10 0.00 43.83 4.42
2226 2442 3.335534 GCAAACACGTCCGAGCGT 61.336 61.111 0.00 0.00 46.88 5.07
2227 2443 2.667318 ATGCAAACACGTCCGAGCG 61.667 57.895 0.00 0.00 37.94 5.03
2231 2450 1.795872 TCTAACATGCAAACACGTCCG 59.204 47.619 0.00 0.00 0.00 4.79
2241 2460 8.955388 TCTGCATTAAACTATTTCTAACATGCA 58.045 29.630 0.00 0.00 38.28 3.96
2280 2499 7.335627 TGATGACCCCAAATAATCCGATATAC 58.664 38.462 0.00 0.00 0.00 1.47
2287 2506 9.927081 AAGATATATGATGACCCCAAATAATCC 57.073 33.333 0.00 0.00 0.00 3.01
2323 2542 8.208718 TCTACAACCAATAGAAAAATCATCCG 57.791 34.615 0.00 0.00 0.00 4.18
2370 2589 0.692476 TTGCAGCCCTATGTGTGAGT 59.308 50.000 0.00 0.00 0.00 3.41
2371 2590 1.065926 TCTTGCAGCCCTATGTGTGAG 60.066 52.381 0.00 0.00 0.00 3.51
2372 2591 0.983467 TCTTGCAGCCCTATGTGTGA 59.017 50.000 0.00 0.00 0.00 3.58
2373 2592 1.825090 TTCTTGCAGCCCTATGTGTG 58.175 50.000 0.00 0.00 0.00 3.82
2374 2593 2.584835 TTTCTTGCAGCCCTATGTGT 57.415 45.000 0.00 0.00 0.00 3.72
2375 2594 3.256631 AGTTTTTCTTGCAGCCCTATGTG 59.743 43.478 0.00 0.00 0.00 3.21
2376 2595 3.500343 AGTTTTTCTTGCAGCCCTATGT 58.500 40.909 0.00 0.00 0.00 2.29
2377 2596 3.426695 CGAGTTTTTCTTGCAGCCCTATG 60.427 47.826 0.00 0.00 0.00 2.23
2378 2597 2.749621 CGAGTTTTTCTTGCAGCCCTAT 59.250 45.455 0.00 0.00 0.00 2.57
2379 2598 2.151202 CGAGTTTTTCTTGCAGCCCTA 58.849 47.619 0.00 0.00 0.00 3.53
2380 2599 0.954452 CGAGTTTTTCTTGCAGCCCT 59.046 50.000 0.00 0.00 0.00 5.19
2381 2600 0.951558 TCGAGTTTTTCTTGCAGCCC 59.048 50.000 0.00 0.00 0.00 5.19
2382 2601 1.873591 TCTCGAGTTTTTCTTGCAGCC 59.126 47.619 13.13 0.00 0.00 4.85
2383 2602 2.545946 AGTCTCGAGTTTTTCTTGCAGC 59.454 45.455 13.13 0.00 0.00 5.25
2384 2603 4.034510 ACAAGTCTCGAGTTTTTCTTGCAG 59.965 41.667 22.50 10.74 36.69 4.41
2385 2604 3.938963 ACAAGTCTCGAGTTTTTCTTGCA 59.061 39.130 22.50 0.00 36.69 4.08
2386 2605 4.034048 TCACAAGTCTCGAGTTTTTCTTGC 59.966 41.667 22.50 0.00 36.69 4.01
2387 2606 5.718649 TCACAAGTCTCGAGTTTTTCTTG 57.281 39.130 13.13 19.03 38.40 3.02
2388 2607 4.271291 GCTCACAAGTCTCGAGTTTTTCTT 59.729 41.667 13.13 7.81 0.00 2.52
2389 2608 3.804873 GCTCACAAGTCTCGAGTTTTTCT 59.195 43.478 13.13 2.10 0.00 2.52
2390 2609 3.804873 AGCTCACAAGTCTCGAGTTTTTC 59.195 43.478 13.13 0.00 0.00 2.29
2391 2610 3.557595 CAGCTCACAAGTCTCGAGTTTTT 59.442 43.478 13.13 2.78 0.00 1.94
2392 2611 3.126831 CAGCTCACAAGTCTCGAGTTTT 58.873 45.455 13.13 5.36 0.00 2.43
2393 2612 2.748605 CAGCTCACAAGTCTCGAGTTT 58.251 47.619 13.13 5.74 0.00 2.66
2394 2613 1.604185 GCAGCTCACAAGTCTCGAGTT 60.604 52.381 13.13 0.00 0.00 3.01
2395 2614 0.038709 GCAGCTCACAAGTCTCGAGT 60.039 55.000 13.13 0.00 0.00 4.18
2396 2615 0.243365 AGCAGCTCACAAGTCTCGAG 59.757 55.000 5.93 5.93 0.00 4.04
2397 2616 0.242286 GAGCAGCTCACAAGTCTCGA 59.758 55.000 18.17 0.00 0.00 4.04
2398 2617 1.069924 CGAGCAGCTCACAAGTCTCG 61.070 60.000 22.49 1.78 34.93 4.04
2399 2618 0.242286 TCGAGCAGCTCACAAGTCTC 59.758 55.000 22.49 0.00 0.00 3.36
2400 2619 0.243365 CTCGAGCAGCTCACAAGTCT 59.757 55.000 22.49 0.00 0.00 3.24
2401 2620 0.242286 TCTCGAGCAGCTCACAAGTC 59.758 55.000 22.49 0.00 0.00 3.01
2402 2621 0.894141 ATCTCGAGCAGCTCACAAGT 59.106 50.000 22.49 1.05 0.00 3.16
2403 2622 1.659601 CAATCTCGAGCAGCTCACAAG 59.340 52.381 22.49 15.14 0.00 3.16
2404 2623 1.273327 TCAATCTCGAGCAGCTCACAA 59.727 47.619 22.49 6.64 0.00 3.33
2405 2624 0.890683 TCAATCTCGAGCAGCTCACA 59.109 50.000 22.49 7.04 0.00 3.58
2406 2625 1.135141 AGTCAATCTCGAGCAGCTCAC 60.135 52.381 22.49 10.60 0.00 3.51
2407 2626 1.133982 GAGTCAATCTCGAGCAGCTCA 59.866 52.381 22.49 8.59 33.25 4.26
2408 2627 1.133982 TGAGTCAATCTCGAGCAGCTC 59.866 52.381 12.94 12.94 45.46 4.09
2409 2628 1.180907 TGAGTCAATCTCGAGCAGCT 58.819 50.000 7.81 0.00 45.46 4.24
2410 2629 2.001812 TTGAGTCAATCTCGAGCAGC 57.998 50.000 7.81 0.00 45.46 5.25
2411 2630 4.687948 TCTTTTTGAGTCAATCTCGAGCAG 59.312 41.667 7.81 0.00 45.46 4.24
2412 2631 4.631131 TCTTTTTGAGTCAATCTCGAGCA 58.369 39.130 7.81 0.00 45.46 4.26
2413 2632 5.597813 TTCTTTTTGAGTCAATCTCGAGC 57.402 39.130 7.81 0.00 45.46 5.03
2414 2633 7.800767 TCATTTCTTTTTGAGTCAATCTCGAG 58.199 34.615 5.93 5.93 45.46 4.04
2415 2634 7.571983 GCTCATTTCTTTTTGAGTCAATCTCGA 60.572 37.037 6.36 0.00 45.46 4.04
2416 2635 6.522510 GCTCATTTCTTTTTGAGTCAATCTCG 59.477 38.462 6.36 0.00 45.46 4.04
2417 2636 7.537991 CAGCTCATTTCTTTTTGAGTCAATCTC 59.462 37.037 6.36 0.00 41.16 2.75
2418 2637 7.230108 TCAGCTCATTTCTTTTTGAGTCAATCT 59.770 33.333 6.36 0.00 41.16 2.40
2419 2638 7.365741 TCAGCTCATTTCTTTTTGAGTCAATC 58.634 34.615 6.36 0.00 41.16 2.67
2420 2639 7.014038 ACTCAGCTCATTTCTTTTTGAGTCAAT 59.986 33.333 6.36 0.00 39.47 2.57
2421 2640 6.319658 ACTCAGCTCATTTCTTTTTGAGTCAA 59.680 34.615 0.08 0.08 39.47 3.18
2422 2641 5.824624 ACTCAGCTCATTTCTTTTTGAGTCA 59.175 36.000 0.00 0.00 39.47 3.41
2423 2642 6.311055 ACTCAGCTCATTTCTTTTTGAGTC 57.689 37.500 0.00 0.00 39.47 3.36
2424 2643 7.663081 TCATACTCAGCTCATTTCTTTTTGAGT 59.337 33.333 8.95 8.95 44.12 3.41
2425 2644 8.037382 TCATACTCAGCTCATTTCTTTTTGAG 57.963 34.615 0.00 0.00 41.84 3.02
2426 2645 7.361542 GCTCATACTCAGCTCATTTCTTTTTGA 60.362 37.037 0.00 0.00 33.75 2.69
2427 2646 6.746364 GCTCATACTCAGCTCATTTCTTTTTG 59.254 38.462 0.00 0.00 33.75 2.44
2428 2647 6.432162 TGCTCATACTCAGCTCATTTCTTTTT 59.568 34.615 0.00 0.00 37.79 1.94
2429 2648 5.942236 TGCTCATACTCAGCTCATTTCTTTT 59.058 36.000 0.00 0.00 37.79 2.27
2430 2649 5.353678 GTGCTCATACTCAGCTCATTTCTTT 59.646 40.000 0.00 0.00 37.79 2.52
2431 2650 4.874966 GTGCTCATACTCAGCTCATTTCTT 59.125 41.667 0.00 0.00 37.79 2.52
2432 2651 4.161942 AGTGCTCATACTCAGCTCATTTCT 59.838 41.667 0.00 0.00 37.79 2.52
2433 2652 4.440880 AGTGCTCATACTCAGCTCATTTC 58.559 43.478 0.00 0.00 37.79 2.17
2434 2653 4.484537 AGTGCTCATACTCAGCTCATTT 57.515 40.909 0.00 0.00 37.79 2.32
2435 2654 4.484537 AAGTGCTCATACTCAGCTCATT 57.515 40.909 0.00 0.00 37.79 2.57
2436 2655 4.484537 AAAGTGCTCATACTCAGCTCAT 57.515 40.909 0.00 0.00 37.79 2.90
2437 2656 3.969287 AAAGTGCTCATACTCAGCTCA 57.031 42.857 0.00 0.00 37.79 4.26
2438 2657 4.453819 ACAAAAAGTGCTCATACTCAGCTC 59.546 41.667 0.00 0.00 37.79 4.09
2439 2658 4.392940 ACAAAAAGTGCTCATACTCAGCT 58.607 39.130 0.00 0.00 37.79 4.24
2440 2659 4.756084 ACAAAAAGTGCTCATACTCAGC 57.244 40.909 0.00 0.00 37.40 4.26
2441 2660 5.641209 AGCTACAAAAAGTGCTCATACTCAG 59.359 40.000 0.00 0.00 31.80 3.35
2442 2661 5.551233 AGCTACAAAAAGTGCTCATACTCA 58.449 37.500 0.00 0.00 31.80 3.41
2443 2662 5.639506 TGAGCTACAAAAAGTGCTCATACTC 59.360 40.000 11.74 0.00 46.54 2.59
2444 2663 5.551233 TGAGCTACAAAAAGTGCTCATACT 58.449 37.500 11.74 0.00 46.54 2.12
2445 2664 5.862924 TGAGCTACAAAAAGTGCTCATAC 57.137 39.130 11.74 0.00 46.54 2.39
2449 2668 5.362556 TGATTGAGCTACAAAAAGTGCTC 57.637 39.130 6.85 6.85 44.49 4.26
2450 2669 5.067674 TGTTGATTGAGCTACAAAAAGTGCT 59.932 36.000 0.00 0.00 42.03 4.40
2451 2670 5.280945 TGTTGATTGAGCTACAAAAAGTGC 58.719 37.500 0.00 0.00 42.03 4.40
2452 2671 7.513505 CGTTTGTTGATTGAGCTACAAAAAGTG 60.514 37.037 10.89 0.86 42.16 3.16
2453 2672 6.472163 CGTTTGTTGATTGAGCTACAAAAAGT 59.528 34.615 10.89 0.00 42.16 2.66
2454 2673 6.690957 TCGTTTGTTGATTGAGCTACAAAAAG 59.309 34.615 10.89 8.92 42.16 2.27
2455 2674 6.556212 TCGTTTGTTGATTGAGCTACAAAAA 58.444 32.000 10.89 3.66 42.16 1.94
2456 2675 6.125327 TCGTTTGTTGATTGAGCTACAAAA 57.875 33.333 10.89 0.00 42.16 2.44
2457 2676 5.743026 TCGTTTGTTGATTGAGCTACAAA 57.257 34.783 6.20 6.20 42.03 2.83
2458 2677 4.319477 GCTCGTTTGTTGATTGAGCTACAA 60.319 41.667 5.34 0.00 46.45 2.41
2459 2678 3.186409 GCTCGTTTGTTGATTGAGCTACA 59.814 43.478 5.34 0.00 46.45 2.74
2460 2679 3.737305 GCTCGTTTGTTGATTGAGCTAC 58.263 45.455 5.34 0.00 46.45 3.58
2462 2681 2.977405 GCTCGTTTGTTGATTGAGCT 57.023 45.000 5.34 0.00 46.45 4.09
2464 2683 4.391216 AGATCAGCTCGTTTGTTGATTGAG 59.609 41.667 0.00 0.00 37.87 3.02
2465 2684 4.318332 AGATCAGCTCGTTTGTTGATTGA 58.682 39.130 0.00 0.00 37.87 2.57
2466 2685 4.675190 AGATCAGCTCGTTTGTTGATTG 57.325 40.909 0.00 0.00 37.87 2.67
2467 2686 4.756642 TCAAGATCAGCTCGTTTGTTGATT 59.243 37.500 0.00 0.00 37.87 2.57
2468 2687 4.318332 TCAAGATCAGCTCGTTTGTTGAT 58.682 39.130 0.00 5.34 39.87 2.57
2469 2688 3.727726 TCAAGATCAGCTCGTTTGTTGA 58.272 40.909 0.00 0.00 0.00 3.18
2470 2689 3.666374 GCTCAAGATCAGCTCGTTTGTTG 60.666 47.826 0.00 0.00 33.75 3.33
2471 2690 2.481952 GCTCAAGATCAGCTCGTTTGTT 59.518 45.455 0.00 0.00 33.75 2.83
2472 2691 2.072298 GCTCAAGATCAGCTCGTTTGT 58.928 47.619 0.00 0.00 33.75 2.83
2473 2692 2.344950 AGCTCAAGATCAGCTCGTTTG 58.655 47.619 0.30 0.00 44.25 2.93
2474 2693 2.758736 AGCTCAAGATCAGCTCGTTT 57.241 45.000 0.30 0.00 44.25 3.60
2475 2694 3.056536 TGTTAGCTCAAGATCAGCTCGTT 60.057 43.478 9.17 0.00 44.25 3.85
2476 2695 2.493675 TGTTAGCTCAAGATCAGCTCGT 59.506 45.455 9.17 0.00 44.25 4.18
2477 2696 3.156511 TGTTAGCTCAAGATCAGCTCG 57.843 47.619 9.17 0.00 44.25 5.03
2478 2697 4.272991 CCAATGTTAGCTCAAGATCAGCTC 59.727 45.833 9.17 0.00 44.25 4.09
2480 2699 3.243002 GCCAATGTTAGCTCAAGATCAGC 60.243 47.826 0.00 0.00 37.12 4.26
2481 2700 4.197750 AGCCAATGTTAGCTCAAGATCAG 58.802 43.478 0.00 0.00 32.71 2.90
2482 2701 4.226427 AGCCAATGTTAGCTCAAGATCA 57.774 40.909 0.00 0.00 32.71 2.92
2490 2709 0.807667 CGAGCGAGCCAATGTTAGCT 60.808 55.000 0.00 0.00 43.55 3.32
2491 2710 0.806102 TCGAGCGAGCCAATGTTAGC 60.806 55.000 0.00 0.00 0.00 3.09
2492 2711 1.858091 ATCGAGCGAGCCAATGTTAG 58.142 50.000 0.00 0.00 0.00 2.34
2493 2712 2.159099 AGAATCGAGCGAGCCAATGTTA 60.159 45.455 0.00 0.00 0.00 2.41
2494 2713 1.009829 GAATCGAGCGAGCCAATGTT 58.990 50.000 0.00 0.00 0.00 2.71
2495 2714 0.176680 AGAATCGAGCGAGCCAATGT 59.823 50.000 0.00 0.00 0.00 2.71
2496 2715 2.057316 CTAGAATCGAGCGAGCCAATG 58.943 52.381 0.00 0.00 0.00 2.82
2497 2716 1.604185 GCTAGAATCGAGCGAGCCAAT 60.604 52.381 10.67 0.00 0.00 3.16
2498 2717 0.249073 GCTAGAATCGAGCGAGCCAA 60.249 55.000 10.67 0.00 0.00 4.52
2499 2718 1.103987 AGCTAGAATCGAGCGAGCCA 61.104 55.000 15.93 0.00 44.98 4.75
2500 2719 0.386731 GAGCTAGAATCGAGCGAGCC 60.387 60.000 15.93 7.38 44.98 4.70
2501 2720 0.724453 CGAGCTAGAATCGAGCGAGC 60.724 60.000 9.59 12.98 44.98 5.03
2502 2721 0.862490 TCGAGCTAGAATCGAGCGAG 59.138 55.000 14.35 7.99 43.79 5.03
2503 2722 2.987752 TCGAGCTAGAATCGAGCGA 58.012 52.632 14.35 0.00 43.79 4.93
2599 2818 8.927675 TTGCTAGTAGGTAAAATGGAGAAAAA 57.072 30.769 0.00 0.00 0.00 1.94
2600 2819 8.789762 GTTTGCTAGTAGGTAAAATGGAGAAAA 58.210 33.333 0.00 0.00 0.00 2.29
2601 2820 7.940137 TGTTTGCTAGTAGGTAAAATGGAGAAA 59.060 33.333 0.00 0.00 0.00 2.52
2602 2821 7.455058 TGTTTGCTAGTAGGTAAAATGGAGAA 58.545 34.615 0.00 0.00 0.00 2.87
2603 2822 7.011499 TGTTTGCTAGTAGGTAAAATGGAGA 57.989 36.000 0.00 0.00 0.00 3.71
2604 2823 7.552687 TCATGTTTGCTAGTAGGTAAAATGGAG 59.447 37.037 0.00 0.00 0.00 3.86
2605 2824 7.398829 TCATGTTTGCTAGTAGGTAAAATGGA 58.601 34.615 0.00 0.00 0.00 3.41
2606 2825 7.624360 TCATGTTTGCTAGTAGGTAAAATGG 57.376 36.000 0.00 0.00 0.00 3.16
2607 2826 9.559958 CTTTCATGTTTGCTAGTAGGTAAAATG 57.440 33.333 0.00 0.00 0.00 2.32
2608 2827 8.244113 GCTTTCATGTTTGCTAGTAGGTAAAAT 58.756 33.333 0.00 0.00 0.00 1.82
2609 2828 7.447238 AGCTTTCATGTTTGCTAGTAGGTAAAA 59.553 33.333 0.00 0.00 33.64 1.52
2610 2829 6.940298 AGCTTTCATGTTTGCTAGTAGGTAAA 59.060 34.615 0.00 0.00 33.64 2.01
2611 2830 6.472887 AGCTTTCATGTTTGCTAGTAGGTAA 58.527 36.000 0.00 0.00 33.64 2.85
2612 2831 6.049955 AGCTTTCATGTTTGCTAGTAGGTA 57.950 37.500 0.00 0.00 33.64 3.08
2613 2832 4.911390 AGCTTTCATGTTTGCTAGTAGGT 58.089 39.130 0.00 0.00 33.64 3.08
2614 2833 5.886960 AAGCTTTCATGTTTGCTAGTAGG 57.113 39.130 0.00 0.00 35.09 3.18
2617 2836 9.846248 CTTAATTAAGCTTTCATGTTTGCTAGT 57.154 29.630 12.15 0.04 35.09 2.57
2634 2853 9.813080 GCTAAATTATCTCCGTGCTTAATTAAG 57.187 33.333 19.08 19.08 36.40 1.85
2635 2854 9.332502 TGCTAAATTATCTCCGTGCTTAATTAA 57.667 29.630 0.00 0.00 0.00 1.40
2636 2855 8.896320 TGCTAAATTATCTCCGTGCTTAATTA 57.104 30.769 0.00 0.00 0.00 1.40
2637 2856 7.801716 TGCTAAATTATCTCCGTGCTTAATT 57.198 32.000 0.00 0.00 0.00 1.40
2638 2857 7.661437 TGATGCTAAATTATCTCCGTGCTTAAT 59.339 33.333 0.00 0.00 0.00 1.40
2639 2858 6.989759 TGATGCTAAATTATCTCCGTGCTTAA 59.010 34.615 0.00 0.00 0.00 1.85
2640 2859 6.521162 TGATGCTAAATTATCTCCGTGCTTA 58.479 36.000 0.00 0.00 0.00 3.09
2641 2860 5.368145 TGATGCTAAATTATCTCCGTGCTT 58.632 37.500 0.00 0.00 0.00 3.91
2642 2861 4.960938 TGATGCTAAATTATCTCCGTGCT 58.039 39.130 0.00 0.00 0.00 4.40
2643 2862 5.673337 TTGATGCTAAATTATCTCCGTGC 57.327 39.130 0.00 0.00 0.00 5.34
2644 2863 8.393366 CCATATTGATGCTAAATTATCTCCGTG 58.607 37.037 0.00 0.00 0.00 4.94
2645 2864 8.103305 ACCATATTGATGCTAAATTATCTCCGT 58.897 33.333 0.00 0.00 0.00 4.69
2646 2865 8.498054 ACCATATTGATGCTAAATTATCTCCG 57.502 34.615 0.00 0.00 0.00 4.63
2652 2871 9.719355 ACGACATACCATATTGATGCTAAATTA 57.281 29.630 0.00 0.00 0.00 1.40
2653 2872 8.621532 ACGACATACCATATTGATGCTAAATT 57.378 30.769 0.00 0.00 0.00 1.82
2654 2873 7.877612 TGACGACATACCATATTGATGCTAAAT 59.122 33.333 0.00 0.00 0.00 1.40
2655 2874 7.213678 TGACGACATACCATATTGATGCTAAA 58.786 34.615 0.00 0.00 0.00 1.85
2656 2875 6.754193 TGACGACATACCATATTGATGCTAA 58.246 36.000 0.00 0.00 0.00 3.09
2657 2876 6.339587 TGACGACATACCATATTGATGCTA 57.660 37.500 0.00 0.00 0.00 3.49
2658 2877 5.213891 TGACGACATACCATATTGATGCT 57.786 39.130 0.00 0.00 0.00 3.79
2659 2878 4.143030 GCTGACGACATACCATATTGATGC 60.143 45.833 0.00 0.00 0.00 3.91
2660 2879 4.389992 GGCTGACGACATACCATATTGATG 59.610 45.833 0.00 0.00 0.00 3.07
2661 2880 4.569943 GGCTGACGACATACCATATTGAT 58.430 43.478 0.00 0.00 0.00 2.57
2662 2881 3.990092 GGCTGACGACATACCATATTGA 58.010 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.