Multiple sequence alignment - TraesCS7D01G512800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G512800 chr7D 100.000 4104 0 0 1 4104 614278768 614274665 0.000000e+00 7579.0
1 TraesCS7D01G512800 chr7D 96.399 361 13 0 3658 4018 614269527 614269167 2.730000e-166 595.0
2 TraesCS7D01G512800 chr7B 90.333 1924 120 19 1387 3307 706161575 706159715 0.000000e+00 2462.0
3 TraesCS7D01G512800 chr7B 93.738 1070 60 4 2146 3208 706108364 706107295 0.000000e+00 1598.0
4 TraesCS7D01G512800 chr7B 91.344 1086 85 6 2127 3210 706060643 706059565 0.000000e+00 1476.0
5 TraesCS7D01G512800 chr7B 90.617 746 59 7 1942 2685 706155843 706155107 0.000000e+00 979.0
6 TraesCS7D01G512800 chr7B 91.341 589 45 5 2679 3267 706135284 706134702 0.000000e+00 800.0
7 TraesCS7D01G512800 chr7B 89.167 600 54 9 1450 2046 706108963 706108372 0.000000e+00 737.0
8 TraesCS7D01G512800 chr7B 92.340 483 30 5 5 484 706072306 706071828 0.000000e+00 680.0
9 TraesCS7D01G512800 chr7B 91.331 496 37 2 2591 3086 706188906 706189395 0.000000e+00 673.0
10 TraesCS7D01G512800 chr7B 90.278 504 44 3 1680 2180 706062222 706061721 0.000000e+00 654.0
11 TraesCS7D01G512800 chr7B 89.200 500 52 2 1126 1623 706061193 706060694 1.250000e-174 623.0
12 TraesCS7D01G512800 chr7B 84.664 639 63 16 843 1454 706110014 706109384 4.540000e-169 604.0
13 TraesCS7D01G512800 chr7B 84.973 559 63 8 2568 3113 713117955 713118505 7.760000e-152 547.0
14 TraesCS7D01G512800 chr7B 84.722 504 60 12 2078 2572 713117190 713117685 4.770000e-134 488.0
15 TraesCS7D01G512800 chr7B 89.594 394 23 8 3069 3446 706189434 706189825 6.170000e-133 484.0
16 TraesCS7D01G512800 chr7B 85.031 481 42 7 844 1319 706162076 706161621 2.890000e-126 462.0
17 TraesCS7D01G512800 chr7B 91.089 303 20 1 955 1257 706070711 706070416 1.780000e-108 403.0
18 TraesCS7D01G512800 chr7B 91.011 267 14 6 3191 3449 706059365 706059101 6.530000e-93 351.0
19 TraesCS7D01G512800 chr7B 94.787 211 11 0 1391 1601 706063557 706063347 3.060000e-86 329.0
20 TraesCS7D01G512800 chr7B 95.028 181 7 2 3479 3657 706059010 706058830 2.410000e-72 283.0
21 TraesCS7D01G512800 chr7B 90.594 202 11 3 3462 3657 706189918 706190117 1.130000e-65 261.0
22 TraesCS7D01G512800 chr7B 90.110 182 10 3 3276 3449 706107302 706107121 3.190000e-56 230.0
23 TraesCS7D01G512800 chr7B 93.007 143 9 1 3516 3657 706133868 706133726 1.500000e-49 207.0
24 TraesCS7D01G512800 chr7B 92.029 138 5 2 3524 3655 706106937 706106800 5.420000e-44 189.0
25 TraesCS7D01G512800 chr7B 97.468 79 2 0 1259 1337 706063658 706063580 7.160000e-28 135.0
26 TraesCS7D01G512800 chr7B 95.349 43 2 0 493 535 706110291 706110249 7.360000e-08 69.4
27 TraesCS7D01G512800 chr7A 91.673 1261 89 9 2197 3449 706344581 706343329 0.000000e+00 1733.0
28 TraesCS7D01G512800 chr7A 87.512 1073 93 17 927 1969 706345876 706344815 0.000000e+00 1201.0
29 TraesCS7D01G512800 chr7A 87.396 960 104 9 2161 3113 712338389 712339338 0.000000e+00 1086.0
30 TraesCS7D01G512800 chr7A 84.666 763 71 20 5 731 706346670 706345918 0.000000e+00 719.0
31 TraesCS7D01G512800 chr7A 84.709 327 43 2 1000 1323 712327656 712327978 1.840000e-83 320.0
32 TraesCS7D01G512800 chr7A 90.500 200 6 7 3459 3648 706343242 706343046 6.810000e-63 252.0
33 TraesCS7D01G512800 chr1D 93.646 362 22 1 3658 4018 45663839 45663478 1.300000e-149 540.0
34 TraesCS7D01G512800 chr5A 84.577 402 53 9 3704 4102 92180241 92180636 1.380000e-104 390.0
35 TraesCS7D01G512800 chr5A 82.371 329 48 10 3704 4029 92185878 92186199 1.120000e-70 278.0
36 TraesCS7D01G512800 chr3A 84.539 401 53 9 3707 4104 140049877 140049483 4.970000e-104 388.0
37 TraesCS7D01G512800 chr3A 83.228 316 44 9 3707 4019 140044051 140043742 8.690000e-72 281.0
38 TraesCS7D01G512800 chr3A 80.000 140 22 6 3707 3844 140044238 140044103 9.390000e-17 99.0
39 TraesCS7D01G512800 chr6D 83.607 305 36 11 3658 3954 22989057 22989355 1.450000e-69 274.0
40 TraesCS7D01G512800 chr5D 77.273 396 85 4 2200 2591 42039624 42040018 1.150000e-55 228.0
41 TraesCS7D01G512800 chr5B 75.940 399 81 7 2199 2594 36730718 36731104 1.510000e-44 191.0
42 TraesCS7D01G512800 chr1B 79.545 264 35 16 3658 3913 127307014 127306762 1.960000e-38 171.0
43 TraesCS7D01G512800 chr2A 95.000 100 4 1 3351 3449 86676816 86676717 5.490000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G512800 chr7D 614274665 614278768 4103 True 7579.000000 7579 100.000000 1 4104 1 chr7D.!!$R2 4103
1 TraesCS7D01G512800 chr7B 706155107 706162076 6969 True 1301.000000 2462 88.660333 844 3307 3 chr7B.!!$R5 2463
2 TraesCS7D01G512800 chr7B 706106800 706110291 3491 True 571.233333 1598 90.842833 493 3655 6 chr7B.!!$R3 3162
3 TraesCS7D01G512800 chr7B 706058830 706063658 4828 True 550.142857 1476 92.730857 1126 3657 7 chr7B.!!$R1 2531
4 TraesCS7D01G512800 chr7B 706070416 706072306 1890 True 541.500000 680 91.714500 5 1257 2 chr7B.!!$R2 1252
5 TraesCS7D01G512800 chr7B 713117190 713118505 1315 False 517.500000 547 84.847500 2078 3113 2 chr7B.!!$F2 1035
6 TraesCS7D01G512800 chr7B 706133726 706135284 1558 True 503.500000 800 92.174000 2679 3657 2 chr7B.!!$R4 978
7 TraesCS7D01G512800 chr7B 706188906 706190117 1211 False 472.666667 673 90.506333 2591 3657 3 chr7B.!!$F1 1066
8 TraesCS7D01G512800 chr7A 712338389 712339338 949 False 1086.000000 1086 87.396000 2161 3113 1 chr7A.!!$F2 952
9 TraesCS7D01G512800 chr7A 706343046 706346670 3624 True 976.250000 1733 88.587750 5 3648 4 chr7A.!!$R1 3643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1797 0.174617 TCGCACTCTCACAACACACA 59.825 50.0 0.00 0.00 0.00 3.72 F
1624 3906 0.037882 CTCGAGAAGCTCAAGGTGCA 60.038 55.0 6.58 0.00 0.00 4.57 F
2162 5635 0.106819 AGGATGCTGGCCTGAATCAC 60.107 55.0 27.06 17.93 33.59 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 5616 0.106819 GTGATTCAGGCCAGCATCCT 60.107 55.0 5.01 0.0 0.00 3.24 R
2470 6127 0.323360 TTAGCAGGACCATTGCCCAC 60.323 55.0 2.19 0.0 42.48 4.61 R
3843 11712 0.034477 ACTTTCCACCTATTGCCGGG 60.034 55.0 2.18 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 201 9.988350 ATATGCGCTAATATTTTCTTAAATCGG 57.012 29.630 9.73 0.00 35.61 4.18
211 216 3.791973 AATCGGTGAACACTTTGCAAA 57.208 38.095 12.14 12.14 0.00 3.68
325 333 5.754406 TCATGGAAGCTTTGTGAACATTTTG 59.246 36.000 0.00 0.00 0.00 2.44
382 391 5.446143 TTTTTCAGTTGTGCGGATACATT 57.554 34.783 0.00 0.00 0.00 2.71
385 394 4.678509 TCAGTTGTGCGGATACATTTTC 57.321 40.909 0.00 0.00 0.00 2.29
386 395 3.124466 TCAGTTGTGCGGATACATTTTCG 59.876 43.478 0.00 0.00 0.00 3.46
389 398 4.394920 AGTTGTGCGGATACATTTTCGAAT 59.605 37.500 0.00 0.00 0.00 3.34
398 407 7.379529 GCGGATACATTTTCGAATTTCATGAAT 59.620 33.333 9.40 0.00 0.00 2.57
399 408 8.684655 CGGATACATTTTCGAATTTCATGAATG 58.315 33.333 9.40 12.60 0.00 2.67
539 577 1.519408 GAGGAAACGTGCTTTGCCTA 58.481 50.000 0.00 0.00 30.53 3.93
572 629 0.879090 GACAACGAAAAGGGCCGAAT 59.121 50.000 0.00 0.00 0.00 3.34
587 644 2.411547 GCCGAATAAGCGATGGAAATCG 60.412 50.000 3.81 3.81 45.99 3.34
633 790 2.576053 CGAGCGCACGTGTACGAT 60.576 61.111 19.34 11.95 43.02 3.73
706 863 0.667487 ACTTCCACGTCGTGCTCATG 60.667 55.000 20.01 6.06 31.34 3.07
712 869 2.034879 CGTCGTGCTCATGGCCTTT 61.035 57.895 3.32 0.00 40.92 3.11
751 908 4.257510 GCGGCGCGATGAGAGAGA 62.258 66.667 19.09 0.00 0.00 3.10
752 909 2.352915 CGGCGCGATGAGAGAGAC 60.353 66.667 12.10 0.00 0.00 3.36
753 910 2.801421 GGCGCGATGAGAGAGACA 59.199 61.111 12.10 0.00 0.00 3.41
754 911 1.587613 GGCGCGATGAGAGAGACAC 60.588 63.158 12.10 0.00 0.00 3.67
755 912 1.587613 GCGCGATGAGAGAGACACC 60.588 63.158 12.10 0.00 0.00 4.16
756 913 1.803289 CGCGATGAGAGAGACACCA 59.197 57.895 0.00 0.00 0.00 4.17
757 914 0.383590 CGCGATGAGAGAGACACCAT 59.616 55.000 0.00 0.00 0.00 3.55
758 915 1.599171 CGCGATGAGAGAGACACCATC 60.599 57.143 0.00 0.00 33.86 3.51
759 916 1.406898 GCGATGAGAGAGACACCATCA 59.593 52.381 0.00 0.00 36.20 3.07
760 917 2.159184 GCGATGAGAGAGACACCATCAA 60.159 50.000 0.00 0.00 36.20 2.57
761 918 3.492309 GCGATGAGAGAGACACCATCAAT 60.492 47.826 0.00 0.00 36.20 2.57
762 919 4.297510 CGATGAGAGAGACACCATCAATC 58.702 47.826 0.00 0.00 36.20 2.67
763 920 4.202090 CGATGAGAGAGACACCATCAATCA 60.202 45.833 0.00 0.00 36.20 2.57
764 921 5.668471 GATGAGAGAGACACCATCAATCAA 58.332 41.667 0.00 0.00 36.38 2.57
765 922 5.488262 TGAGAGAGACACCATCAATCAAA 57.512 39.130 0.00 0.00 0.00 2.69
766 923 6.058553 TGAGAGAGACACCATCAATCAAAT 57.941 37.500 0.00 0.00 0.00 2.32
767 924 6.111382 TGAGAGAGACACCATCAATCAAATC 58.889 40.000 0.00 0.00 0.00 2.17
768 925 6.058553 AGAGAGACACCATCAATCAAATCA 57.941 37.500 0.00 0.00 0.00 2.57
769 926 6.114089 AGAGAGACACCATCAATCAAATCAG 58.886 40.000 0.00 0.00 0.00 2.90
770 927 4.639310 AGAGACACCATCAATCAAATCAGC 59.361 41.667 0.00 0.00 0.00 4.26
771 928 3.698040 AGACACCATCAATCAAATCAGCC 59.302 43.478 0.00 0.00 0.00 4.85
772 929 2.424601 ACACCATCAATCAAATCAGCCG 59.575 45.455 0.00 0.00 0.00 5.52
773 930 2.684374 CACCATCAATCAAATCAGCCGA 59.316 45.455 0.00 0.00 0.00 5.54
774 931 2.684881 ACCATCAATCAAATCAGCCGAC 59.315 45.455 0.00 0.00 0.00 4.79
775 932 2.286595 CCATCAATCAAATCAGCCGACG 60.287 50.000 0.00 0.00 0.00 5.12
776 933 1.368641 TCAATCAAATCAGCCGACGG 58.631 50.000 10.29 10.29 0.00 4.79
796 953 2.484889 GCTCCGGCTAAGATAAGGTTG 58.515 52.381 0.00 0.00 35.22 3.77
802 959 4.263068 CCGGCTAAGATAAGGTTGATCCAT 60.263 45.833 0.00 0.00 39.02 3.41
803 960 5.308825 CGGCTAAGATAAGGTTGATCCATT 58.691 41.667 0.00 0.00 39.02 3.16
804 961 5.409826 CGGCTAAGATAAGGTTGATCCATTC 59.590 44.000 0.00 0.00 39.02 2.67
807 964 6.429385 GCTAAGATAAGGTTGATCCATTCCAG 59.571 42.308 0.00 0.00 39.02 3.86
808 965 4.723309 AGATAAGGTTGATCCATTCCAGC 58.277 43.478 0.00 0.00 39.02 4.85
809 966 2.905415 AAGGTTGATCCATTCCAGCA 57.095 45.000 0.00 0.00 39.02 4.41
811 968 4.524802 AAGGTTGATCCATTCCAGCATA 57.475 40.909 0.00 0.00 39.02 3.14
812 969 3.825328 AGGTTGATCCATTCCAGCATAC 58.175 45.455 0.00 0.00 39.02 2.39
813 970 3.461085 AGGTTGATCCATTCCAGCATACT 59.539 43.478 0.00 0.00 39.02 2.12
814 971 4.079558 AGGTTGATCCATTCCAGCATACTT 60.080 41.667 0.00 0.00 39.02 2.24
816 973 5.127682 GGTTGATCCATTCCAGCATACTTTT 59.872 40.000 0.00 0.00 35.97 2.27
817 974 5.840243 TGATCCATTCCAGCATACTTTTG 57.160 39.130 0.00 0.00 0.00 2.44
818 975 4.098349 TGATCCATTCCAGCATACTTTTGC 59.902 41.667 0.00 0.00 43.09 3.68
821 978 1.173043 TTCCAGCATACTTTTGCCCG 58.827 50.000 0.00 0.00 43.83 6.13
822 979 0.326595 TCCAGCATACTTTTGCCCGA 59.673 50.000 0.00 0.00 43.83 5.14
823 980 0.451783 CCAGCATACTTTTGCCCGAC 59.548 55.000 0.00 0.00 43.83 4.79
824 981 1.164411 CAGCATACTTTTGCCCGACA 58.836 50.000 0.00 0.00 43.83 4.35
825 982 1.539388 CAGCATACTTTTGCCCGACAA 59.461 47.619 0.00 0.00 43.83 3.18
826 983 1.539827 AGCATACTTTTGCCCGACAAC 59.460 47.619 0.00 0.00 43.83 3.32
827 984 1.539827 GCATACTTTTGCCCGACAACT 59.460 47.619 0.00 0.00 38.23 3.16
828 985 2.030274 GCATACTTTTGCCCGACAACTT 60.030 45.455 0.00 0.00 38.23 2.66
830 987 1.470051 ACTTTTGCCCGACAACTTGT 58.530 45.000 0.00 0.00 38.23 3.16
831 988 1.404035 ACTTTTGCCCGACAACTTGTC 59.596 47.619 11.37 11.37 43.65 3.18
832 989 0.741915 TTTTGCCCGACAACTTGTCC 59.258 50.000 14.98 3.58 44.20 4.02
833 990 0.394488 TTTGCCCGACAACTTGTCCA 60.394 50.000 14.98 5.93 44.20 4.02
834 991 1.098712 TTGCCCGACAACTTGTCCAC 61.099 55.000 14.98 6.47 44.20 4.02
835 992 2.258726 GCCCGACAACTTGTCCACC 61.259 63.158 14.98 1.53 44.20 4.61
839 996 0.813610 CGACAACTTGTCCACCTGCA 60.814 55.000 14.98 0.00 44.20 4.41
841 998 1.103398 ACAACTTGTCCACCTGCAGC 61.103 55.000 8.66 0.00 0.00 5.25
858 1038 0.405585 AGCTAGCAGGCCCAGAAAAA 59.594 50.000 18.83 0.00 0.00 1.94
906 1126 1.374758 CTTCTCACCTGCCGTGTCC 60.375 63.158 1.40 0.00 43.51 4.02
948 1171 3.660970 TTTGGAGCTGCCCATATACAA 57.339 42.857 1.53 0.00 35.87 2.41
983 1783 0.373716 GACGGGTTCATTCATCGCAC 59.626 55.000 0.00 0.00 0.00 5.34
990 1790 2.995939 GTTCATTCATCGCACTCTCACA 59.004 45.455 0.00 0.00 0.00 3.58
991 1791 3.317603 TCATTCATCGCACTCTCACAA 57.682 42.857 0.00 0.00 0.00 3.33
992 1792 2.995939 TCATTCATCGCACTCTCACAAC 59.004 45.455 0.00 0.00 0.00 3.32
993 1793 2.524569 TTCATCGCACTCTCACAACA 57.475 45.000 0.00 0.00 0.00 3.33
994 1794 1.783284 TCATCGCACTCTCACAACAC 58.217 50.000 0.00 0.00 0.00 3.32
995 1795 1.068434 TCATCGCACTCTCACAACACA 59.932 47.619 0.00 0.00 0.00 3.72
996 1796 1.193203 CATCGCACTCTCACAACACAC 59.807 52.381 0.00 0.00 0.00 3.82
997 1797 0.174617 TCGCACTCTCACAACACACA 59.825 50.000 0.00 0.00 0.00 3.72
998 1798 1.006086 CGCACTCTCACAACACACAA 58.994 50.000 0.00 0.00 0.00 3.33
1011 1811 3.281727 ACACACAACATGGACACTCTT 57.718 42.857 0.00 0.00 0.00 2.85
1047 1847 3.639541 CTTGCTCTGCGCTCTCGGT 62.640 63.158 9.73 0.00 40.11 4.69
1349 2170 2.407268 GCCATGCGGTGATTGATCA 58.593 52.632 0.00 0.00 33.28 2.92
1380 2207 3.785486 TGGCAAAGTACATGAGAGATCG 58.215 45.455 0.00 0.00 0.00 3.69
1389 2225 1.051812 ATGAGAGATCGCCGGGATTT 58.948 50.000 2.18 0.00 34.82 2.17
1448 2284 2.607750 AGGGTGGTGGTGAGCGAT 60.608 61.111 0.00 0.00 0.00 4.58
1508 2769 0.543174 AGTTCGGGAAGCAGAGGTCT 60.543 55.000 0.00 0.00 0.00 3.85
1623 3905 0.244994 TCTCGAGAAGCTCAAGGTGC 59.755 55.000 14.01 0.00 0.00 5.01
1624 3906 0.037882 CTCGAGAAGCTCAAGGTGCA 60.038 55.000 6.58 0.00 0.00 4.57
1625 3907 0.610174 TCGAGAAGCTCAAGGTGCAT 59.390 50.000 0.00 0.00 0.00 3.96
1627 3909 0.450983 GAGAAGCTCAAGGTGCATGC 59.549 55.000 11.82 11.82 0.00 4.06
1631 3913 1.080298 GCTCAAGGTGCATGCCAAC 60.080 57.895 16.68 7.49 0.00 3.77
1632 3914 1.588082 CTCAAGGTGCATGCCAACC 59.412 57.895 16.68 17.09 0.00 3.77
1633 3915 1.152589 TCAAGGTGCATGCCAACCA 60.153 52.632 24.61 5.91 0.00 3.67
1689 3999 4.821805 ACGCATATACTTTGCAGGCTAATT 59.178 37.500 0.00 0.00 40.14 1.40
1697 4007 2.824689 TGCAGGCTAATTGGGATTGA 57.175 45.000 0.00 0.00 0.00 2.57
1698 4008 3.098774 TGCAGGCTAATTGGGATTGAA 57.901 42.857 0.00 0.00 0.00 2.69
1730 4041 0.669318 TGTTACCGGCTTTCGCAGAG 60.669 55.000 0.00 0.00 38.43 3.35
1823 4134 2.485479 GCCAGAGTTTCAGAACCTCACA 60.485 50.000 10.15 0.00 36.39 3.58
1826 4137 2.370189 AGAGTTTCAGAACCTCACAGGG 59.630 50.000 10.15 0.00 40.58 4.45
1832 4143 1.186267 AGAACCTCACAGGGGACGTC 61.186 60.000 7.13 7.13 40.58 4.34
1835 4146 1.258445 ACCTCACAGGGGACGTCATC 61.258 60.000 18.91 8.73 40.58 2.92
1844 4155 0.465097 GGGACGTCATCTCCCGAGTA 60.465 60.000 18.91 0.00 38.24 2.59
1863 4174 3.181967 CGTTCGGGAGCAGCTTCG 61.182 66.667 11.50 11.50 0.00 3.79
1970 4281 1.484240 AGGTGAGCTCATACTTCCAGC 59.516 52.381 21.47 4.16 0.00 4.85
2014 4327 9.170734 TGCATCTCCATATTAATTTCTAGCATC 57.829 33.333 0.00 0.00 0.00 3.91
2015 4328 8.333908 GCATCTCCATATTAATTTCTAGCATCG 58.666 37.037 0.00 0.00 0.00 3.84
2016 4329 7.834068 TCTCCATATTAATTTCTAGCATCGC 57.166 36.000 0.00 0.00 0.00 4.58
2033 4346 1.261354 TCGCGCATCAGAACAATATGC 59.739 47.619 8.75 0.00 42.02 3.14
2050 4363 0.317160 TGCTCACAACCAGTAGTCCG 59.683 55.000 0.00 0.00 0.00 4.79
2094 4407 8.514594 AGATACATATTGTTTGTGTTGTTCAGG 58.485 33.333 0.00 0.00 0.00 3.86
2135 5608 0.319728 CCACTCAGTCCAGTCCACAG 59.680 60.000 0.00 0.00 0.00 3.66
2136 5609 1.332195 CACTCAGTCCAGTCCACAGA 58.668 55.000 0.00 0.00 0.00 3.41
2137 5610 1.688735 CACTCAGTCCAGTCCACAGAA 59.311 52.381 0.00 0.00 0.00 3.02
2138 5611 2.301296 CACTCAGTCCAGTCCACAGAAT 59.699 50.000 0.00 0.00 0.00 2.40
2139 5612 3.511540 CACTCAGTCCAGTCCACAGAATA 59.488 47.826 0.00 0.00 0.00 1.75
2140 5613 3.766591 ACTCAGTCCAGTCCACAGAATAG 59.233 47.826 0.00 0.00 0.00 1.73
2141 5614 4.019858 CTCAGTCCAGTCCACAGAATAGA 58.980 47.826 0.00 0.00 0.00 1.98
2142 5615 4.019858 TCAGTCCAGTCCACAGAATAGAG 58.980 47.826 0.00 0.00 0.00 2.43
2143 5616 4.019858 CAGTCCAGTCCACAGAATAGAGA 58.980 47.826 0.00 0.00 0.00 3.10
2144 5617 4.097741 CAGTCCAGTCCACAGAATAGAGAG 59.902 50.000 0.00 0.00 0.00 3.20
2145 5618 3.383185 GTCCAGTCCACAGAATAGAGAGG 59.617 52.174 0.00 0.00 0.00 3.69
2146 5619 3.269643 TCCAGTCCACAGAATAGAGAGGA 59.730 47.826 0.00 0.00 0.00 3.71
2147 5620 4.078922 TCCAGTCCACAGAATAGAGAGGAT 60.079 45.833 0.00 0.00 0.00 3.24
2148 5621 4.039004 CCAGTCCACAGAATAGAGAGGATG 59.961 50.000 0.00 0.00 0.00 3.51
2149 5622 3.640967 AGTCCACAGAATAGAGAGGATGC 59.359 47.826 0.00 0.00 0.00 3.91
2150 5623 3.640967 GTCCACAGAATAGAGAGGATGCT 59.359 47.826 0.00 0.00 0.00 3.79
2151 5624 3.640498 TCCACAGAATAGAGAGGATGCTG 59.360 47.826 0.00 0.00 36.20 4.41
2152 5625 3.244146 CCACAGAATAGAGAGGATGCTGG 60.244 52.174 0.00 0.00 34.62 4.85
2153 5626 2.368221 ACAGAATAGAGAGGATGCTGGC 59.632 50.000 0.00 0.00 34.62 4.85
2154 5627 1.977129 AGAATAGAGAGGATGCTGGCC 59.023 52.381 0.00 0.00 0.00 5.36
2162 5635 0.106819 AGGATGCTGGCCTGAATCAC 60.107 55.000 27.06 17.93 33.59 3.06
2226 5883 2.819608 TCCTGCCAACAAAGCTCAATAC 59.180 45.455 0.00 0.00 0.00 1.89
2850 6788 0.608640 GTGTGGGGAGAAGATGTCGT 59.391 55.000 0.00 0.00 0.00 4.34
2857 6795 3.623510 GGGGAGAAGATGTCGTTGAATTC 59.376 47.826 0.00 0.00 0.00 2.17
2875 6813 2.836154 AAGCCGGAGAGGTTTGCA 59.164 55.556 5.05 0.00 42.15 4.08
3094 7095 1.666189 GGTTCGCAGATTAAGCTCACC 59.334 52.381 0.00 0.00 35.04 4.02
3208 7438 6.864421 TCCTGGGAGAGATGTATGTAGTATT 58.136 40.000 0.00 0.00 0.00 1.89
3333 7995 1.306654 ATCAGTACCGGGGCTGGAA 60.307 57.895 21.93 8.86 33.81 3.53
3377 8402 2.698803 TGTGGGAAGATCACATGAACG 58.301 47.619 0.00 0.00 39.83 3.95
3449 8477 1.740380 CGATGCTACCACTCCAACCTG 60.740 57.143 0.00 0.00 0.00 4.00
3450 8478 0.035056 ATGCTACCACTCCAACCTGC 60.035 55.000 0.00 0.00 0.00 4.85
3452 8480 0.674895 GCTACCACTCCAACCTGCTG 60.675 60.000 0.00 0.00 0.00 4.41
3470 9448 5.163663 CCTGCTGTTGTTACTTGACTCAAAA 60.164 40.000 0.00 0.00 0.00 2.44
3503 10521 3.591023 TGCTGTTGCACGTAGCTTAATA 58.409 40.909 14.75 0.00 45.31 0.98
3660 11529 2.562912 CATGCACGGCCTTGTGTC 59.437 61.111 11.38 4.94 41.94 3.67
3661 11530 2.112928 ATGCACGGCCTTGTGTCA 59.887 55.556 11.38 10.04 41.94 3.58
3662 11531 1.968017 ATGCACGGCCTTGTGTCAG 60.968 57.895 11.38 0.00 41.94 3.51
3665 11534 1.961277 CACGGCCTTGTGTCAGGAC 60.961 63.158 0.00 0.00 38.87 3.85
3666 11535 2.358737 CGGCCTTGTGTCAGGACC 60.359 66.667 0.00 0.00 39.10 4.46
3667 11536 2.358737 GGCCTTGTGTCAGGACCG 60.359 66.667 0.00 0.00 35.60 4.79
3668 11537 2.741092 GCCTTGTGTCAGGACCGA 59.259 61.111 0.00 0.00 35.71 4.69
3669 11538 1.070786 GCCTTGTGTCAGGACCGAA 59.929 57.895 0.00 0.00 35.71 4.30
3670 11539 1.228657 GCCTTGTGTCAGGACCGAAC 61.229 60.000 0.00 0.00 35.71 3.95
3671 11540 0.393077 CCTTGTGTCAGGACCGAACT 59.607 55.000 0.00 0.00 35.71 3.01
3673 11542 2.233922 CCTTGTGTCAGGACCGAACTAT 59.766 50.000 0.00 0.00 35.71 2.12
3675 11544 4.081862 CCTTGTGTCAGGACCGAACTATAA 60.082 45.833 0.00 0.00 35.71 0.98
3676 11545 5.395324 CCTTGTGTCAGGACCGAACTATAAT 60.395 44.000 0.00 0.00 35.71 1.28
3678 11547 5.657474 TGTGTCAGGACCGAACTATAATTC 58.343 41.667 0.00 0.00 0.00 2.17
3680 11549 5.749109 GTGTCAGGACCGAACTATAATTCAG 59.251 44.000 0.00 0.00 0.00 3.02
3681 11550 5.655090 TGTCAGGACCGAACTATAATTCAGA 59.345 40.000 0.00 0.00 0.00 3.27
3683 11552 6.864165 GTCAGGACCGAACTATAATTCAGATC 59.136 42.308 0.00 0.00 0.00 2.75
3684 11553 6.549736 TCAGGACCGAACTATAATTCAGATCA 59.450 38.462 0.00 0.00 0.00 2.92
3685 11554 6.642950 CAGGACCGAACTATAATTCAGATCAC 59.357 42.308 0.00 0.00 0.00 3.06
3687 11556 6.642950 GGACCGAACTATAATTCAGATCACAG 59.357 42.308 0.00 0.00 0.00 3.66
3689 11558 7.203910 ACCGAACTATAATTCAGATCACAGAC 58.796 38.462 0.00 0.00 0.00 3.51
3690 11559 7.068839 ACCGAACTATAATTCAGATCACAGACT 59.931 37.037 0.00 0.00 0.00 3.24
3691 11560 8.568794 CCGAACTATAATTCAGATCACAGACTA 58.431 37.037 0.00 0.00 0.00 2.59
3692 11561 9.605955 CGAACTATAATTCAGATCACAGACTAG 57.394 37.037 0.00 0.00 0.00 2.57
3693 11562 9.906660 GAACTATAATTCAGATCACAGACTAGG 57.093 37.037 0.00 0.00 0.00 3.02
3694 11563 8.415950 ACTATAATTCAGATCACAGACTAGGG 57.584 38.462 0.00 0.00 0.00 3.53
3695 11564 8.228206 ACTATAATTCAGATCACAGACTAGGGA 58.772 37.037 0.00 0.00 0.00 4.20
3696 11565 9.253832 CTATAATTCAGATCACAGACTAGGGAT 57.746 37.037 0.00 0.00 0.00 3.85
3697 11566 6.821616 AATTCAGATCACAGACTAGGGATT 57.178 37.500 0.00 0.00 0.00 3.01
3698 11567 6.821616 ATTCAGATCACAGACTAGGGATTT 57.178 37.500 0.00 0.00 0.00 2.17
3699 11568 5.604758 TCAGATCACAGACTAGGGATTTG 57.395 43.478 0.00 0.00 0.00 2.32
3701 11570 5.362143 TCAGATCACAGACTAGGGATTTGAG 59.638 44.000 0.00 0.00 30.37 3.02
3702 11571 4.653341 AGATCACAGACTAGGGATTTGAGG 59.347 45.833 0.00 0.00 0.00 3.86
3704 11573 3.107601 CACAGACTAGGGATTTGAGGGA 58.892 50.000 0.00 0.00 0.00 4.20
3705 11574 3.519510 CACAGACTAGGGATTTGAGGGAA 59.480 47.826 0.00 0.00 0.00 3.97
3706 11575 3.777522 ACAGACTAGGGATTTGAGGGAAG 59.222 47.826 0.00 0.00 0.00 3.46
3707 11576 4.033709 CAGACTAGGGATTTGAGGGAAGA 58.966 47.826 0.00 0.00 0.00 2.87
3709 11578 5.045578 CAGACTAGGGATTTGAGGGAAGAAA 60.046 44.000 0.00 0.00 0.00 2.52
3710 11579 5.733647 AGACTAGGGATTTGAGGGAAGAAAT 59.266 40.000 0.00 0.00 0.00 2.17
3711 11580 5.760131 ACTAGGGATTTGAGGGAAGAAATG 58.240 41.667 0.00 0.00 0.00 2.32
3712 11581 3.986435 AGGGATTTGAGGGAAGAAATGG 58.014 45.455 0.00 0.00 0.00 3.16
3713 11582 3.033909 GGGATTTGAGGGAAGAAATGGG 58.966 50.000 0.00 0.00 0.00 4.00
3714 11583 3.033909 GGATTTGAGGGAAGAAATGGGG 58.966 50.000 0.00 0.00 0.00 4.96
3716 11585 3.913370 TTTGAGGGAAGAAATGGGGAA 57.087 42.857 0.00 0.00 0.00 3.97
3717 11586 3.913370 TTGAGGGAAGAAATGGGGAAA 57.087 42.857 0.00 0.00 0.00 3.13
3719 11588 3.506398 TGAGGGAAGAAATGGGGAAAAC 58.494 45.455 0.00 0.00 0.00 2.43
3720 11589 3.142028 TGAGGGAAGAAATGGGGAAAACT 59.858 43.478 0.00 0.00 0.00 2.66
3721 11590 3.764434 GAGGGAAGAAATGGGGAAAACTC 59.236 47.826 0.00 0.00 0.00 3.01
3722 11591 2.492088 GGGAAGAAATGGGGAAAACTCG 59.508 50.000 0.00 0.00 0.00 4.18
3723 11592 2.094700 GGAAGAAATGGGGAAAACTCGC 60.095 50.000 0.00 0.00 0.00 5.03
3724 11593 1.545841 AGAAATGGGGAAAACTCGCC 58.454 50.000 1.45 1.45 42.34 5.54
3725 11594 0.530744 GAAATGGGGAAAACTCGCCC 59.469 55.000 5.84 0.00 43.91 6.13
3726 11595 0.178947 AAATGGGGAAAACTCGCCCA 60.179 50.000 0.00 0.00 46.57 5.36
3727 11596 0.611896 AATGGGGAAAACTCGCCCAG 60.612 55.000 0.00 0.00 46.57 4.45
3728 11597 1.497309 ATGGGGAAAACTCGCCCAGA 61.497 55.000 0.00 0.00 46.57 3.86
3729 11598 1.303282 GGGGAAAACTCGCCCAGAT 59.697 57.895 0.00 0.00 46.57 2.90
3730 11599 0.748367 GGGGAAAACTCGCCCAGATC 60.748 60.000 0.00 0.00 46.57 2.75
3731 11600 0.253327 GGGAAAACTCGCCCAGATCT 59.747 55.000 0.00 0.00 44.07 2.75
3732 11601 1.373570 GGAAAACTCGCCCAGATCTG 58.626 55.000 16.24 16.24 0.00 2.90
3743 11612 2.119801 CCAGATCTGGGAGGTGTTTG 57.880 55.000 31.14 3.98 46.81 2.93
3745 11614 2.571653 CCAGATCTGGGAGGTGTTTGTA 59.428 50.000 31.14 0.00 46.81 2.41
3747 11616 4.324563 CCAGATCTGGGAGGTGTTTGTATT 60.325 45.833 31.14 0.00 46.81 1.89
3748 11617 5.104527 CCAGATCTGGGAGGTGTTTGTATTA 60.105 44.000 31.14 0.00 46.81 0.98
3749 11618 6.051717 CAGATCTGGGAGGTGTTTGTATTAG 58.948 44.000 15.38 0.00 0.00 1.73
3750 11619 4.216411 TCTGGGAGGTGTTTGTATTAGC 57.784 45.455 0.00 0.00 0.00 3.09
3751 11620 3.844211 TCTGGGAGGTGTTTGTATTAGCT 59.156 43.478 0.00 0.00 0.00 3.32
3752 11621 3.941483 CTGGGAGGTGTTTGTATTAGCTG 59.059 47.826 0.00 0.00 0.00 4.24
3753 11622 3.329520 TGGGAGGTGTTTGTATTAGCTGT 59.670 43.478 0.00 0.00 0.00 4.40
3755 11624 5.190925 TGGGAGGTGTTTGTATTAGCTGTAT 59.809 40.000 0.00 0.00 0.00 2.29
3756 11625 5.527582 GGGAGGTGTTTGTATTAGCTGTATG 59.472 44.000 0.00 0.00 0.00 2.39
3757 11626 6.113411 GGAGGTGTTTGTATTAGCTGTATGT 58.887 40.000 0.00 0.00 0.00 2.29
3758 11627 6.598064 GGAGGTGTTTGTATTAGCTGTATGTT 59.402 38.462 0.00 0.00 0.00 2.71
3759 11628 7.120726 GGAGGTGTTTGTATTAGCTGTATGTTT 59.879 37.037 0.00 0.00 0.00 2.83
3760 11629 9.158233 GAGGTGTTTGTATTAGCTGTATGTTTA 57.842 33.333 0.00 0.00 0.00 2.01
3761 11630 8.943002 AGGTGTTTGTATTAGCTGTATGTTTAC 58.057 33.333 0.00 0.00 0.00 2.01
3762 11631 8.943002 GGTGTTTGTATTAGCTGTATGTTTACT 58.057 33.333 0.00 0.00 0.00 2.24
3767 11636 8.882415 TGTATTAGCTGTATGTTTACTTAGCC 57.118 34.615 0.00 0.00 31.08 3.93
3769 11638 9.490379 GTATTAGCTGTATGTTTACTTAGCCAT 57.510 33.333 0.00 0.00 31.08 4.40
3770 11639 8.608844 ATTAGCTGTATGTTTACTTAGCCATC 57.391 34.615 0.00 0.00 31.08 3.51
3772 11641 5.817816 AGCTGTATGTTTACTTAGCCATCAC 59.182 40.000 0.00 0.00 31.08 3.06
3773 11642 5.276868 GCTGTATGTTTACTTAGCCATCACG 60.277 44.000 0.00 0.00 0.00 4.35
3774 11643 5.113383 TGTATGTTTACTTAGCCATCACGG 58.887 41.667 0.00 0.00 38.11 4.94
3786 11655 2.542597 CCATCACGGCAAATTCAATGG 58.457 47.619 0.00 0.00 0.00 3.16
3787 11656 2.166050 CCATCACGGCAAATTCAATGGA 59.834 45.455 0.00 0.00 35.30 3.41
3788 11657 3.368220 CCATCACGGCAAATTCAATGGAA 60.368 43.478 0.00 0.00 35.30 3.53
3789 11658 3.574284 TCACGGCAAATTCAATGGAAG 57.426 42.857 0.00 0.00 36.25 3.46
3790 11659 3.153130 TCACGGCAAATTCAATGGAAGA 58.847 40.909 0.00 0.00 36.25 2.87
3791 11660 3.763360 TCACGGCAAATTCAATGGAAGAT 59.237 39.130 0.00 0.00 36.25 2.40
3792 11661 4.220382 TCACGGCAAATTCAATGGAAGATT 59.780 37.500 0.00 0.00 36.25 2.40
3793 11662 4.563976 CACGGCAAATTCAATGGAAGATTC 59.436 41.667 0.00 0.00 36.25 2.52
3794 11663 3.792956 CGGCAAATTCAATGGAAGATTCG 59.207 43.478 0.00 0.00 36.25 3.34
3795 11664 4.438608 CGGCAAATTCAATGGAAGATTCGA 60.439 41.667 0.00 0.00 36.25 3.71
3796 11665 5.594926 GGCAAATTCAATGGAAGATTCGAT 58.405 37.500 0.00 0.00 36.25 3.59
3798 11667 6.638468 GGCAAATTCAATGGAAGATTCGATAC 59.362 38.462 0.00 0.00 36.25 2.24
3802 11671 9.793252 AAATTCAATGGAAGATTCGATACTTTG 57.207 29.630 6.17 0.00 36.25 2.77
3803 11672 6.925610 TCAATGGAAGATTCGATACTTTGG 57.074 37.500 6.17 0.00 0.00 3.28
3805 11674 3.541632 TGGAAGATTCGATACTTTGGCC 58.458 45.455 0.00 0.00 0.00 5.36
3807 11676 3.561725 GGAAGATTCGATACTTTGGCCAG 59.438 47.826 5.11 0.00 0.00 4.85
3808 11677 2.565841 AGATTCGATACTTTGGCCAGC 58.434 47.619 5.11 0.00 0.00 4.85
3809 11678 1.604278 GATTCGATACTTTGGCCAGCC 59.396 52.381 5.11 0.38 0.00 4.85
3810 11679 0.326595 TTCGATACTTTGGCCAGCCA 59.673 50.000 7.43 7.43 45.63 4.75
3825 11694 4.974721 CCACAACCCGGCTGCCTT 62.975 66.667 17.92 0.89 0.00 4.35
3826 11695 2.912025 CACAACCCGGCTGCCTTT 60.912 61.111 17.92 4.16 0.00 3.11
3828 11697 0.965363 CACAACCCGGCTGCCTTTAT 60.965 55.000 17.92 0.00 0.00 1.40
3829 11698 0.621609 ACAACCCGGCTGCCTTTATA 59.378 50.000 17.92 0.00 0.00 0.98
3830 11699 1.308998 CAACCCGGCTGCCTTTATAG 58.691 55.000 17.92 0.00 0.00 1.31
3832 11701 0.986550 ACCCGGCTGCCTTTATAGGT 60.987 55.000 17.92 10.36 44.00 3.08
3833 11702 0.535102 CCCGGCTGCCTTTATAGGTG 60.535 60.000 17.92 0.00 44.00 4.00
3834 11703 0.535102 CCGGCTGCCTTTATAGGTGG 60.535 60.000 17.92 2.95 44.00 4.61
3835 11704 1.166531 CGGCTGCCTTTATAGGTGGC 61.167 60.000 17.92 5.73 44.00 5.01
3840 11709 0.663153 GCCTTTATAGGTGGCAAGCG 59.337 55.000 0.90 0.00 45.46 4.68
3841 11710 0.663153 CCTTTATAGGTGGCAAGCGC 59.337 55.000 0.00 0.00 36.74 5.92
3842 11711 1.668419 CTTTATAGGTGGCAAGCGCT 58.332 50.000 2.64 2.64 38.60 5.92
3843 11712 1.599542 CTTTATAGGTGGCAAGCGCTC 59.400 52.381 12.06 0.00 38.60 5.03
3845 11714 2.040009 TATAGGTGGCAAGCGCTCCC 62.040 60.000 12.06 15.58 38.60 4.30
3852 11721 2.513666 CAAGCGCTCCCGGCAATA 60.514 61.111 12.06 0.00 41.91 1.90
3855 11724 4.547367 GCGCTCCCGGCAATAGGT 62.547 66.667 0.00 0.00 41.91 3.08
3857 11726 2.203209 GCTCCCGGCAATAGGTGG 60.203 66.667 0.00 0.00 41.35 4.61
3858 11727 2.742116 GCTCCCGGCAATAGGTGGA 61.742 63.158 0.00 0.00 41.35 4.02
3859 11728 1.912220 CTCCCGGCAATAGGTGGAA 59.088 57.895 0.00 0.00 0.00 3.53
3860 11729 0.254747 CTCCCGGCAATAGGTGGAAA 59.745 55.000 0.00 0.00 0.00 3.13
3861 11730 0.254747 TCCCGGCAATAGGTGGAAAG 59.745 55.000 0.00 0.00 0.00 2.62
3863 11732 1.210967 CCCGGCAATAGGTGGAAAGTA 59.789 52.381 0.00 0.00 0.00 2.24
3864 11733 2.356330 CCCGGCAATAGGTGGAAAGTAA 60.356 50.000 0.00 0.00 0.00 2.24
3865 11734 2.681344 CCGGCAATAGGTGGAAAGTAAC 59.319 50.000 0.00 0.00 0.00 2.50
3866 11735 3.340034 CGGCAATAGGTGGAAAGTAACA 58.660 45.455 0.00 0.00 0.00 2.41
3868 11737 4.332828 GGCAATAGGTGGAAAGTAACAGT 58.667 43.478 0.00 0.00 0.00 3.55
3869 11738 5.493809 GGCAATAGGTGGAAAGTAACAGTA 58.506 41.667 0.00 0.00 0.00 2.74
3870 11739 5.941647 GGCAATAGGTGGAAAGTAACAGTAA 59.058 40.000 0.00 0.00 0.00 2.24
3871 11740 6.128090 GGCAATAGGTGGAAAGTAACAGTAAC 60.128 42.308 0.00 0.00 0.00 2.50
3872 11741 6.653740 GCAATAGGTGGAAAGTAACAGTAACT 59.346 38.462 0.00 0.00 0.00 2.24
3873 11742 7.820872 GCAATAGGTGGAAAGTAACAGTAACTA 59.179 37.037 0.00 0.00 0.00 2.24
3876 11745 7.370905 AGGTGGAAAGTAACAGTAACTAACT 57.629 36.000 0.00 0.00 39.81 2.24
3877 11746 8.482852 AGGTGGAAAGTAACAGTAACTAACTA 57.517 34.615 0.00 0.00 35.76 2.24
3878 11747 8.927411 AGGTGGAAAGTAACAGTAACTAACTAA 58.073 33.333 0.00 0.00 35.76 2.24
3879 11748 9.546428 GGTGGAAAGTAACAGTAACTAACTAAA 57.454 33.333 0.00 0.00 35.76 1.85
3884 11753 9.599866 AAAGTAACAGTAACTAACTAAAACGGT 57.400 29.630 0.00 0.00 35.76 4.83
3886 11755 9.678941 AGTAACAGTAACTAACTAAAACGGTAC 57.321 33.333 0.00 0.00 35.76 3.34
3887 11756 9.458374 GTAACAGTAACTAACTAAAACGGTACA 57.542 33.333 0.00 0.00 35.76 2.90
3889 11758 7.716612 ACAGTAACTAACTAAAACGGTACAGT 58.283 34.615 0.00 0.00 35.76 3.55
3890 11759 8.846211 ACAGTAACTAACTAAAACGGTACAGTA 58.154 33.333 0.00 0.00 35.76 2.74
3892 11761 9.284968 AGTAACTAACTAAAACGGTACAGTAGA 57.715 33.333 0.00 0.00 36.36 2.59
3893 11762 9.331106 GTAACTAACTAAAACGGTACAGTAGAC 57.669 37.037 0.00 0.00 0.00 2.59
3894 11763 7.510549 ACTAACTAAAACGGTACAGTAGACA 57.489 36.000 0.00 0.00 0.00 3.41
3895 11764 8.115490 ACTAACTAAAACGGTACAGTAGACAT 57.885 34.615 0.00 0.00 0.00 3.06
3896 11765 8.239998 ACTAACTAAAACGGTACAGTAGACATC 58.760 37.037 0.00 0.00 0.00 3.06
3897 11766 6.830873 ACTAAAACGGTACAGTAGACATCT 57.169 37.500 0.00 0.00 0.00 2.90
3900 11769 8.239998 ACTAAAACGGTACAGTAGACATCTAAC 58.760 37.037 0.00 0.00 0.00 2.34
3902 11771 3.624861 ACGGTACAGTAGACATCTAACGG 59.375 47.826 0.00 0.00 0.00 4.44
3903 11772 3.624861 CGGTACAGTAGACATCTAACGGT 59.375 47.826 0.00 0.00 0.00 4.83
3904 11773 4.260538 CGGTACAGTAGACATCTAACGGTC 60.261 50.000 0.00 0.00 0.00 4.79
3905 11774 4.260538 GGTACAGTAGACATCTAACGGTCG 60.261 50.000 0.00 0.00 39.01 4.79
3906 11775 3.603532 ACAGTAGACATCTAACGGTCGA 58.396 45.455 0.00 0.00 39.01 4.20
3907 11776 3.373439 ACAGTAGACATCTAACGGTCGAC 59.627 47.826 7.13 7.13 39.14 4.20
3922 11791 0.586319 TCGACGACGAACGGTAAAGT 59.414 50.000 7.68 0.00 45.74 2.66
3923 11792 1.660052 TCGACGACGAACGGTAAAGTG 60.660 52.381 7.68 0.00 45.74 3.16
3929 11798 1.785951 GAACGGTAAAGTGAGGCGC 59.214 57.895 0.00 0.00 0.00 6.53
3931 11800 2.126228 CGGTAAAGTGAGGCGCGA 60.126 61.111 12.10 0.00 0.00 5.87
3932 11801 1.518572 CGGTAAAGTGAGGCGCGAT 60.519 57.895 12.10 0.00 0.00 4.58
3933 11802 1.480219 CGGTAAAGTGAGGCGCGATC 61.480 60.000 12.10 7.69 0.00 3.69
3934 11803 0.179108 GGTAAAGTGAGGCGCGATCT 60.179 55.000 12.10 6.12 0.00 2.75
3935 11804 1.201343 GTAAAGTGAGGCGCGATCTC 58.799 55.000 12.10 16.55 0.00 2.75
3936 11805 0.815095 TAAAGTGAGGCGCGATCTCA 59.185 50.000 22.63 22.63 38.75 3.27
3937 11806 0.037326 AAAGTGAGGCGCGATCTCAA 60.037 50.000 26.24 13.17 42.13 3.02
3939 11808 2.167861 GTGAGGCGCGATCTCAACC 61.168 63.158 26.24 15.61 42.13 3.77
3940 11809 2.586357 GAGGCGCGATCTCAACCC 60.586 66.667 12.10 0.00 0.00 4.11
3941 11810 3.077556 AGGCGCGATCTCAACCCT 61.078 61.111 12.10 0.00 0.00 4.34
3942 11811 2.586357 GGCGCGATCTCAACCCTC 60.586 66.667 12.10 0.00 0.00 4.30
3944 11813 2.892640 CGCGATCTCAACCCTCCA 59.107 61.111 0.00 0.00 0.00 3.86
3945 11814 1.443407 CGCGATCTCAACCCTCCAT 59.557 57.895 0.00 0.00 0.00 3.41
3946 11815 0.598680 CGCGATCTCAACCCTCCATC 60.599 60.000 0.00 0.00 0.00 3.51
3947 11816 0.755686 GCGATCTCAACCCTCCATCT 59.244 55.000 0.00 0.00 0.00 2.90
3948 11817 1.964223 GCGATCTCAACCCTCCATCTA 59.036 52.381 0.00 0.00 0.00 1.98
3949 11818 2.288518 GCGATCTCAACCCTCCATCTAC 60.289 54.545 0.00 0.00 0.00 2.59
3950 11819 3.226777 CGATCTCAACCCTCCATCTACT 58.773 50.000 0.00 0.00 0.00 2.57
3951 11820 3.005261 CGATCTCAACCCTCCATCTACTG 59.995 52.174 0.00 0.00 0.00 2.74
3952 11821 3.757947 TCTCAACCCTCCATCTACTGA 57.242 47.619 0.00 0.00 0.00 3.41
3953 11822 4.061131 TCTCAACCCTCCATCTACTGAA 57.939 45.455 0.00 0.00 0.00 3.02
3955 11824 4.651503 TCTCAACCCTCCATCTACTGAATC 59.348 45.833 0.00 0.00 0.00 2.52
3956 11825 3.384789 TCAACCCTCCATCTACTGAATCG 59.615 47.826 0.00 0.00 0.00 3.34
3957 11826 3.033659 ACCCTCCATCTACTGAATCGT 57.966 47.619 0.00 0.00 0.00 3.73
3958 11827 3.375699 ACCCTCCATCTACTGAATCGTT 58.624 45.455 0.00 0.00 0.00 3.85
3959 11828 4.543689 ACCCTCCATCTACTGAATCGTTA 58.456 43.478 0.00 0.00 0.00 3.18
3960 11829 5.148502 ACCCTCCATCTACTGAATCGTTAT 58.851 41.667 0.00 0.00 0.00 1.89
3963 11832 6.385843 CCTCCATCTACTGAATCGTTATCTG 58.614 44.000 0.00 0.00 0.00 2.90
3964 11833 6.015856 CCTCCATCTACTGAATCGTTATCTGT 60.016 42.308 0.00 0.00 34.07 3.41
3965 11834 7.348080 TCCATCTACTGAATCGTTATCTGTT 57.652 36.000 0.00 0.00 32.26 3.16
3986 11855 7.165460 TGTTATAACAGCTAGCACTAACTGA 57.835 36.000 18.83 0.41 34.36 3.41
3987 11856 7.608153 TGTTATAACAGCTAGCACTAACTGAA 58.392 34.615 18.83 0.00 34.36 3.02
3988 11857 7.759886 TGTTATAACAGCTAGCACTAACTGAAG 59.240 37.037 18.83 0.00 34.36 3.02
3989 11858 4.873746 AACAGCTAGCACTAACTGAAGA 57.126 40.909 18.83 0.00 34.36 2.87
3990 11859 4.873746 ACAGCTAGCACTAACTGAAGAA 57.126 40.909 18.83 0.00 34.36 2.52
3991 11860 4.815269 ACAGCTAGCACTAACTGAAGAAG 58.185 43.478 18.83 0.00 34.36 2.85
3992 11861 4.282195 ACAGCTAGCACTAACTGAAGAAGT 59.718 41.667 18.83 0.00 42.60 3.01
3993 11862 5.477291 ACAGCTAGCACTAACTGAAGAAGTA 59.523 40.000 18.83 0.00 38.56 2.24
3994 11863 6.015350 ACAGCTAGCACTAACTGAAGAAGTAA 60.015 38.462 18.83 0.00 38.56 2.24
3995 11864 6.309251 CAGCTAGCACTAACTGAAGAAGTAAC 59.691 42.308 18.83 0.00 38.56 2.50
3997 11866 6.089685 GCTAGCACTAACTGAAGAAGTAACAC 59.910 42.308 10.63 0.00 38.56 3.32
3999 11868 5.054477 GCACTAACTGAAGAAGTAACACCA 58.946 41.667 0.00 0.00 38.56 4.17
4000 11869 5.701290 GCACTAACTGAAGAAGTAACACCAT 59.299 40.000 0.00 0.00 38.56 3.55
4001 11870 6.872020 GCACTAACTGAAGAAGTAACACCATA 59.128 38.462 0.00 0.00 38.56 2.74
4003 11872 7.061905 CACTAACTGAAGAAGTAACACCATACG 59.938 40.741 0.00 0.00 38.56 3.06
4004 11873 4.243270 ACTGAAGAAGTAACACCATACGC 58.757 43.478 0.00 0.00 37.36 4.42
4005 11874 4.021368 ACTGAAGAAGTAACACCATACGCT 60.021 41.667 0.00 0.00 37.36 5.07
4006 11875 4.242475 TGAAGAAGTAACACCATACGCTG 58.758 43.478 0.00 0.00 0.00 5.18
4007 11876 2.618053 AGAAGTAACACCATACGCTGC 58.382 47.619 0.00 0.00 0.00 5.25
4008 11877 2.028476 AGAAGTAACACCATACGCTGCA 60.028 45.455 0.00 0.00 0.00 4.41
4010 11879 1.275291 AGTAACACCATACGCTGCAGT 59.725 47.619 16.64 0.00 0.00 4.40
4011 11880 1.659098 GTAACACCATACGCTGCAGTC 59.341 52.381 16.64 6.83 0.00 3.51
4012 11881 0.673644 AACACCATACGCTGCAGTCC 60.674 55.000 16.64 0.00 0.00 3.85
4013 11882 1.219124 CACCATACGCTGCAGTCCT 59.781 57.895 16.64 0.16 0.00 3.85
4015 11884 1.522355 CCATACGCTGCAGTCCTGG 60.522 63.158 16.64 13.12 0.00 4.45
4016 11885 2.176273 CATACGCTGCAGTCCTGGC 61.176 63.158 16.64 0.00 0.00 4.85
4017 11886 2.659063 ATACGCTGCAGTCCTGGCA 61.659 57.895 16.64 0.00 39.32 4.92
4018 11887 1.976132 ATACGCTGCAGTCCTGGCAT 61.976 55.000 16.64 0.00 41.06 4.40
4019 11888 2.184020 TACGCTGCAGTCCTGGCATT 62.184 55.000 16.64 0.00 41.06 3.56
4020 11889 2.882876 GCTGCAGTCCTGGCATTG 59.117 61.111 16.64 0.00 41.06 2.82
4022 11891 1.677966 CTGCAGTCCTGGCATTGCT 60.678 57.895 5.25 0.00 41.06 3.91
4023 11892 1.654954 CTGCAGTCCTGGCATTGCTC 61.655 60.000 5.25 0.00 41.06 4.26
4025 11894 1.751927 CAGTCCTGGCATTGCTCCC 60.752 63.158 8.82 0.00 0.00 4.30
4026 11895 1.927527 AGTCCTGGCATTGCTCCCT 60.928 57.895 8.82 0.00 0.00 4.20
4028 11897 2.123982 CCTGGCATTGCTCCCTCC 60.124 66.667 8.82 0.00 0.00 4.30
4029 11898 2.687610 CCTGGCATTGCTCCCTCCT 61.688 63.158 8.82 0.00 0.00 3.69
4032 11901 1.304282 GGCATTGCTCCCTCCTTGA 59.696 57.895 8.82 0.00 0.00 3.02
4033 11902 0.750911 GGCATTGCTCCCTCCTTGAG 60.751 60.000 8.82 0.00 0.00 3.02
4034 11903 0.034670 GCATTGCTCCCTCCTTGAGT 60.035 55.000 0.16 0.00 32.31 3.41
4035 11904 1.747709 CATTGCTCCCTCCTTGAGTG 58.252 55.000 0.00 0.00 32.31 3.51
4036 11905 1.004044 CATTGCTCCCTCCTTGAGTGT 59.996 52.381 0.00 0.00 32.31 3.55
4037 11906 0.687354 TTGCTCCCTCCTTGAGTGTC 59.313 55.000 0.00 0.00 32.31 3.67
4038 11907 1.216710 GCTCCCTCCTTGAGTGTCG 59.783 63.158 0.00 0.00 32.31 4.35
4039 11908 1.251527 GCTCCCTCCTTGAGTGTCGA 61.252 60.000 0.00 0.00 32.31 4.20
4040 11909 0.528470 CTCCCTCCTTGAGTGTCGAC 59.472 60.000 9.11 9.11 0.00 4.20
4041 11910 1.213013 CCCTCCTTGAGTGTCGACG 59.787 63.158 11.62 0.00 0.00 5.12
4042 11911 1.524863 CCCTCCTTGAGTGTCGACGT 61.525 60.000 11.62 0.00 0.00 4.34
4044 11913 0.311165 CTCCTTGAGTGTCGACGTGT 59.689 55.000 11.62 0.00 0.00 4.49
4046 11915 0.663568 CCTTGAGTGTCGACGTGTCC 60.664 60.000 11.62 0.00 0.00 4.02
4047 11916 0.311165 CTTGAGTGTCGACGTGTCCT 59.689 55.000 11.62 1.18 0.00 3.85
4049 11918 0.816421 TGAGTGTCGACGTGTCCTCA 60.816 55.000 11.62 13.07 0.00 3.86
4050 11919 0.385723 GAGTGTCGACGTGTCCTCAC 60.386 60.000 11.62 11.61 40.79 3.51
4058 11927 3.712881 GTGTCCTCACGGCGTTGC 61.713 66.667 11.19 0.00 34.79 4.17
4078 11947 4.175489 CTGCTGCTCGCCATGCAC 62.175 66.667 0.00 0.00 38.05 4.57
4085 12428 3.284336 TCGCCATGCACGAGTAGT 58.716 55.556 5.10 0.00 33.96 2.73
4096 12439 1.269723 CACGAGTAGTGGTGCTGAAGA 59.730 52.381 0.00 0.00 46.77 2.87
4097 12440 1.961394 ACGAGTAGTGGTGCTGAAGAA 59.039 47.619 0.00 0.00 0.00 2.52
4100 12443 3.580731 GAGTAGTGGTGCTGAAGAACTC 58.419 50.000 0.00 0.00 0.00 3.01
4102 12445 0.034059 AGTGGTGCTGAAGAACTCCG 59.966 55.000 0.00 0.00 0.00 4.63
4103 12446 0.951040 GTGGTGCTGAAGAACTCCGG 60.951 60.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.540365 ATTTAGGCCGCCCCATCATG 60.540 55.000 5.55 0.00 35.39 3.07
195 200 5.544136 AAAATGTTTGCAAAGTGTTCACC 57.456 34.783 13.26 0.00 0.00 4.02
365 373 3.124466 TCGAAAATGTATCCGCACAACTG 59.876 43.478 0.00 0.00 30.84 3.16
366 374 3.331150 TCGAAAATGTATCCGCACAACT 58.669 40.909 0.00 0.00 30.84 3.16
367 375 3.733024 TCGAAAATGTATCCGCACAAC 57.267 42.857 0.00 0.00 30.84 3.32
368 376 4.955925 ATTCGAAAATGTATCCGCACAA 57.044 36.364 0.00 0.00 30.84 3.33
369 377 4.955925 AATTCGAAAATGTATCCGCACA 57.044 36.364 0.00 0.00 0.00 4.57
373 382 8.684655 CATTCATGAAATTCGAAAATGTATCCG 58.315 33.333 13.09 0.00 0.00 4.18
389 398 8.572185 TCACGGATTTAGAAAACATTCATGAAA 58.428 29.630 13.09 0.00 0.00 2.69
398 407 6.978343 AATCGATCACGGATTTAGAAAACA 57.022 33.333 0.00 0.00 40.21 2.83
399 408 8.575454 CAAAAATCGATCACGGATTTAGAAAAC 58.425 33.333 0.00 0.00 40.21 2.43
484 493 3.058450 CAAAATGGCGTGCTGAAAATCA 58.942 40.909 0.00 0.00 0.00 2.57
485 494 2.412770 CCAAAATGGCGTGCTGAAAATC 59.587 45.455 0.00 0.00 0.00 2.17
488 497 1.035923 TCCAAAATGGCGTGCTGAAA 58.964 45.000 0.00 0.00 37.47 2.69
489 498 1.000385 CTTCCAAAATGGCGTGCTGAA 60.000 47.619 0.00 0.00 37.47 3.02
490 499 0.597568 CTTCCAAAATGGCGTGCTGA 59.402 50.000 0.00 0.00 37.47 4.26
491 500 1.010419 GCTTCCAAAATGGCGTGCTG 61.010 55.000 0.00 0.00 37.47 4.41
558 596 0.027586 CGCTTATTCGGCCCTTTTCG 59.972 55.000 0.00 0.00 0.00 3.46
612 769 4.771356 TACACGTGCGCTCGAGGC 62.771 66.667 35.09 15.95 37.64 4.70
734 891 4.257510 TCTCTCTCATCGCGCCGC 62.258 66.667 0.00 0.00 0.00 6.53
735 892 2.352915 GTCTCTCTCATCGCGCCG 60.353 66.667 0.00 0.00 0.00 6.46
736 893 1.587613 GTGTCTCTCTCATCGCGCC 60.588 63.158 0.00 0.00 0.00 6.53
737 894 1.587613 GGTGTCTCTCTCATCGCGC 60.588 63.158 0.00 0.00 0.00 6.86
738 895 0.383590 ATGGTGTCTCTCTCATCGCG 59.616 55.000 0.00 0.00 0.00 5.87
739 896 1.406898 TGATGGTGTCTCTCTCATCGC 59.593 52.381 0.00 0.00 38.92 4.58
740 897 3.790152 TTGATGGTGTCTCTCTCATCG 57.210 47.619 0.00 0.00 38.92 3.84
741 898 5.273674 TGATTGATGGTGTCTCTCTCATC 57.726 43.478 0.00 0.00 37.21 2.92
742 899 5.688814 TTGATTGATGGTGTCTCTCTCAT 57.311 39.130 0.00 0.00 0.00 2.90
743 900 5.488262 TTTGATTGATGGTGTCTCTCTCA 57.512 39.130 0.00 0.00 0.00 3.27
744 901 6.111382 TGATTTGATTGATGGTGTCTCTCTC 58.889 40.000 0.00 0.00 0.00 3.20
745 902 6.058553 TGATTTGATTGATGGTGTCTCTCT 57.941 37.500 0.00 0.00 0.00 3.10
746 903 5.220815 GCTGATTTGATTGATGGTGTCTCTC 60.221 44.000 0.00 0.00 0.00 3.20
747 904 4.639310 GCTGATTTGATTGATGGTGTCTCT 59.361 41.667 0.00 0.00 0.00 3.10
748 905 4.201990 GGCTGATTTGATTGATGGTGTCTC 60.202 45.833 0.00 0.00 0.00 3.36
749 906 3.698040 GGCTGATTTGATTGATGGTGTCT 59.302 43.478 0.00 0.00 0.00 3.41
750 907 3.488047 CGGCTGATTTGATTGATGGTGTC 60.488 47.826 0.00 0.00 0.00 3.67
751 908 2.424601 CGGCTGATTTGATTGATGGTGT 59.575 45.455 0.00 0.00 0.00 4.16
752 909 2.684374 TCGGCTGATTTGATTGATGGTG 59.316 45.455 0.00 0.00 0.00 4.17
753 910 2.684881 GTCGGCTGATTTGATTGATGGT 59.315 45.455 0.00 0.00 0.00 3.55
754 911 2.286595 CGTCGGCTGATTTGATTGATGG 60.287 50.000 0.00 0.00 0.00 3.51
755 912 2.286595 CCGTCGGCTGATTTGATTGATG 60.287 50.000 0.00 0.00 0.00 3.07
756 913 1.942657 CCGTCGGCTGATTTGATTGAT 59.057 47.619 0.00 0.00 0.00 2.57
757 914 1.368641 CCGTCGGCTGATTTGATTGA 58.631 50.000 0.00 0.00 0.00 2.57
758 915 0.248215 GCCGTCGGCTGATTTGATTG 60.248 55.000 28.98 0.00 46.69 2.67
759 916 2.098293 GCCGTCGGCTGATTTGATT 58.902 52.632 28.98 0.00 46.69 2.57
760 917 3.813596 GCCGTCGGCTGATTTGAT 58.186 55.556 28.98 0.00 46.69 2.57
771 928 1.512996 TATCTTAGCCGGAGCCGTCG 61.513 60.000 5.05 0.00 41.25 5.12
772 929 0.672342 TTATCTTAGCCGGAGCCGTC 59.328 55.000 5.05 0.00 41.25 4.79
773 930 0.674534 CTTATCTTAGCCGGAGCCGT 59.325 55.000 5.05 0.00 41.25 5.68
774 931 0.038159 CCTTATCTTAGCCGGAGCCG 60.038 60.000 5.05 1.06 41.25 5.52
775 932 1.049402 ACCTTATCTTAGCCGGAGCC 58.951 55.000 5.05 0.00 41.25 4.70
776 933 2.102588 TCAACCTTATCTTAGCCGGAGC 59.897 50.000 5.05 0.00 40.32 4.70
777 934 4.561105 GATCAACCTTATCTTAGCCGGAG 58.439 47.826 5.05 0.00 0.00 4.63
778 935 3.323979 GGATCAACCTTATCTTAGCCGGA 59.676 47.826 5.05 0.00 35.41 5.14
779 936 3.071023 TGGATCAACCTTATCTTAGCCGG 59.929 47.826 0.00 0.00 39.86 6.13
780 937 4.336889 TGGATCAACCTTATCTTAGCCG 57.663 45.455 0.00 0.00 39.86 5.52
781 938 5.707764 GGAATGGATCAACCTTATCTTAGCC 59.292 44.000 0.00 0.00 39.86 3.93
782 939 6.299141 TGGAATGGATCAACCTTATCTTAGC 58.701 40.000 0.00 0.00 39.86 3.09
783 940 6.429385 GCTGGAATGGATCAACCTTATCTTAG 59.571 42.308 0.00 0.00 39.86 2.18
784 941 6.126507 TGCTGGAATGGATCAACCTTATCTTA 60.127 38.462 0.00 0.00 39.86 2.10
785 942 5.136105 GCTGGAATGGATCAACCTTATCTT 58.864 41.667 0.00 0.00 39.86 2.40
786 943 4.166725 TGCTGGAATGGATCAACCTTATCT 59.833 41.667 0.00 0.00 39.86 1.98
796 953 4.500375 GGCAAAAGTATGCTGGAATGGATC 60.500 45.833 0.00 0.00 45.68 3.36
802 959 1.173043 CGGGCAAAAGTATGCTGGAA 58.827 50.000 0.00 0.00 45.68 3.53
803 960 0.326595 TCGGGCAAAAGTATGCTGGA 59.673 50.000 0.00 0.00 45.68 3.86
804 961 0.451783 GTCGGGCAAAAGTATGCTGG 59.548 55.000 0.00 0.00 45.68 4.85
807 964 1.539827 AGTTGTCGGGCAAAAGTATGC 59.460 47.619 0.00 0.00 45.67 3.14
808 965 3.004315 ACAAGTTGTCGGGCAAAAGTATG 59.996 43.478 1.64 0.00 39.03 2.39
809 966 3.219281 ACAAGTTGTCGGGCAAAAGTAT 58.781 40.909 1.64 0.00 39.03 2.12
811 968 1.404035 GACAAGTTGTCGGGCAAAAGT 59.596 47.619 19.71 0.00 37.67 2.66
812 969 2.119671 GACAAGTTGTCGGGCAAAAG 57.880 50.000 19.71 0.00 37.67 2.27
821 978 0.947244 CTGCAGGTGGACAAGTTGTC 59.053 55.000 25.00 25.00 46.23 3.18
822 979 1.103398 GCTGCAGGTGGACAAGTTGT 61.103 55.000 17.12 8.61 0.00 3.32
823 980 0.820891 AGCTGCAGGTGGACAAGTTG 60.821 55.000 19.45 0.00 0.00 3.16
824 981 0.764890 TAGCTGCAGGTGGACAAGTT 59.235 50.000 28.10 0.00 0.00 2.66
825 982 0.322975 CTAGCTGCAGGTGGACAAGT 59.677 55.000 28.10 0.00 0.00 3.16
826 983 1.023513 GCTAGCTGCAGGTGGACAAG 61.024 60.000 30.48 19.05 42.31 3.16
827 984 1.003355 GCTAGCTGCAGGTGGACAA 60.003 57.895 30.48 9.25 42.31 3.18
828 985 2.665000 GCTAGCTGCAGGTGGACA 59.335 61.111 30.48 9.64 42.31 4.02
839 996 0.405585 TTTTTCTGGGCCTGCTAGCT 59.594 50.000 17.23 0.00 0.00 3.32
841 998 2.726821 TGATTTTTCTGGGCCTGCTAG 58.273 47.619 4.53 0.00 0.00 3.42
851 1031 1.336795 GGTGGCGGGTTGATTTTTCTG 60.337 52.381 0.00 0.00 0.00 3.02
858 1038 2.035626 CTTGGGTGGCGGGTTGAT 59.964 61.111 0.00 0.00 0.00 2.57
921 1141 0.037046 GGGCAGCTCCAAAAATGGTG 60.037 55.000 0.00 0.00 36.21 4.17
925 1145 4.545678 TGTATATGGGCAGCTCCAAAAAT 58.454 39.130 6.69 4.58 40.62 1.82
948 1171 1.083489 CGTCTCTCTCGCTCAGTCTT 58.917 55.000 0.00 0.00 0.00 3.01
983 1783 3.002656 GTCCATGTTGTGTGTTGTGAGAG 59.997 47.826 0.00 0.00 0.00 3.20
990 1790 3.281727 AGAGTGTCCATGTTGTGTGTT 57.718 42.857 0.00 0.00 0.00 3.32
991 1791 2.945008 CAAGAGTGTCCATGTTGTGTGT 59.055 45.455 0.00 0.00 0.00 3.72
992 1792 2.291465 CCAAGAGTGTCCATGTTGTGTG 59.709 50.000 0.00 0.00 0.00 3.82
993 1793 2.575532 CCAAGAGTGTCCATGTTGTGT 58.424 47.619 0.00 0.00 0.00 3.72
994 1794 1.267806 GCCAAGAGTGTCCATGTTGTG 59.732 52.381 0.00 0.00 0.00 3.33
995 1795 1.143684 AGCCAAGAGTGTCCATGTTGT 59.856 47.619 0.00 0.00 0.00 3.32
996 1796 1.808945 GAGCCAAGAGTGTCCATGTTG 59.191 52.381 0.00 0.00 0.00 3.33
997 1797 1.421268 TGAGCCAAGAGTGTCCATGTT 59.579 47.619 0.00 0.00 0.00 2.71
998 1798 1.059098 TGAGCCAAGAGTGTCCATGT 58.941 50.000 0.00 0.00 0.00 3.21
1011 1811 3.080641 CTCCATGGTGGTGAGCCA 58.919 61.111 12.58 0.00 43.73 4.75
1349 2170 5.241949 TCATGTACTTTGCCAAAATTACGGT 59.758 36.000 0.00 0.00 35.33 4.83
1380 2207 2.125552 GCCTGCAAAAATCCCGGC 60.126 61.111 0.00 0.00 0.00 6.13
1448 2284 1.984570 CTCCCGGAACAGCTGAGGA 60.985 63.158 23.35 15.85 0.00 3.71
1514 2775 2.829003 AAGAGCCGCTCGATCCGA 60.829 61.111 14.71 0.00 35.36 4.55
1623 3905 0.323633 TGGGAGACATGGTTGGCATG 60.324 55.000 0.00 0.00 30.96 4.06
1624 3906 0.323725 GTGGGAGACATGGTTGGCAT 60.324 55.000 0.00 0.00 30.96 4.40
1625 3907 1.074775 GTGGGAGACATGGTTGGCA 59.925 57.895 0.00 0.00 30.96 4.92
1627 3909 0.322816 CAGGTGGGAGACATGGTTGG 60.323 60.000 0.00 0.00 32.48 3.77
1631 3913 0.251354 CAGTCAGGTGGGAGACATGG 59.749 60.000 0.00 0.00 36.97 3.66
1632 3914 1.269958 TCAGTCAGGTGGGAGACATG 58.730 55.000 0.00 0.00 37.73 3.21
1633 3915 1.625818 GTTCAGTCAGGTGGGAGACAT 59.374 52.381 0.00 0.00 37.23 3.06
1635 3923 1.273886 GAGTTCAGTCAGGTGGGAGAC 59.726 57.143 0.00 0.00 35.02 3.36
1689 3999 3.777087 TCCTCTGCAAAATTCAATCCCA 58.223 40.909 0.00 0.00 0.00 4.37
1697 4007 3.443681 CCGGTAACATCCTCTGCAAAATT 59.556 43.478 0.00 0.00 0.00 1.82
1698 4008 3.016736 CCGGTAACATCCTCTGCAAAAT 58.983 45.455 0.00 0.00 0.00 1.82
1826 4137 0.945813 CTACTCGGGAGATGACGTCC 59.054 60.000 14.12 0.00 38.80 4.79
1832 4143 0.317103 CGAACGCTACTCGGGAGATG 60.317 60.000 2.08 0.00 43.86 2.90
1844 4155 3.941657 GAAGCTGCTCCCGAACGCT 62.942 63.158 1.00 0.00 0.00 5.07
1863 4174 3.264450 TGGAAGATCTTTCTCCCTTCACC 59.736 47.826 14.94 5.55 37.38 4.02
1970 4281 1.655099 GCACAAGCGTAATTGCATTGG 59.345 47.619 11.42 4.21 37.31 3.16
2014 4327 1.666904 GCATATTGTTCTGATGCGCG 58.333 50.000 0.00 0.00 36.89 6.86
2033 4346 3.814577 CCGGACTACTGGTTGTGAG 57.185 57.895 0.00 0.00 37.74 3.51
2074 4387 4.588528 AGGCCTGAACAACACAAACAATAT 59.411 37.500 3.11 0.00 0.00 1.28
2077 4390 2.165437 GAGGCCTGAACAACACAAACAA 59.835 45.455 12.00 0.00 0.00 2.83
2080 4393 2.023673 CAGAGGCCTGAACAACACAAA 58.976 47.619 12.00 0.00 43.02 2.83
2094 4407 7.609532 AGTGGATATCTATTTATTTGCAGAGGC 59.390 37.037 2.05 0.00 41.68 4.70
2135 5608 1.977129 AGGCCAGCATCCTCTCTATTC 59.023 52.381 5.01 0.00 0.00 1.75
2136 5609 1.698532 CAGGCCAGCATCCTCTCTATT 59.301 52.381 5.01 0.00 0.00 1.73
2137 5610 1.132913 TCAGGCCAGCATCCTCTCTAT 60.133 52.381 5.01 0.00 0.00 1.98
2138 5611 0.262876 TCAGGCCAGCATCCTCTCTA 59.737 55.000 5.01 0.00 0.00 2.43
2139 5612 0.619832 TTCAGGCCAGCATCCTCTCT 60.620 55.000 5.01 0.00 0.00 3.10
2140 5613 0.473326 ATTCAGGCCAGCATCCTCTC 59.527 55.000 5.01 0.00 0.00 3.20
2141 5614 0.473326 GATTCAGGCCAGCATCCTCT 59.527 55.000 5.01 0.00 0.00 3.69
2142 5615 0.182061 TGATTCAGGCCAGCATCCTC 59.818 55.000 5.01 0.00 0.00 3.71
2143 5616 0.106819 GTGATTCAGGCCAGCATCCT 60.107 55.000 5.01 0.00 0.00 3.24
2144 5617 0.394762 TGTGATTCAGGCCAGCATCC 60.395 55.000 5.01 0.00 0.00 3.51
2145 5618 1.466856 TTGTGATTCAGGCCAGCATC 58.533 50.000 5.01 2.47 0.00 3.91
2146 5619 1.927487 TTTGTGATTCAGGCCAGCAT 58.073 45.000 5.01 0.00 0.00 3.79
2147 5620 1.340889 GTTTTGTGATTCAGGCCAGCA 59.659 47.619 5.01 0.00 0.00 4.41
2148 5621 1.340889 TGTTTTGTGATTCAGGCCAGC 59.659 47.619 5.01 0.00 0.00 4.85
2149 5622 3.947910 ATGTTTTGTGATTCAGGCCAG 57.052 42.857 5.01 0.00 0.00 4.85
2150 5623 4.218200 CACTATGTTTTGTGATTCAGGCCA 59.782 41.667 5.01 0.00 36.38 5.36
2151 5624 4.380867 CCACTATGTTTTGTGATTCAGGCC 60.381 45.833 0.00 0.00 36.38 5.19
2152 5625 4.737054 CCACTATGTTTTGTGATTCAGGC 58.263 43.478 0.00 0.00 36.38 4.85
2153 5626 4.380867 GGCCACTATGTTTTGTGATTCAGG 60.381 45.833 0.00 0.00 36.38 3.86
2154 5627 4.460382 AGGCCACTATGTTTTGTGATTCAG 59.540 41.667 5.01 0.00 36.38 3.02
2162 5635 3.598019 ATTGCAGGCCACTATGTTTTG 57.402 42.857 5.01 0.00 0.00 2.44
2385 6042 4.429212 CGGTGGTCATCGTCGGCA 62.429 66.667 0.00 0.00 0.00 5.69
2470 6127 0.323360 TTAGCAGGACCATTGCCCAC 60.323 55.000 2.19 0.00 42.48 4.61
2652 6586 2.167281 ACCGACAGAGAAGATGGACATG 59.833 50.000 0.00 0.00 0.00 3.21
2850 6788 1.351017 ACCTCTCCGGCTTGAATTCAA 59.649 47.619 19.45 19.45 35.61 2.69
2857 6795 1.580845 CTGCAAACCTCTCCGGCTTG 61.581 60.000 0.00 0.00 40.96 4.01
3094 7095 6.734104 ACAGCTGCTAATTCTTAGAGTTTG 57.266 37.500 15.27 0.00 35.20 2.93
3449 8477 6.494842 TGATTTTGAGTCAAGTAACAACAGC 58.505 36.000 5.56 0.00 0.00 4.40
3450 8478 7.697691 ACTGATTTTGAGTCAAGTAACAACAG 58.302 34.615 5.56 10.88 0.00 3.16
3470 9448 4.093408 CGTGCAACAGCAAGTATAACTGAT 59.907 41.667 0.00 0.00 40.49 2.90
3503 10521 5.699097 ATAGCACGTACAACCAACAAATT 57.301 34.783 0.00 0.00 0.00 1.82
3651 11520 1.070786 TTCGGTCCTGACACAAGGC 59.929 57.895 0.00 0.00 37.24 4.35
3657 11526 5.655090 TCTGAATTATAGTTCGGTCCTGACA 59.345 40.000 14.46 0.00 36.19 3.58
3658 11527 6.145338 TCTGAATTATAGTTCGGTCCTGAC 57.855 41.667 14.46 0.00 36.19 3.51
3660 11529 6.642950 GTGATCTGAATTATAGTTCGGTCCTG 59.357 42.308 14.46 0.00 36.19 3.86
3661 11530 6.323996 TGTGATCTGAATTATAGTTCGGTCCT 59.676 38.462 14.46 3.80 36.19 3.85
3662 11531 6.513180 TGTGATCTGAATTATAGTTCGGTCC 58.487 40.000 14.46 9.29 36.19 4.46
3665 11534 7.429633 AGTCTGTGATCTGAATTATAGTTCGG 58.570 38.462 9.90 9.90 36.11 4.30
3666 11535 9.605955 CTAGTCTGTGATCTGAATTATAGTTCG 57.394 37.037 3.81 0.01 0.00 3.95
3667 11536 9.906660 CCTAGTCTGTGATCTGAATTATAGTTC 57.093 37.037 1.17 1.17 0.00 3.01
3668 11537 8.865090 CCCTAGTCTGTGATCTGAATTATAGTT 58.135 37.037 0.00 0.00 0.00 2.24
3669 11538 8.228206 TCCCTAGTCTGTGATCTGAATTATAGT 58.772 37.037 0.00 0.00 0.00 2.12
3670 11539 8.642935 TCCCTAGTCTGTGATCTGAATTATAG 57.357 38.462 0.00 0.00 0.00 1.31
3671 11540 9.607333 AATCCCTAGTCTGTGATCTGAATTATA 57.393 33.333 0.00 0.00 0.00 0.98
3673 11542 7.921041 AATCCCTAGTCTGTGATCTGAATTA 57.079 36.000 0.00 0.00 0.00 1.40
3675 11544 6.385176 TCAAATCCCTAGTCTGTGATCTGAAT 59.615 38.462 0.00 0.00 0.00 2.57
3676 11545 5.721480 TCAAATCCCTAGTCTGTGATCTGAA 59.279 40.000 0.00 0.00 0.00 3.02
3678 11547 5.453057 CCTCAAATCCCTAGTCTGTGATCTG 60.453 48.000 0.00 0.00 0.00 2.90
3680 11549 4.202305 CCCTCAAATCCCTAGTCTGTGATC 60.202 50.000 0.00 0.00 0.00 2.92
3681 11550 3.713764 CCCTCAAATCCCTAGTCTGTGAT 59.286 47.826 0.00 0.00 0.00 3.06
3683 11552 3.107601 TCCCTCAAATCCCTAGTCTGTG 58.892 50.000 0.00 0.00 0.00 3.66
3684 11553 3.491766 TCCCTCAAATCCCTAGTCTGT 57.508 47.619 0.00 0.00 0.00 3.41
3685 11554 4.033709 TCTTCCCTCAAATCCCTAGTCTG 58.966 47.826 0.00 0.00 0.00 3.51
3687 11556 5.437191 TTTCTTCCCTCAAATCCCTAGTC 57.563 43.478 0.00 0.00 0.00 2.59
3689 11558 5.136105 CCATTTCTTCCCTCAAATCCCTAG 58.864 45.833 0.00 0.00 0.00 3.02
3690 11559 4.079212 CCCATTTCTTCCCTCAAATCCCTA 60.079 45.833 0.00 0.00 0.00 3.53
3691 11560 3.310141 CCCATTTCTTCCCTCAAATCCCT 60.310 47.826 0.00 0.00 0.00 4.20
3692 11561 3.033909 CCCATTTCTTCCCTCAAATCCC 58.966 50.000 0.00 0.00 0.00 3.85
3693 11562 3.033909 CCCCATTTCTTCCCTCAAATCC 58.966 50.000 0.00 0.00 0.00 3.01
3694 11563 3.981212 TCCCCATTTCTTCCCTCAAATC 58.019 45.455 0.00 0.00 0.00 2.17
3695 11564 4.418395 TTCCCCATTTCTTCCCTCAAAT 57.582 40.909 0.00 0.00 0.00 2.32
3696 11565 3.913370 TTCCCCATTTCTTCCCTCAAA 57.087 42.857 0.00 0.00 0.00 2.69
3697 11566 3.901222 GTTTTCCCCATTTCTTCCCTCAA 59.099 43.478 0.00 0.00 0.00 3.02
3698 11567 3.142028 AGTTTTCCCCATTTCTTCCCTCA 59.858 43.478 0.00 0.00 0.00 3.86
3699 11568 3.764434 GAGTTTTCCCCATTTCTTCCCTC 59.236 47.826 0.00 0.00 0.00 4.30
3701 11570 2.492088 CGAGTTTTCCCCATTTCTTCCC 59.508 50.000 0.00 0.00 0.00 3.97
3702 11571 2.094700 GCGAGTTTTCCCCATTTCTTCC 60.095 50.000 0.00 0.00 0.00 3.46
3704 11573 1.893137 GGCGAGTTTTCCCCATTTCTT 59.107 47.619 0.00 0.00 0.00 2.52
3705 11574 1.545841 GGCGAGTTTTCCCCATTTCT 58.454 50.000 0.00 0.00 0.00 2.52
3706 11575 0.530744 GGGCGAGTTTTCCCCATTTC 59.469 55.000 0.00 0.00 36.50 2.17
3707 11576 0.178947 TGGGCGAGTTTTCCCCATTT 60.179 50.000 0.00 0.00 41.92 2.32
3709 11578 1.000896 CTGGGCGAGTTTTCCCCAT 60.001 57.895 0.00 0.00 40.69 4.00
3710 11579 1.497309 ATCTGGGCGAGTTTTCCCCA 61.497 55.000 0.00 0.00 41.92 4.96
3711 11580 0.748367 GATCTGGGCGAGTTTTCCCC 60.748 60.000 0.00 0.00 41.92 4.81
3712 11581 0.253327 AGATCTGGGCGAGTTTTCCC 59.747 55.000 0.00 0.00 42.93 3.97
3713 11582 1.373570 CAGATCTGGGCGAGTTTTCC 58.626 55.000 15.38 0.00 0.00 3.13
3714 11583 1.373570 CCAGATCTGGGCGAGTTTTC 58.626 55.000 31.14 0.00 46.81 2.29
3725 11594 2.867109 ACAAACACCTCCCAGATCTG 57.133 50.000 16.24 16.24 0.00 2.90
3726 11595 5.396884 GCTAATACAAACACCTCCCAGATCT 60.397 44.000 0.00 0.00 0.00 2.75
3727 11596 4.816925 GCTAATACAAACACCTCCCAGATC 59.183 45.833 0.00 0.00 0.00 2.75
3728 11597 4.475016 AGCTAATACAAACACCTCCCAGAT 59.525 41.667 0.00 0.00 0.00 2.90
3729 11598 3.844211 AGCTAATACAAACACCTCCCAGA 59.156 43.478 0.00 0.00 0.00 3.86
3730 11599 3.941483 CAGCTAATACAAACACCTCCCAG 59.059 47.826 0.00 0.00 0.00 4.45
3731 11600 3.329520 ACAGCTAATACAAACACCTCCCA 59.670 43.478 0.00 0.00 0.00 4.37
3732 11601 3.951663 ACAGCTAATACAAACACCTCCC 58.048 45.455 0.00 0.00 0.00 4.30
3733 11602 6.113411 ACATACAGCTAATACAAACACCTCC 58.887 40.000 0.00 0.00 0.00 4.30
3734 11603 7.611213 AACATACAGCTAATACAAACACCTC 57.389 36.000 0.00 0.00 0.00 3.85
3735 11604 7.996098 AAACATACAGCTAATACAAACACCT 57.004 32.000 0.00 0.00 0.00 4.00
3741 11610 9.321562 GGCTAAGTAAACATACAGCTAATACAA 57.678 33.333 0.00 0.00 0.00 2.41
3742 11611 8.479689 TGGCTAAGTAAACATACAGCTAATACA 58.520 33.333 0.00 0.00 0.00 2.29
3743 11612 8.882415 TGGCTAAGTAAACATACAGCTAATAC 57.118 34.615 0.00 0.00 0.00 1.89
3745 11614 8.210946 TGATGGCTAAGTAAACATACAGCTAAT 58.789 33.333 0.00 0.00 0.00 1.73
3747 11616 6.984474 GTGATGGCTAAGTAAACATACAGCTA 59.016 38.462 0.00 0.00 0.00 3.32
3748 11617 5.817816 GTGATGGCTAAGTAAACATACAGCT 59.182 40.000 0.00 0.00 0.00 4.24
3749 11618 5.276868 CGTGATGGCTAAGTAAACATACAGC 60.277 44.000 0.00 0.00 0.00 4.40
3750 11619 5.234329 CCGTGATGGCTAAGTAAACATACAG 59.766 44.000 0.00 0.00 0.00 2.74
3751 11620 5.113383 CCGTGATGGCTAAGTAAACATACA 58.887 41.667 0.00 0.00 0.00 2.29
3752 11621 5.652744 CCGTGATGGCTAAGTAAACATAC 57.347 43.478 0.00 0.00 0.00 2.39
3766 11635 2.166050 TCCATTGAATTTGCCGTGATGG 59.834 45.455 0.00 0.00 42.50 3.51
3767 11636 3.507103 TCCATTGAATTTGCCGTGATG 57.493 42.857 0.00 0.00 0.00 3.07
3769 11638 3.153130 TCTTCCATTGAATTTGCCGTGA 58.847 40.909 0.00 0.00 0.00 4.35
3770 11639 3.574284 TCTTCCATTGAATTTGCCGTG 57.426 42.857 0.00 0.00 0.00 4.94
3772 11641 3.792956 CGAATCTTCCATTGAATTTGCCG 59.207 43.478 0.00 0.00 0.00 5.69
3773 11642 4.997565 TCGAATCTTCCATTGAATTTGCC 58.002 39.130 0.00 0.00 0.00 4.52
3774 11643 7.420800 AGTATCGAATCTTCCATTGAATTTGC 58.579 34.615 0.00 0.00 0.00 3.68
3775 11644 9.793252 AAAGTATCGAATCTTCCATTGAATTTG 57.207 29.630 6.05 0.00 0.00 2.32
3776 11645 9.793252 CAAAGTATCGAATCTTCCATTGAATTT 57.207 29.630 6.05 0.00 0.00 1.82
3779 11648 6.183360 GCCAAAGTATCGAATCTTCCATTGAA 60.183 38.462 6.05 0.00 0.00 2.69
3780 11649 5.296780 GCCAAAGTATCGAATCTTCCATTGA 59.703 40.000 6.05 0.00 0.00 2.57
3782 11651 4.580580 GGCCAAAGTATCGAATCTTCCATT 59.419 41.667 0.00 0.00 0.00 3.16
3783 11652 4.137543 GGCCAAAGTATCGAATCTTCCAT 58.862 43.478 0.00 0.00 0.00 3.41
3784 11653 3.054728 TGGCCAAAGTATCGAATCTTCCA 60.055 43.478 0.61 6.78 0.00 3.53
3785 11654 3.541632 TGGCCAAAGTATCGAATCTTCC 58.458 45.455 0.61 4.77 0.00 3.46
3786 11655 3.002759 GCTGGCCAAAGTATCGAATCTTC 59.997 47.826 7.01 0.00 0.00 2.87
3787 11656 2.945668 GCTGGCCAAAGTATCGAATCTT 59.054 45.455 7.01 0.00 0.00 2.40
3788 11657 2.565841 GCTGGCCAAAGTATCGAATCT 58.434 47.619 7.01 0.00 0.00 2.40
3789 11658 1.604278 GGCTGGCCAAAGTATCGAATC 59.396 52.381 7.01 0.00 35.81 2.52
3790 11659 1.064758 TGGCTGGCCAAAGTATCGAAT 60.065 47.619 12.27 0.00 44.12 3.34
3791 11660 0.326595 TGGCTGGCCAAAGTATCGAA 59.673 50.000 12.27 0.00 44.12 3.71
3792 11661 1.987213 TGGCTGGCCAAAGTATCGA 59.013 52.632 12.27 0.00 44.12 3.59
3793 11662 4.635769 TGGCTGGCCAAAGTATCG 57.364 55.556 12.27 0.00 44.12 2.92
3808 11677 4.910256 TATAAAGGCAGCCGGGTTGTGG 62.910 54.545 1.64 0.00 0.00 4.17
3809 11678 0.965363 ATAAAGGCAGCCGGGTTGTG 60.965 55.000 1.64 0.00 0.00 3.33
3810 11679 0.621609 TATAAAGGCAGCCGGGTTGT 59.378 50.000 1.64 3.03 0.00 3.32
3811 11680 1.308998 CTATAAAGGCAGCCGGGTTG 58.691 55.000 1.64 6.50 0.00 3.77
3812 11681 0.182775 CCTATAAAGGCAGCCGGGTT 59.817 55.000 1.64 4.51 35.64 4.11
3813 11682 1.837090 CCTATAAAGGCAGCCGGGT 59.163 57.895 5.55 0.00 35.64 5.28
3814 11683 4.800554 CCTATAAAGGCAGCCGGG 57.199 61.111 5.55 0.00 35.64 5.73
3822 11691 1.747206 AGCGCTTGCCACCTATAAAGG 60.747 52.381 2.64 0.00 44.18 3.11
3823 11692 1.599542 GAGCGCTTGCCACCTATAAAG 59.400 52.381 13.26 0.00 40.41 1.85
3825 11694 0.179056 GGAGCGCTTGCCACCTATAA 60.179 55.000 13.26 0.00 40.41 0.98
3826 11695 1.445942 GGAGCGCTTGCCACCTATA 59.554 57.895 13.26 0.00 40.41 1.31
3828 11697 4.096003 GGGAGCGCTTGCCACCTA 62.096 66.667 13.26 0.00 40.41 3.08
3840 11709 2.203209 CCACCTATTGCCGGGAGC 60.203 66.667 2.18 0.00 44.14 4.70
3841 11710 0.254747 TTTCCACCTATTGCCGGGAG 59.745 55.000 2.18 0.00 0.00 4.30
3842 11711 0.254747 CTTTCCACCTATTGCCGGGA 59.745 55.000 2.18 0.00 0.00 5.14
3843 11712 0.034477 ACTTTCCACCTATTGCCGGG 60.034 55.000 2.18 0.00 0.00 5.73
3845 11714 3.340034 TGTTACTTTCCACCTATTGCCG 58.660 45.455 0.00 0.00 0.00 5.69
3846 11715 4.332828 ACTGTTACTTTCCACCTATTGCC 58.667 43.478 0.00 0.00 0.00 4.52
3848 11717 9.715121 TTAGTTACTGTTACTTTCCACCTATTG 57.285 33.333 4.66 0.00 0.00 1.90
3849 11718 9.716531 GTTAGTTACTGTTACTTTCCACCTATT 57.283 33.333 4.66 0.00 0.00 1.73
3850 11719 9.097946 AGTTAGTTACTGTTACTTTCCACCTAT 57.902 33.333 4.66 0.00 35.19 2.57
3851 11720 8.482852 AGTTAGTTACTGTTACTTTCCACCTA 57.517 34.615 4.66 0.00 35.19 3.08
3852 11721 7.370905 AGTTAGTTACTGTTACTTTCCACCT 57.629 36.000 4.66 0.00 35.19 4.00
3858 11727 9.599866 ACCGTTTTAGTTAGTTACTGTTACTTT 57.400 29.630 4.66 0.00 37.73 2.66
3860 11729 9.678941 GTACCGTTTTAGTTAGTTACTGTTACT 57.321 33.333 4.75 4.75 37.73 2.24
3861 11730 9.458374 TGTACCGTTTTAGTTAGTTACTGTTAC 57.542 33.333 0.00 0.00 37.73 2.50
3863 11732 8.197439 ACTGTACCGTTTTAGTTAGTTACTGTT 58.803 33.333 0.00 0.00 37.73 3.16
3864 11733 7.716612 ACTGTACCGTTTTAGTTAGTTACTGT 58.283 34.615 0.00 0.00 37.73 3.55
3865 11734 9.334693 CTACTGTACCGTTTTAGTTAGTTACTG 57.665 37.037 0.00 0.00 37.73 2.74
3866 11735 9.284968 TCTACTGTACCGTTTTAGTTAGTTACT 57.715 33.333 0.00 0.00 41.04 2.24
3868 11737 9.062524 TGTCTACTGTACCGTTTTAGTTAGTTA 57.937 33.333 0.00 0.00 0.00 2.24
3869 11738 7.940850 TGTCTACTGTACCGTTTTAGTTAGTT 58.059 34.615 0.00 0.00 0.00 2.24
3870 11739 7.510549 TGTCTACTGTACCGTTTTAGTTAGT 57.489 36.000 0.00 0.00 0.00 2.24
3871 11740 8.457261 AGATGTCTACTGTACCGTTTTAGTTAG 58.543 37.037 0.00 0.00 0.00 2.34
3872 11741 8.340618 AGATGTCTACTGTACCGTTTTAGTTA 57.659 34.615 0.00 0.00 0.00 2.24
3873 11742 7.224522 AGATGTCTACTGTACCGTTTTAGTT 57.775 36.000 0.00 0.00 0.00 2.24
3876 11745 7.243487 CGTTAGATGTCTACTGTACCGTTTTA 58.757 38.462 0.00 0.00 0.00 1.52
3877 11746 6.088824 CGTTAGATGTCTACTGTACCGTTTT 58.911 40.000 0.00 0.00 0.00 2.43
3878 11747 5.392380 CCGTTAGATGTCTACTGTACCGTTT 60.392 44.000 0.00 0.00 0.00 3.60
3879 11748 4.095483 CCGTTAGATGTCTACTGTACCGTT 59.905 45.833 0.00 0.00 0.00 4.44
3880 11749 3.624861 CCGTTAGATGTCTACTGTACCGT 59.375 47.826 0.00 0.00 0.00 4.83
3881 11750 3.624861 ACCGTTAGATGTCTACTGTACCG 59.375 47.826 0.00 0.00 0.00 4.02
3882 11751 4.260538 CGACCGTTAGATGTCTACTGTACC 60.261 50.000 0.00 0.00 0.00 3.34
3883 11752 4.568359 TCGACCGTTAGATGTCTACTGTAC 59.432 45.833 0.00 0.00 0.00 2.90
3884 11753 4.568359 GTCGACCGTTAGATGTCTACTGTA 59.432 45.833 3.51 0.00 0.00 2.74
3886 11755 3.543656 CGTCGACCGTTAGATGTCTACTG 60.544 52.174 10.58 0.00 0.00 2.74
3887 11756 2.606725 CGTCGACCGTTAGATGTCTACT 59.393 50.000 10.58 0.00 0.00 2.57
3889 11758 2.604914 GTCGTCGACCGTTAGATGTCTA 59.395 50.000 14.60 0.00 37.94 2.59
3890 11759 1.396301 GTCGTCGACCGTTAGATGTCT 59.604 52.381 14.60 0.00 37.94 3.41
3892 11761 0.095935 CGTCGTCGACCGTTAGATGT 59.904 55.000 19.29 0.00 39.71 3.06
3893 11762 0.371301 TCGTCGTCGACCGTTAGATG 59.629 55.000 19.29 6.62 41.35 2.90
3894 11763 1.078709 TTCGTCGTCGACCGTTAGAT 58.921 50.000 19.29 0.00 46.03 1.98
3895 11764 0.163788 GTTCGTCGTCGACCGTTAGA 59.836 55.000 19.29 7.73 46.03 2.10
3896 11765 1.116759 CGTTCGTCGTCGACCGTTAG 61.117 60.000 19.29 5.40 44.46 2.34
3897 11766 1.154672 CGTTCGTCGTCGACCGTTA 60.155 57.895 19.29 0.34 44.46 3.18
3902 11771 0.970606 CTTTACCGTTCGTCGTCGAC 59.029 55.000 15.51 15.51 46.03 4.20
3903 11772 0.586319 ACTTTACCGTTCGTCGTCGA 59.414 50.000 0.00 0.00 44.66 4.20
3904 11773 0.699151 CACTTTACCGTTCGTCGTCG 59.301 55.000 0.00 0.00 37.94 5.12
3905 11774 1.974680 CTCACTTTACCGTTCGTCGTC 59.025 52.381 0.00 0.00 37.94 4.20
3906 11775 1.335324 CCTCACTTTACCGTTCGTCGT 60.335 52.381 0.00 0.00 37.94 4.34
3907 11776 1.334054 CCTCACTTTACCGTTCGTCG 58.666 55.000 0.00 0.00 39.52 5.12
3909 11778 0.665369 CGCCTCACTTTACCGTTCGT 60.665 55.000 0.00 0.00 0.00 3.85
3910 11779 1.952266 GCGCCTCACTTTACCGTTCG 61.952 60.000 0.00 0.00 0.00 3.95
3913 11782 2.221906 ATCGCGCCTCACTTTACCGT 62.222 55.000 0.00 0.00 0.00 4.83
3914 11783 1.480219 GATCGCGCCTCACTTTACCG 61.480 60.000 0.00 0.00 0.00 4.02
3915 11784 0.179108 AGATCGCGCCTCACTTTACC 60.179 55.000 0.00 0.00 0.00 2.85
3918 11787 0.037326 TTGAGATCGCGCCTCACTTT 60.037 50.000 23.90 0.25 40.05 2.66
3922 11791 2.184322 GGTTGAGATCGCGCCTCA 59.816 61.111 21.46 21.46 38.74 3.86
3923 11792 2.586357 GGGTTGAGATCGCGCCTC 60.586 66.667 17.59 17.59 0.00 4.70
3929 11798 3.005261 CAGTAGATGGAGGGTTGAGATCG 59.995 52.174 0.00 0.00 0.00 3.69
3931 11800 4.271807 TCAGTAGATGGAGGGTTGAGAT 57.728 45.455 0.00 0.00 0.00 2.75
3932 11801 3.757947 TCAGTAGATGGAGGGTTGAGA 57.242 47.619 0.00 0.00 0.00 3.27
3933 11802 4.500545 CGATTCAGTAGATGGAGGGTTGAG 60.501 50.000 0.00 0.00 0.00 3.02
3934 11803 3.384789 CGATTCAGTAGATGGAGGGTTGA 59.615 47.826 0.00 0.00 0.00 3.18
3935 11804 3.133003 ACGATTCAGTAGATGGAGGGTTG 59.867 47.826 0.00 0.00 0.00 3.77
3936 11805 3.375699 ACGATTCAGTAGATGGAGGGTT 58.624 45.455 0.00 0.00 0.00 4.11
3937 11806 3.033659 ACGATTCAGTAGATGGAGGGT 57.966 47.619 0.00 0.00 0.00 4.34
3939 11808 6.015856 ACAGATAACGATTCAGTAGATGGAGG 60.016 42.308 0.00 0.00 0.00 4.30
3940 11809 6.976088 ACAGATAACGATTCAGTAGATGGAG 58.024 40.000 0.00 0.00 0.00 3.86
3941 11810 6.961360 ACAGATAACGATTCAGTAGATGGA 57.039 37.500 0.00 0.00 0.00 3.41
3963 11832 7.974501 TCTTCAGTTAGTGCTAGCTGTTATAAC 59.025 37.037 17.23 15.53 42.58 1.89
3964 11833 8.063200 TCTTCAGTTAGTGCTAGCTGTTATAA 57.937 34.615 17.23 5.11 42.58 0.98
3965 11834 7.640597 TCTTCAGTTAGTGCTAGCTGTTATA 57.359 36.000 17.23 0.00 42.58 0.98
3968 11837 4.873746 TCTTCAGTTAGTGCTAGCTGTT 57.126 40.909 17.23 3.89 42.58 3.16
3969 11838 4.282195 ACTTCTTCAGTTAGTGCTAGCTGT 59.718 41.667 17.23 5.43 42.58 4.40
3971 11840 6.015350 TGTTACTTCTTCAGTTAGTGCTAGCT 60.015 38.462 17.23 0.00 36.88 3.32
3973 11842 6.586844 GGTGTTACTTCTTCAGTTAGTGCTAG 59.413 42.308 0.00 0.00 36.88 3.42
3974 11843 6.041182 TGGTGTTACTTCTTCAGTTAGTGCTA 59.959 38.462 0.00 0.00 36.88 3.49
3975 11844 5.163343 TGGTGTTACTTCTTCAGTTAGTGCT 60.163 40.000 0.00 0.00 36.88 4.40
3976 11845 5.054477 TGGTGTTACTTCTTCAGTTAGTGC 58.946 41.667 0.00 0.00 36.88 4.40
3977 11846 7.061905 CGTATGGTGTTACTTCTTCAGTTAGTG 59.938 40.741 0.00 0.00 36.88 2.74
3978 11847 7.088905 CGTATGGTGTTACTTCTTCAGTTAGT 58.911 38.462 0.00 0.00 36.88 2.24
3979 11848 6.034683 GCGTATGGTGTTACTTCTTCAGTTAG 59.965 42.308 0.00 0.00 36.88 2.34
3980 11849 5.865552 GCGTATGGTGTTACTTCTTCAGTTA 59.134 40.000 0.00 0.00 36.88 2.24
3982 11851 4.021368 AGCGTATGGTGTTACTTCTTCAGT 60.021 41.667 0.00 0.00 39.87 3.41
3983 11852 4.327357 CAGCGTATGGTGTTACTTCTTCAG 59.673 45.833 5.95 0.00 38.78 3.02
3984 11853 4.242475 CAGCGTATGGTGTTACTTCTTCA 58.758 43.478 5.95 0.00 38.78 3.02
3985 11854 3.062234 GCAGCGTATGGTGTTACTTCTTC 59.938 47.826 15.20 0.00 45.36 2.87
3986 11855 3.000727 GCAGCGTATGGTGTTACTTCTT 58.999 45.455 15.20 0.00 45.36 2.52
3987 11856 2.028476 TGCAGCGTATGGTGTTACTTCT 60.028 45.455 15.20 0.00 45.36 2.85
3988 11857 2.343101 TGCAGCGTATGGTGTTACTTC 58.657 47.619 15.20 0.00 45.36 3.01
3989 11858 2.289444 ACTGCAGCGTATGGTGTTACTT 60.289 45.455 15.27 0.00 45.36 2.24
3990 11859 1.275291 ACTGCAGCGTATGGTGTTACT 59.725 47.619 15.27 0.00 45.36 2.24
3991 11860 1.659098 GACTGCAGCGTATGGTGTTAC 59.341 52.381 15.27 0.17 45.36 2.50
3992 11861 1.404986 GGACTGCAGCGTATGGTGTTA 60.405 52.381 15.27 4.82 45.36 2.41
3993 11862 0.673644 GGACTGCAGCGTATGGTGTT 60.674 55.000 15.27 0.89 45.36 3.32
3994 11863 1.079127 GGACTGCAGCGTATGGTGT 60.079 57.895 15.27 0.00 45.36 4.16
3995 11864 1.086067 CAGGACTGCAGCGTATGGTG 61.086 60.000 15.27 9.83 46.34 4.17
3997 11866 1.522355 CCAGGACTGCAGCGTATGG 60.522 63.158 15.27 13.22 0.00 2.74
3999 11868 1.976132 ATGCCAGGACTGCAGCGTAT 61.976 55.000 15.27 0.00 42.92 3.06
4000 11869 2.184020 AATGCCAGGACTGCAGCGTA 62.184 55.000 15.27 0.00 42.92 4.42
4001 11870 3.557903 AATGCCAGGACTGCAGCGT 62.558 57.895 15.27 5.55 42.92 5.07
4003 11872 2.882876 CAATGCCAGGACTGCAGC 59.117 61.111 15.27 6.61 42.92 5.25
4004 11873 1.654954 GAGCAATGCCAGGACTGCAG 61.655 60.000 13.48 13.48 42.92 4.41
4005 11874 1.676635 GAGCAATGCCAGGACTGCA 60.677 57.895 0.00 0.00 43.97 4.41
4006 11875 2.413142 GGAGCAATGCCAGGACTGC 61.413 63.158 0.00 0.00 34.96 4.40
4007 11876 1.751927 GGGAGCAATGCCAGGACTG 60.752 63.158 0.00 0.00 0.00 3.51
4008 11877 1.919600 GAGGGAGCAATGCCAGGACT 61.920 60.000 0.00 0.00 0.00 3.85
4010 11879 2.683465 GGAGGGAGCAATGCCAGGA 61.683 63.158 0.00 0.00 0.00 3.86
4011 11880 2.123982 GGAGGGAGCAATGCCAGG 60.124 66.667 0.00 0.00 0.00 4.45
4012 11881 1.035932 CAAGGAGGGAGCAATGCCAG 61.036 60.000 0.00 0.00 0.00 4.85
4013 11882 1.000521 CAAGGAGGGAGCAATGCCA 60.001 57.895 0.00 0.00 0.00 4.92
4015 11884 0.034670 ACTCAAGGAGGGAGCAATGC 60.035 55.000 0.00 0.00 35.79 3.56
4016 11885 1.004044 ACACTCAAGGAGGGAGCAATG 59.996 52.381 1.91 0.00 34.53 2.82
4017 11886 1.280421 GACACTCAAGGAGGGAGCAAT 59.720 52.381 1.91 0.00 34.53 3.56
4018 11887 0.687354 GACACTCAAGGAGGGAGCAA 59.313 55.000 1.91 0.00 34.53 3.91
4019 11888 1.536073 CGACACTCAAGGAGGGAGCA 61.536 60.000 1.91 0.00 34.53 4.26
4020 11889 1.216710 CGACACTCAAGGAGGGAGC 59.783 63.158 1.91 0.00 34.53 4.70
4022 11891 1.241990 CGTCGACACTCAAGGAGGGA 61.242 60.000 17.16 0.00 34.53 4.20
4023 11892 1.213013 CGTCGACACTCAAGGAGGG 59.787 63.158 17.16 0.00 39.30 4.30
4025 11894 0.311165 ACACGTCGACACTCAAGGAG 59.689 55.000 17.16 0.00 35.52 3.69
4026 11895 0.309922 GACACGTCGACACTCAAGGA 59.690 55.000 17.16 0.00 0.00 3.36
4028 11897 0.311165 AGGACACGTCGACACTCAAG 59.689 55.000 17.16 0.00 0.00 3.02
4029 11898 0.309922 GAGGACACGTCGACACTCAA 59.690 55.000 17.16 0.00 0.00 3.02
4032 11901 1.653115 GTGAGGACACGTCGACACT 59.347 57.895 17.16 4.94 37.28 3.55
4033 11902 4.223514 GTGAGGACACGTCGACAC 57.776 61.111 17.16 0.00 37.28 3.67
4068 11937 1.153842 CACTACTCGTGCATGGCGA 60.154 57.895 5.98 1.49 36.72 5.54
4069 11938 2.167219 CCACTACTCGTGCATGGCG 61.167 63.158 5.98 0.00 42.42 5.69
4070 11939 1.079127 ACCACTACTCGTGCATGGC 60.079 57.895 5.98 0.00 42.42 4.40
4071 11940 2.754648 CACCACTACTCGTGCATGG 58.245 57.895 5.98 2.01 42.42 3.66
4076 11945 1.269723 TCTTCAGCACCACTACTCGTG 59.730 52.381 0.00 0.00 43.41 4.35
4077 11946 1.617322 TCTTCAGCACCACTACTCGT 58.383 50.000 0.00 0.00 0.00 4.18
4078 11947 2.029828 AGTTCTTCAGCACCACTACTCG 60.030 50.000 0.00 0.00 0.00 4.18
4085 12428 1.371183 CCGGAGTTCTTCAGCACCA 59.629 57.895 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.