Multiple sequence alignment - TraesCS7D01G512500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G512500 chr7D 100.000 4083 0 0 1 4083 614108227 614104145 0.000000e+00 7540.0
1 TraesCS7D01G512500 chr7B 89.110 2461 165 36 1009 3418 705897312 705894904 0.000000e+00 2964.0
2 TraesCS7D01G512500 chr7B 92.084 379 22 5 3705 4077 705894702 705894326 1.010000e-145 527.0
3 TraesCS7D01G512500 chr7B 92.568 296 17 5 483 775 663837927 663837634 1.760000e-113 420.0
4 TraesCS7D01G512500 chr7B 86.424 302 37 3 172 472 705944413 705944115 1.090000e-85 327.0
5 TraesCS7D01G512500 chr7B 96.273 161 6 0 2 162 705946141 705945981 8.700000e-67 265.0
6 TraesCS7D01G512500 chr7A 92.778 1634 86 13 2466 4083 706169720 706168103 0.000000e+00 2335.0
7 TraesCS7D01G512500 chr7A 83.744 1298 124 34 843 2078 706171792 706170520 0.000000e+00 1147.0
8 TraesCS7D01G512500 chr7A 89.597 471 46 3 2 472 706172718 706172251 2.720000e-166 595.0
9 TraesCS7D01G512500 chr7A 89.607 356 34 3 2096 2448 706170264 706169909 2.240000e-122 449.0
10 TraesCS7D01G512500 chr7A 82.759 87 14 1 376 462 650555089 650555174 4.380000e-10 76.8
11 TraesCS7D01G512500 chr4B 78.316 867 130 39 1027 1870 587554353 587553522 1.310000e-139 507.0
12 TraesCS7D01G512500 chr2B 92.053 302 20 3 476 775 142654824 142654525 4.880000e-114 422.0
13 TraesCS7D01G512500 chr1B 91.749 303 22 3 476 777 484457853 484457553 6.310000e-113 418.0
14 TraesCS7D01G512500 chr1B 91.176 306 22 5 476 779 374925319 374925621 1.060000e-110 411.0
15 TraesCS7D01G512500 chr1B 91.419 303 21 5 476 775 683991874 683992174 1.060000e-110 411.0
16 TraesCS7D01G512500 chr5D 91.262 309 22 4 470 775 536022029 536022335 2.270000e-112 416.0
17 TraesCS7D01G512500 chr2D 91.694 301 22 3 476 775 649373824 649373526 8.170000e-112 414.0
18 TraesCS7D01G512500 chr2D 82.474 97 16 1 366 462 81945757 81945852 2.620000e-12 84.2
19 TraesCS7D01G512500 chr2A 91.447 304 22 3 474 775 729554943 729555244 8.170000e-112 414.0
20 TraesCS7D01G512500 chr2A 91.205 307 22 5 476 779 743327492 743327796 2.940000e-111 412.0
21 TraesCS7D01G512500 chr1A 80.083 482 62 23 1396 1867 510313252 510313709 1.090000e-85 327.0
22 TraesCS7D01G512500 chr1A 85.057 87 12 1 376 462 57965172 57965087 2.020000e-13 87.9
23 TraesCS7D01G512500 chr4A 80.920 435 55 20 1443 1867 417219210 417219626 6.590000e-83 318.0
24 TraesCS7D01G512500 chr4A 80.690 435 56 20 1443 1867 417269551 417269967 3.060000e-81 313.0
25 TraesCS7D01G512500 chrUn 80.690 435 56 20 1443 1867 340793171 340793587 3.060000e-81 313.0
26 TraesCS7D01G512500 chr6A 79.545 484 62 25 1394 1867 553944929 553945385 1.100000e-80 311.0
27 TraesCS7D01G512500 chr3A 83.281 317 41 9 1552 1867 349285129 349285434 8.640000e-72 281.0
28 TraesCS7D01G512500 chr5A 90.909 55 4 1 3586 3640 37939200 37939147 5.660000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G512500 chr7D 614104145 614108227 4082 True 7540.0 7540 100.0000 1 4083 1 chr7D.!!$R1 4082
1 TraesCS7D01G512500 chr7B 705894326 705897312 2986 True 1745.5 2964 90.5970 1009 4077 2 chr7B.!!$R2 3068
2 TraesCS7D01G512500 chr7B 705944115 705946141 2026 True 296.0 327 91.3485 2 472 2 chr7B.!!$R3 470
3 TraesCS7D01G512500 chr7A 706168103 706172718 4615 True 1131.5 2335 88.9315 2 4083 4 chr7A.!!$R1 4081
4 TraesCS7D01G512500 chr4B 587553522 587554353 831 True 507.0 507 78.3160 1027 1870 1 chr4B.!!$R1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 2110 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 F
725 2285 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.00 0.00 0.00 4.02 F
750 2310 0.102300 TGCACGTATGTATGAGCGCT 59.898 50.0 11.27 11.27 32.51 5.92 F
913 2873 0.107165 GGAAGGTCAGCCCATACACC 60.107 60.0 0.00 0.00 34.66 4.16 F
1190 3177 0.535335 ATCATACACCTTCACCGCGT 59.465 50.0 4.92 0.00 0.00 6.01 F
2478 4942 0.955905 TTTTGGCACCGAGCTTAACC 59.044 50.0 0.00 0.00 44.79 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 4753 0.109723 AGGTTAAGCTCGGTGCCAAA 59.890 50.000 0.12 0.00 44.23 3.28 R
2628 5092 2.265367 TGATACCTTCTTGGCACCAGA 58.735 47.619 0.00 0.00 40.22 3.86 R
2629 5093 2.787473 TGATACCTTCTTGGCACCAG 57.213 50.000 0.00 0.00 40.22 4.00 R
2793 5259 2.036006 TAACCATTGGCCACGACGC 61.036 57.895 3.88 0.00 0.00 5.19 R
3006 5472 2.187958 CCCTGATGTACTGAGGAACCA 58.812 52.381 6.89 0.00 0.00 3.67 R
3893 6444 1.000938 GCTCTGTTGGAAGCCAAACTG 60.001 52.381 0.00 1.13 45.73 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 0.037882 CTCTTCGCTGCCAGTCTTGA 60.038 55.000 0.00 0.00 0.00 3.02
168 169 4.766272 TCTCTTGAGAGACGGGGG 57.234 61.111 6.62 0.00 45.48 5.40
169 170 1.774966 TCTCTTGAGAGACGGGGGT 59.225 57.895 6.62 0.00 45.48 4.95
275 1834 3.223589 GGTGCGCCCAACCTGTTT 61.224 61.111 4.45 0.00 0.00 2.83
279 1838 1.040339 TGCGCCCAACCTGTTTTCTT 61.040 50.000 4.18 0.00 0.00 2.52
290 1849 3.287222 CCTGTTTTCTTTGGTCCAGTGA 58.713 45.455 0.00 0.00 0.00 3.41
291 1850 3.891366 CCTGTTTTCTTTGGTCCAGTGAT 59.109 43.478 0.00 0.00 0.00 3.06
293 1852 5.534654 CCTGTTTTCTTTGGTCCAGTGATTA 59.465 40.000 0.00 0.00 0.00 1.75
308 1867 1.322442 GATTAACAGCAGGCCCCATC 58.678 55.000 0.00 0.00 0.00 3.51
315 1874 2.823758 GCAGGCCCCATCCTCCTAC 61.824 68.421 0.00 0.00 33.25 3.18
319 1878 0.474660 GGCCCCATCCTCCTACTCAT 60.475 60.000 0.00 0.00 0.00 2.90
340 1899 0.319083 ACCGACTCCGCATACAAACA 59.681 50.000 0.00 0.00 0.00 2.83
342 1901 1.801771 CCGACTCCGCATACAAACAAA 59.198 47.619 0.00 0.00 0.00 2.83
348 1907 6.569179 ACTCCGCATACAAACAAAATAAGT 57.431 33.333 0.00 0.00 0.00 2.24
350 1909 8.276252 ACTCCGCATACAAACAAAATAAGTAT 57.724 30.769 0.00 0.00 0.00 2.12
354 1913 8.582930 CCGCATACAAACAAAATAAGTATTGTG 58.417 33.333 0.48 0.48 39.57 3.33
364 1923 9.323985 ACAAAATAAGTATTGTGTTTGCATGTT 57.676 25.926 1.65 0.00 40.32 2.71
389 1948 4.517285 TGCCAAAATTTTGCACCACTTTA 58.483 34.783 22.90 0.74 36.86 1.85
435 1994 0.665835 AGTGAACGATTTGCGCCAAA 59.334 45.000 4.18 6.18 46.04 3.28
478 2038 9.556030 GTAATTGACTTAGCAAGATTACAAACC 57.444 33.333 3.37 0.00 31.32 3.27
479 2039 7.759489 ATTGACTTAGCAAGATTACAAACCA 57.241 32.000 3.37 0.00 0.00 3.67
480 2040 7.575414 TTGACTTAGCAAGATTACAAACCAA 57.425 32.000 3.37 0.00 0.00 3.67
481 2041 7.759489 TGACTTAGCAAGATTACAAACCAAT 57.241 32.000 3.37 0.00 0.00 3.16
482 2042 7.816640 TGACTTAGCAAGATTACAAACCAATC 58.183 34.615 3.37 0.00 33.43 2.67
483 2043 7.665559 TGACTTAGCAAGATTACAAACCAATCT 59.334 33.333 3.37 0.00 43.06 2.40
484 2044 9.162764 GACTTAGCAAGATTACAAACCAATCTA 57.837 33.333 3.37 0.00 40.92 1.98
485 2045 9.686683 ACTTAGCAAGATTACAAACCAATCTAT 57.313 29.630 3.37 0.00 40.92 1.98
486 2046 9.941664 CTTAGCAAGATTACAAACCAATCTATG 57.058 33.333 0.00 2.08 40.92 2.23
487 2047 9.679661 TTAGCAAGATTACAAACCAATCTATGA 57.320 29.630 0.00 0.00 40.92 2.15
488 2048 8.757982 AGCAAGATTACAAACCAATCTATGAT 57.242 30.769 0.00 0.00 40.92 2.45
489 2049 9.193806 AGCAAGATTACAAACCAATCTATGATT 57.806 29.630 0.00 0.00 40.92 2.57
490 2050 9.241317 GCAAGATTACAAACCAATCTATGATTG 57.759 33.333 11.95 11.95 40.92 2.67
502 2062 7.918536 CAATCTATGATTGGATGGTTAGAGG 57.081 40.000 11.27 0.00 0.00 3.69
503 2063 6.633325 ATCTATGATTGGATGGTTAGAGGG 57.367 41.667 0.00 0.00 0.00 4.30
504 2064 5.726560 TCTATGATTGGATGGTTAGAGGGA 58.273 41.667 0.00 0.00 0.00 4.20
505 2065 4.713792 ATGATTGGATGGTTAGAGGGAC 57.286 45.455 0.00 0.00 0.00 4.46
506 2066 2.434336 TGATTGGATGGTTAGAGGGACG 59.566 50.000 0.00 0.00 0.00 4.79
507 2067 1.200519 TTGGATGGTTAGAGGGACGG 58.799 55.000 0.00 0.00 0.00 4.79
508 2068 0.042131 TGGATGGTTAGAGGGACGGT 59.958 55.000 0.00 0.00 0.00 4.83
509 2069 0.464452 GGATGGTTAGAGGGACGGTG 59.536 60.000 0.00 0.00 0.00 4.94
510 2070 0.464452 GATGGTTAGAGGGACGGTGG 59.536 60.000 0.00 0.00 0.00 4.61
511 2071 0.252558 ATGGTTAGAGGGACGGTGGT 60.253 55.000 0.00 0.00 0.00 4.16
512 2072 0.409092 TGGTTAGAGGGACGGTGGTA 59.591 55.000 0.00 0.00 0.00 3.25
513 2073 1.007479 TGGTTAGAGGGACGGTGGTAT 59.993 52.381 0.00 0.00 0.00 2.73
514 2074 1.685517 GGTTAGAGGGACGGTGGTATC 59.314 57.143 0.00 0.00 0.00 2.24
515 2075 1.685517 GTTAGAGGGACGGTGGTATCC 59.314 57.143 0.00 0.00 0.00 2.59
519 2079 3.227250 GGACGGTGGTATCCCCAG 58.773 66.667 0.00 0.00 46.45 4.45
524 2084 2.595655 GTGGTATCCCCAGCCCAC 59.404 66.667 0.00 0.00 46.45 4.61
525 2085 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
526 2086 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
527 2087 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
528 2088 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
544 2104 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
545 2105 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
546 2106 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
547 2107 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
548 2108 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
549 2109 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
550 2110 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
551 2111 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
552 2112 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
553 2113 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
554 2114 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
555 2115 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
556 2116 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
557 2117 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
558 2118 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
559 2119 2.938451 CTGGTGCTCGCATTATTTCTGA 59.062 45.455 0.00 0.00 0.00 3.27
560 2120 3.342719 TGGTGCTCGCATTATTTCTGAA 58.657 40.909 0.00 0.00 0.00 3.02
561 2121 3.947196 TGGTGCTCGCATTATTTCTGAAT 59.053 39.130 0.00 0.00 0.00 2.57
562 2122 4.398988 TGGTGCTCGCATTATTTCTGAATT 59.601 37.500 0.00 0.00 0.00 2.17
563 2123 5.105797 TGGTGCTCGCATTATTTCTGAATTT 60.106 36.000 0.00 0.00 0.00 1.82
564 2124 6.094742 TGGTGCTCGCATTATTTCTGAATTTA 59.905 34.615 0.00 0.00 0.00 1.40
565 2125 7.141363 GGTGCTCGCATTATTTCTGAATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
566 2126 7.649306 GGTGCTCGCATTATTTCTGAATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
567 2127 9.023967 GTGCTCGCATTATTTCTGAATTTATTT 57.976 29.630 0.00 0.00 0.00 1.40
568 2128 9.236691 TGCTCGCATTATTTCTGAATTTATTTC 57.763 29.630 0.00 0.00 34.72 2.17
569 2129 9.236691 GCTCGCATTATTTCTGAATTTATTTCA 57.763 29.630 0.00 0.00 42.09 2.69
580 2140 5.901552 TGAATTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 39.44 6.13
581 2141 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
582 2142 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
583 2143 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
584 2144 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
585 2145 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
586 2146 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
597 2157 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
598 2158 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
599 2159 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
600 2160 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
601 2161 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
602 2162 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
603 2163 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
604 2164 0.539051 CGCTTTCAGTGGGAGGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
605 2165 1.741732 CGCTTTCAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
606 2166 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
607 2167 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
608 2168 3.604582 CTTTCAGTGGGAGGAGATGTTC 58.395 50.000 0.00 0.00 0.00 3.18
616 2176 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
617 2177 1.226603 GGAGATGTTCCCGTCGACG 60.227 63.158 30.33 30.33 40.37 5.12
618 2178 1.651240 GGAGATGTTCCCGTCGACGA 61.651 60.000 37.65 18.99 40.37 4.20
619 2179 0.522915 GAGATGTTCCCGTCGACGAC 60.523 60.000 37.65 27.09 43.02 4.34
629 2189 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
630 2190 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
631 2191 2.683859 CGACGACGAGGTGCCTACA 61.684 63.158 0.00 0.00 42.66 2.74
632 2192 1.136984 GACGACGAGGTGCCTACAG 59.863 63.158 0.00 0.00 0.00 2.74
633 2193 1.584380 GACGACGAGGTGCCTACAGT 61.584 60.000 0.00 0.00 0.00 3.55
634 2194 1.154016 CGACGAGGTGCCTACAGTG 60.154 63.158 0.00 0.00 0.00 3.66
635 2195 1.583495 CGACGAGGTGCCTACAGTGA 61.583 60.000 0.00 0.00 0.00 3.41
636 2196 0.109226 GACGAGGTGCCTACAGTGAC 60.109 60.000 0.00 0.00 0.00 3.67
637 2197 0.539901 ACGAGGTGCCTACAGTGACT 60.540 55.000 0.00 0.00 0.00 3.41
638 2198 0.603569 CGAGGTGCCTACAGTGACTT 59.396 55.000 0.00 0.00 0.00 3.01
639 2199 1.402984 CGAGGTGCCTACAGTGACTTC 60.403 57.143 0.00 0.00 0.00 3.01
640 2200 0.603569 AGGTGCCTACAGTGACTTCG 59.396 55.000 0.00 0.00 0.00 3.79
641 2201 0.317479 GGTGCCTACAGTGACTTCGT 59.683 55.000 0.00 0.00 0.00 3.85
642 2202 1.542915 GGTGCCTACAGTGACTTCGTA 59.457 52.381 0.00 0.00 0.00 3.43
643 2203 2.165845 GGTGCCTACAGTGACTTCGTAT 59.834 50.000 0.00 0.00 0.00 3.06
644 2204 3.379372 GGTGCCTACAGTGACTTCGTATA 59.621 47.826 0.00 0.00 0.00 1.47
645 2205 4.142315 GGTGCCTACAGTGACTTCGTATAA 60.142 45.833 0.00 0.00 0.00 0.98
646 2206 5.404946 GTGCCTACAGTGACTTCGTATAAA 58.595 41.667 0.00 0.00 0.00 1.40
647 2207 6.040878 GTGCCTACAGTGACTTCGTATAAAT 58.959 40.000 0.00 0.00 0.00 1.40
648 2208 6.198591 GTGCCTACAGTGACTTCGTATAAATC 59.801 42.308 0.00 0.00 0.00 2.17
649 2209 6.096423 TGCCTACAGTGACTTCGTATAAATCT 59.904 38.462 0.00 0.00 0.00 2.40
650 2210 6.637658 GCCTACAGTGACTTCGTATAAATCTC 59.362 42.308 0.00 0.00 0.00 2.75
651 2211 7.681304 GCCTACAGTGACTTCGTATAAATCTCA 60.681 40.741 0.00 0.00 0.00 3.27
652 2212 8.188799 CCTACAGTGACTTCGTATAAATCTCAA 58.811 37.037 0.00 0.00 0.00 3.02
653 2213 9.227490 CTACAGTGACTTCGTATAAATCTCAAG 57.773 37.037 0.00 0.00 0.00 3.02
654 2214 7.827701 ACAGTGACTTCGTATAAATCTCAAGA 58.172 34.615 0.00 0.00 0.00 3.02
655 2215 8.470805 ACAGTGACTTCGTATAAATCTCAAGAT 58.529 33.333 0.00 0.00 36.07 2.40
656 2216 8.750416 CAGTGACTTCGTATAAATCTCAAGATG 58.250 37.037 0.00 0.00 34.49 2.90
657 2217 8.687242 AGTGACTTCGTATAAATCTCAAGATGA 58.313 33.333 0.00 0.00 34.49 2.92
658 2218 9.469807 GTGACTTCGTATAAATCTCAAGATGAT 57.530 33.333 0.00 0.00 34.49 2.45
663 2223 8.932945 TCGTATAAATCTCAAGATGATATGCC 57.067 34.615 0.00 0.00 34.49 4.40
664 2224 7.702348 TCGTATAAATCTCAAGATGATATGCCG 59.298 37.037 0.00 4.39 34.49 5.69
665 2225 7.043125 CGTATAAATCTCAAGATGATATGCCGG 60.043 40.741 0.00 0.00 34.49 6.13
666 2226 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
667 2227 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
668 2228 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
669 2229 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
670 2230 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
671 2231 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
672 2232 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
673 2233 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
674 2234 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
675 2235 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
676 2236 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
677 2237 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
678 2238 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
679 2239 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
680 2240 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
681 2241 1.027255 CCGGCTCAGTCTCTCGAAGA 61.027 60.000 0.00 0.00 0.00 2.87
682 2242 1.021202 CGGCTCAGTCTCTCGAAGAT 58.979 55.000 0.00 0.00 36.11 2.40
683 2243 1.268488 CGGCTCAGTCTCTCGAAGATG 60.268 57.143 0.00 0.00 36.11 2.90
684 2244 1.535860 GGCTCAGTCTCTCGAAGATGC 60.536 57.143 0.00 0.00 36.11 3.91
685 2245 1.405105 GCTCAGTCTCTCGAAGATGCT 59.595 52.381 0.00 0.00 36.11 3.79
686 2246 2.541588 GCTCAGTCTCTCGAAGATGCTC 60.542 54.545 0.00 0.00 36.11 4.26
687 2247 2.682352 CTCAGTCTCTCGAAGATGCTCA 59.318 50.000 0.00 0.00 36.11 4.26
688 2248 3.286353 TCAGTCTCTCGAAGATGCTCAT 58.714 45.455 0.00 0.00 36.11 2.90
689 2249 4.455606 TCAGTCTCTCGAAGATGCTCATA 58.544 43.478 0.00 0.00 36.11 2.15
690 2250 4.884164 TCAGTCTCTCGAAGATGCTCATAA 59.116 41.667 0.00 0.00 36.11 1.90
691 2251 5.008514 TCAGTCTCTCGAAGATGCTCATAAG 59.991 44.000 0.00 0.00 36.11 1.73
692 2252 4.278170 AGTCTCTCGAAGATGCTCATAAGG 59.722 45.833 0.00 0.00 36.11 2.69
693 2253 3.571828 TCTCTCGAAGATGCTCATAAGGG 59.428 47.826 0.00 0.00 33.89 3.95
694 2254 3.300388 TCTCGAAGATGCTCATAAGGGT 58.700 45.455 0.00 0.00 33.89 4.34
695 2255 4.470602 TCTCGAAGATGCTCATAAGGGTA 58.529 43.478 0.00 0.00 33.89 3.69
696 2256 4.520874 TCTCGAAGATGCTCATAAGGGTAG 59.479 45.833 0.00 0.00 33.89 3.18
697 2257 4.470602 TCGAAGATGCTCATAAGGGTAGA 58.529 43.478 0.00 0.00 0.00 2.59
698 2258 4.893524 TCGAAGATGCTCATAAGGGTAGAA 59.106 41.667 0.00 0.00 0.00 2.10
699 2259 5.540337 TCGAAGATGCTCATAAGGGTAGAAT 59.460 40.000 0.00 0.00 0.00 2.40
700 2260 5.636965 CGAAGATGCTCATAAGGGTAGAATG 59.363 44.000 0.00 0.00 0.00 2.67
701 2261 6.506538 AAGATGCTCATAAGGGTAGAATGT 57.493 37.500 0.00 0.00 0.00 2.71
702 2262 5.862845 AGATGCTCATAAGGGTAGAATGTG 58.137 41.667 0.00 0.00 0.00 3.21
703 2263 3.808728 TGCTCATAAGGGTAGAATGTGC 58.191 45.455 0.00 0.00 39.41 4.57
704 2264 2.802816 GCTCATAAGGGTAGAATGTGCG 59.197 50.000 0.00 0.00 32.50 5.34
705 2265 3.741388 GCTCATAAGGGTAGAATGTGCGT 60.741 47.826 0.00 0.00 32.50 5.24
706 2266 3.792401 TCATAAGGGTAGAATGTGCGTG 58.208 45.455 0.00 0.00 0.00 5.34
707 2267 3.196901 TCATAAGGGTAGAATGTGCGTGT 59.803 43.478 0.00 0.00 0.00 4.49
708 2268 1.808411 AAGGGTAGAATGTGCGTGTG 58.192 50.000 0.00 0.00 0.00 3.82
709 2269 0.685097 AGGGTAGAATGTGCGTGTGT 59.315 50.000 0.00 0.00 0.00 3.72
710 2270 0.796312 GGGTAGAATGTGCGTGTGTG 59.204 55.000 0.00 0.00 0.00 3.82
711 2271 0.165944 GGTAGAATGTGCGTGTGTGC 59.834 55.000 0.00 0.00 0.00 4.57
712 2272 0.179250 GTAGAATGTGCGTGTGTGCG 60.179 55.000 0.00 0.00 37.81 5.34
713 2273 0.598942 TAGAATGTGCGTGTGTGCGT 60.599 50.000 0.00 0.00 37.81 5.24
714 2274 1.010125 GAATGTGCGTGTGTGCGTT 60.010 52.632 0.00 0.00 37.81 4.84
715 2275 0.991770 GAATGTGCGTGTGTGCGTTC 60.992 55.000 0.00 0.00 37.81 3.95
716 2276 1.710103 AATGTGCGTGTGTGCGTTCA 61.710 50.000 0.00 0.00 37.81 3.18
717 2277 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
718 2278 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
719 2279 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
720 2280 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
721 2281 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
722 2282 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
723 2283 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
724 2284 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
725 2285 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
726 2286 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
727 2287 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
728 2288 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
729 2289 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
730 2290 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
731 2291 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
732 2292 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
733 2293 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
734 2294 2.758130 TCATAGGGGTGAGTGTATGCA 58.242 47.619 0.00 0.00 0.00 3.96
735 2295 2.434336 TCATAGGGGTGAGTGTATGCAC 59.566 50.000 5.71 5.71 45.57 4.57
747 2307 4.631133 GTGTATGCACGTATGTATGAGC 57.369 45.455 0.00 0.00 35.75 4.26
748 2308 3.119628 GTGTATGCACGTATGTATGAGCG 59.880 47.826 0.00 0.00 35.75 5.03
749 2309 1.139989 ATGCACGTATGTATGAGCGC 58.860 50.000 0.00 0.00 32.51 5.92
750 2310 0.102300 TGCACGTATGTATGAGCGCT 59.898 50.000 11.27 11.27 32.51 5.92
751 2311 1.209128 GCACGTATGTATGAGCGCTT 58.791 50.000 13.26 0.00 0.00 4.68
752 2312 1.071239 GCACGTATGTATGAGCGCTTG 60.071 52.381 13.26 2.09 0.00 4.01
753 2313 2.193447 CACGTATGTATGAGCGCTTGT 58.807 47.619 13.26 5.98 0.00 3.16
754 2314 2.034591 CACGTATGTATGAGCGCTTGTG 60.035 50.000 13.26 5.89 0.00 3.33
755 2315 2.193447 CGTATGTATGAGCGCTTGTGT 58.807 47.619 13.26 0.12 0.00 3.72
756 2316 2.216488 CGTATGTATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
757 2317 2.680312 ATGTATGAGCGCTTGTGTCT 57.320 45.000 13.26 0.00 0.00 3.41
758 2318 1.713597 TGTATGAGCGCTTGTGTCTG 58.286 50.000 13.26 0.00 0.00 3.51
759 2319 1.000843 TGTATGAGCGCTTGTGTCTGT 59.999 47.619 13.26 0.00 0.00 3.41
760 2320 2.230266 TGTATGAGCGCTTGTGTCTGTA 59.770 45.455 13.26 0.00 0.00 2.74
761 2321 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
762 2322 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
763 2323 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
764 2324 0.389391 AGCGCTTGTGTCTGTACTGT 59.611 50.000 2.64 0.00 0.00 3.55
765 2325 0.508641 GCGCTTGTGTCTGTACTGTG 59.491 55.000 0.00 0.00 0.00 3.66
766 2326 1.852942 CGCTTGTGTCTGTACTGTGT 58.147 50.000 0.00 0.00 0.00 3.72
767 2327 2.201732 CGCTTGTGTCTGTACTGTGTT 58.798 47.619 0.00 0.00 0.00 3.32
768 2328 3.377439 CGCTTGTGTCTGTACTGTGTTA 58.623 45.455 0.00 0.00 0.00 2.41
769 2329 3.799963 CGCTTGTGTCTGTACTGTGTTAA 59.200 43.478 0.00 0.00 0.00 2.01
770 2330 4.269123 CGCTTGTGTCTGTACTGTGTTAAA 59.731 41.667 0.00 0.00 0.00 1.52
771 2331 5.220510 CGCTTGTGTCTGTACTGTGTTAAAA 60.221 40.000 0.00 0.00 0.00 1.52
772 2332 6.548171 GCTTGTGTCTGTACTGTGTTAAAAA 58.452 36.000 0.00 0.00 0.00 1.94
798 2358 2.610438 AGATTGGGCATCTTTGTGGT 57.390 45.000 0.00 0.00 39.47 4.16
801 2361 1.786937 TTGGGCATCTTTGTGGTGTT 58.213 45.000 0.00 0.00 0.00 3.32
831 2400 3.663176 CCAGCACGCACCACTTGG 61.663 66.667 0.00 0.00 42.17 3.61
832 2401 2.591429 CAGCACGCACCACTTGGA 60.591 61.111 1.14 0.00 38.94 3.53
833 2402 1.968017 CAGCACGCACCACTTGGAT 60.968 57.895 1.14 0.00 38.94 3.41
834 2403 1.968017 AGCACGCACCACTTGGATG 60.968 57.895 1.14 0.00 38.94 3.51
836 2405 2.034066 ACGCACCACTTGGATGGG 59.966 61.111 1.14 7.65 44.81 4.00
838 2407 2.036256 GCACCACTTGGATGGGCT 59.964 61.111 1.14 0.00 44.81 5.19
839 2408 1.607467 GCACCACTTGGATGGGCTT 60.607 57.895 1.14 0.00 44.81 4.35
840 2409 1.880819 GCACCACTTGGATGGGCTTG 61.881 60.000 1.14 0.00 44.81 4.01
841 2410 1.077265 ACCACTTGGATGGGCTTGG 59.923 57.895 1.14 0.00 44.81 3.61
913 2873 0.107165 GGAAGGTCAGCCCATACACC 60.107 60.000 0.00 0.00 34.66 4.16
950 2920 2.906389 ACACCACAAAGCTATCTCCAGA 59.094 45.455 0.00 0.00 0.00 3.86
954 2924 3.431486 CCACAAAGCTATCTCCAGACTCC 60.431 52.174 0.00 0.00 0.00 3.85
955 2925 3.196469 CACAAAGCTATCTCCAGACTCCA 59.804 47.826 0.00 0.00 0.00 3.86
956 2926 3.450457 ACAAAGCTATCTCCAGACTCCAG 59.550 47.826 0.00 0.00 0.00 3.86
957 2927 3.678965 AAGCTATCTCCAGACTCCAGA 57.321 47.619 0.00 0.00 0.00 3.86
961 2931 2.452600 ATCTCCAGACTCCAGACTCC 57.547 55.000 0.00 0.00 0.00 3.85
976 2946 0.617249 ACTCCAGAGCCCAGAGGAAG 60.617 60.000 0.00 0.00 33.47 3.46
981 2951 1.992277 GAGCCCAGAGGAAGCCAGA 60.992 63.158 0.00 0.00 33.47 3.86
1025 3007 4.168291 CGGAGGAGGCTTGGAGGC 62.168 72.222 0.00 0.00 41.73 4.70
1110 3092 1.545706 GCTTCACCTTCTCCTCCCGT 61.546 60.000 0.00 0.00 0.00 5.28
1186 3173 4.496341 CGCATTTCATCATACACCTTCACC 60.496 45.833 0.00 0.00 0.00 4.02
1190 3177 0.535335 ATCATACACCTTCACCGCGT 59.465 50.000 4.92 0.00 0.00 6.01
1211 3198 1.538047 GCTTCTTGGCTCACATCCAA 58.462 50.000 0.00 0.00 40.98 3.53
1219 3206 1.079503 GCTCACATCCAAACGAGGTC 58.920 55.000 0.00 0.00 31.77 3.85
1232 3219 1.301479 GAGGTCGTCGGTTTGGCTT 60.301 57.895 0.00 0.00 0.00 4.35
1234 3221 2.251371 GTCGTCGGTTTGGCTTGC 59.749 61.111 0.00 0.00 0.00 4.01
1247 3234 2.881266 GCTTGCGCTGACGTGTCAA 61.881 57.895 9.73 0.00 42.83 3.18
1249 3236 1.761244 CTTGCGCTGACGTGTCAACA 61.761 55.000 9.73 0.64 42.83 3.33
1257 3245 4.593157 GCTGACGTGTCAACAATGTTTTA 58.407 39.130 4.03 0.00 39.39 1.52
1358 3355 1.335324 GCGAGTGAGTTTTGCATTGCT 60.335 47.619 10.49 0.00 0.00 3.91
1410 3417 2.099592 TGCTGACTTGTTTCTTGGCTTG 59.900 45.455 0.00 0.00 0.00 4.01
1413 3420 2.687935 TGACTTGTTTCTTGGCTTGGTC 59.312 45.455 0.00 0.00 0.00 4.02
1506 3516 5.188751 AGAAGAAGGATTGGAGACAGTAAGG 59.811 44.000 0.00 0.00 44.54 2.69
1507 3517 3.198853 AGAAGGATTGGAGACAGTAAGGC 59.801 47.826 0.00 0.00 44.54 4.35
1519 3531 2.668212 TAAGGCGCGCTTGTTGCT 60.668 55.556 32.29 15.67 40.11 3.91
1593 3612 4.359706 GAAGAAGAAGAAGCGAGGATCTC 58.640 47.826 0.00 0.00 0.00 2.75
1657 3681 1.831652 CGGGCTTCAGGTTGGAGAGT 61.832 60.000 0.00 0.00 0.00 3.24
1661 3685 2.959030 GGCTTCAGGTTGGAGAGTTTTT 59.041 45.455 0.00 0.00 0.00 1.94
1673 3697 3.374367 GGAGAGTTTTTAGTGCCGGATTC 59.626 47.826 5.05 0.00 0.00 2.52
1694 3724 3.757493 TCCCTAGTGTCTTCTCGTCTTTC 59.243 47.826 0.00 0.00 0.00 2.62
1713 3743 5.186992 TCTTTCCTTTCGTCTGTGATCCATA 59.813 40.000 0.00 0.00 0.00 2.74
1756 3787 3.737172 CAGGTTTGGAAGGCGGCG 61.737 66.667 0.51 0.51 0.00 6.46
1867 3899 4.497006 GGTGATGGCTCGATCTGAAATTTG 60.497 45.833 0.00 0.00 0.00 2.32
1874 3906 5.296780 GGCTCGATCTGAAATTTGGTTGATA 59.703 40.000 0.00 0.00 0.00 2.15
1875 3907 6.195165 GCTCGATCTGAAATTTGGTTGATAC 58.805 40.000 0.00 0.00 0.00 2.24
1899 3931 3.575687 CAGAATCCTTCCACCTTTGCTTT 59.424 43.478 0.00 0.00 0.00 3.51
1902 3934 6.603201 CAGAATCCTTCCACCTTTGCTTTATA 59.397 38.462 0.00 0.00 0.00 0.98
1906 3938 5.588648 TCCTTCCACCTTTGCTTTATATTCG 59.411 40.000 0.00 0.00 0.00 3.34
1976 4022 8.275015 TGAACACCAACGATATTCATGTAATT 57.725 30.769 0.00 0.00 0.00 1.40
2154 4446 5.824624 ACATGATACTTAAATGCACCCTGAG 59.175 40.000 0.00 0.00 0.00 3.35
2174 4466 6.037610 CCTGAGAAAGTAATACATGGAGCAAC 59.962 42.308 0.00 0.00 0.00 4.17
2201 4493 6.140303 AGTTTCTTATGCCATGTTGCTATG 57.860 37.500 0.00 0.00 0.00 2.23
2350 4642 1.064825 ACGGGAACTGGACTGGAAAT 58.935 50.000 0.00 0.00 40.47 2.17
2431 4724 2.028839 CCAATTGCAGCCTGATTGTTCA 60.029 45.455 0.00 0.00 0.00 3.18
2454 4747 6.430925 TCAATTGTTTACCATGGACTTCTGAG 59.569 38.462 21.47 1.16 0.00 3.35
2457 4750 5.690865 TGTTTACCATGGACTTCTGAGTTT 58.309 37.500 21.47 0.00 35.88 2.66
2477 4941 2.785713 TTTTTGGCACCGAGCTTAAC 57.214 45.000 0.00 0.00 44.79 2.01
2478 4942 0.955905 TTTTGGCACCGAGCTTAACC 59.044 50.000 0.00 0.00 44.79 2.85
2628 5092 2.238144 ACAGTGAGGCAGCTTATGTCAT 59.762 45.455 0.00 0.00 35.29 3.06
2629 5093 2.871022 CAGTGAGGCAGCTTATGTCATC 59.129 50.000 0.00 0.00 35.29 2.92
2651 5117 3.355378 TGGTGCCAAGAAGGTATCATTG 58.645 45.455 0.00 0.00 38.29 2.82
2666 5132 7.394016 AGGTATCATTGTATTCACTGACAACA 58.606 34.615 0.00 0.00 38.33 3.33
2667 5133 8.049117 AGGTATCATTGTATTCACTGACAACAT 58.951 33.333 0.00 0.00 38.33 2.71
2679 5145 8.620116 TTCACTGACAACATTTATCTGATCAA 57.380 30.769 0.00 0.00 0.00 2.57
2693 5159 9.685276 TTTATCTGATCAAAGAAATCCAGCTAA 57.315 29.630 0.00 0.00 0.00 3.09
2694 5160 6.992063 TCTGATCAAAGAAATCCAGCTAAC 57.008 37.500 0.00 0.00 0.00 2.34
2702 5168 6.934048 AAGAAATCCAGCTAACTAAGATGC 57.066 37.500 0.00 0.00 40.42 3.91
2710 5176 5.163468 CCAGCTAACTAAGATGCTTGAGAGA 60.163 44.000 0.00 0.00 40.42 3.10
2715 5181 7.710475 GCTAACTAAGATGCTTGAGAGAAAGAT 59.290 37.037 0.00 0.00 0.00 2.40
2737 5203 4.564782 TCAGATTCTCCTTTGCATCTGT 57.435 40.909 8.97 0.00 42.24 3.41
2744 5210 3.582647 TCTCCTTTGCATCTGTTAGGTGA 59.417 43.478 0.00 0.00 0.00 4.02
2841 5307 1.605712 CCGAAGCTTCTTCACGGTTCT 60.606 52.381 23.50 0.00 38.97 3.01
3006 5472 1.342819 GGAGCAGATAGACCTTGCGAT 59.657 52.381 0.00 0.00 0.00 4.58
3096 5562 5.125417 GGCCAGACTAAAAATAGCATTGTCA 59.875 40.000 0.00 0.00 0.00 3.58
3145 5611 4.083110 ACTGTTTATGTTCATGCTGTCTGC 60.083 41.667 0.00 0.00 43.25 4.26
3216 5682 7.502561 GGATAATAACCAGCTTATGACCAAAGT 59.497 37.037 0.00 0.00 0.00 2.66
3260 5728 2.161211 GCAAGGTCTGAAGATTGTCTGC 59.839 50.000 0.00 0.00 0.00 4.26
3281 5749 5.677567 TGCTTTGCTCTGATCATGAATCTA 58.322 37.500 0.00 0.00 35.24 1.98
3284 5752 6.128227 GCTTTGCTCTGATCATGAATCTATCC 60.128 42.308 0.00 0.00 35.24 2.59
3298 5766 7.798596 TGAATCTATCCAGCATCTTTTCTTC 57.201 36.000 0.00 0.00 0.00 2.87
3538 6077 8.870160 CTGTCAAAAATTACAGTTGGATCAAA 57.130 30.769 0.00 0.00 38.62 2.69
3576 6115 2.418976 GACCGAGGTCCTGTAAAATTGC 59.581 50.000 11.07 0.00 39.08 3.56
3607 6146 6.128553 GCGACATCAAAGAGAAAACTACATCA 60.129 38.462 0.00 0.00 0.00 3.07
3612 6151 7.369803 TCAAAGAGAAAACTACATCATGCTC 57.630 36.000 0.00 0.00 0.00 4.26
3618 6157 6.182627 AGAAAACTACATCATGCTCCATTGA 58.817 36.000 0.00 0.00 0.00 2.57
3679 6218 4.081531 ACAACGTCTTTCGGGTATCCAATA 60.082 41.667 0.00 0.00 44.69 1.90
3782 6326 6.073222 GGAGTACACTGGCATAAATAAATCCG 60.073 42.308 0.00 0.00 0.00 4.18
3788 6332 3.880490 TGGCATAAATAAATCCGAAGCGT 59.120 39.130 0.00 0.00 0.00 5.07
3793 6337 6.573725 GCATAAATAAATCCGAAGCGTAACAG 59.426 38.462 0.00 0.00 0.00 3.16
3798 6342 1.241165 TCCGAAGCGTAACAGACAGA 58.759 50.000 0.00 0.00 0.00 3.41
3799 6343 1.816835 TCCGAAGCGTAACAGACAGAT 59.183 47.619 0.00 0.00 0.00 2.90
3821 6365 6.556495 AGATAGCTCCAGGAATGAATCTGTTA 59.444 38.462 0.00 0.00 0.00 2.41
3830 6374 5.059833 GGAATGAATCTGTTAGCCAGGTAG 58.940 45.833 0.00 0.00 41.83 3.18
3832 6376 2.771943 TGAATCTGTTAGCCAGGTAGGG 59.228 50.000 0.00 0.00 41.83 3.53
3893 6444 3.144506 CAGCAGGGTATGAATGTCCATC 58.855 50.000 0.00 0.00 0.00 3.51
3934 6492 4.114794 GCATCAACATGGGTAGCAAAATC 58.885 43.478 0.00 0.00 0.00 2.17
3983 6541 4.115199 ATGGCGCCAGTTCCCCTC 62.115 66.667 35.36 0.00 0.00 4.30
4035 6593 2.928334 ACAGATGGATTGAGTGGATGC 58.072 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.613260 AACGGGAATGAGTGCTAGCA 59.387 50.000 14.93 14.93 0.00 3.49
168 169 4.554036 GCCTCCGGCTCCCATCAC 62.554 72.222 0.00 0.00 46.69 3.06
275 1834 4.518970 GCTGTTAATCACTGGACCAAAGAA 59.481 41.667 0.00 0.00 0.00 2.52
279 1838 3.411446 CTGCTGTTAATCACTGGACCAA 58.589 45.455 0.00 0.00 0.00 3.67
290 1849 0.106015 GGATGGGGCCTGCTGTTAAT 60.106 55.000 0.84 0.00 0.00 1.40
291 1850 1.214305 AGGATGGGGCCTGCTGTTAA 61.214 55.000 0.84 0.00 36.76 2.01
293 1852 2.943265 AGGATGGGGCCTGCTGTT 60.943 61.111 0.84 0.00 36.76 3.16
308 1867 1.950909 GAGTCGGTGATGAGTAGGAGG 59.049 57.143 0.00 0.00 0.00 4.30
315 1874 0.668535 TATGCGGAGTCGGTGATGAG 59.331 55.000 0.00 0.00 36.79 2.90
319 1878 0.604073 TTTGTATGCGGAGTCGGTGA 59.396 50.000 0.00 0.00 36.79 4.02
364 1923 4.712476 AGTGGTGCAAAATTTTGGCATTA 58.288 34.783 27.60 16.56 38.57 1.90
389 1948 6.113411 GGTGCTAGAAGTTATGGTGTACATT 58.887 40.000 0.00 0.00 41.03 2.71
422 1981 1.583404 GCTACAATTTGGCGCAAATCG 59.417 47.619 10.83 5.75 42.32 3.34
435 1994 5.714333 TCAATTACATTGGTGGTGCTACAAT 59.286 36.000 0.00 0.00 40.61 2.71
472 2032 6.197168 ACCATCCAATCATAGATTGGTTTGT 58.803 36.000 28.38 21.58 46.47 2.83
473 2033 6.720112 ACCATCCAATCATAGATTGGTTTG 57.280 37.500 28.38 25.22 46.47 2.93
474 2034 8.281531 TCTAACCATCCAATCATAGATTGGTTT 58.718 33.333 28.38 20.92 46.47 3.27
475 2035 7.815383 TCTAACCATCCAATCATAGATTGGTT 58.185 34.615 28.38 21.33 46.47 3.67
476 2036 7.392766 TCTAACCATCCAATCATAGATTGGT 57.607 36.000 28.38 17.81 46.47 3.67
478 2038 6.883217 CCCTCTAACCATCCAATCATAGATTG 59.117 42.308 11.73 11.73 0.00 2.67
479 2039 6.794493 TCCCTCTAACCATCCAATCATAGATT 59.206 38.462 0.00 0.00 0.00 2.40
480 2040 6.214412 GTCCCTCTAACCATCCAATCATAGAT 59.786 42.308 0.00 0.00 0.00 1.98
481 2041 5.544176 GTCCCTCTAACCATCCAATCATAGA 59.456 44.000 0.00 0.00 0.00 1.98
482 2042 5.567623 CGTCCCTCTAACCATCCAATCATAG 60.568 48.000 0.00 0.00 0.00 2.23
483 2043 4.283467 CGTCCCTCTAACCATCCAATCATA 59.717 45.833 0.00 0.00 0.00 2.15
484 2044 3.071602 CGTCCCTCTAACCATCCAATCAT 59.928 47.826 0.00 0.00 0.00 2.45
485 2045 2.434336 CGTCCCTCTAACCATCCAATCA 59.566 50.000 0.00 0.00 0.00 2.57
486 2046 2.224305 CCGTCCCTCTAACCATCCAATC 60.224 54.545 0.00 0.00 0.00 2.67
487 2047 1.768870 CCGTCCCTCTAACCATCCAAT 59.231 52.381 0.00 0.00 0.00 3.16
488 2048 1.200519 CCGTCCCTCTAACCATCCAA 58.799 55.000 0.00 0.00 0.00 3.53
489 2049 0.042131 ACCGTCCCTCTAACCATCCA 59.958 55.000 0.00 0.00 0.00 3.41
490 2050 0.464452 CACCGTCCCTCTAACCATCC 59.536 60.000 0.00 0.00 0.00 3.51
491 2051 0.464452 CCACCGTCCCTCTAACCATC 59.536 60.000 0.00 0.00 0.00 3.51
492 2052 0.252558 ACCACCGTCCCTCTAACCAT 60.253 55.000 0.00 0.00 0.00 3.55
493 2053 0.409092 TACCACCGTCCCTCTAACCA 59.591 55.000 0.00 0.00 0.00 3.67
494 2054 1.685517 GATACCACCGTCCCTCTAACC 59.314 57.143 0.00 0.00 0.00 2.85
495 2055 1.685517 GGATACCACCGTCCCTCTAAC 59.314 57.143 0.00 0.00 0.00 2.34
496 2056 2.077687 GGATACCACCGTCCCTCTAA 57.922 55.000 0.00 0.00 0.00 2.10
497 2057 3.835810 GGATACCACCGTCCCTCTA 57.164 57.895 0.00 0.00 0.00 2.43
498 2058 4.701286 GGATACCACCGTCCCTCT 57.299 61.111 0.00 0.00 0.00 3.69
510 2070 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
511 2071 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
521 2081 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
526 2086 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
527 2087 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
528 2088 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
529 2089 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
530 2090 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
531 2091 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
532 2092 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
533 2093 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
534 2094 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
535 2095 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
536 2096 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
537 2097 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
538 2098 2.938451 TCAGAAATAATGCGAGCACCAG 59.062 45.455 0.00 0.00 0.00 4.00
539 2099 2.984562 TCAGAAATAATGCGAGCACCA 58.015 42.857 0.00 0.00 0.00 4.17
540 2100 4.558538 ATTCAGAAATAATGCGAGCACC 57.441 40.909 0.00 0.00 0.00 5.01
541 2101 8.566008 AATAAATTCAGAAATAATGCGAGCAC 57.434 30.769 0.00 0.00 0.00 4.40
542 2102 9.236691 GAAATAAATTCAGAAATAATGCGAGCA 57.763 29.630 0.00 0.00 37.99 4.26
543 2103 9.236691 TGAAATAAATTCAGAAATAATGCGAGC 57.763 29.630 0.00 0.00 43.08 5.03
557 2117 5.449862 CGCCGGAAATCCTGAAATAAATTCA 60.450 40.000 5.05 0.00 45.71 2.57
558 2118 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
559 2119 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
560 2120 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
561 2121 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
562 2122 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
563 2123 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
564 2124 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
565 2125 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
566 2126 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
567 2127 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
568 2128 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
569 2129 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
580 2140 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
581 2141 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
582 2142 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
583 2143 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
584 2144 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
585 2145 0.539051 ATCTCCTCCCACTGAAAGCG 59.461 55.000 0.00 0.00 37.60 4.68
586 2146 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
587 2147 3.604582 GAACATCTCCTCCCACTGAAAG 58.395 50.000 0.00 0.00 42.29 2.62
588 2148 2.305927 GGAACATCTCCTCCCACTGAAA 59.694 50.000 0.00 0.00 41.61 2.69
589 2149 1.909302 GGAACATCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
590 2150 1.573108 GGAACATCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
595 2155 1.823976 GACGGGAACATCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
596 2156 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
597 2157 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
598 2158 1.654954 CGTCGACGGGAACATCTCCT 61.655 60.000 29.70 0.00 44.68 3.69
599 2159 1.226603 CGTCGACGGGAACATCTCC 60.227 63.158 29.70 0.00 44.54 3.71
600 2160 0.522915 GTCGTCGACGGGAACATCTC 60.523 60.000 35.05 12.17 40.29 2.75
601 2161 1.505353 GTCGTCGACGGGAACATCT 59.495 57.895 35.05 0.00 40.29 2.90
602 2162 4.068302 GTCGTCGACGGGAACATC 57.932 61.111 35.05 14.32 40.29 3.06
611 2171 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
612 2172 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
613 2173 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
614 2174 1.136984 CTGTAGGCACCTCGTCGTC 59.863 63.158 0.00 0.00 0.00 4.20
615 2175 1.602888 ACTGTAGGCACCTCGTCGT 60.603 57.895 0.00 0.00 0.00 4.34
616 2176 1.154016 CACTGTAGGCACCTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
617 2177 0.109226 GTCACTGTAGGCACCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
618 2178 0.539901 AGTCACTGTAGGCACCTCGT 60.540 55.000 0.00 0.00 0.00 4.18
619 2179 0.603569 AAGTCACTGTAGGCACCTCG 59.396 55.000 0.00 0.00 0.00 4.63
620 2180 1.402984 CGAAGTCACTGTAGGCACCTC 60.403 57.143 0.00 0.00 0.00 3.85
621 2181 0.603569 CGAAGTCACTGTAGGCACCT 59.396 55.000 0.00 0.00 0.00 4.00
622 2182 0.317479 ACGAAGTCACTGTAGGCACC 59.683 55.000 0.00 0.00 29.74 5.01
623 2183 3.505464 ATACGAAGTCACTGTAGGCAC 57.495 47.619 0.00 0.00 43.93 5.01
624 2184 5.648178 TTTATACGAAGTCACTGTAGGCA 57.352 39.130 0.00 0.00 43.93 4.75
625 2185 6.505272 AGATTTATACGAAGTCACTGTAGGC 58.495 40.000 0.00 0.00 43.93 3.93
626 2186 7.704271 TGAGATTTATACGAAGTCACTGTAGG 58.296 38.462 0.00 0.00 43.93 3.18
627 2187 9.227490 CTTGAGATTTATACGAAGTCACTGTAG 57.773 37.037 0.00 0.00 43.93 2.74
628 2188 8.953313 TCTTGAGATTTATACGAAGTCACTGTA 58.047 33.333 0.00 0.00 43.93 2.74
629 2189 7.827701 TCTTGAGATTTATACGAAGTCACTGT 58.172 34.615 0.00 0.00 43.93 3.55
630 2190 8.750416 CATCTTGAGATTTATACGAAGTCACTG 58.250 37.037 0.00 0.00 35.39 3.66
631 2191 8.687242 TCATCTTGAGATTTATACGAAGTCACT 58.313 33.333 0.00 0.00 35.39 3.41
632 2192 8.858003 TCATCTTGAGATTTATACGAAGTCAC 57.142 34.615 0.00 0.00 35.39 3.67
637 2197 9.371136 GGCATATCATCTTGAGATTTATACGAA 57.629 33.333 0.00 0.00 31.21 3.85
638 2198 7.702348 CGGCATATCATCTTGAGATTTATACGA 59.298 37.037 0.00 0.00 31.21 3.43
639 2199 7.043125 CCGGCATATCATCTTGAGATTTATACG 60.043 40.741 0.00 0.00 31.21 3.06
640 2200 7.254590 GCCGGCATATCATCTTGAGATTTATAC 60.255 40.741 24.80 0.00 31.21 1.47
641 2201 6.763135 GCCGGCATATCATCTTGAGATTTATA 59.237 38.462 24.80 0.00 31.21 0.98
642 2202 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
643 2203 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
644 2204 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
645 2205 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
646 2206 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
647 2207 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
648 2208 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
649 2209 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
650 2210 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
651 2211 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
652 2212 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
653 2213 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
654 2214 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
655 2215 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
656 2216 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
657 2217 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
658 2218 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
659 2219 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
660 2220 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
661 2221 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
662 2222 1.027255 TCTTCGAGAGACTGAGCCGG 61.027 60.000 0.00 0.00 41.84 6.13
663 2223 1.021202 ATCTTCGAGAGACTGAGCCG 58.979 55.000 0.35 0.00 41.84 5.52
664 2224 1.535860 GCATCTTCGAGAGACTGAGCC 60.536 57.143 0.35 0.00 41.84 4.70
665 2225 1.405105 AGCATCTTCGAGAGACTGAGC 59.595 52.381 0.35 0.00 41.84 4.26
666 2226 2.682352 TGAGCATCTTCGAGAGACTGAG 59.318 50.000 0.35 0.00 41.84 3.35
667 2227 2.716217 TGAGCATCTTCGAGAGACTGA 58.284 47.619 0.35 0.00 41.84 3.41
668 2228 3.713858 ATGAGCATCTTCGAGAGACTG 57.286 47.619 0.35 2.81 41.84 3.51
669 2229 4.278170 CCTTATGAGCATCTTCGAGAGACT 59.722 45.833 0.35 0.00 41.84 3.24
670 2230 4.545610 CCTTATGAGCATCTTCGAGAGAC 58.454 47.826 0.35 0.00 41.84 3.36
671 2231 3.571828 CCCTTATGAGCATCTTCGAGAGA 59.428 47.826 0.79 0.79 39.13 3.10
672 2232 3.320541 ACCCTTATGAGCATCTTCGAGAG 59.679 47.826 0.00 0.00 34.92 3.20
673 2233 3.300388 ACCCTTATGAGCATCTTCGAGA 58.700 45.455 0.00 0.00 34.92 4.04
674 2234 3.742433 ACCCTTATGAGCATCTTCGAG 57.258 47.619 0.00 0.00 34.92 4.04
675 2235 4.470602 TCTACCCTTATGAGCATCTTCGA 58.529 43.478 0.00 0.00 34.92 3.71
676 2236 4.855715 TCTACCCTTATGAGCATCTTCG 57.144 45.455 0.00 0.00 34.92 3.79
677 2237 6.426328 CACATTCTACCCTTATGAGCATCTTC 59.574 42.308 0.00 0.00 34.92 2.87
678 2238 6.294473 CACATTCTACCCTTATGAGCATCTT 58.706 40.000 0.00 0.00 34.92 2.40
679 2239 5.744300 GCACATTCTACCCTTATGAGCATCT 60.744 44.000 0.00 0.00 36.37 2.90
680 2240 4.453819 GCACATTCTACCCTTATGAGCATC 59.546 45.833 0.00 0.00 36.37 3.91
681 2241 4.392940 GCACATTCTACCCTTATGAGCAT 58.607 43.478 0.00 0.00 36.37 3.79
682 2242 3.741075 CGCACATTCTACCCTTATGAGCA 60.741 47.826 0.00 0.00 36.20 4.26
683 2243 2.802816 CGCACATTCTACCCTTATGAGC 59.197 50.000 0.00 0.00 34.10 4.26
684 2244 3.804325 CACGCACATTCTACCCTTATGAG 59.196 47.826 0.00 0.00 0.00 2.90
685 2245 3.196901 ACACGCACATTCTACCCTTATGA 59.803 43.478 0.00 0.00 0.00 2.15
686 2246 3.309682 CACACGCACATTCTACCCTTATG 59.690 47.826 0.00 0.00 0.00 1.90
687 2247 3.055385 ACACACGCACATTCTACCCTTAT 60.055 43.478 0.00 0.00 0.00 1.73
688 2248 2.300723 ACACACGCACATTCTACCCTTA 59.699 45.455 0.00 0.00 0.00 2.69
689 2249 1.071699 ACACACGCACATTCTACCCTT 59.928 47.619 0.00 0.00 0.00 3.95
690 2250 0.685097 ACACACGCACATTCTACCCT 59.315 50.000 0.00 0.00 0.00 4.34
691 2251 0.796312 CACACACGCACATTCTACCC 59.204 55.000 0.00 0.00 0.00 3.69
692 2252 0.165944 GCACACACGCACATTCTACC 59.834 55.000 0.00 0.00 0.00 3.18
693 2253 0.179250 CGCACACACGCACATTCTAC 60.179 55.000 0.00 0.00 0.00 2.59
694 2254 0.598942 ACGCACACACGCACATTCTA 60.599 50.000 0.00 0.00 36.19 2.10
695 2255 1.436195 AACGCACACACGCACATTCT 61.436 50.000 0.00 0.00 36.19 2.40
696 2256 0.991770 GAACGCACACACGCACATTC 60.992 55.000 0.00 0.00 36.19 2.67
697 2257 1.010125 GAACGCACACACGCACATT 60.010 52.632 0.00 0.00 36.19 2.71
698 2258 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
699 2259 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
700 2260 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
701 2261 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
702 2262 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
703 2263 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
704 2264 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
705 2265 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
706 2266 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
707 2267 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
708 2268 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
709 2269 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
710 2270 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
711 2271 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
712 2272 3.118408 TGCATACACTCACCCCTATGAAC 60.118 47.826 0.00 0.00 0.00 3.18
713 2273 3.111484 TGCATACACTCACCCCTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
714 2274 2.434336 GTGCATACACTCACCCCTATGA 59.566 50.000 0.00 0.00 43.85 2.15
715 2275 2.803133 CGTGCATACACTCACCCCTATG 60.803 54.545 0.00 0.00 45.10 2.23
716 2276 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
717 2277 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
718 2278 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
719 2279 0.533491 TACGTGCATACACTCACCCC 59.467 55.000 0.00 0.00 45.10 4.95
720 2280 2.201732 CATACGTGCATACACTCACCC 58.798 52.381 0.00 0.00 45.10 4.61
721 2281 2.888594 ACATACGTGCATACACTCACC 58.111 47.619 0.00 0.00 45.10 4.02
722 2282 5.278604 TCATACATACGTGCATACACTCAC 58.721 41.667 0.00 0.00 45.10 3.51
723 2283 5.508200 TCATACATACGTGCATACACTCA 57.492 39.130 0.00 0.00 45.10 3.41
724 2284 4.383052 GCTCATACATACGTGCATACACTC 59.617 45.833 0.00 0.00 45.10 3.51
725 2285 4.299155 GCTCATACATACGTGCATACACT 58.701 43.478 0.00 0.00 45.10 3.55
726 2286 3.119628 CGCTCATACATACGTGCATACAC 59.880 47.826 0.00 0.00 43.76 2.90
727 2287 3.305110 CGCTCATACATACGTGCATACA 58.695 45.455 0.00 0.00 0.00 2.29
728 2288 2.090658 GCGCTCATACATACGTGCATAC 59.909 50.000 0.00 0.00 33.41 2.39
729 2289 2.030274 AGCGCTCATACATACGTGCATA 60.030 45.455 2.64 0.00 35.49 3.14
730 2290 1.139989 GCGCTCATACATACGTGCAT 58.860 50.000 0.00 0.00 33.41 3.96
731 2291 0.102300 AGCGCTCATACATACGTGCA 59.898 50.000 2.64 0.00 35.49 4.57
732 2292 1.071239 CAAGCGCTCATACATACGTGC 60.071 52.381 12.06 0.00 0.00 5.34
733 2293 2.034591 CACAAGCGCTCATACATACGTG 60.035 50.000 12.06 3.16 0.00 4.49
734 2294 2.193447 CACAAGCGCTCATACATACGT 58.807 47.619 12.06 0.00 0.00 3.57
735 2295 2.193447 ACACAAGCGCTCATACATACG 58.807 47.619 12.06 0.00 0.00 3.06
736 2296 3.243877 CAGACACAAGCGCTCATACATAC 59.756 47.826 12.06 0.00 0.00 2.39
737 2297 3.119137 ACAGACACAAGCGCTCATACATA 60.119 43.478 12.06 0.00 0.00 2.29
738 2298 2.274437 CAGACACAAGCGCTCATACAT 58.726 47.619 12.06 0.00 0.00 2.29
739 2299 1.000843 ACAGACACAAGCGCTCATACA 59.999 47.619 12.06 0.00 0.00 2.29
740 2300 1.714794 ACAGACACAAGCGCTCATAC 58.285 50.000 12.06 1.58 0.00 2.39
741 2301 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
742 2302 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
743 2303 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
744 2304 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
745 2305 0.389391 ACAGTACAGACACAAGCGCT 59.611 50.000 2.64 2.64 0.00 5.92
746 2306 0.508641 CACAGTACAGACACAAGCGC 59.491 55.000 0.00 0.00 0.00 5.92
747 2307 1.852942 ACACAGTACAGACACAAGCG 58.147 50.000 0.00 0.00 0.00 4.68
748 2308 5.728351 TTTAACACAGTACAGACACAAGC 57.272 39.130 0.00 0.00 0.00 4.01
770 2330 2.908351 AGATGCCCAATCTTGCCTTTTT 59.092 40.909 0.00 0.00 43.52 1.94
771 2331 2.543635 AGATGCCCAATCTTGCCTTTT 58.456 42.857 0.00 0.00 43.52 2.27
772 2332 2.242882 AGATGCCCAATCTTGCCTTT 57.757 45.000 0.00 0.00 43.52 3.11
780 2340 1.895131 ACACCACAAAGATGCCCAATC 59.105 47.619 0.00 0.00 35.29 2.67
781 2341 2.014010 ACACCACAAAGATGCCCAAT 57.986 45.000 0.00 0.00 0.00 3.16
782 2342 1.786937 AACACCACAAAGATGCCCAA 58.213 45.000 0.00 0.00 0.00 4.12
783 2343 2.666272 TAACACCACAAAGATGCCCA 57.334 45.000 0.00 0.00 0.00 5.36
819 2388 2.034066 CCCATCCAAGTGGTGCGT 59.966 61.111 0.00 0.00 37.57 5.24
821 2390 1.607467 AAGCCCATCCAAGTGGTGC 60.607 57.895 0.00 0.00 37.57 5.01
823 2392 1.077265 CCAAGCCCATCCAAGTGGT 59.923 57.895 0.00 0.00 37.57 4.16
831 2400 2.440980 GTGCCCTCCAAGCCCATC 60.441 66.667 0.00 0.00 0.00 3.51
832 2401 4.431131 CGTGCCCTCCAAGCCCAT 62.431 66.667 0.00 0.00 0.00 4.00
836 2405 3.365265 CAACCGTGCCCTCCAAGC 61.365 66.667 0.00 0.00 0.00 4.01
856 2816 0.722848 CGCATTGGGCATCTTTTTGC 59.277 50.000 0.00 0.00 45.17 3.68
868 2828 2.202518 CTTCGGCTTGCGCATTGG 60.203 61.111 12.75 6.01 38.10 3.16
869 2829 2.877582 GCTTCGGCTTGCGCATTG 60.878 61.111 12.75 8.94 38.10 2.82
870 2830 4.120331 GGCTTCGGCTTGCGCATT 62.120 61.111 12.75 0.00 41.44 3.56
913 2873 4.012895 GTCATATTGGGCCGCGCG 62.013 66.667 25.67 25.67 0.00 6.86
950 2920 1.305718 GGGCTCTGGAGTCTGGAGT 60.306 63.158 2.19 0.00 32.63 3.85
954 2924 1.329171 CCTCTGGGCTCTGGAGTCTG 61.329 65.000 2.19 0.00 32.63 3.51
955 2925 1.001503 CCTCTGGGCTCTGGAGTCT 59.998 63.158 2.19 0.00 32.63 3.24
956 2926 0.616111 TTCCTCTGGGCTCTGGAGTC 60.616 60.000 6.44 0.00 0.00 3.36
957 2927 0.617249 CTTCCTCTGGGCTCTGGAGT 60.617 60.000 6.44 0.00 0.00 3.85
961 2931 2.254737 CTGGCTTCCTCTGGGCTCTG 62.255 65.000 0.00 0.00 0.00 3.35
976 2946 3.293702 AGAGAAGACGCCTCTGGC 58.706 61.111 0.00 0.00 46.75 4.85
981 2951 4.443266 GCCGCAGAGAAGACGCCT 62.443 66.667 0.00 0.00 0.00 5.52
1025 3007 2.584418 CGCTCATCACCTGCTCCG 60.584 66.667 0.00 0.00 0.00 4.63
1110 3092 1.206371 GGCTGTTCTTTACCTAGCGGA 59.794 52.381 0.00 0.00 35.31 5.54
1145 3132 1.254284 CGCCTGAGAACAGAGGAGGT 61.254 60.000 0.00 0.00 46.03 3.85
1186 3173 3.843240 GAGCCAAGAAGCGACGCG 61.843 66.667 15.18 3.53 38.01 6.01
1190 3177 0.391661 GGATGTGAGCCAAGAAGCGA 60.392 55.000 0.00 0.00 38.01 4.93
1232 3219 1.157257 ATTGTTGACACGTCAGCGCA 61.157 50.000 11.47 3.98 42.66 6.09
1234 3221 0.581529 ACATTGTTGACACGTCAGCG 59.418 50.000 9.11 0.00 42.66 5.18
1247 3234 3.945285 CGGGTGGCTCTATAAAACATTGT 59.055 43.478 0.00 0.00 0.00 2.71
1249 3236 3.201266 TCCGGGTGGCTCTATAAAACATT 59.799 43.478 0.00 0.00 34.14 2.71
1257 3245 2.844839 GCCTCCGGGTGGCTCTAT 60.845 66.667 28.34 0.00 46.38 1.98
1331 3328 1.004277 AAAACTCACTCGCTCGCTCG 61.004 55.000 0.00 0.00 0.00 5.03
1358 3355 1.357137 TCACCATCCACCAGCTACAA 58.643 50.000 0.00 0.00 0.00 2.41
1519 3531 0.320683 CACCGACAAGGACAGATGCA 60.321 55.000 0.00 0.00 45.00 3.96
1657 3681 2.891191 AGGGAATCCGGCACTAAAAA 57.109 45.000 0.00 0.00 38.33 1.94
1661 3685 1.342674 ACACTAGGGAATCCGGCACTA 60.343 52.381 0.00 0.00 38.33 2.74
1673 3697 3.119424 GGAAAGACGAGAAGACACTAGGG 60.119 52.174 0.00 0.00 0.00 3.53
1694 3724 4.392921 ACTATGGATCACAGACGAAAGG 57.607 45.455 0.00 0.00 0.00 3.11
1713 3743 3.056607 AGCAACAACAGCAGAAACAAACT 60.057 39.130 0.00 0.00 0.00 2.66
1756 3787 2.076863 ACAAAGTCGGTTAGCAGCATC 58.923 47.619 0.00 0.00 0.00 3.91
1867 3899 4.636206 GTGGAAGGATTCTGTGTATCAACC 59.364 45.833 0.00 0.00 46.56 3.77
1874 3906 3.490348 CAAAGGTGGAAGGATTCTGTGT 58.510 45.455 0.00 0.00 46.56 3.72
1875 3907 2.229784 GCAAAGGTGGAAGGATTCTGTG 59.770 50.000 0.00 0.00 46.56 3.66
1902 3934 8.308931 TGTACAGAGTGGTAATAAAACTCGAAT 58.691 33.333 0.00 0.00 44.07 3.34
1906 3938 7.876582 ACCTTGTACAGAGTGGTAATAAAACTC 59.123 37.037 9.25 0.00 40.53 3.01
1976 4022 0.829333 AACCTGGCAAACATTGTGCA 59.171 45.000 0.00 0.00 44.07 4.57
2154 4446 6.509418 TTGGTTGCTCCATGTATTACTTTC 57.491 37.500 2.36 0.00 46.60 2.62
2174 4466 4.389687 GCAACATGGCATAAGAAACTTTGG 59.610 41.667 0.00 0.00 0.00 3.28
2378 4670 2.928334 ACCTTGGATCAGATGCATCAC 58.072 47.619 27.81 15.16 0.00 3.06
2431 4724 6.306987 ACTCAGAAGTCCATGGTAAACAATT 58.693 36.000 12.58 0.00 0.00 2.32
2460 4753 0.109723 AGGTTAAGCTCGGTGCCAAA 59.890 50.000 0.12 0.00 44.23 3.28
2477 4941 6.479990 TCGAACTGCATTGAAGAACATATAGG 59.520 38.462 0.00 0.00 0.00 2.57
2478 4942 7.468922 TCGAACTGCATTGAAGAACATATAG 57.531 36.000 0.00 0.00 0.00 1.31
2591 5055 4.438148 TCACTGTGTCGAAGAACAAATCA 58.562 39.130 7.79 0.00 39.69 2.57
2628 5092 2.265367 TGATACCTTCTTGGCACCAGA 58.735 47.619 0.00 0.00 40.22 3.86
2629 5093 2.787473 TGATACCTTCTTGGCACCAG 57.213 50.000 0.00 0.00 40.22 4.00
2666 5132 8.763984 AGCTGGATTTCTTTGATCAGATAAAT 57.236 30.769 8.72 8.72 0.00 1.40
2667 5133 9.685276 TTAGCTGGATTTCTTTGATCAGATAAA 57.315 29.630 0.00 0.00 0.00 1.40
2674 5140 8.723942 TCTTAGTTAGCTGGATTTCTTTGATC 57.276 34.615 0.00 0.00 0.00 2.92
2679 5145 6.657875 AGCATCTTAGTTAGCTGGATTTCTT 58.342 36.000 0.00 0.00 35.72 2.52
2693 5159 7.619050 TGAATCTTTCTCTCAAGCATCTTAGT 58.381 34.615 0.00 0.00 0.00 2.24
2694 5160 7.980662 TCTGAATCTTTCTCTCAAGCATCTTAG 59.019 37.037 0.00 0.00 0.00 2.18
2702 5168 7.558604 AGGAGAATCTGAATCTTTCTCTCAAG 58.441 38.462 14.84 0.00 43.09 3.02
2710 5176 6.890814 AGATGCAAAGGAGAATCTGAATCTTT 59.109 34.615 0.00 0.00 33.73 2.52
2715 5181 4.914983 ACAGATGCAAAGGAGAATCTGAA 58.085 39.130 16.67 0.00 45.81 3.02
2737 5203 3.517901 CCAGGGTCAAGTACATCACCTAA 59.482 47.826 0.00 0.00 0.00 2.69
2744 5210 3.772025 CTCTTCTCCAGGGTCAAGTACAT 59.228 47.826 0.00 0.00 0.00 2.29
2793 5259 2.036006 TAACCATTGGCCACGACGC 61.036 57.895 3.88 0.00 0.00 5.19
2841 5307 7.950684 AGTATCTAGCAAGGATGTTACCATCTA 59.049 37.037 0.00 0.00 45.66 1.98
3006 5472 2.187958 CCCTGATGTACTGAGGAACCA 58.812 52.381 6.89 0.00 0.00 3.67
3096 5562 9.847224 TCTGAACTCCTCTAAAATTTGTAAACT 57.153 29.630 0.00 0.00 0.00 2.66
3145 5611 5.124036 TCCTAGGGGGAACACATAATTTG 57.876 43.478 9.46 0.00 41.91 2.32
3216 5682 8.458573 TGCAAGGTTTCTTTTCTATAACTTGA 57.541 30.769 0.00 0.00 0.00 3.02
3260 5728 6.935208 TGGATAGATTCATGATCAGAGCAAAG 59.065 38.462 0.09 0.00 37.22 2.77
3281 5749 2.019984 GCCGAAGAAAAGATGCTGGAT 58.980 47.619 0.00 0.00 0.00 3.41
3284 5752 2.539346 CAGCCGAAGAAAAGATGCTG 57.461 50.000 0.00 0.00 40.05 4.41
3298 5766 2.015736 AAGCTCATTAGACACAGCCG 57.984 50.000 0.00 0.00 31.81 5.52
3413 5882 3.498397 CACCACCACATCACTTGTAACTC 59.502 47.826 0.00 0.00 36.57 3.01
3537 6076 6.316390 CCTCGGTCATTAAGCAGATACTTTTT 59.684 38.462 0.00 0.00 0.00 1.94
3538 6077 5.817816 CCTCGGTCATTAAGCAGATACTTTT 59.182 40.000 0.00 0.00 0.00 2.27
3545 6084 1.480954 GGACCTCGGTCATTAAGCAGA 59.519 52.381 17.21 0.00 46.20 4.26
3607 6146 7.669427 TGTAATGTTTCTTTTCAATGGAGCAT 58.331 30.769 0.00 0.00 0.00 3.79
3731 6270 9.613428 CCTACAATCATGGAGTAAAAACTATCA 57.387 33.333 0.00 0.00 35.54 2.15
3745 6284 4.443457 CCAGTGTACTCCCTACAATCATGG 60.443 50.000 0.00 0.00 37.09 3.66
3782 6326 4.035278 AGCTATCTGTCTGTTACGCTTC 57.965 45.455 0.00 0.00 0.00 3.86
3788 6332 4.251103 TCCTGGAGCTATCTGTCTGTTA 57.749 45.455 0.00 0.00 0.00 2.41
3793 6337 4.679373 TTCATTCCTGGAGCTATCTGTC 57.321 45.455 0.00 0.00 0.00 3.51
3798 6342 5.643421 AACAGATTCATTCCTGGAGCTAT 57.357 39.130 0.00 0.00 34.85 2.97
3799 6343 5.453903 GCTAACAGATTCATTCCTGGAGCTA 60.454 44.000 0.00 0.00 38.92 3.32
3821 6365 4.401657 GGACATCCCTACCTGGCT 57.598 61.111 0.00 0.00 0.00 4.75
3893 6444 1.000938 GCTCTGTTGGAAGCCAAACTG 60.001 52.381 0.00 1.13 45.73 3.16
3983 6541 5.595885 CTCAGAATGGAGGTACATACACAG 58.404 45.833 0.00 0.00 36.16 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.