Multiple sequence alignment - TraesCS7D01G512400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G512400 chr7D 100.000 3541 0 0 1 3541 614082844 614079304 0.000000e+00 6540
1 TraesCS7D01G512400 chr7D 89.988 869 57 9 2695 3541 339046928 339047788 0.000000e+00 1096
2 TraesCS7D01G512400 chr7D 89.753 849 61 19 2695 3541 339844255 339843431 0.000000e+00 1062
3 TraesCS7D01G512400 chr7D 86.521 868 82 25 2691 3541 465773891 465774740 0.000000e+00 922
4 TraesCS7D01G512400 chr7D 93.548 310 20 0 3232 3541 340617926 340617617 2.490000e-126 462
5 TraesCS7D01G512400 chr7D 91.837 245 15 3 2452 2692 626641166 626641409 1.570000e-88 337
6 TraesCS7D01G512400 chr7D 85.714 70 10 0 1439 1508 614059268 614059337 1.360000e-09 75
7 TraesCS7D01G512400 chr7A 86.301 1314 154 17 1065 2373 706130672 706131964 0.000000e+00 1406
8 TraesCS7D01G512400 chr7A 88.071 679 67 8 1485 2155 706115393 706116065 0.000000e+00 793
9 TraesCS7D01G512400 chr7A 80.282 213 34 6 1087 1298 706137547 706137752 1.700000e-33 154
10 TraesCS7D01G512400 chr7A 91.089 101 8 1 967 1067 706129709 706129808 6.170000e-28 135
11 TraesCS7D01G512400 chr4D 97.006 835 23 2 116 949 25216801 25217634 0.000000e+00 1402
12 TraesCS7D01G512400 chr4D 90.726 248 18 2 2452 2695 123530602 123530356 3.410000e-85 326
13 TraesCS7D01G512400 chr4D 90.726 248 18 2 2452 2695 123603728 123603482 3.410000e-85 326
14 TraesCS7D01G512400 chr5D 96.140 829 29 3 121 948 483112785 483111959 0.000000e+00 1351
15 TraesCS7D01G512400 chr5D 93.405 834 51 3 120 949 168013454 168014287 0.000000e+00 1232
16 TraesCS7D01G512400 chr5D 90.834 851 54 18 2694 3541 443000301 442999472 0.000000e+00 1118
17 TraesCS7D01G512400 chr3D 94.069 843 45 5 111 951 374392353 374393192 0.000000e+00 1275
18 TraesCS7D01G512400 chr3D 93.387 862 48 9 102 957 607326547 607327405 0.000000e+00 1267
19 TraesCS7D01G512400 chr3D 93.389 832 49 6 121 948 115642979 115643808 0.000000e+00 1227
20 TraesCS7D01G512400 chr3D 87.731 864 73 26 2695 3541 26618168 26619015 0.000000e+00 977
21 TraesCS7D01G512400 chr3D 90.726 248 18 2 2452 2695 399710048 399709802 3.410000e-85 326
22 TraesCS7D01G512400 chr2D 93.833 827 45 6 121 946 56529438 56530259 0.000000e+00 1240
23 TraesCS7D01G512400 chr6B 93.405 834 49 6 120 948 603239704 603240536 0.000000e+00 1230
24 TraesCS7D01G512400 chr7B 93.261 831 53 3 121 948 378922078 378921248 0.000000e+00 1221
25 TraesCS7D01G512400 chr6D 92.506 854 50 10 2695 3541 85963531 85964377 0.000000e+00 1210
26 TraesCS7D01G512400 chr6D 88.734 861 70 12 2694 3541 213990329 213991175 0.000000e+00 1027
27 TraesCS7D01G512400 chr1D 91.224 866 53 10 2694 3541 194787887 194787027 0.000000e+00 1157
28 TraesCS7D01G512400 chr1D 89.130 782 69 12 2763 3541 176361694 176362462 0.000000e+00 959
29 TraesCS7D01G512400 chr4A 91.837 245 15 2 2452 2692 105655269 105655512 1.570000e-88 337
30 TraesCS7D01G512400 chr4A 91.020 245 17 2 2452 2692 552128880 552129123 3.410000e-85 326
31 TraesCS7D01G512400 chr3B 91.358 243 16 2 2454 2692 201586933 201587174 9.480000e-86 327
32 TraesCS7D01G512400 chr3A 90.726 248 18 2 2452 2695 725785103 725784857 3.410000e-85 326
33 TraesCS7D01G512400 chr1B 90.650 246 18 2 2454 2695 683695469 683695225 4.410000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G512400 chr7D 614079304 614082844 3540 True 6540.0 6540 100.000 1 3541 1 chr7D.!!$R3 3540
1 TraesCS7D01G512400 chr7D 339046928 339047788 860 False 1096.0 1096 89.988 2695 3541 1 chr7D.!!$F1 846
2 TraesCS7D01G512400 chr7D 339843431 339844255 824 True 1062.0 1062 89.753 2695 3541 1 chr7D.!!$R1 846
3 TraesCS7D01G512400 chr7D 465773891 465774740 849 False 922.0 922 86.521 2691 3541 1 chr7D.!!$F2 850
4 TraesCS7D01G512400 chr7A 706115393 706116065 672 False 793.0 793 88.071 1485 2155 1 chr7A.!!$F1 670
5 TraesCS7D01G512400 chr7A 706129709 706131964 2255 False 770.5 1406 88.695 967 2373 2 chr7A.!!$F3 1406
6 TraesCS7D01G512400 chr4D 25216801 25217634 833 False 1402.0 1402 97.006 116 949 1 chr4D.!!$F1 833
7 TraesCS7D01G512400 chr5D 483111959 483112785 826 True 1351.0 1351 96.140 121 948 1 chr5D.!!$R2 827
8 TraesCS7D01G512400 chr5D 168013454 168014287 833 False 1232.0 1232 93.405 120 949 1 chr5D.!!$F1 829
9 TraesCS7D01G512400 chr5D 442999472 443000301 829 True 1118.0 1118 90.834 2694 3541 1 chr5D.!!$R1 847
10 TraesCS7D01G512400 chr3D 374392353 374393192 839 False 1275.0 1275 94.069 111 951 1 chr3D.!!$F3 840
11 TraesCS7D01G512400 chr3D 607326547 607327405 858 False 1267.0 1267 93.387 102 957 1 chr3D.!!$F4 855
12 TraesCS7D01G512400 chr3D 115642979 115643808 829 False 1227.0 1227 93.389 121 948 1 chr3D.!!$F2 827
13 TraesCS7D01G512400 chr3D 26618168 26619015 847 False 977.0 977 87.731 2695 3541 1 chr3D.!!$F1 846
14 TraesCS7D01G512400 chr2D 56529438 56530259 821 False 1240.0 1240 93.833 121 946 1 chr2D.!!$F1 825
15 TraesCS7D01G512400 chr6B 603239704 603240536 832 False 1230.0 1230 93.405 120 948 1 chr6B.!!$F1 828
16 TraesCS7D01G512400 chr7B 378921248 378922078 830 True 1221.0 1221 93.261 121 948 1 chr7B.!!$R1 827
17 TraesCS7D01G512400 chr6D 85963531 85964377 846 False 1210.0 1210 92.506 2695 3541 1 chr6D.!!$F1 846
18 TraesCS7D01G512400 chr6D 213990329 213991175 846 False 1027.0 1027 88.734 2694 3541 1 chr6D.!!$F2 847
19 TraesCS7D01G512400 chr1D 194787027 194787887 860 True 1157.0 1157 91.224 2694 3541 1 chr1D.!!$R1 847
20 TraesCS7D01G512400 chr1D 176361694 176362462 768 False 959.0 959 89.130 2763 3541 1 chr1D.!!$F1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.107214 CAGCCAATACGGACCCATGT 60.107 55.0 0.00 0.00 36.56 3.21 F
988 1002 0.317160 TTCTGATGCTATACGGCCGG 59.683 55.0 31.76 12.94 0.00 6.13 F
1928 2816 0.108138 CGCCTTAGAGTTCCAGGGTG 60.108 60.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 1037 0.042708 CTCGATGCTTGTATGCACGC 60.043 55.0 5.29 5.29 46.33 5.34 R
2235 3123 0.034574 TGTATTGTCGGCAGGCCATT 60.035 50.0 5.01 0.00 35.37 3.16 R
2892 3804 1.273759 GGAGAAGAACCGGTTACCCT 58.726 55.0 22.33 16.58 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.061848 CCCACCGCCCACAACATC 61.062 66.667 0.00 0.00 0.00 3.06
29 30 3.430862 CCACCGCCCACAACATCG 61.431 66.667 0.00 0.00 0.00 3.84
30 31 3.430862 CACCGCCCACAACATCGG 61.431 66.667 0.00 0.00 46.61 4.18
36 37 3.133464 CCACAACATCGGCGCCAT 61.133 61.111 28.98 16.24 0.00 4.40
37 38 2.100797 CACAACATCGGCGCCATG 59.899 61.111 28.98 27.71 0.00 3.66
38 39 3.814268 ACAACATCGGCGCCATGC 61.814 61.111 28.98 0.00 45.38 4.06
39 40 3.511595 CAACATCGGCGCCATGCT 61.512 61.111 28.98 16.92 45.43 3.79
59 60 4.947147 TGGGAGCGGCGCTGTTTT 62.947 61.111 41.51 16.21 39.88 2.43
60 61 4.404654 GGGAGCGGCGCTGTTTTG 62.405 66.667 41.51 0.00 39.88 2.44
61 62 4.404654 GGAGCGGCGCTGTTTTGG 62.405 66.667 41.51 0.00 39.88 3.28
62 63 3.353836 GAGCGGCGCTGTTTTGGA 61.354 61.111 41.51 0.00 39.88 3.53
63 64 2.672996 AGCGGCGCTGTTTTGGAT 60.673 55.556 36.00 6.04 37.57 3.41
64 65 1.366111 GAGCGGCGCTGTTTTGGATA 61.366 55.000 41.51 0.00 39.88 2.59
65 66 1.226295 GCGGCGCTGTTTTGGATAC 60.226 57.895 26.86 0.00 0.00 2.24
66 67 1.060308 CGGCGCTGTTTTGGATACG 59.940 57.895 8.45 0.00 42.51 3.06
67 68 1.632046 CGGCGCTGTTTTGGATACGT 61.632 55.000 8.45 0.00 42.51 3.57
68 69 1.361793 GGCGCTGTTTTGGATACGTA 58.638 50.000 7.64 0.00 42.51 3.57
69 70 1.061566 GGCGCTGTTTTGGATACGTAC 59.938 52.381 7.64 0.00 42.51 3.67
70 71 1.266696 GCGCTGTTTTGGATACGTACG 60.267 52.381 15.01 15.01 42.51 3.67
71 72 1.266696 CGCTGTTTTGGATACGTACGC 60.267 52.381 16.72 0.00 42.51 4.42
72 73 1.061566 GCTGTTTTGGATACGTACGCC 59.938 52.381 16.72 9.42 42.51 5.68
73 74 2.339418 CTGTTTTGGATACGTACGCCA 58.661 47.619 16.72 12.22 42.51 5.69
74 75 2.067766 TGTTTTGGATACGTACGCCAC 58.932 47.619 16.72 6.40 42.51 5.01
75 76 2.067766 GTTTTGGATACGTACGCCACA 58.932 47.619 16.72 5.13 42.51 4.17
76 77 2.674357 GTTTTGGATACGTACGCCACAT 59.326 45.455 16.72 3.47 42.51 3.21
77 78 1.929230 TTGGATACGTACGCCACATG 58.071 50.000 16.72 0.00 42.51 3.21
78 79 0.528901 TGGATACGTACGCCACATGC 60.529 55.000 16.72 9.46 42.51 4.06
79 80 0.528901 GGATACGTACGCCACATGCA 60.529 55.000 16.72 0.00 41.33 3.96
80 81 1.282817 GATACGTACGCCACATGCAA 58.717 50.000 16.72 0.00 41.33 4.08
81 82 1.003851 ATACGTACGCCACATGCAAC 58.996 50.000 16.72 0.00 41.33 4.17
82 83 0.319641 TACGTACGCCACATGCAACA 60.320 50.000 16.72 0.00 41.33 3.33
83 84 1.154488 CGTACGCCACATGCAACAC 60.154 57.895 0.52 0.00 41.33 3.32
84 85 1.154488 GTACGCCACATGCAACACG 60.154 57.895 0.00 0.00 41.33 4.49
85 86 2.321333 TACGCCACATGCAACACGG 61.321 57.895 0.00 0.00 41.33 4.94
93 94 2.911509 TGCAACACGGCAGCCAAT 60.912 55.556 13.30 0.00 39.25 3.16
94 95 1.602041 TGCAACACGGCAGCCAATA 60.602 52.632 13.30 0.00 39.25 1.90
95 96 1.154035 GCAACACGGCAGCCAATAC 60.154 57.895 13.30 0.00 0.00 1.89
96 97 1.134487 CAACACGGCAGCCAATACG 59.866 57.895 13.30 0.00 0.00 3.06
97 98 2.038269 AACACGGCAGCCAATACGG 61.038 57.895 13.30 0.00 38.11 4.02
98 99 2.125310 CACGGCAGCCAATACGGA 60.125 61.111 13.30 0.00 36.56 4.69
99 100 2.125269 ACGGCAGCCAATACGGAC 60.125 61.111 13.30 0.00 36.56 4.79
100 101 2.895372 CGGCAGCCAATACGGACC 60.895 66.667 13.30 0.00 36.56 4.46
101 102 2.516225 GGCAGCCAATACGGACCC 60.516 66.667 6.55 0.00 36.56 4.46
102 103 2.270850 GCAGCCAATACGGACCCA 59.729 61.111 0.00 0.00 36.56 4.51
103 104 1.152963 GCAGCCAATACGGACCCAT 60.153 57.895 0.00 0.00 36.56 4.00
104 105 1.447317 GCAGCCAATACGGACCCATG 61.447 60.000 0.00 0.00 36.56 3.66
105 106 0.107214 CAGCCAATACGGACCCATGT 60.107 55.000 0.00 0.00 36.56 3.21
106 107 1.140052 CAGCCAATACGGACCCATGTA 59.860 52.381 0.00 0.00 36.56 2.29
107 108 2.054799 AGCCAATACGGACCCATGTAT 58.945 47.619 0.00 0.00 36.56 2.29
108 109 2.151202 GCCAATACGGACCCATGTATG 58.849 52.381 0.00 0.00 36.56 2.39
109 110 2.486548 GCCAATACGGACCCATGTATGT 60.487 50.000 0.00 0.00 36.56 2.29
110 111 3.815809 CCAATACGGACCCATGTATGTT 58.184 45.455 0.00 0.00 36.56 2.71
111 112 4.744259 GCCAATACGGACCCATGTATGTTA 60.744 45.833 0.00 0.00 36.56 2.41
859 873 7.594758 CGAAAACCAAAAAGATTTCTGCTGATA 59.405 33.333 0.00 0.00 31.29 2.15
889 903 3.669536 TCATACGTGGCAAAATGAGTGA 58.330 40.909 0.00 0.00 0.00 3.41
953 967 4.202131 TGGGCGTTAGTTTTTCCGATTTTT 60.202 37.500 0.00 0.00 0.00 1.94
973 987 3.396260 TTTTACGGTCCCTGAGTTCTG 57.604 47.619 0.00 0.00 0.00 3.02
974 988 2.297698 TTACGGTCCCTGAGTTCTGA 57.702 50.000 0.00 0.00 0.00 3.27
988 1002 0.317160 TTCTGATGCTATACGGCCGG 59.683 55.000 31.76 12.94 0.00 6.13
996 1010 0.529119 CTATACGGCCGGACACCAAC 60.529 60.000 31.76 0.00 0.00 3.77
1001 1015 1.375523 GGCCGGACACCAACACTAG 60.376 63.158 5.05 0.00 0.00 2.57
1056 1070 0.466124 ATCGAGCAGGAAACCCTAGC 59.534 55.000 0.00 0.00 31.47 3.42
1058 1072 1.112113 CGAGCAGGAAACCCTAGCTA 58.888 55.000 0.00 0.00 37.89 3.32
1059 1073 1.067821 CGAGCAGGAAACCCTAGCTAG 59.932 57.143 14.20 14.20 37.89 3.42
1081 1961 4.822350 AGATCAATCGAAGGTATGTCTCGA 59.178 41.667 0.00 0.00 37.24 4.04
1290 2170 4.717629 TCGCTCGTTCCTGCCGTG 62.718 66.667 0.00 0.00 0.00 4.94
1297 2177 2.032528 TTCCTGCCGTGGCTTCTG 59.967 61.111 12.84 0.13 42.51 3.02
1300 2180 3.114616 CTGCCGTGGCTTCTGACG 61.115 66.667 12.84 0.00 42.51 4.35
1354 2234 3.207669 GGCCGCCTCATTCTGCAG 61.208 66.667 7.63 7.63 0.00 4.41
1355 2235 2.437359 GCCGCCTCATTCTGCAGT 60.437 61.111 14.67 0.00 0.00 4.40
1366 2246 3.414700 CTGCAGTCCGCCGTCAAC 61.415 66.667 5.25 0.00 41.33 3.18
1375 2255 2.943978 CGCCGTCAACTTCTCCCCT 61.944 63.158 0.00 0.00 0.00 4.79
1400 2280 2.256158 CGCCACGGTCGAAGTACA 59.744 61.111 0.00 0.00 0.00 2.90
1402 2282 1.288127 GCCACGGTCGAAGTACAGT 59.712 57.895 0.00 0.00 0.00 3.55
1411 2291 2.086869 TCGAAGTACAGTTACGAGGGG 58.913 52.381 0.00 0.00 32.93 4.79
1412 2292 2.086869 CGAAGTACAGTTACGAGGGGA 58.913 52.381 0.00 0.00 32.93 4.81
1415 2295 3.666345 AGTACAGTTACGAGGGGATCT 57.334 47.619 0.00 0.00 32.93 2.75
1416 2296 3.978610 AGTACAGTTACGAGGGGATCTT 58.021 45.455 0.00 0.00 32.93 2.40
1418 2298 3.889520 ACAGTTACGAGGGGATCTTTC 57.110 47.619 0.00 0.00 0.00 2.62
1513 2393 3.537874 ACGGATACAGGAGCGGGC 61.538 66.667 0.00 0.00 0.00 6.13
1658 2542 2.175184 CTGTTCAACCGGCAAGCTCG 62.175 60.000 0.00 0.00 0.00 5.03
1663 2547 0.248866 CAACCGGCAAGCTCGTTTTT 60.249 50.000 0.00 0.00 0.00 1.94
1702 2586 4.664677 GGCGACACAGCGTGGACT 62.665 66.667 12.18 0.00 37.94 3.85
1724 2608 4.245660 TCTGATGAAAACGAAGCTCGATT 58.754 39.130 11.64 4.36 43.74 3.34
1740 2624 6.672147 AGCTCGATTATTTGCCAAATATCAC 58.328 36.000 10.51 5.13 33.64 3.06
1741 2625 5.565259 GCTCGATTATTTGCCAAATATCACG 59.435 40.000 10.51 14.57 33.64 4.35
1747 2631 9.382244 GATTATTTGCCAAATATCACGAACTAC 57.618 33.333 10.51 0.00 33.64 2.73
1755 2639 6.036083 CCAAATATCACGAACTACAGTGGAAG 59.964 42.308 0.00 0.00 38.77 3.46
1756 2640 5.916661 ATATCACGAACTACAGTGGAAGT 57.083 39.130 0.00 0.00 38.77 3.01
1757 2641 3.364889 TCACGAACTACAGTGGAAGTG 57.635 47.619 0.00 0.00 44.80 3.16
1758 2642 2.035449 TCACGAACTACAGTGGAAGTGG 59.965 50.000 0.00 0.00 43.12 4.00
1759 2643 2.035449 CACGAACTACAGTGGAAGTGGA 59.965 50.000 0.00 0.00 43.12 4.02
1760 2644 2.696707 ACGAACTACAGTGGAAGTGGAA 59.303 45.455 0.00 0.00 43.12 3.53
1761 2645 3.323979 ACGAACTACAGTGGAAGTGGAAT 59.676 43.478 0.00 0.00 43.12 3.01
1762 2646 3.927142 CGAACTACAGTGGAAGTGGAATC 59.073 47.826 0.00 0.00 43.12 2.52
1781 2665 1.147473 CACTGCGCTGTATCACAACA 58.853 50.000 20.04 0.00 0.00 3.33
1808 2696 0.598065 CTTGGTGTGCCTAGGTTTGC 59.402 55.000 11.31 0.00 34.61 3.68
1825 2713 3.880591 CACTGGTGCATCCTCACG 58.119 61.111 0.00 0.00 37.83 4.35
1828 2716 2.046988 TGGTGCATCCTCACGCTG 60.047 61.111 0.00 0.00 37.83 5.18
1845 2733 2.737376 GGAAGACGACGGTGCCAC 60.737 66.667 0.00 0.00 0.00 5.01
1847 2735 3.509137 GAAGACGACGGTGCCACCA 62.509 63.158 15.45 0.00 38.47 4.17
1849 2737 3.986006 GACGACGGTGCCACCAGA 61.986 66.667 15.45 0.00 38.47 3.86
1928 2816 0.108138 CGCCTTAGAGTTCCAGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
1938 2826 0.550914 TTCCAGGGTGAGCTGTTGTT 59.449 50.000 0.00 0.00 0.00 2.83
1952 2840 3.807209 GCTGTTGTTGGTCACAGTCCTAT 60.807 47.826 1.55 0.00 36.48 2.57
1954 2842 4.133820 TGTTGTTGGTCACAGTCCTATTG 58.866 43.478 0.00 0.00 36.48 1.90
1985 2873 2.951642 CACACAAGAGAAACACCCATGT 59.048 45.455 0.00 0.00 42.46 3.21
1996 2884 1.494721 ACACCCATGTTGTCTCTGGTT 59.505 47.619 0.00 0.00 34.46 3.67
1999 2887 2.154462 CCCATGTTGTCTCTGGTTGTC 58.846 52.381 0.00 0.00 0.00 3.18
2026 2914 1.071542 TGGGACGAAGACAAGATGCAA 59.928 47.619 0.00 0.00 0.00 4.08
2156 3044 5.819901 GCCTACTTCATCTTCAATAGCAACT 59.180 40.000 0.00 0.00 0.00 3.16
2159 3047 7.439655 CCTACTTCATCTTCAATAGCAACTACC 59.560 40.741 0.00 0.00 0.00 3.18
2160 3048 6.116126 ACTTCATCTTCAATAGCAACTACCC 58.884 40.000 0.00 0.00 0.00 3.69
2162 3050 4.161565 TCATCTTCAATAGCAACTACCCGT 59.838 41.667 0.00 0.00 0.00 5.28
2163 3051 4.546829 TCTTCAATAGCAACTACCCGTT 57.453 40.909 0.00 0.00 35.88 4.44
2164 3052 4.501071 TCTTCAATAGCAACTACCCGTTC 58.499 43.478 0.00 0.00 32.27 3.95
2165 3053 3.255969 TCAATAGCAACTACCCGTTCC 57.744 47.619 0.00 0.00 32.27 3.62
2166 3054 2.835764 TCAATAGCAACTACCCGTTCCT 59.164 45.455 0.00 0.00 32.27 3.36
2167 3055 2.936498 CAATAGCAACTACCCGTTCCTG 59.064 50.000 0.00 0.00 32.27 3.86
2168 3056 0.899720 TAGCAACTACCCGTTCCTGG 59.100 55.000 0.00 0.00 32.27 4.45
2169 3057 0.834687 AGCAACTACCCGTTCCTGGA 60.835 55.000 0.00 0.00 32.27 3.86
2170 3058 0.672711 GCAACTACCCGTTCCTGGAC 60.673 60.000 0.00 0.00 32.27 4.02
2171 3059 0.389426 CAACTACCCGTTCCTGGACG 60.389 60.000 0.00 3.75 42.43 4.79
2172 3060 0.829182 AACTACCCGTTCCTGGACGT 60.829 55.000 14.47 0.00 41.26 4.34
2176 3064 1.227734 CCCGTTCCTGGACGTGTTT 60.228 57.895 14.47 0.00 41.26 2.83
2185 3073 3.062042 CCTGGACGTGTTTAGGTACAAC 58.938 50.000 0.00 0.00 35.27 3.32
2191 3079 6.424509 TGGACGTGTTTAGGTACAACTTTATG 59.575 38.462 0.00 0.00 32.84 1.90
2202 3090 6.151144 AGGTACAACTTTATGAACAATGAGGC 59.849 38.462 0.00 0.00 0.00 4.70
2204 3092 4.082787 ACAACTTTATGAACAATGAGGCCG 60.083 41.667 0.00 0.00 0.00 6.13
2232 3120 2.888513 CTCGTTGAGCACCTTCATTG 57.111 50.000 0.00 0.00 0.00 2.82
2235 3123 1.881925 CGTTGAGCACCTTCATTGGGA 60.882 52.381 0.00 0.00 0.00 4.37
2245 3133 0.977108 TTCATTGGGAATGGCCTGCC 60.977 55.000 3.32 0.00 39.38 4.85
2255 3143 0.748005 ATGGCCTGCCGACAATACAC 60.748 55.000 3.32 0.00 39.42 2.90
2274 3162 2.280552 GGGACGTGTACTGGCTCCA 61.281 63.158 0.00 0.00 0.00 3.86
2327 3215 2.820037 GGAAAAGGCTCGGGCTCG 60.820 66.667 7.48 0.00 37.50 5.03
2349 3237 2.574369 AGAAACCACATCCACGGGATAA 59.426 45.455 5.27 0.00 40.98 1.75
2350 3238 3.202151 AGAAACCACATCCACGGGATAAT 59.798 43.478 5.27 0.00 40.98 1.28
2357 3245 5.534654 CCACATCCACGGGATAATTTTGTAT 59.465 40.000 5.27 0.00 40.98 2.29
2360 3248 4.527944 TCCACGGGATAATTTTGTATGCA 58.472 39.130 0.00 0.00 0.00 3.96
2374 3262 6.561737 TTTGTATGCAAAAGATACGTTGGA 57.438 33.333 6.49 0.00 41.15 3.53
2375 3263 5.539582 TGTATGCAAAAGATACGTTGGAC 57.460 39.130 0.00 0.00 0.00 4.02
2376 3264 6.836314 TTTGTATGCAAAAGATACGTTGGACG 60.836 38.462 6.49 0.00 43.24 4.79
2385 3273 3.414700 CGTTGGACGCTGCCTCAC 61.415 66.667 0.00 0.00 33.65 3.51
2386 3274 2.280797 GTTGGACGCTGCCTCACA 60.281 61.111 0.00 0.00 0.00 3.58
2387 3275 1.891919 GTTGGACGCTGCCTCACAA 60.892 57.895 0.00 0.00 0.00 3.33
2388 3276 1.073025 TTGGACGCTGCCTCACAAT 59.927 52.632 0.00 0.00 0.00 2.71
2389 3277 0.323302 TTGGACGCTGCCTCACAATA 59.677 50.000 0.00 0.00 0.00 1.90
2390 3278 0.323302 TGGACGCTGCCTCACAATAA 59.677 50.000 0.00 0.00 0.00 1.40
2391 3279 0.727398 GGACGCTGCCTCACAATAAC 59.273 55.000 0.00 0.00 0.00 1.89
2392 3280 0.727398 GACGCTGCCTCACAATAACC 59.273 55.000 0.00 0.00 0.00 2.85
2393 3281 1.019278 ACGCTGCCTCACAATAACCG 61.019 55.000 0.00 0.00 0.00 4.44
2394 3282 1.429423 GCTGCCTCACAATAACCGC 59.571 57.895 0.00 0.00 0.00 5.68
2395 3283 1.026718 GCTGCCTCACAATAACCGCT 61.027 55.000 0.00 0.00 0.00 5.52
2396 3284 1.453155 CTGCCTCACAATAACCGCTT 58.547 50.000 0.00 0.00 0.00 4.68
2397 3285 1.131126 CTGCCTCACAATAACCGCTTG 59.869 52.381 0.00 0.00 0.00 4.01
2398 3286 0.179163 GCCTCACAATAACCGCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
2399 3287 1.453155 CCTCACAATAACCGCTTGCT 58.547 50.000 0.00 0.00 0.00 3.91
2400 3288 1.131126 CCTCACAATAACCGCTTGCTG 59.869 52.381 0.00 0.00 0.00 4.41
2401 3289 1.806542 CTCACAATAACCGCTTGCTGT 59.193 47.619 0.00 0.00 0.00 4.40
2402 3290 3.000041 CTCACAATAACCGCTTGCTGTA 59.000 45.455 0.00 0.00 0.00 2.74
2403 3291 3.403968 TCACAATAACCGCTTGCTGTAA 58.596 40.909 0.00 0.00 0.00 2.41
2404 3292 3.815962 TCACAATAACCGCTTGCTGTAAA 59.184 39.130 0.00 0.00 0.00 2.01
2405 3293 4.083537 TCACAATAACCGCTTGCTGTAAAG 60.084 41.667 0.00 0.00 0.00 1.85
2410 3298 4.876652 GCTTGCTGTAAAGCCTGC 57.123 55.556 1.45 2.89 45.60 4.85
2411 3299 1.959085 GCTTGCTGTAAAGCCTGCA 59.041 52.632 12.58 0.00 45.60 4.41
2412 3300 0.529378 GCTTGCTGTAAAGCCTGCAT 59.471 50.000 12.58 0.00 45.60 3.96
2413 3301 1.067354 GCTTGCTGTAAAGCCTGCATT 60.067 47.619 12.58 0.00 45.60 3.56
2414 3302 2.164219 GCTTGCTGTAAAGCCTGCATTA 59.836 45.455 12.58 0.00 45.60 1.90
2415 3303 3.181483 GCTTGCTGTAAAGCCTGCATTAT 60.181 43.478 12.58 0.00 45.60 1.28
2416 3304 4.678840 GCTTGCTGTAAAGCCTGCATTATT 60.679 41.667 12.58 0.00 45.60 1.40
2417 3305 4.374843 TGCTGTAAAGCCTGCATTATTG 57.625 40.909 1.45 0.00 34.83 1.90
2427 3315 3.684693 GCATTATTGCCGGCCATTT 57.315 47.368 26.77 6.91 43.38 2.32
2428 3316 1.952193 GCATTATTGCCGGCCATTTT 58.048 45.000 26.77 6.52 43.38 1.82
2429 3317 3.104843 GCATTATTGCCGGCCATTTTA 57.895 42.857 26.77 8.02 43.38 1.52
2430 3318 3.663025 GCATTATTGCCGGCCATTTTAT 58.337 40.909 26.77 10.05 43.38 1.40
2431 3319 3.432933 GCATTATTGCCGGCCATTTTATG 59.567 43.478 26.77 20.99 43.38 1.90
2432 3320 4.630111 CATTATTGCCGGCCATTTTATGT 58.370 39.130 26.77 0.00 0.00 2.29
2433 3321 5.777802 CATTATTGCCGGCCATTTTATGTA 58.222 37.500 26.77 0.00 0.00 2.29
2434 3322 5.854010 TTATTGCCGGCCATTTTATGTAA 57.146 34.783 26.77 7.57 0.00 2.41
2435 3323 4.744795 ATTGCCGGCCATTTTATGTAAA 57.255 36.364 26.77 6.96 0.00 2.01
2436 3324 3.791973 TGCCGGCCATTTTATGTAAAG 57.208 42.857 26.77 0.00 0.00 1.85
2437 3325 3.357203 TGCCGGCCATTTTATGTAAAGA 58.643 40.909 26.77 0.00 0.00 2.52
2438 3326 3.380004 TGCCGGCCATTTTATGTAAAGAG 59.620 43.478 26.77 0.00 0.00 2.85
2439 3327 3.380320 GCCGGCCATTTTATGTAAAGAGT 59.620 43.478 18.11 0.00 0.00 3.24
2440 3328 4.497507 GCCGGCCATTTTATGTAAAGAGTC 60.498 45.833 18.11 0.00 0.00 3.36
2441 3329 4.638421 CCGGCCATTTTATGTAAAGAGTCA 59.362 41.667 2.24 0.00 0.00 3.41
2442 3330 5.299279 CCGGCCATTTTATGTAAAGAGTCAT 59.701 40.000 2.24 0.00 0.00 3.06
2443 3331 6.201517 CGGCCATTTTATGTAAAGAGTCATG 58.798 40.000 2.24 0.00 0.00 3.07
2444 3332 6.183360 CGGCCATTTTATGTAAAGAGTCATGT 60.183 38.462 2.24 0.00 0.00 3.21
2445 3333 7.011950 CGGCCATTTTATGTAAAGAGTCATGTA 59.988 37.037 2.24 0.00 0.00 2.29
2446 3334 8.129211 GGCCATTTTATGTAAAGAGTCATGTAC 58.871 37.037 0.00 0.00 0.00 2.90
2447 3335 7.850982 GCCATTTTATGTAAAGAGTCATGTACG 59.149 37.037 0.00 0.00 0.00 3.67
2448 3336 8.879759 CCATTTTATGTAAAGAGTCATGTACGT 58.120 33.333 0.00 0.00 0.00 3.57
2449 3337 9.901724 CATTTTATGTAAAGAGTCATGTACGTC 57.098 33.333 0.00 0.00 0.00 4.34
2450 3338 8.470040 TTTTATGTAAAGAGTCATGTACGTCC 57.530 34.615 0.00 0.00 0.00 4.79
2451 3339 4.087510 TGTAAAGAGTCATGTACGTCCG 57.912 45.455 0.00 0.00 0.00 4.79
2452 3340 3.752747 TGTAAAGAGTCATGTACGTCCGA 59.247 43.478 0.00 0.00 0.00 4.55
2453 3341 3.928727 AAAGAGTCATGTACGTCCGAA 57.071 42.857 0.00 0.00 0.00 4.30
2454 3342 2.915738 AGAGTCATGTACGTCCGAAC 57.084 50.000 0.00 0.00 0.00 3.95
2455 3343 1.471684 AGAGTCATGTACGTCCGAACC 59.528 52.381 0.00 0.00 0.00 3.62
2456 3344 0.529378 AGTCATGTACGTCCGAACCC 59.471 55.000 0.00 0.00 0.00 4.11
2457 3345 0.529378 GTCATGTACGTCCGAACCCT 59.471 55.000 0.00 0.00 0.00 4.34
2458 3346 0.813184 TCATGTACGTCCGAACCCTC 59.187 55.000 0.00 0.00 0.00 4.30
2459 3347 0.528924 CATGTACGTCCGAACCCTCA 59.471 55.000 0.00 0.00 0.00 3.86
2460 3348 0.529378 ATGTACGTCCGAACCCTCAC 59.471 55.000 0.00 0.00 0.00 3.51
2461 3349 1.154150 GTACGTCCGAACCCTCACG 60.154 63.158 0.00 0.00 38.24 4.35
2462 3350 1.302431 TACGTCCGAACCCTCACGA 60.302 57.895 0.00 0.00 36.14 4.35
2463 3351 0.677731 TACGTCCGAACCCTCACGAT 60.678 55.000 0.00 0.00 36.14 3.73
2464 3352 1.214589 CGTCCGAACCCTCACGATT 59.785 57.895 0.00 0.00 34.06 3.34
2465 3353 0.389426 CGTCCGAACCCTCACGATTT 60.389 55.000 0.00 0.00 34.06 2.17
2466 3354 1.135315 CGTCCGAACCCTCACGATTTA 60.135 52.381 0.00 0.00 34.06 1.40
2467 3355 2.537401 GTCCGAACCCTCACGATTTAG 58.463 52.381 0.00 0.00 0.00 1.85
2468 3356 2.165030 GTCCGAACCCTCACGATTTAGA 59.835 50.000 0.00 0.00 0.00 2.10
2469 3357 2.827322 TCCGAACCCTCACGATTTAGAA 59.173 45.455 0.00 0.00 0.00 2.10
2470 3358 3.258872 TCCGAACCCTCACGATTTAGAAA 59.741 43.478 0.00 0.00 0.00 2.52
2471 3359 3.617263 CCGAACCCTCACGATTTAGAAAG 59.383 47.826 0.00 0.00 0.00 2.62
2472 3360 4.243270 CGAACCCTCACGATTTAGAAAGT 58.757 43.478 0.00 0.00 0.00 2.66
2473 3361 4.326548 CGAACCCTCACGATTTAGAAAGTC 59.673 45.833 0.00 0.00 0.00 3.01
2474 3362 5.480205 GAACCCTCACGATTTAGAAAGTCT 58.520 41.667 0.00 0.00 0.00 3.24
2475 3363 4.822026 ACCCTCACGATTTAGAAAGTCTG 58.178 43.478 0.00 0.00 0.00 3.51
2476 3364 4.527038 ACCCTCACGATTTAGAAAGTCTGA 59.473 41.667 0.00 0.00 0.00 3.27
2477 3365 5.187967 ACCCTCACGATTTAGAAAGTCTGAT 59.812 40.000 0.00 0.00 0.00 2.90
2478 3366 5.521735 CCCTCACGATTTAGAAAGTCTGATG 59.478 44.000 0.00 0.00 0.00 3.07
2479 3367 5.521735 CCTCACGATTTAGAAAGTCTGATGG 59.478 44.000 0.00 0.00 0.00 3.51
2480 3368 6.280855 TCACGATTTAGAAAGTCTGATGGA 57.719 37.500 0.00 0.00 0.00 3.41
2481 3369 6.878317 TCACGATTTAGAAAGTCTGATGGAT 58.122 36.000 0.00 0.00 0.00 3.41
2482 3370 7.331026 TCACGATTTAGAAAGTCTGATGGATT 58.669 34.615 0.00 0.00 0.00 3.01
2483 3371 7.824289 TCACGATTTAGAAAGTCTGATGGATTT 59.176 33.333 0.00 0.00 0.00 2.17
2484 3372 8.454106 CACGATTTAGAAAGTCTGATGGATTTT 58.546 33.333 0.00 0.00 36.74 1.82
2485 3373 8.669243 ACGATTTAGAAAGTCTGATGGATTTTC 58.331 33.333 0.00 5.78 45.22 2.29
2486 3374 8.125448 CGATTTAGAAAGTCTGATGGATTTTCC 58.875 37.037 9.03 0.00 45.68 3.13
2487 3375 9.183368 GATTTAGAAAGTCTGATGGATTTTCCT 57.817 33.333 9.03 0.00 45.68 3.36
2492 3380 9.620259 AGAAAGTCTGATGGATTTTCCTATTAC 57.380 33.333 9.03 0.00 45.68 1.89
2493 3381 9.620259 GAAAGTCTGATGGATTTTCCTATTACT 57.380 33.333 0.00 0.00 41.67 2.24
2508 3396 9.590451 TTTCCTATTACTATAAAACTGTGGTCG 57.410 33.333 0.00 0.00 0.00 4.79
2509 3397 7.719483 TCCTATTACTATAAAACTGTGGTCGG 58.281 38.462 0.00 0.00 0.00 4.79
2510 3398 7.342799 TCCTATTACTATAAAACTGTGGTCGGT 59.657 37.037 0.00 0.00 34.21 4.69
2511 3399 8.632679 CCTATTACTATAAAACTGTGGTCGGTA 58.367 37.037 0.00 0.00 32.25 4.02
2514 3402 8.706492 TTACTATAAAACTGTGGTCGGTAATG 57.294 34.615 0.00 0.00 32.25 1.90
2515 3403 6.704310 ACTATAAAACTGTGGTCGGTAATGT 58.296 36.000 0.00 0.00 32.25 2.71
2516 3404 7.163441 ACTATAAAACTGTGGTCGGTAATGTT 58.837 34.615 0.00 0.00 32.25 2.71
2517 3405 4.561735 AAAACTGTGGTCGGTAATGTTG 57.438 40.909 0.00 0.00 32.25 3.33
2518 3406 2.178912 ACTGTGGTCGGTAATGTTGG 57.821 50.000 0.00 0.00 0.00 3.77
2519 3407 1.418637 ACTGTGGTCGGTAATGTTGGT 59.581 47.619 0.00 0.00 0.00 3.67
2520 3408 1.804151 CTGTGGTCGGTAATGTTGGTG 59.196 52.381 0.00 0.00 0.00 4.17
2521 3409 1.416772 TGTGGTCGGTAATGTTGGTGA 59.583 47.619 0.00 0.00 0.00 4.02
2522 3410 2.158798 TGTGGTCGGTAATGTTGGTGAA 60.159 45.455 0.00 0.00 0.00 3.18
2523 3411 3.078837 GTGGTCGGTAATGTTGGTGAAT 58.921 45.455 0.00 0.00 0.00 2.57
2524 3412 3.504520 GTGGTCGGTAATGTTGGTGAATT 59.495 43.478 0.00 0.00 0.00 2.17
2525 3413 4.696402 GTGGTCGGTAATGTTGGTGAATTA 59.304 41.667 0.00 0.00 0.00 1.40
2526 3414 5.181622 GTGGTCGGTAATGTTGGTGAATTAA 59.818 40.000 0.00 0.00 0.00 1.40
2527 3415 5.181622 TGGTCGGTAATGTTGGTGAATTAAC 59.818 40.000 0.00 0.00 0.00 2.01
2528 3416 5.181622 GGTCGGTAATGTTGGTGAATTAACA 59.818 40.000 0.00 0.00 40.65 2.41
2529 3417 6.311723 GTCGGTAATGTTGGTGAATTAACAG 58.688 40.000 0.00 0.00 39.83 3.16
2530 3418 6.148150 GTCGGTAATGTTGGTGAATTAACAGA 59.852 38.462 0.00 0.00 39.83 3.41
2531 3419 6.711194 TCGGTAATGTTGGTGAATTAACAGAA 59.289 34.615 0.00 0.00 39.83 3.02
2532 3420 7.228906 TCGGTAATGTTGGTGAATTAACAGAAA 59.771 33.333 0.00 0.00 39.83 2.52
2533 3421 8.026607 CGGTAATGTTGGTGAATTAACAGAAAT 58.973 33.333 0.00 0.00 39.83 2.17
2534 3422 9.139174 GGTAATGTTGGTGAATTAACAGAAATG 57.861 33.333 0.00 0.00 39.83 2.32
2535 3423 9.906660 GTAATGTTGGTGAATTAACAGAAATGA 57.093 29.630 0.00 0.00 39.83 2.57
2537 3425 9.829507 AATGTTGGTGAATTAACAGAAATGAAA 57.170 25.926 0.00 0.00 39.83 2.69
2538 3426 9.829507 ATGTTGGTGAATTAACAGAAATGAAAA 57.170 25.926 0.00 0.00 39.83 2.29
2539 3427 9.829507 TGTTGGTGAATTAACAGAAATGAAAAT 57.170 25.926 0.00 0.00 33.29 1.82
2551 3439 8.884124 ACAGAAATGAAAATAGAGGGATTTGA 57.116 30.769 0.00 0.00 0.00 2.69
2552 3440 9.312904 ACAGAAATGAAAATAGAGGGATTTGAA 57.687 29.630 0.00 0.00 0.00 2.69
2553 3441 9.578439 CAGAAATGAAAATAGAGGGATTTGAAC 57.422 33.333 0.00 0.00 0.00 3.18
2554 3442 8.753133 AGAAATGAAAATAGAGGGATTTGAACC 58.247 33.333 0.00 0.00 0.00 3.62
2562 3450 2.793288 GGGATTTGAACCCTCGGTAA 57.207 50.000 0.00 0.00 43.65 2.85
2563 3451 3.076079 GGGATTTGAACCCTCGGTAAA 57.924 47.619 0.00 0.00 43.65 2.01
2564 3452 2.751259 GGGATTTGAACCCTCGGTAAAC 59.249 50.000 0.00 0.00 43.65 2.01
2565 3453 3.414269 GGATTTGAACCCTCGGTAAACA 58.586 45.455 0.00 0.00 33.12 2.83
2566 3454 3.822167 GGATTTGAACCCTCGGTAAACAA 59.178 43.478 0.00 0.00 33.12 2.83
2567 3455 4.278919 GGATTTGAACCCTCGGTAAACAAA 59.721 41.667 10.71 10.71 37.55 2.83
2568 3456 5.221283 GGATTTGAACCCTCGGTAAACAAAA 60.221 40.000 11.69 0.00 37.14 2.44
2569 3457 4.904253 TTGAACCCTCGGTAAACAAAAG 57.096 40.909 0.00 0.00 33.12 2.27
2570 3458 2.619646 TGAACCCTCGGTAAACAAAAGC 59.380 45.455 0.00 0.00 33.12 3.51
2571 3459 1.612676 ACCCTCGGTAAACAAAAGCC 58.387 50.000 0.00 0.00 32.11 4.35
2572 3460 1.144298 ACCCTCGGTAAACAAAAGCCT 59.856 47.619 0.00 0.00 32.11 4.58
2573 3461 2.372837 ACCCTCGGTAAACAAAAGCCTA 59.627 45.455 0.00 0.00 32.11 3.93
2574 3462 2.745821 CCCTCGGTAAACAAAAGCCTAC 59.254 50.000 0.00 0.00 0.00 3.18
2575 3463 3.404899 CCTCGGTAAACAAAAGCCTACA 58.595 45.455 0.00 0.00 0.00 2.74
2576 3464 4.007659 CCTCGGTAAACAAAAGCCTACAT 58.992 43.478 0.00 0.00 0.00 2.29
2577 3465 5.180271 CCTCGGTAAACAAAAGCCTACATA 58.820 41.667 0.00 0.00 0.00 2.29
2578 3466 5.293569 CCTCGGTAAACAAAAGCCTACATAG 59.706 44.000 0.00 0.00 0.00 2.23
2579 3467 4.632688 TCGGTAAACAAAAGCCTACATAGC 59.367 41.667 0.00 0.00 0.00 2.97
2580 3468 4.393680 CGGTAAACAAAAGCCTACATAGCA 59.606 41.667 0.00 0.00 0.00 3.49
2581 3469 5.447279 CGGTAAACAAAAGCCTACATAGCAG 60.447 44.000 0.00 0.00 0.00 4.24
2582 3470 5.414765 GGTAAACAAAAGCCTACATAGCAGT 59.585 40.000 0.00 0.00 0.00 4.40
2583 3471 6.072119 GGTAAACAAAAGCCTACATAGCAGTT 60.072 38.462 0.00 0.00 0.00 3.16
2584 3472 5.629079 AACAAAAGCCTACATAGCAGTTC 57.371 39.130 0.00 0.00 0.00 3.01
2585 3473 4.010349 ACAAAAGCCTACATAGCAGTTCC 58.990 43.478 0.00 0.00 0.00 3.62
2586 3474 4.009675 CAAAAGCCTACATAGCAGTTCCA 58.990 43.478 0.00 0.00 0.00 3.53
2587 3475 3.550437 AAGCCTACATAGCAGTTCCAG 57.450 47.619 0.00 0.00 0.00 3.86
2588 3476 2.472029 AGCCTACATAGCAGTTCCAGT 58.528 47.619 0.00 0.00 0.00 4.00
2589 3477 2.169352 AGCCTACATAGCAGTTCCAGTG 59.831 50.000 0.00 0.00 0.00 3.66
2590 3478 2.555199 CCTACATAGCAGTTCCAGTGC 58.445 52.381 0.00 0.00 44.65 4.40
2596 3484 2.785868 GCAGTTCCAGTGCTATGGG 58.214 57.895 7.76 0.00 41.22 4.00
2597 3485 0.035056 GCAGTTCCAGTGCTATGGGT 60.035 55.000 7.76 0.00 41.22 4.51
2598 3486 1.614317 GCAGTTCCAGTGCTATGGGTT 60.614 52.381 7.76 0.00 41.22 4.11
2599 3487 2.086869 CAGTTCCAGTGCTATGGGTTG 58.913 52.381 7.76 1.80 41.01 3.77
2600 3488 1.985159 AGTTCCAGTGCTATGGGTTGA 59.015 47.619 7.76 0.00 41.01 3.18
2601 3489 2.375174 AGTTCCAGTGCTATGGGTTGAA 59.625 45.455 7.76 0.00 41.01 2.69
2602 3490 2.488153 GTTCCAGTGCTATGGGTTGAAC 59.512 50.000 7.76 0.00 41.01 3.18
2603 3491 1.004277 TCCAGTGCTATGGGTTGAACC 59.996 52.381 5.62 5.62 41.01 3.62
2604 3492 1.271871 CCAGTGCTATGGGTTGAACCA 60.272 52.381 17.27 0.07 46.24 3.67
2605 3493 1.812571 CAGTGCTATGGGTTGAACCAC 59.187 52.381 17.27 4.40 44.72 4.16
2606 3494 1.705186 AGTGCTATGGGTTGAACCACT 59.295 47.619 17.27 6.82 44.72 4.00
2607 3495 2.084546 GTGCTATGGGTTGAACCACTC 58.915 52.381 17.27 0.00 44.72 3.51
2608 3496 1.338674 TGCTATGGGTTGAACCACTCG 60.339 52.381 17.27 2.80 44.72 4.18
2609 3497 2.012051 GCTATGGGTTGAACCACTCGG 61.012 57.143 17.27 3.23 44.72 4.63
2610 3498 0.035820 TATGGGTTGAACCACTCGGC 60.036 55.000 17.27 0.00 44.72 5.54
2611 3499 2.671963 GGGTTGAACCACTCGGCC 60.672 66.667 17.27 0.00 41.02 6.13
2612 3500 2.112297 GGTTGAACCACTCGGCCA 59.888 61.111 9.98 0.00 38.42 5.36
2613 3501 1.303317 GGTTGAACCACTCGGCCAT 60.303 57.895 9.98 0.00 38.42 4.40
2614 3502 1.305930 GGTTGAACCACTCGGCCATC 61.306 60.000 9.98 0.00 38.42 3.51
2615 3503 0.321653 GTTGAACCACTCGGCCATCT 60.322 55.000 2.24 0.00 34.57 2.90
2616 3504 0.036388 TTGAACCACTCGGCCATCTC 60.036 55.000 2.24 0.00 34.57 2.75
2617 3505 0.904865 TGAACCACTCGGCCATCTCT 60.905 55.000 2.24 0.00 34.57 3.10
2618 3506 0.250513 GAACCACTCGGCCATCTCTT 59.749 55.000 2.24 0.00 34.57 2.85
2619 3507 0.250513 AACCACTCGGCCATCTCTTC 59.749 55.000 2.24 0.00 34.57 2.87
2620 3508 0.616111 ACCACTCGGCCATCTCTTCT 60.616 55.000 2.24 0.00 34.57 2.85
2621 3509 1.342076 ACCACTCGGCCATCTCTTCTA 60.342 52.381 2.24 0.00 34.57 2.10
2622 3510 1.067821 CCACTCGGCCATCTCTTCTAC 59.932 57.143 2.24 0.00 0.00 2.59
2623 3511 1.751351 CACTCGGCCATCTCTTCTACA 59.249 52.381 2.24 0.00 0.00 2.74
2624 3512 2.363680 CACTCGGCCATCTCTTCTACAT 59.636 50.000 2.24 0.00 0.00 2.29
2625 3513 3.570125 CACTCGGCCATCTCTTCTACATA 59.430 47.826 2.24 0.00 0.00 2.29
2626 3514 4.038042 CACTCGGCCATCTCTTCTACATAA 59.962 45.833 2.24 0.00 0.00 1.90
2627 3515 4.835615 ACTCGGCCATCTCTTCTACATAAT 59.164 41.667 2.24 0.00 0.00 1.28
2628 3516 5.047660 ACTCGGCCATCTCTTCTACATAATC 60.048 44.000 2.24 0.00 0.00 1.75
2629 3517 5.080337 TCGGCCATCTCTTCTACATAATCT 58.920 41.667 2.24 0.00 0.00 2.40
2630 3518 5.540337 TCGGCCATCTCTTCTACATAATCTT 59.460 40.000 2.24 0.00 0.00 2.40
2631 3519 6.719829 TCGGCCATCTCTTCTACATAATCTTA 59.280 38.462 2.24 0.00 0.00 2.10
2632 3520 7.397476 TCGGCCATCTCTTCTACATAATCTTAT 59.603 37.037 2.24 0.00 0.00 1.73
2633 3521 8.037758 CGGCCATCTCTTCTACATAATCTTATT 58.962 37.037 2.24 0.00 0.00 1.40
2659 3547 6.647212 TGAACATAAACTGAGTGAATAGCG 57.353 37.500 0.00 0.00 0.00 4.26
2660 3548 6.394809 TGAACATAAACTGAGTGAATAGCGA 58.605 36.000 0.00 0.00 0.00 4.93
2661 3549 6.531594 TGAACATAAACTGAGTGAATAGCGAG 59.468 38.462 0.00 0.00 0.00 5.03
2662 3550 5.967088 ACATAAACTGAGTGAATAGCGAGT 58.033 37.500 0.00 0.00 0.00 4.18
2663 3551 6.398918 ACATAAACTGAGTGAATAGCGAGTT 58.601 36.000 0.00 0.00 0.00 3.01
2664 3552 6.874134 ACATAAACTGAGTGAATAGCGAGTTT 59.126 34.615 0.00 0.00 37.41 2.66
2665 3553 7.387948 ACATAAACTGAGTGAATAGCGAGTTTT 59.612 33.333 0.00 0.00 35.72 2.43
2666 3554 5.847670 AACTGAGTGAATAGCGAGTTTTC 57.152 39.130 0.00 0.00 0.00 2.29
2674 3562 8.359640 GAGTGAATAGCGAGTTTTCGTATCACT 61.360 40.741 18.79 18.79 46.62 3.41
2682 3570 7.786305 CGAGTTTTCGTATCACTAAAGTACA 57.214 36.000 0.00 0.00 41.84 2.90
2683 3571 7.872584 CGAGTTTTCGTATCACTAAAGTACAG 58.127 38.462 0.00 0.00 41.84 2.74
2684 3572 7.008086 CGAGTTTTCGTATCACTAAAGTACAGG 59.992 40.741 0.00 0.00 41.84 4.00
2685 3573 7.664758 AGTTTTCGTATCACTAAAGTACAGGT 58.335 34.615 0.00 0.00 0.00 4.00
2686 3574 8.796475 AGTTTTCGTATCACTAAAGTACAGGTA 58.204 33.333 0.00 0.00 0.00 3.08
2687 3575 8.854312 GTTTTCGTATCACTAAAGTACAGGTAC 58.146 37.037 1.33 1.33 36.35 3.34
2688 3576 7.686438 TTCGTATCACTAAAGTACAGGTACA 57.314 36.000 11.78 0.00 38.48 2.90
2689 3577 7.686438 TCGTATCACTAAAGTACAGGTACAA 57.314 36.000 11.78 0.00 38.48 2.41
2690 3578 7.530010 TCGTATCACTAAAGTACAGGTACAAC 58.470 38.462 11.78 0.00 38.48 3.32
2691 3579 6.749118 CGTATCACTAAAGTACAGGTACAACC 59.251 42.308 11.78 0.00 38.48 3.77
2799 3689 1.204941 CGAGGGGAACACGAGAGAAAT 59.795 52.381 0.00 0.00 34.50 2.17
2800 3690 2.735762 CGAGGGGAACACGAGAGAAATC 60.736 54.545 0.00 0.00 34.50 2.17
2801 3691 2.233922 GAGGGGAACACGAGAGAAATCA 59.766 50.000 0.00 0.00 0.00 2.57
2866 3778 8.918202 TGAACACAAAGGTAAGATACAAGATT 57.082 30.769 0.00 0.00 0.00 2.40
2892 3804 6.687081 AAGTCAACAAAGGACGATACAAAA 57.313 33.333 0.00 0.00 40.20 2.44
2942 3861 1.910580 TTGATGGGGGTCTTCTCCGC 61.911 60.000 0.00 0.00 39.30 5.54
3001 3920 3.200593 GCCGCGGTCTCTCTCGTA 61.201 66.667 28.70 0.00 0.00 3.43
3120 4040 1.978617 GGGTCGAAGGGGTACACGA 60.979 63.158 0.00 0.00 0.00 4.35
3218 4139 0.463474 GGGCTCAGCTTCTGGATGTC 60.463 60.000 0.00 0.00 32.48 3.06
3452 4402 3.309436 TTCACGTGCATCCTCGGGG 62.309 63.158 11.67 0.00 32.58 5.73
3477 4427 5.338381 GGTTCCTCTTGACACCTAATCATGA 60.338 44.000 0.00 0.00 0.00 3.07
3488 4438 8.596293 TGACACCTAATCATGAATAGCATATCA 58.404 33.333 11.71 9.28 34.82 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.061848 GATGTTGTGGGCGGTGGG 61.062 66.667 0.00 0.00 0.00 4.61
12 13 3.430862 CGATGTTGTGGGCGGTGG 61.431 66.667 0.00 0.00 0.00 4.61
13 14 3.430862 CCGATGTTGTGGGCGGTG 61.431 66.667 0.00 0.00 38.99 4.94
19 20 3.133464 ATGGCGCCGATGTTGTGG 61.133 61.111 23.90 0.00 0.00 4.17
20 21 2.100797 CATGGCGCCGATGTTGTG 59.899 61.111 23.90 7.69 0.00 3.33
21 22 3.814268 GCATGGCGCCGATGTTGT 61.814 61.111 27.99 7.44 32.94 3.32
22 23 3.511595 AGCATGGCGCCGATGTTG 61.512 61.111 27.99 19.19 44.04 3.33
23 24 3.511595 CAGCATGGCGCCGATGTT 61.512 61.111 27.99 23.22 44.04 2.71
42 43 4.947147 AAAACAGCGCCGCTCCCA 62.947 61.111 9.54 0.00 36.40 4.37
43 44 4.404654 CAAAACAGCGCCGCTCCC 62.405 66.667 9.54 0.00 36.40 4.30
44 45 4.404654 CCAAAACAGCGCCGCTCC 62.405 66.667 9.54 0.00 36.40 4.70
45 46 1.366111 TATCCAAAACAGCGCCGCTC 61.366 55.000 9.54 0.00 36.40 5.03
46 47 1.376683 TATCCAAAACAGCGCCGCT 60.377 52.632 5.39 5.39 40.77 5.52
47 48 1.226295 GTATCCAAAACAGCGCCGC 60.226 57.895 2.29 0.00 0.00 6.53
48 49 1.060308 CGTATCCAAAACAGCGCCG 59.940 57.895 2.29 0.00 0.00 6.46
49 50 1.061566 GTACGTATCCAAAACAGCGCC 59.938 52.381 2.29 0.00 0.00 6.53
50 51 1.266696 CGTACGTATCCAAAACAGCGC 60.267 52.381 7.22 0.00 0.00 5.92
51 52 1.266696 GCGTACGTATCCAAAACAGCG 60.267 52.381 17.90 0.00 0.00 5.18
52 53 1.061566 GGCGTACGTATCCAAAACAGC 59.938 52.381 17.90 0.00 0.00 4.40
53 54 2.093152 GTGGCGTACGTATCCAAAACAG 59.907 50.000 17.90 0.00 0.00 3.16
54 55 2.067766 GTGGCGTACGTATCCAAAACA 58.932 47.619 17.90 0.08 0.00 2.83
55 56 2.067766 TGTGGCGTACGTATCCAAAAC 58.932 47.619 17.90 5.03 0.00 2.43
56 57 2.452295 TGTGGCGTACGTATCCAAAA 57.548 45.000 17.90 5.20 0.00 2.44
57 58 2.272678 CATGTGGCGTACGTATCCAAA 58.727 47.619 17.90 11.28 0.00 3.28
58 59 1.929230 CATGTGGCGTACGTATCCAA 58.071 50.000 17.90 7.30 0.00 3.53
59 60 0.528901 GCATGTGGCGTACGTATCCA 60.529 55.000 17.90 12.95 0.00 3.41
60 61 2.222592 GCATGTGGCGTACGTATCC 58.777 57.895 17.90 10.27 0.00 2.59
70 71 3.902162 CTGCCGTGTTGCATGTGGC 62.902 63.158 11.55 11.55 45.91 5.01
71 72 2.256158 CTGCCGTGTTGCATGTGG 59.744 61.111 0.00 0.00 41.16 4.17
72 73 2.429571 GCTGCCGTGTTGCATGTG 60.430 61.111 0.00 0.00 41.16 3.21
73 74 3.673484 GGCTGCCGTGTTGCATGT 61.673 61.111 1.35 0.00 41.16 3.21
74 75 2.495366 ATTGGCTGCCGTGTTGCATG 62.495 55.000 14.98 0.00 41.16 4.06
75 76 0.964860 TATTGGCTGCCGTGTTGCAT 60.965 50.000 14.98 0.01 41.16 3.96
76 77 1.602041 TATTGGCTGCCGTGTTGCA 60.602 52.632 14.98 0.00 39.37 4.08
77 78 1.154035 GTATTGGCTGCCGTGTTGC 60.154 57.895 14.98 0.00 0.00 4.17
78 79 1.134487 CGTATTGGCTGCCGTGTTG 59.866 57.895 14.98 0.00 0.00 3.33
79 80 2.038269 CCGTATTGGCTGCCGTGTT 61.038 57.895 14.98 0.93 0.00 3.32
80 81 2.435938 CCGTATTGGCTGCCGTGT 60.436 61.111 14.98 4.85 0.00 4.49
81 82 2.125310 TCCGTATTGGCTGCCGTG 60.125 61.111 14.98 1.38 37.80 4.94
82 83 2.125269 GTCCGTATTGGCTGCCGT 60.125 61.111 14.98 7.93 37.80 5.68
83 84 2.895372 GGTCCGTATTGGCTGCCG 60.895 66.667 14.98 0.86 37.80 5.69
84 85 2.516225 GGGTCCGTATTGGCTGCC 60.516 66.667 12.87 12.87 37.80 4.85
85 86 1.152963 ATGGGTCCGTATTGGCTGC 60.153 57.895 0.00 0.00 37.80 5.25
86 87 0.107214 ACATGGGTCCGTATTGGCTG 60.107 55.000 0.00 0.00 37.80 4.85
87 88 1.502690 TACATGGGTCCGTATTGGCT 58.497 50.000 0.00 0.00 37.80 4.75
88 89 2.151202 CATACATGGGTCCGTATTGGC 58.849 52.381 0.00 0.00 37.80 4.52
89 90 3.485463 ACATACATGGGTCCGTATTGG 57.515 47.619 0.00 0.00 40.09 3.16
90 91 7.504924 AAATAACATACATGGGTCCGTATTG 57.495 36.000 0.00 0.00 0.00 1.90
91 92 8.528044 AAAAATAACATACATGGGTCCGTATT 57.472 30.769 0.00 0.00 0.00 1.89
246 247 8.803799 CGGATTTTTCATTTAAGGGATAAAACG 58.196 33.333 0.00 0.00 37.06 3.60
255 256 9.807649 ATCTTCAATCGGATTTTTCATTTAAGG 57.192 29.630 0.00 0.00 0.00 2.69
502 508 5.874261 GCAATTTTAGTTTATGGTGCATGGT 59.126 36.000 0.00 0.00 0.00 3.55
579 587 4.365514 TGGCAATTCCAGTACTTTGAGA 57.634 40.909 8.83 0.00 40.72 3.27
722 733 5.191727 AGACCCCATGTTGATATGTTTCA 57.808 39.130 0.00 0.00 0.00 2.69
859 873 7.445096 TCATTTTGCCACGTATGAATAGATGAT 59.555 33.333 0.00 0.00 0.00 2.45
889 903 2.591753 CCCACACGCCTCCATCAT 59.408 61.111 0.00 0.00 0.00 2.45
953 967 2.967201 TCAGAACTCAGGGACCGTAAAA 59.033 45.455 0.00 0.00 0.00 1.52
957 971 0.898320 CATCAGAACTCAGGGACCGT 59.102 55.000 0.00 0.00 0.00 4.83
958 972 0.460987 GCATCAGAACTCAGGGACCG 60.461 60.000 0.00 0.00 0.00 4.79
959 973 0.908198 AGCATCAGAACTCAGGGACC 59.092 55.000 0.00 0.00 0.00 4.46
960 974 4.557695 CGTATAGCATCAGAACTCAGGGAC 60.558 50.000 0.00 0.00 0.00 4.46
961 975 3.570125 CGTATAGCATCAGAACTCAGGGA 59.430 47.826 0.00 0.00 0.00 4.20
962 976 3.305676 CCGTATAGCATCAGAACTCAGGG 60.306 52.174 0.00 0.00 0.00 4.45
963 977 3.858877 GCCGTATAGCATCAGAACTCAGG 60.859 52.174 0.00 0.00 0.00 3.86
964 978 3.312828 GCCGTATAGCATCAGAACTCAG 58.687 50.000 0.00 0.00 0.00 3.35
965 979 2.035961 GGCCGTATAGCATCAGAACTCA 59.964 50.000 0.00 0.00 0.00 3.41
966 980 2.678324 GGCCGTATAGCATCAGAACTC 58.322 52.381 0.00 0.00 0.00 3.01
967 981 1.000163 CGGCCGTATAGCATCAGAACT 60.000 52.381 19.50 0.00 0.00 3.01
968 982 1.419374 CGGCCGTATAGCATCAGAAC 58.581 55.000 19.50 0.00 0.00 3.01
969 983 0.317160 CCGGCCGTATAGCATCAGAA 59.683 55.000 26.12 0.00 0.00 3.02
970 984 0.538746 TCCGGCCGTATAGCATCAGA 60.539 55.000 26.12 6.87 0.00 3.27
971 985 0.388649 GTCCGGCCGTATAGCATCAG 60.389 60.000 26.12 4.17 0.00 2.90
972 986 1.110518 TGTCCGGCCGTATAGCATCA 61.111 55.000 26.12 7.94 0.00 3.07
973 987 0.666577 GTGTCCGGCCGTATAGCATC 60.667 60.000 26.12 5.38 0.00 3.91
974 988 1.366366 GTGTCCGGCCGTATAGCAT 59.634 57.895 26.12 0.00 0.00 3.79
988 1002 4.184079 ACCGATTACTAGTGTTGGTGTC 57.816 45.455 16.97 1.38 0.00 3.67
996 1010 3.520290 TGCTGGAACCGATTACTAGTG 57.480 47.619 5.39 0.00 0.00 2.74
1023 1037 0.042708 CTCGATGCTTGTATGCACGC 60.043 55.000 5.29 5.29 46.33 5.34
1056 1070 6.147985 TCGAGACATACCTTCGATTGATCTAG 59.852 42.308 0.00 0.00 0.00 2.43
1058 1072 4.822350 TCGAGACATACCTTCGATTGATCT 59.178 41.667 0.00 0.00 0.00 2.75
1059 1073 4.912766 GTCGAGACATACCTTCGATTGATC 59.087 45.833 0.00 0.00 35.28 2.92
1202 2082 2.472049 GAAGCGCGTGAAGTCAGC 59.528 61.111 8.43 0.00 0.00 4.26
1203 2083 1.664649 TGGAAGCGCGTGAAGTCAG 60.665 57.895 8.43 0.00 0.00 3.51
1204 2084 1.954146 GTGGAAGCGCGTGAAGTCA 60.954 57.895 8.43 0.00 0.00 3.41
1272 2152 4.719369 ACGGCAGGAACGAGCGAC 62.719 66.667 0.00 0.00 35.23 5.19
1277 2157 3.876589 GAAGCCACGGCAGGAACGA 62.877 63.158 11.35 0.00 44.88 3.85
1288 2168 4.077188 GTGCGCGTCAGAAGCCAC 62.077 66.667 8.43 11.89 0.00 5.01
1336 2216 4.802051 TGCAGAATGAGGCGGCCC 62.802 66.667 17.02 8.02 39.69 5.80
1338 2218 2.437359 ACTGCAGAATGAGGCGGC 60.437 61.111 23.35 0.00 39.69 6.53
1354 2234 1.737008 GGAGAAGTTGACGGCGGAC 60.737 63.158 13.24 7.05 0.00 4.79
1355 2235 2.654877 GGAGAAGTTGACGGCGGA 59.345 61.111 13.24 0.00 0.00 5.54
1381 2261 4.424566 TACTTCGACCGTGGCGCC 62.425 66.667 22.73 22.73 0.00 6.53
1382 2262 3.177249 GTACTTCGACCGTGGCGC 61.177 66.667 0.00 0.00 0.00 6.53
1383 2263 1.800315 CTGTACTTCGACCGTGGCG 60.800 63.158 0.00 0.00 0.00 5.69
1395 2275 3.666345 AGATCCCCTCGTAACTGTACT 57.334 47.619 0.00 0.00 0.00 2.73
1400 2280 2.688958 CGAGAAAGATCCCCTCGTAACT 59.311 50.000 16.26 0.00 43.20 2.24
1411 2291 2.517450 CGGCCGCACGAGAAAGATC 61.517 63.158 14.67 0.00 35.47 2.75
1412 2292 2.509336 CGGCCGCACGAGAAAGAT 60.509 61.111 14.67 0.00 35.47 2.40
1446 2326 0.951040 GTTGGTCAGCCAGTTCCTCG 60.951 60.000 0.00 0.00 46.91 4.63
1480 2360 2.743928 GTGGTCAAGAGCCAGGCG 60.744 66.667 5.55 0.00 36.57 5.52
1513 2393 2.185310 CTCCGGTGAAAGGGTGGAGG 62.185 65.000 0.00 0.00 42.00 4.30
1550 2433 0.249447 CGCCGCTCATCTTGGTATGA 60.249 55.000 0.00 0.00 34.72 2.15
1637 2521 2.555547 GCTTGCCGGTTGAACAGCT 61.556 57.895 1.90 0.00 0.00 4.24
1640 2524 2.250939 CGAGCTTGCCGGTTGAACA 61.251 57.895 1.90 0.00 0.00 3.18
1642 2526 1.098712 AAACGAGCTTGCCGGTTGAA 61.099 50.000 1.90 0.00 35.42 2.69
1702 2586 3.297830 TCGAGCTTCGTTTTCATCAGA 57.702 42.857 0.00 0.00 41.35 3.27
1724 2608 7.551262 ACTGTAGTTCGTGATATTTGGCAAATA 59.449 33.333 29.07 29.07 37.71 1.40
1740 2624 3.380479 TTCCACTTCCACTGTAGTTCG 57.620 47.619 0.00 0.00 0.00 3.95
1741 2625 4.691216 GTGATTCCACTTCCACTGTAGTTC 59.309 45.833 0.00 0.00 40.10 3.01
1755 2639 1.594862 GATACAGCGCAGTGATTCCAC 59.405 52.381 16.48 0.00 43.50 4.02
1756 2640 1.206849 TGATACAGCGCAGTGATTCCA 59.793 47.619 16.48 3.40 0.00 3.53
1757 2641 1.594862 GTGATACAGCGCAGTGATTCC 59.405 52.381 16.48 0.83 0.00 3.01
1758 2642 2.270923 TGTGATACAGCGCAGTGATTC 58.729 47.619 16.48 10.08 0.00 2.52
1759 2643 2.385013 TGTGATACAGCGCAGTGATT 57.615 45.000 16.48 0.00 0.00 2.57
1760 2644 2.002586 GTTGTGATACAGCGCAGTGAT 58.997 47.619 16.48 5.24 0.00 3.06
1761 2645 1.270041 TGTTGTGATACAGCGCAGTGA 60.270 47.619 16.48 0.14 31.54 3.41
1762 2646 1.127397 CTGTTGTGATACAGCGCAGTG 59.873 52.381 16.48 5.27 39.12 3.66
1769 2653 5.163784 CCAAGATCTTGCTGTTGTGATACAG 60.164 44.000 27.01 7.00 46.55 2.74
1781 2665 0.403271 AGGCACACCAAGATCTTGCT 59.597 50.000 27.01 13.39 39.16 3.91
1808 2696 2.393768 GCGTGAGGATGCACCAGTG 61.394 63.158 7.86 0.00 42.04 3.66
1825 2713 3.112709 GCACCGTCGTCTTCCAGC 61.113 66.667 0.00 0.00 0.00 4.85
1828 2716 2.737376 GTGGCACCGTCGTCTTCC 60.737 66.667 6.29 0.00 0.00 3.46
1928 2816 1.599542 GACTGTGACCAACAACAGCTC 59.400 52.381 2.83 0.00 38.67 4.09
1938 2826 1.337728 CGTGCAATAGGACTGTGACCA 60.338 52.381 0.00 0.00 33.37 4.02
1952 2840 0.660488 CTTGTGTGGCTAACGTGCAA 59.340 50.000 0.00 0.00 34.04 4.08
1954 2842 0.512952 CTCTTGTGTGGCTAACGTGC 59.487 55.000 0.00 0.00 0.00 5.34
1999 2887 2.100631 GTCTTCGTCCCACGCATGG 61.101 63.158 0.00 0.00 46.81 3.66
2011 2899 3.189080 TCAACCATTGCATCTTGTCTTCG 59.811 43.478 0.00 0.00 0.00 3.79
2026 2914 1.224592 GCCATCCCTCGTCAACCAT 59.775 57.895 0.00 0.00 0.00 3.55
2156 3044 3.368822 CACGTCCAGGAACGGGTA 58.631 61.111 13.78 0.00 46.16 3.69
2159 3047 1.425412 CTAAACACGTCCAGGAACGG 58.575 55.000 13.78 7.14 46.72 4.44
2162 3050 2.964464 TGTACCTAAACACGTCCAGGAA 59.036 45.455 7.96 0.00 32.25 3.36
2163 3051 2.596346 TGTACCTAAACACGTCCAGGA 58.404 47.619 7.96 0.00 32.25 3.86
2164 3052 3.062042 GTTGTACCTAAACACGTCCAGG 58.938 50.000 0.00 0.00 0.00 4.45
2165 3053 3.986277 AGTTGTACCTAAACACGTCCAG 58.014 45.455 0.00 0.00 0.00 3.86
2166 3054 4.405116 AAGTTGTACCTAAACACGTCCA 57.595 40.909 0.00 0.00 0.00 4.02
2167 3055 6.646240 TCATAAAGTTGTACCTAAACACGTCC 59.354 38.462 0.00 0.00 0.00 4.79
2168 3056 7.642071 TCATAAAGTTGTACCTAAACACGTC 57.358 36.000 0.00 0.00 0.00 4.34
2169 3057 7.495279 TGTTCATAAAGTTGTACCTAAACACGT 59.505 33.333 0.00 0.00 0.00 4.49
2170 3058 7.853524 TGTTCATAAAGTTGTACCTAAACACG 58.146 34.615 0.00 0.00 0.00 4.49
2176 3064 7.335924 GCCTCATTGTTCATAAAGTTGTACCTA 59.664 37.037 0.00 0.00 0.00 3.08
2185 3073 3.313526 CCTCGGCCTCATTGTTCATAAAG 59.686 47.826 0.00 0.00 0.00 1.85
2191 3079 3.502572 GCCTCGGCCTCATTGTTC 58.497 61.111 0.00 0.00 34.56 3.18
2204 3092 3.882025 CTCAACGAGCTTGGCCTC 58.118 61.111 3.32 0.00 0.00 4.70
2216 3104 1.909700 TCCCAATGAAGGTGCTCAAC 58.090 50.000 0.00 0.00 0.00 3.18
2217 3105 2.673775 TTCCCAATGAAGGTGCTCAA 57.326 45.000 0.00 0.00 0.00 3.02
2229 3117 2.442643 CGGCAGGCCATTCCCAAT 60.443 61.111 5.01 0.00 35.37 3.16
2230 3118 3.656280 TCGGCAGGCCATTCCCAA 61.656 61.111 5.01 0.00 35.37 4.12
2232 3120 3.808692 TATTGTCGGCAGGCCATTCCC 62.809 57.143 5.01 0.00 35.37 3.97
2235 3123 0.034574 TGTATTGTCGGCAGGCCATT 60.035 50.000 5.01 0.00 35.37 3.16
2245 3133 4.874534 ACGTCCCGTGTATTGTCG 57.125 55.556 0.00 0.00 39.18 4.35
2255 3143 2.181021 GAGCCAGTACACGTCCCG 59.819 66.667 0.00 0.00 0.00 5.14
2272 3160 0.604578 CAATGGTTGGTGGAAGCTGG 59.395 55.000 0.00 0.00 32.90 4.85
2274 3162 0.178953 AGCAATGGTTGGTGGAAGCT 60.179 50.000 0.00 0.00 40.37 3.74
2277 3165 0.187117 TGGAGCAATGGTTGGTGGAA 59.813 50.000 0.00 0.00 42.23 3.53
2280 3168 2.299582 TGAATTGGAGCAATGGTTGGTG 59.700 45.455 0.00 0.00 42.23 4.17
2327 3215 0.323629 TCCCGTGGATGTGGTTTCTC 59.676 55.000 0.00 0.00 0.00 2.87
2329 3217 2.702592 TATCCCGTGGATGTGGTTTC 57.297 50.000 13.77 0.00 43.06 2.78
2334 3222 4.981806 ACAAAATTATCCCGTGGATGTG 57.018 40.909 13.77 7.70 43.06 3.21
2335 3223 5.009610 GCATACAAAATTATCCCGTGGATGT 59.990 40.000 13.77 7.46 43.06 3.06
2350 3238 8.250472 CGTCCAACGTATCTTTTGCATACAAAA 61.250 37.037 3.85 3.85 43.40 2.44
2357 3245 1.195900 GCGTCCAACGTATCTTTTGCA 59.804 47.619 1.14 0.00 44.73 4.08
2360 3248 1.463444 GCAGCGTCCAACGTATCTTTT 59.537 47.619 1.14 0.00 44.73 2.27
2369 3257 1.237285 ATTGTGAGGCAGCGTCCAAC 61.237 55.000 12.54 5.72 0.00 3.77
2373 3261 0.727398 GGTTATTGTGAGGCAGCGTC 59.273 55.000 8.23 8.23 0.00 5.19
2374 3262 1.019278 CGGTTATTGTGAGGCAGCGT 61.019 55.000 0.00 0.00 0.00 5.07
2375 3263 1.715585 CGGTTATTGTGAGGCAGCG 59.284 57.895 0.00 0.00 0.00 5.18
2376 3264 1.026718 AGCGGTTATTGTGAGGCAGC 61.027 55.000 0.00 0.00 0.00 5.25
2377 3265 1.131126 CAAGCGGTTATTGTGAGGCAG 59.869 52.381 0.00 0.00 0.00 4.85
2378 3266 1.164411 CAAGCGGTTATTGTGAGGCA 58.836 50.000 0.00 0.00 0.00 4.75
2379 3267 0.179163 GCAAGCGGTTATTGTGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
2380 3268 1.131126 CAGCAAGCGGTTATTGTGAGG 59.869 52.381 0.00 0.00 0.00 3.86
2381 3269 1.806542 ACAGCAAGCGGTTATTGTGAG 59.193 47.619 13.14 0.00 0.00 3.51
2382 3270 1.890876 ACAGCAAGCGGTTATTGTGA 58.109 45.000 13.14 0.00 0.00 3.58
2383 3271 3.822594 TTACAGCAAGCGGTTATTGTG 57.177 42.857 19.90 9.83 0.00 3.33
2384 3272 3.365969 GCTTTACAGCAAGCGGTTATTGT 60.366 43.478 16.69 16.69 46.49 2.71
2385 3273 3.171277 GCTTTACAGCAAGCGGTTATTG 58.829 45.455 0.00 4.10 46.49 1.90
2386 3274 3.487563 GCTTTACAGCAAGCGGTTATT 57.512 42.857 0.00 0.00 46.49 1.40
2407 3295 9.812209 TACATAAAATGGCCGGCAATAATGCAG 62.812 40.741 30.85 13.99 44.14 4.41
2408 3296 7.423799 ACATAAAATGGCCGGCAATAATGCA 62.424 40.000 30.85 15.69 44.14 3.96
2409 3297 5.037366 ACATAAAATGGCCGGCAATAATGC 61.037 41.667 30.85 9.47 42.68 3.56
2410 3298 4.630111 ACATAAAATGGCCGGCAATAATG 58.370 39.130 30.85 25.81 33.60 1.90
2411 3299 4.953940 ACATAAAATGGCCGGCAATAAT 57.046 36.364 30.85 17.25 33.60 1.28
2412 3300 5.854010 TTACATAAAATGGCCGGCAATAA 57.146 34.783 30.85 12.41 33.60 1.40
2413 3301 5.594725 TCTTTACATAAAATGGCCGGCAATA 59.405 36.000 30.85 14.69 33.60 1.90
2414 3302 4.404073 TCTTTACATAAAATGGCCGGCAAT 59.596 37.500 30.85 22.12 33.60 3.56
2415 3303 3.764434 TCTTTACATAAAATGGCCGGCAA 59.236 39.130 30.85 20.37 33.60 4.52
2416 3304 3.357203 TCTTTACATAAAATGGCCGGCA 58.643 40.909 30.85 15.30 33.60 5.69
2417 3305 3.380320 ACTCTTTACATAAAATGGCCGGC 59.620 43.478 21.18 21.18 33.60 6.13
2418 3306 4.638421 TGACTCTTTACATAAAATGGCCGG 59.362 41.667 0.00 0.00 33.60 6.13
2419 3307 5.811399 TGACTCTTTACATAAAATGGCCG 57.189 39.130 0.00 0.00 33.60 6.13
2420 3308 7.100458 ACATGACTCTTTACATAAAATGGCC 57.900 36.000 0.00 0.00 33.60 5.36
2421 3309 7.850982 CGTACATGACTCTTTACATAAAATGGC 59.149 37.037 0.00 0.00 33.60 4.40
2422 3310 8.879759 ACGTACATGACTCTTTACATAAAATGG 58.120 33.333 0.00 0.00 33.60 3.16
2423 3311 9.901724 GACGTACATGACTCTTTACATAAAATG 57.098 33.333 0.00 0.00 0.00 2.32
2424 3312 9.095065 GGACGTACATGACTCTTTACATAAAAT 57.905 33.333 0.00 0.00 0.00 1.82
2425 3313 7.274033 CGGACGTACATGACTCTTTACATAAAA 59.726 37.037 0.00 0.00 0.00 1.52
2426 3314 6.748658 CGGACGTACATGACTCTTTACATAAA 59.251 38.462 0.00 0.00 0.00 1.40
2427 3315 6.093909 TCGGACGTACATGACTCTTTACATAA 59.906 38.462 0.00 0.00 0.00 1.90
2428 3316 5.585844 TCGGACGTACATGACTCTTTACATA 59.414 40.000 0.00 0.00 0.00 2.29
2429 3317 4.397103 TCGGACGTACATGACTCTTTACAT 59.603 41.667 0.00 0.00 0.00 2.29
2430 3318 3.752747 TCGGACGTACATGACTCTTTACA 59.247 43.478 0.00 0.00 0.00 2.41
2431 3319 4.346734 TCGGACGTACATGACTCTTTAC 57.653 45.455 0.00 0.00 0.00 2.01
2432 3320 4.379813 GGTTCGGACGTACATGACTCTTTA 60.380 45.833 0.00 0.00 0.00 1.85
2433 3321 3.572584 GTTCGGACGTACATGACTCTTT 58.427 45.455 0.00 0.00 0.00 2.52
2434 3322 2.094854 GGTTCGGACGTACATGACTCTT 60.095 50.000 0.00 0.00 0.00 2.85
2435 3323 1.471684 GGTTCGGACGTACATGACTCT 59.528 52.381 0.00 0.00 0.00 3.24
2436 3324 1.468736 GGGTTCGGACGTACATGACTC 60.469 57.143 0.00 0.00 0.00 3.36
2437 3325 0.529378 GGGTTCGGACGTACATGACT 59.471 55.000 0.00 0.00 0.00 3.41
2438 3326 0.529378 AGGGTTCGGACGTACATGAC 59.471 55.000 0.00 0.00 0.00 3.06
2439 3327 0.813184 GAGGGTTCGGACGTACATGA 59.187 55.000 0.00 0.00 0.00 3.07
2440 3328 0.528924 TGAGGGTTCGGACGTACATG 59.471 55.000 0.00 0.00 0.00 3.21
2441 3329 0.529378 GTGAGGGTTCGGACGTACAT 59.471 55.000 0.00 0.00 0.00 2.29
2442 3330 1.855213 CGTGAGGGTTCGGACGTACA 61.855 60.000 0.00 0.00 0.00 2.90
2443 3331 1.154150 CGTGAGGGTTCGGACGTAC 60.154 63.158 0.00 0.00 0.00 3.67
2444 3332 0.677731 ATCGTGAGGGTTCGGACGTA 60.678 55.000 0.00 0.00 33.56 3.57
2445 3333 1.530013 AATCGTGAGGGTTCGGACGT 61.530 55.000 0.00 0.00 33.56 4.34
2446 3334 0.389426 AAATCGTGAGGGTTCGGACG 60.389 55.000 0.00 0.00 0.00 4.79
2447 3335 2.165030 TCTAAATCGTGAGGGTTCGGAC 59.835 50.000 0.00 0.00 0.00 4.79
2448 3336 2.449464 TCTAAATCGTGAGGGTTCGGA 58.551 47.619 0.00 0.00 0.00 4.55
2449 3337 2.953466 TCTAAATCGTGAGGGTTCGG 57.047 50.000 0.00 0.00 0.00 4.30
2450 3338 4.243270 ACTTTCTAAATCGTGAGGGTTCG 58.757 43.478 0.00 0.00 0.00 3.95
2451 3339 5.348997 CAGACTTTCTAAATCGTGAGGGTTC 59.651 44.000 0.00 0.00 0.00 3.62
2452 3340 5.011738 TCAGACTTTCTAAATCGTGAGGGTT 59.988 40.000 0.00 0.00 0.00 4.11
2453 3341 4.527038 TCAGACTTTCTAAATCGTGAGGGT 59.473 41.667 0.00 0.00 0.00 4.34
2454 3342 5.073311 TCAGACTTTCTAAATCGTGAGGG 57.927 43.478 0.00 0.00 0.00 4.30
2455 3343 5.521735 CCATCAGACTTTCTAAATCGTGAGG 59.478 44.000 0.00 0.00 0.00 3.86
2456 3344 6.333416 TCCATCAGACTTTCTAAATCGTGAG 58.667 40.000 0.00 0.00 0.00 3.51
2457 3345 6.280855 TCCATCAGACTTTCTAAATCGTGA 57.719 37.500 0.00 0.00 0.00 4.35
2458 3346 7.545362 AATCCATCAGACTTTCTAAATCGTG 57.455 36.000 0.00 0.00 0.00 4.35
2459 3347 8.567285 AAAATCCATCAGACTTTCTAAATCGT 57.433 30.769 0.00 0.00 0.00 3.73
2460 3348 8.125448 GGAAAATCCATCAGACTTTCTAAATCG 58.875 37.037 0.00 0.00 36.28 3.34
2461 3349 9.183368 AGGAAAATCCATCAGACTTTCTAAATC 57.817 33.333 0.00 0.00 39.61 2.17
2466 3354 9.620259 GTAATAGGAAAATCCATCAGACTTTCT 57.380 33.333 0.00 0.00 39.61 2.52
2467 3355 9.620259 AGTAATAGGAAAATCCATCAGACTTTC 57.380 33.333 0.00 0.00 39.61 2.62
2482 3370 9.590451 CGACCACAGTTTTATAGTAATAGGAAA 57.410 33.333 0.00 0.00 0.00 3.13
2483 3371 8.199449 CCGACCACAGTTTTATAGTAATAGGAA 58.801 37.037 0.00 0.00 0.00 3.36
2484 3372 7.342799 ACCGACCACAGTTTTATAGTAATAGGA 59.657 37.037 0.00 0.00 0.00 2.94
2485 3373 7.495055 ACCGACCACAGTTTTATAGTAATAGG 58.505 38.462 0.00 0.00 0.00 2.57
2488 3376 9.321562 CATTACCGACCACAGTTTTATAGTAAT 57.678 33.333 0.00 0.00 0.00 1.89
2489 3377 8.313292 ACATTACCGACCACAGTTTTATAGTAA 58.687 33.333 0.00 0.00 0.00 2.24
2490 3378 7.839907 ACATTACCGACCACAGTTTTATAGTA 58.160 34.615 0.00 0.00 0.00 1.82
2491 3379 6.704310 ACATTACCGACCACAGTTTTATAGT 58.296 36.000 0.00 0.00 0.00 2.12
2492 3380 7.413657 CCAACATTACCGACCACAGTTTTATAG 60.414 40.741 0.00 0.00 0.00 1.31
2493 3381 6.372103 CCAACATTACCGACCACAGTTTTATA 59.628 38.462 0.00 0.00 0.00 0.98
2494 3382 5.182380 CCAACATTACCGACCACAGTTTTAT 59.818 40.000 0.00 0.00 0.00 1.40
2495 3383 4.515944 CCAACATTACCGACCACAGTTTTA 59.484 41.667 0.00 0.00 0.00 1.52
2496 3384 3.316868 CCAACATTACCGACCACAGTTTT 59.683 43.478 0.00 0.00 0.00 2.43
2497 3385 2.882137 CCAACATTACCGACCACAGTTT 59.118 45.455 0.00 0.00 0.00 2.66
2498 3386 2.158726 ACCAACATTACCGACCACAGTT 60.159 45.455 0.00 0.00 0.00 3.16
2499 3387 1.418637 ACCAACATTACCGACCACAGT 59.581 47.619 0.00 0.00 0.00 3.55
2500 3388 1.804151 CACCAACATTACCGACCACAG 59.196 52.381 0.00 0.00 0.00 3.66
2501 3389 1.416772 TCACCAACATTACCGACCACA 59.583 47.619 0.00 0.00 0.00 4.17
2502 3390 2.172851 TCACCAACATTACCGACCAC 57.827 50.000 0.00 0.00 0.00 4.16
2503 3391 2.932855 TTCACCAACATTACCGACCA 57.067 45.000 0.00 0.00 0.00 4.02
2504 3392 5.181622 TGTTAATTCACCAACATTACCGACC 59.818 40.000 0.00 0.00 29.93 4.79
2505 3393 6.148150 TCTGTTAATTCACCAACATTACCGAC 59.852 38.462 0.00 0.00 34.34 4.79
2506 3394 6.231951 TCTGTTAATTCACCAACATTACCGA 58.768 36.000 0.00 0.00 34.34 4.69
2507 3395 6.489127 TCTGTTAATTCACCAACATTACCG 57.511 37.500 0.00 0.00 34.34 4.02
2508 3396 9.139174 CATTTCTGTTAATTCACCAACATTACC 57.861 33.333 0.00 0.00 34.34 2.85
2509 3397 9.906660 TCATTTCTGTTAATTCACCAACATTAC 57.093 29.630 0.00 0.00 34.34 1.89
2511 3399 9.829507 TTTCATTTCTGTTAATTCACCAACATT 57.170 25.926 0.00 0.00 34.34 2.71
2512 3400 9.829507 TTTTCATTTCTGTTAATTCACCAACAT 57.170 25.926 0.00 0.00 34.34 2.71
2513 3401 9.829507 ATTTTCATTTCTGTTAATTCACCAACA 57.170 25.926 0.00 0.00 33.76 3.33
2525 3413 9.312904 TCAAATCCCTCTATTTTCATTTCTGTT 57.687 29.630 0.00 0.00 0.00 3.16
2526 3414 8.884124 TCAAATCCCTCTATTTTCATTTCTGT 57.116 30.769 0.00 0.00 0.00 3.41
2527 3415 9.578439 GTTCAAATCCCTCTATTTTCATTTCTG 57.422 33.333 0.00 0.00 0.00 3.02
2528 3416 8.753133 GGTTCAAATCCCTCTATTTTCATTTCT 58.247 33.333 0.00 0.00 0.00 2.52
2529 3417 7.981789 GGGTTCAAATCCCTCTATTTTCATTTC 59.018 37.037 0.00 0.00 41.58 2.17
2530 3418 7.851228 GGGTTCAAATCCCTCTATTTTCATTT 58.149 34.615 0.00 0.00 41.58 2.32
2531 3419 7.423844 GGGTTCAAATCCCTCTATTTTCATT 57.576 36.000 0.00 0.00 41.58 2.57
2543 3431 2.751259 GTTTACCGAGGGTTCAAATCCC 59.249 50.000 0.00 0.00 44.90 3.85
2544 3432 3.414269 TGTTTACCGAGGGTTCAAATCC 58.586 45.455 0.00 0.00 37.09 3.01
2545 3433 5.441709 TTTGTTTACCGAGGGTTCAAATC 57.558 39.130 0.00 0.00 37.09 2.17
2546 3434 5.737922 GCTTTTGTTTACCGAGGGTTCAAAT 60.738 40.000 0.00 0.00 37.09 2.32
2547 3435 4.440387 GCTTTTGTTTACCGAGGGTTCAAA 60.440 41.667 0.00 1.31 37.09 2.69
2548 3436 3.067040 GCTTTTGTTTACCGAGGGTTCAA 59.933 43.478 0.00 0.00 37.09 2.69
2549 3437 2.619646 GCTTTTGTTTACCGAGGGTTCA 59.380 45.455 0.00 0.00 37.09 3.18
2550 3438 2.030540 GGCTTTTGTTTACCGAGGGTTC 60.031 50.000 0.00 0.00 37.09 3.62
2551 3439 1.958579 GGCTTTTGTTTACCGAGGGTT 59.041 47.619 0.00 0.00 37.09 4.11
2552 3440 1.144298 AGGCTTTTGTTTACCGAGGGT 59.856 47.619 0.00 0.00 40.16 4.34
2553 3441 1.905637 AGGCTTTTGTTTACCGAGGG 58.094 50.000 0.00 0.00 0.00 4.30
2554 3442 3.404899 TGTAGGCTTTTGTTTACCGAGG 58.595 45.455 0.00 0.00 0.00 4.63
2555 3443 5.220605 GCTATGTAGGCTTTTGTTTACCGAG 60.221 44.000 0.00 0.00 0.00 4.63
2556 3444 4.632688 GCTATGTAGGCTTTTGTTTACCGA 59.367 41.667 0.00 0.00 0.00 4.69
2557 3445 4.393680 TGCTATGTAGGCTTTTGTTTACCG 59.606 41.667 0.00 0.00 0.00 4.02
2558 3446 5.414765 ACTGCTATGTAGGCTTTTGTTTACC 59.585 40.000 0.00 0.00 0.00 2.85
2559 3447 6.496338 ACTGCTATGTAGGCTTTTGTTTAC 57.504 37.500 0.00 0.00 0.00 2.01
2560 3448 6.150474 GGAACTGCTATGTAGGCTTTTGTTTA 59.850 38.462 0.00 0.00 0.00 2.01
2561 3449 5.048013 GGAACTGCTATGTAGGCTTTTGTTT 60.048 40.000 0.00 0.00 0.00 2.83
2562 3450 4.459337 GGAACTGCTATGTAGGCTTTTGTT 59.541 41.667 0.00 0.00 0.00 2.83
2563 3451 4.010349 GGAACTGCTATGTAGGCTTTTGT 58.990 43.478 0.00 0.00 0.00 2.83
2564 3452 4.009675 TGGAACTGCTATGTAGGCTTTTG 58.990 43.478 0.00 0.00 0.00 2.44
2565 3453 4.263506 ACTGGAACTGCTATGTAGGCTTTT 60.264 41.667 0.00 0.00 0.00 2.27
2566 3454 3.264450 ACTGGAACTGCTATGTAGGCTTT 59.736 43.478 0.00 0.00 0.00 3.51
2567 3455 2.840651 ACTGGAACTGCTATGTAGGCTT 59.159 45.455 0.00 0.00 0.00 4.35
2568 3456 2.169352 CACTGGAACTGCTATGTAGGCT 59.831 50.000 0.00 0.00 0.00 4.58
2569 3457 2.555199 CACTGGAACTGCTATGTAGGC 58.445 52.381 0.00 0.00 0.00 3.93
2570 3458 2.169352 AGCACTGGAACTGCTATGTAGG 59.831 50.000 0.00 0.00 43.37 3.18
2571 3459 3.533606 AGCACTGGAACTGCTATGTAG 57.466 47.619 0.00 0.00 43.37 2.74
2577 3465 0.254178 CCCATAGCACTGGAACTGCT 59.746 55.000 6.16 0.00 46.82 4.24
2578 3466 0.035056 ACCCATAGCACTGGAACTGC 60.035 55.000 6.16 0.00 38.69 4.40
2579 3467 2.086869 CAACCCATAGCACTGGAACTG 58.913 52.381 6.16 0.00 38.69 3.16
2580 3468 1.985159 TCAACCCATAGCACTGGAACT 59.015 47.619 6.16 0.00 38.69 3.01
2581 3469 2.488153 GTTCAACCCATAGCACTGGAAC 59.512 50.000 6.16 0.00 38.69 3.62
2582 3470 2.554344 GGTTCAACCCATAGCACTGGAA 60.554 50.000 0.00 0.00 38.69 3.53
2583 3471 1.004277 GGTTCAACCCATAGCACTGGA 59.996 52.381 0.00 0.00 38.69 3.86
2584 3472 1.271871 TGGTTCAACCCATAGCACTGG 60.272 52.381 3.42 0.00 37.50 4.00
2585 3473 1.812571 GTGGTTCAACCCATAGCACTG 59.187 52.381 3.42 0.00 37.50 3.66
2586 3474 1.705186 AGTGGTTCAACCCATAGCACT 59.295 47.619 3.42 0.00 43.51 4.40
2587 3475 2.084546 GAGTGGTTCAACCCATAGCAC 58.915 52.381 3.42 0.00 37.50 4.40
2588 3476 1.338674 CGAGTGGTTCAACCCATAGCA 60.339 52.381 3.42 0.00 37.50 3.49
2589 3477 1.369625 CGAGTGGTTCAACCCATAGC 58.630 55.000 3.42 0.00 37.50 2.97
2590 3478 2.012051 GCCGAGTGGTTCAACCCATAG 61.012 57.143 3.42 0.00 37.50 2.23
2591 3479 0.035820 GCCGAGTGGTTCAACCCATA 60.036 55.000 3.42 0.00 37.50 2.74
2592 3480 1.303317 GCCGAGTGGTTCAACCCAT 60.303 57.895 3.42 0.00 37.50 4.00
2593 3481 2.112297 GCCGAGTGGTTCAACCCA 59.888 61.111 3.42 0.00 37.50 4.51
2594 3482 2.671963 GGCCGAGTGGTTCAACCC 60.672 66.667 3.42 0.00 37.50 4.11
2595 3483 1.303317 ATGGCCGAGTGGTTCAACC 60.303 57.895 0.00 0.00 39.22 3.77
2596 3484 0.321653 AGATGGCCGAGTGGTTCAAC 60.322 55.000 0.00 0.00 37.67 3.18
2597 3485 0.036388 GAGATGGCCGAGTGGTTCAA 60.036 55.000 0.00 0.00 37.67 2.69
2598 3486 0.904865 AGAGATGGCCGAGTGGTTCA 60.905 55.000 0.00 0.00 37.67 3.18
2599 3487 0.250513 AAGAGATGGCCGAGTGGTTC 59.749 55.000 0.00 0.00 37.67 3.62
2600 3488 0.250513 GAAGAGATGGCCGAGTGGTT 59.749 55.000 0.00 0.00 37.67 3.67
2601 3489 0.616111 AGAAGAGATGGCCGAGTGGT 60.616 55.000 0.00 0.00 37.67 4.16
2602 3490 1.067821 GTAGAAGAGATGGCCGAGTGG 59.932 57.143 0.00 0.00 38.77 4.00
2603 3491 1.751351 TGTAGAAGAGATGGCCGAGTG 59.249 52.381 0.00 0.00 0.00 3.51
2604 3492 2.145397 TGTAGAAGAGATGGCCGAGT 57.855 50.000 0.00 0.00 0.00 4.18
2605 3493 4.855715 TTATGTAGAAGAGATGGCCGAG 57.144 45.455 0.00 0.00 0.00 4.63
2606 3494 5.080337 AGATTATGTAGAAGAGATGGCCGA 58.920 41.667 0.00 0.00 0.00 5.54
2607 3495 5.398603 AGATTATGTAGAAGAGATGGCCG 57.601 43.478 0.00 0.00 0.00 6.13
2633 3521 8.817100 CGCTATTCACTCAGTTTATGTTCAATA 58.183 33.333 0.00 0.00 0.00 1.90
2634 3522 7.549134 TCGCTATTCACTCAGTTTATGTTCAAT 59.451 33.333 0.00 0.00 0.00 2.57
2635 3523 6.871492 TCGCTATTCACTCAGTTTATGTTCAA 59.129 34.615 0.00 0.00 0.00 2.69
2636 3524 6.394809 TCGCTATTCACTCAGTTTATGTTCA 58.605 36.000 0.00 0.00 0.00 3.18
2637 3525 6.531948 ACTCGCTATTCACTCAGTTTATGTTC 59.468 38.462 0.00 0.00 0.00 3.18
2638 3526 6.398918 ACTCGCTATTCACTCAGTTTATGTT 58.601 36.000 0.00 0.00 0.00 2.71
2639 3527 5.967088 ACTCGCTATTCACTCAGTTTATGT 58.033 37.500 0.00 0.00 0.00 2.29
2640 3528 6.893958 AACTCGCTATTCACTCAGTTTATG 57.106 37.500 0.00 0.00 0.00 1.90
2641 3529 7.201444 CGAAAACTCGCTATTCACTCAGTTTAT 60.201 37.037 0.00 0.00 33.89 1.40
2642 3530 6.089016 CGAAAACTCGCTATTCACTCAGTTTA 59.911 38.462 0.00 0.00 33.89 2.01
2643 3531 5.107453 CGAAAACTCGCTATTCACTCAGTTT 60.107 40.000 0.00 0.00 35.98 2.66
2644 3532 4.386049 CGAAAACTCGCTATTCACTCAGTT 59.614 41.667 0.00 0.00 0.00 3.16
2645 3533 3.921021 CGAAAACTCGCTATTCACTCAGT 59.079 43.478 0.00 0.00 0.00 3.41
2646 3534 3.921021 ACGAAAACTCGCTATTCACTCAG 59.079 43.478 0.00 0.00 36.44 3.35
2647 3535 3.909430 ACGAAAACTCGCTATTCACTCA 58.091 40.909 0.00 0.00 36.44 3.41
2648 3536 5.742453 TGATACGAAAACTCGCTATTCACTC 59.258 40.000 0.00 0.00 36.44 3.51
2649 3537 5.515626 GTGATACGAAAACTCGCTATTCACT 59.484 40.000 0.00 0.00 36.44 3.41
2650 3538 5.515626 AGTGATACGAAAACTCGCTATTCAC 59.484 40.000 0.00 9.67 36.44 3.18
2651 3539 5.647589 AGTGATACGAAAACTCGCTATTCA 58.352 37.500 0.00 0.00 36.44 2.57
2652 3540 7.675270 TTAGTGATACGAAAACTCGCTATTC 57.325 36.000 0.00 0.00 33.40 1.75
2653 3541 7.758528 ACTTTAGTGATACGAAAACTCGCTATT 59.241 33.333 0.00 0.00 33.40 1.73
2654 3542 7.256286 ACTTTAGTGATACGAAAACTCGCTAT 58.744 34.615 0.00 0.00 33.40 2.97
2655 3543 6.615088 ACTTTAGTGATACGAAAACTCGCTA 58.385 36.000 0.00 0.00 36.44 4.26
2656 3544 5.467705 ACTTTAGTGATACGAAAACTCGCT 58.532 37.500 0.00 0.00 36.44 4.93
2657 3545 5.758570 ACTTTAGTGATACGAAAACTCGC 57.241 39.130 0.00 0.00 36.44 5.03
2658 3546 7.008086 CCTGTACTTTAGTGATACGAAAACTCG 59.992 40.741 0.00 0.00 39.31 4.18
2659 3547 7.811713 ACCTGTACTTTAGTGATACGAAAACTC 59.188 37.037 0.00 0.00 0.00 3.01
2660 3548 7.664758 ACCTGTACTTTAGTGATACGAAAACT 58.335 34.615 0.00 0.00 0.00 2.66
2661 3549 7.880059 ACCTGTACTTTAGTGATACGAAAAC 57.120 36.000 0.00 0.00 0.00 2.43
2662 3550 8.575589 TGTACCTGTACTTTAGTGATACGAAAA 58.424 33.333 8.75 0.00 37.00 2.29
2663 3551 8.109705 TGTACCTGTACTTTAGTGATACGAAA 57.890 34.615 8.75 0.00 37.00 3.46
2664 3552 7.686438 TGTACCTGTACTTTAGTGATACGAA 57.314 36.000 8.75 0.00 37.00 3.85
2665 3553 7.362056 GGTTGTACCTGTACTTTAGTGATACGA 60.362 40.741 8.75 0.00 37.00 3.43
2666 3554 6.749118 GGTTGTACCTGTACTTTAGTGATACG 59.251 42.308 8.75 0.00 37.00 3.06
2683 3571 3.554337 CGCCCTACATCATAGGTTGTACC 60.554 52.174 0.00 0.00 38.99 3.34
2684 3572 3.554337 CCGCCCTACATCATAGGTTGTAC 60.554 52.174 0.00 0.00 32.88 2.90
2685 3573 2.631062 CCGCCCTACATCATAGGTTGTA 59.369 50.000 0.00 0.00 32.88 2.41
2686 3574 1.416401 CCGCCCTACATCATAGGTTGT 59.584 52.381 0.00 0.00 32.88 3.32
2687 3575 1.691976 TCCGCCCTACATCATAGGTTG 59.308 52.381 0.00 0.00 32.88 3.77
2688 3576 2.097110 TCCGCCCTACATCATAGGTT 57.903 50.000 0.00 0.00 32.88 3.50
2689 3577 1.692519 GTTCCGCCCTACATCATAGGT 59.307 52.381 0.00 0.00 32.88 3.08
2690 3578 1.002087 GGTTCCGCCCTACATCATAGG 59.998 57.143 0.00 0.00 34.52 2.57
2691 3579 2.457366 GGTTCCGCCCTACATCATAG 57.543 55.000 0.00 0.00 0.00 2.23
2799 3689 6.650807 GTGATCTATTCTTGTTGGTTGAGTGA 59.349 38.462 0.00 0.00 0.00 3.41
2800 3690 6.427853 TGTGATCTATTCTTGTTGGTTGAGTG 59.572 38.462 0.00 0.00 0.00 3.51
2801 3691 6.428159 GTGTGATCTATTCTTGTTGGTTGAGT 59.572 38.462 0.00 0.00 0.00 3.41
2866 3778 5.361427 TGTATCGTCCTTTGTTGACTTTGA 58.639 37.500 0.00 0.00 0.00 2.69
2892 3804 1.273759 GGAGAAGAACCGGTTACCCT 58.726 55.000 22.33 16.58 0.00 4.34
3001 3920 5.536538 TGCTCATCCATTACGAATCTACTCT 59.463 40.000 0.00 0.00 0.00 3.24
3010 3929 3.198409 AGCATTGCTCATCCATTACGA 57.802 42.857 5.03 0.00 30.62 3.43
3120 4040 3.083997 CAGTAAGGGGCCGAGGCT 61.084 66.667 14.33 0.00 41.60 4.58
3299 4227 1.987855 CCAAGTCTACAGGGCCCGA 60.988 63.158 18.44 4.16 0.00 5.14
3452 4402 3.263425 TGATTAGGTGTCAAGAGGAACCC 59.737 47.826 0.00 0.00 32.85 4.11
3477 4427 8.962679 GCTACTACCTAAGTCTGATATGCTATT 58.037 37.037 0.00 0.00 39.80 1.73
3488 4438 5.132043 AGACATGGCTACTACCTAAGTCT 57.868 43.478 0.00 0.00 39.80 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.