Multiple sequence alignment - TraesCS7D01G511800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G511800 chr7D 100.000 2393 0 0 1 2393 613779577 613777185 0.000000e+00 4420
1 TraesCS7D01G511800 chr5D 99.025 513 4 1 1 512 548293973 548293461 0.000000e+00 918
2 TraesCS7D01G511800 chr5D 98.635 513 6 1 1 512 408810359 408810871 0.000000e+00 907
3 TraesCS7D01G511800 chr5D 98.635 513 6 1 1 512 408819714 408820226 0.000000e+00 907
4 TraesCS7D01G511800 chr5D 100.000 71 0 0 510 580 408820257 408820327 5.370000e-27 132
5 TraesCS7D01G511800 chr5D 100.000 71 0 0 510 580 548293430 548293360 5.370000e-27 132
6 TraesCS7D01G511800 chr1D 99.025 513 4 1 1 512 414534558 414535070 0.000000e+00 918
7 TraesCS7D01G511800 chr1D 98.830 513 5 1 1 512 414543923 414544435 0.000000e+00 913
8 TraesCS7D01G511800 chr1D 100.000 71 0 0 510 580 414535101 414535171 5.370000e-27 132
9 TraesCS7D01G511800 chr1D 100.000 71 0 0 510 580 414544466 414544536 5.370000e-27 132
10 TraesCS7D01G511800 chrUn 98.635 513 6 1 1 512 367032464 367032976 0.000000e+00 907
11 TraesCS7D01G511800 chrUn 100.000 71 0 0 510 580 367033007 367033077 5.370000e-27 132
12 TraesCS7D01G511800 chr6D 98.635 513 5 2 1 512 469607709 469607198 0.000000e+00 907
13 TraesCS7D01G511800 chr6D 100.000 71 0 0 510 580 469607167 469607097 5.370000e-27 132
14 TraesCS7D01G511800 chr4D 98.635 513 6 1 1 512 45315224 45315736 0.000000e+00 907
15 TraesCS7D01G511800 chr4D 98.635 513 6 1 1 512 45324580 45325092 0.000000e+00 907
16 TraesCS7D01G511800 chr4D 100.000 72 0 0 510 581 45325123 45325194 1.490000e-27 134
17 TraesCS7D01G511800 chr4D 100.000 71 0 0 510 580 45315767 45315837 5.370000e-27 132
18 TraesCS7D01G511800 chr7B 88.402 707 60 10 701 1396 730270571 730271266 0.000000e+00 832
19 TraesCS7D01G511800 chr7B 85.870 736 75 15 764 1486 704830000 704829281 0.000000e+00 756
20 TraesCS7D01G511800 chr7B 85.997 707 71 15 784 1477 704798109 704797418 0.000000e+00 732
21 TraesCS7D01G511800 chr7B 81.559 808 115 20 698 1486 704893387 704892595 9.330000e-179 636
22 TraesCS7D01G511800 chr7B 79.764 677 85 15 1485 2125 704822710 704822050 6.070000e-121 444
23 TraesCS7D01G511800 chr7B 86.850 327 39 4 1483 1807 704892072 704891748 1.750000e-96 363
24 TraesCS7D01G511800 chr7B 83.750 400 42 8 1110 1489 704823564 704823168 8.130000e-95 357
25 TraesCS7D01G511800 chr7A 89.286 672 50 9 760 1416 705593099 705592435 0.000000e+00 822
26 TraesCS7D01G511800 chr7A 93.151 73 5 0 655 727 705593172 705593100 9.050000e-20 108
27 TraesCS7D01G511800 chr3D 96.154 78 2 1 510 587 116016328 116016252 2.500000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G511800 chr7D 613777185 613779577 2392 True 4420.0 4420 100.0000 1 2393 1 chr7D.!!$R1 2392
1 TraesCS7D01G511800 chr5D 408810359 408810871 512 False 907.0 907 98.6350 1 512 1 chr5D.!!$F1 511
2 TraesCS7D01G511800 chr5D 548293360 548293973 613 True 525.0 918 99.5125 1 580 2 chr5D.!!$R1 579
3 TraesCS7D01G511800 chr5D 408819714 408820327 613 False 519.5 907 99.3175 1 580 2 chr5D.!!$F2 579
4 TraesCS7D01G511800 chr1D 414534558 414535171 613 False 525.0 918 99.5125 1 580 2 chr1D.!!$F1 579
5 TraesCS7D01G511800 chr1D 414543923 414544536 613 False 522.5 913 99.4150 1 580 2 chr1D.!!$F2 579
6 TraesCS7D01G511800 chrUn 367032464 367033077 613 False 519.5 907 99.3175 1 580 2 chrUn.!!$F1 579
7 TraesCS7D01G511800 chr6D 469607097 469607709 612 True 519.5 907 99.3175 1 580 2 chr6D.!!$R1 579
8 TraesCS7D01G511800 chr4D 45324580 45325194 614 False 520.5 907 99.3175 1 581 2 chr4D.!!$F2 580
9 TraesCS7D01G511800 chr4D 45315224 45315837 613 False 519.5 907 99.3175 1 580 2 chr4D.!!$F1 579
10 TraesCS7D01G511800 chr7B 730270571 730271266 695 False 832.0 832 88.4020 701 1396 1 chr7B.!!$F1 695
11 TraesCS7D01G511800 chr7B 704829281 704830000 719 True 756.0 756 85.8700 764 1486 1 chr7B.!!$R2 722
12 TraesCS7D01G511800 chr7B 704797418 704798109 691 True 732.0 732 85.9970 784 1477 1 chr7B.!!$R1 693
13 TraesCS7D01G511800 chr7B 704891748 704893387 1639 True 499.5 636 84.2045 698 1807 2 chr7B.!!$R4 1109
14 TraesCS7D01G511800 chr7B 704822050 704823564 1514 True 400.5 444 81.7570 1110 2125 2 chr7B.!!$R3 1015
15 TraesCS7D01G511800 chr7A 705592435 705593172 737 True 465.0 822 91.2185 655 1416 2 chr7A.!!$R1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 627 0.031043 CGTCACACCTACGTCAACCA 59.969 55.0 0.0 0.0 35.66 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 2560 0.033405 CCTACGTTCTCCTCCCCTCA 60.033 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 230 1.343069 ACTGGACCAAGTGAGGAGAC 58.657 55.000 0.00 0.00 0.00 3.36
581 616 2.355481 GACACGGGTCGTCACACC 60.355 66.667 0.00 0.00 38.32 4.16
582 617 2.836360 ACACGGGTCGTCACACCT 60.836 61.111 0.00 0.00 38.32 4.00
583 618 1.518056 GACACGGGTCGTCACACCTA 61.518 60.000 0.00 0.00 38.32 3.08
584 619 1.080974 CACGGGTCGTCACACCTAC 60.081 63.158 0.00 0.00 38.32 3.18
585 620 2.177531 CGGGTCGTCACACCTACG 59.822 66.667 0.00 0.00 41.64 3.51
586 621 2.620112 CGGGTCGTCACACCTACGT 61.620 63.158 0.00 0.00 41.08 3.57
587 622 1.211190 GGGTCGTCACACCTACGTC 59.789 63.158 0.00 0.00 41.08 4.34
588 623 1.518056 GGGTCGTCACACCTACGTCA 61.518 60.000 0.00 0.00 41.08 4.35
589 624 0.311790 GGTCGTCACACCTACGTCAA 59.688 55.000 0.00 0.00 41.08 3.18
590 625 1.402511 GTCGTCACACCTACGTCAAC 58.597 55.000 0.00 0.00 41.08 3.18
591 626 0.311790 TCGTCACACCTACGTCAACC 59.688 55.000 0.00 0.00 41.08 3.77
592 627 0.031043 CGTCACACCTACGTCAACCA 59.969 55.000 0.00 0.00 35.66 3.67
593 628 1.494824 GTCACACCTACGTCAACCAC 58.505 55.000 0.00 0.00 0.00 4.16
594 629 1.068127 GTCACACCTACGTCAACCACT 59.932 52.381 0.00 0.00 0.00 4.00
595 630 1.067974 TCACACCTACGTCAACCACTG 59.932 52.381 0.00 0.00 0.00 3.66
596 631 1.067974 CACACCTACGTCAACCACTGA 59.932 52.381 0.00 0.00 0.00 3.41
597 632 1.758280 ACACCTACGTCAACCACTGAA 59.242 47.619 0.00 0.00 35.22 3.02
598 633 2.132762 CACCTACGTCAACCACTGAAC 58.867 52.381 0.00 0.00 35.22 3.18
599 634 1.069668 ACCTACGTCAACCACTGAACC 59.930 52.381 0.00 0.00 35.22 3.62
600 635 1.607251 CCTACGTCAACCACTGAACCC 60.607 57.143 0.00 0.00 35.22 4.11
601 636 1.343465 CTACGTCAACCACTGAACCCT 59.657 52.381 0.00 0.00 35.22 4.34
602 637 1.416243 ACGTCAACCACTGAACCCTA 58.584 50.000 0.00 0.00 35.22 3.53
603 638 1.343465 ACGTCAACCACTGAACCCTAG 59.657 52.381 0.00 0.00 35.22 3.02
604 639 1.616865 CGTCAACCACTGAACCCTAGA 59.383 52.381 0.00 0.00 35.22 2.43
605 640 2.233922 CGTCAACCACTGAACCCTAGAT 59.766 50.000 0.00 0.00 35.22 1.98
606 641 3.600388 GTCAACCACTGAACCCTAGATG 58.400 50.000 0.00 0.00 35.22 2.90
607 642 3.008049 GTCAACCACTGAACCCTAGATGT 59.992 47.826 0.00 0.00 35.22 3.06
608 643 3.650942 TCAACCACTGAACCCTAGATGTT 59.349 43.478 0.00 0.00 0.00 2.71
609 644 3.983044 ACCACTGAACCCTAGATGTTC 57.017 47.619 14.63 14.63 41.91 3.18
610 645 2.572104 ACCACTGAACCCTAGATGTTCC 59.428 50.000 17.29 5.64 41.08 3.62
611 646 2.092914 CCACTGAACCCTAGATGTTCCC 60.093 54.545 17.29 1.67 41.08 3.97
612 647 1.831736 ACTGAACCCTAGATGTTCCCG 59.168 52.381 17.29 12.62 41.08 5.14
613 648 2.108168 CTGAACCCTAGATGTTCCCGA 58.892 52.381 17.29 4.16 41.08 5.14
614 649 2.101582 CTGAACCCTAGATGTTCCCGAG 59.898 54.545 17.29 8.58 41.08 4.63
615 650 2.291996 TGAACCCTAGATGTTCCCGAGA 60.292 50.000 17.29 2.12 41.08 4.04
616 651 1.777941 ACCCTAGATGTTCCCGAGAC 58.222 55.000 0.00 0.00 0.00 3.36
617 652 1.006758 ACCCTAGATGTTCCCGAGACA 59.993 52.381 0.00 0.00 0.00 3.41
618 653 2.108168 CCCTAGATGTTCCCGAGACAA 58.892 52.381 0.00 0.00 0.00 3.18
619 654 2.700897 CCCTAGATGTTCCCGAGACAAT 59.299 50.000 0.00 0.00 0.00 2.71
620 655 3.493350 CCCTAGATGTTCCCGAGACAATG 60.493 52.174 0.00 0.00 0.00 2.82
621 656 2.029838 AGATGTTCCCGAGACAATGC 57.970 50.000 0.00 0.00 0.00 3.56
622 657 1.556911 AGATGTTCCCGAGACAATGCT 59.443 47.619 0.00 0.00 0.00 3.79
623 658 1.936547 GATGTTCCCGAGACAATGCTC 59.063 52.381 0.00 0.00 0.00 4.26
624 659 0.036388 TGTTCCCGAGACAATGCTCC 60.036 55.000 0.00 0.00 0.00 4.70
625 660 0.250513 GTTCCCGAGACAATGCTCCT 59.749 55.000 0.00 0.00 0.00 3.69
626 661 0.984230 TTCCCGAGACAATGCTCCTT 59.016 50.000 0.00 0.00 0.00 3.36
627 662 0.537188 TCCCGAGACAATGCTCCTTC 59.463 55.000 0.00 0.00 0.00 3.46
628 663 0.539051 CCCGAGACAATGCTCCTTCT 59.461 55.000 0.00 0.00 0.00 2.85
629 664 1.472376 CCCGAGACAATGCTCCTTCTC 60.472 57.143 0.00 0.00 0.00 2.87
630 665 1.480137 CCGAGACAATGCTCCTTCTCT 59.520 52.381 0.00 0.00 33.64 3.10
631 666 2.093764 CCGAGACAATGCTCCTTCTCTT 60.094 50.000 0.00 0.00 33.64 2.85
632 667 2.928757 CGAGACAATGCTCCTTCTCTTG 59.071 50.000 0.00 0.00 33.64 3.02
633 668 2.677337 GAGACAATGCTCCTTCTCTTGC 59.323 50.000 0.00 0.00 33.14 4.01
634 669 2.305343 AGACAATGCTCCTTCTCTTGCT 59.695 45.455 0.00 0.00 0.00 3.91
635 670 3.517100 AGACAATGCTCCTTCTCTTGCTA 59.483 43.478 0.00 0.00 0.00 3.49
636 671 4.019860 AGACAATGCTCCTTCTCTTGCTAA 60.020 41.667 0.00 0.00 0.00 3.09
637 672 4.006319 ACAATGCTCCTTCTCTTGCTAAC 58.994 43.478 0.00 0.00 0.00 2.34
638 673 3.988976 ATGCTCCTTCTCTTGCTAACA 57.011 42.857 0.00 0.00 0.00 2.41
639 674 3.325293 TGCTCCTTCTCTTGCTAACAG 57.675 47.619 0.00 0.00 0.00 3.16
640 675 2.006169 GCTCCTTCTCTTGCTAACAGC 58.994 52.381 0.00 0.00 42.82 4.40
641 676 2.354604 GCTCCTTCTCTTGCTAACAGCT 60.355 50.000 0.00 0.00 42.97 4.24
642 677 3.867984 GCTCCTTCTCTTGCTAACAGCTT 60.868 47.826 0.00 0.00 42.97 3.74
643 678 4.322567 CTCCTTCTCTTGCTAACAGCTTT 58.677 43.478 0.00 0.00 42.97 3.51
644 679 4.067896 TCCTTCTCTTGCTAACAGCTTTG 58.932 43.478 0.00 0.00 42.97 2.77
645 680 4.067896 CCTTCTCTTGCTAACAGCTTTGA 58.932 43.478 0.00 0.00 42.97 2.69
646 681 4.699257 CCTTCTCTTGCTAACAGCTTTGAT 59.301 41.667 0.00 0.00 42.97 2.57
647 682 5.877012 CCTTCTCTTGCTAACAGCTTTGATA 59.123 40.000 0.00 0.00 42.97 2.15
648 683 6.183360 CCTTCTCTTGCTAACAGCTTTGATAC 60.183 42.308 0.00 0.00 42.97 2.24
649 684 6.042638 TCTCTTGCTAACAGCTTTGATACT 57.957 37.500 0.00 0.00 42.97 2.12
650 685 6.102663 TCTCTTGCTAACAGCTTTGATACTC 58.897 40.000 0.00 0.00 42.97 2.59
651 686 6.042638 TCTTGCTAACAGCTTTGATACTCT 57.957 37.500 0.00 0.00 42.97 3.24
652 687 6.467677 TCTTGCTAACAGCTTTGATACTCTT 58.532 36.000 0.00 0.00 42.97 2.85
653 688 6.591834 TCTTGCTAACAGCTTTGATACTCTTC 59.408 38.462 0.00 0.00 42.97 2.87
657 692 8.206867 TGCTAACAGCTTTGATACTCTTCATAT 58.793 33.333 0.00 0.00 42.97 1.78
662 697 7.659390 ACAGCTTTGATACTCTTCATATAAGCC 59.341 37.037 0.00 0.00 37.55 4.35
671 706 6.596621 ACTCTTCATATAAGCCCCTTTTCTC 58.403 40.000 0.00 0.00 0.00 2.87
672 707 5.611374 TCTTCATATAAGCCCCTTTTCTCG 58.389 41.667 0.00 0.00 0.00 4.04
705 740 1.065851 CACGATTATGCTTGCATGCCA 59.934 47.619 20.65 6.39 0.00 4.92
772 813 4.736126 TTAATCCTGCTCAACTGATCGA 57.264 40.909 0.00 0.00 0.00 3.59
819 863 2.074547 TTAGGAGAAGCAAACGGACG 57.925 50.000 0.00 0.00 0.00 4.79
820 864 0.389426 TAGGAGAAGCAAACGGACGC 60.389 55.000 0.00 0.00 0.00 5.19
823 867 2.127758 GAAGCAAACGGACGCGTG 60.128 61.111 20.70 5.54 0.00 5.34
864 908 2.280628 GGAAACTGAAGCCGATCGATT 58.719 47.619 18.66 11.08 0.00 3.34
875 919 2.270923 CCGATCGATTCACAAAGCTCA 58.729 47.619 18.66 0.00 0.00 4.26
876 920 2.868583 CCGATCGATTCACAAAGCTCAT 59.131 45.455 18.66 0.00 0.00 2.90
939 986 4.460948 TTAATCTCTACCCAACACCGAC 57.539 45.455 0.00 0.00 0.00 4.79
940 987 0.815734 ATCTCTACCCAACACCGACG 59.184 55.000 0.00 0.00 0.00 5.12
941 988 0.250858 TCTCTACCCAACACCGACGA 60.251 55.000 0.00 0.00 0.00 4.20
989 1036 1.476488 GCCAACCAGCGAAACCATAAT 59.524 47.619 0.00 0.00 0.00 1.28
990 1037 2.685897 GCCAACCAGCGAAACCATAATA 59.314 45.455 0.00 0.00 0.00 0.98
991 1038 3.243068 GCCAACCAGCGAAACCATAATAG 60.243 47.826 0.00 0.00 0.00 1.73
1001 1049 5.235516 CGAAACCATAATAGCCCTAACGAT 58.764 41.667 0.00 0.00 0.00 3.73
1002 1050 5.120208 CGAAACCATAATAGCCCTAACGATG 59.880 44.000 0.00 0.00 0.00 3.84
1003 1051 5.818678 AACCATAATAGCCCTAACGATGA 57.181 39.130 0.00 0.00 0.00 2.92
1017 1076 5.243954 CCTAACGATGAGTATCTCCATGGAA 59.756 44.000 17.00 7.48 34.92 3.53
1120 1179 2.190578 GCCATGAGGAGTTCCGGG 59.809 66.667 0.00 0.00 42.08 5.73
1287 1352 1.135024 GTTGCAATGGATGACGGCATT 60.135 47.619 4.56 0.00 34.11 3.56
1359 1436 1.062734 ACGGGGTATAGATGGTGGACA 60.063 52.381 0.00 0.00 0.00 4.02
1419 1508 5.325494 CCTCGCTAGCTTATTACTATGTCG 58.675 45.833 13.93 0.00 0.00 4.35
1421 1510 6.183360 CCTCGCTAGCTTATTACTATGTCGAT 60.183 42.308 13.93 0.00 0.00 3.59
1434 1523 0.684535 TGTCGATCTTTCACCCAGCA 59.315 50.000 0.00 0.00 0.00 4.41
1435 1524 1.278985 TGTCGATCTTTCACCCAGCAT 59.721 47.619 0.00 0.00 0.00 3.79
1437 1526 1.554617 TCGATCTTTCACCCAGCATGA 59.445 47.619 0.00 0.00 39.69 3.07
1438 1527 1.667724 CGATCTTTCACCCAGCATGAC 59.332 52.381 0.00 0.00 39.69 3.06
1580 2362 5.242838 TCCTTTGTAATCGCATGTTTTCCTT 59.757 36.000 0.00 0.00 0.00 3.36
1582 2364 6.089417 CCTTTGTAATCGCATGTTTTCCTTTC 59.911 38.462 0.00 0.00 0.00 2.62
1588 2370 4.358851 TCGCATGTTTTCCTTTCAGTTTG 58.641 39.130 0.00 0.00 0.00 2.93
1591 2373 5.063312 CGCATGTTTTCCTTTCAGTTTGTTT 59.937 36.000 0.00 0.00 0.00 2.83
1594 2376 7.481483 GCATGTTTTCCTTTCAGTTTGTTTTTC 59.519 33.333 0.00 0.00 0.00 2.29
1598 2380 7.883229 TTTCCTTTCAGTTTGTTTTTCAGAC 57.117 32.000 0.00 0.00 0.00 3.51
1622 2404 7.351414 CTGAAAGTTGAATCAAGTGTCGATA 57.649 36.000 14.35 0.00 34.66 2.92
1634 2416 3.320626 AGTGTCGATATTCATGATGGCG 58.679 45.455 0.00 0.00 0.00 5.69
1637 2419 2.342651 GTCGATATTCATGATGGCGACG 59.657 50.000 18.41 11.05 36.57 5.12
1663 2445 4.104831 AGATTGGTAGCTTTAGTCTGGGT 58.895 43.478 0.00 0.00 0.00 4.51
1670 2452 2.040412 AGCTTTAGTCTGGGTTCAAGGG 59.960 50.000 0.00 0.00 0.00 3.95
1671 2453 2.224793 GCTTTAGTCTGGGTTCAAGGGT 60.225 50.000 0.00 0.00 0.00 4.34
1713 2495 1.705873 AGATATGTGTCTCGGGACCC 58.294 55.000 14.10 0.68 41.47 4.46
1718 2500 1.292541 GTGTCTCGGGACCCAAGAC 59.707 63.158 22.96 22.96 41.47 3.01
1719 2501 1.152419 TGTCTCGGGACCCAAGACA 60.152 57.895 27.55 27.55 45.26 3.41
1721 2504 0.395312 GTCTCGGGACCCAAGACAAA 59.605 55.000 24.46 0.00 39.36 2.83
1726 2509 3.681593 TCGGGACCCAAGACAAATAAAG 58.318 45.455 12.15 0.00 0.00 1.85
1767 2550 1.691219 GGTTCCCCTTGCATCTGGA 59.309 57.895 0.00 0.00 0.00 3.86
1777 2560 1.661463 TGCATCTGGAAAGGAGAGGT 58.339 50.000 0.00 0.00 0.00 3.85
1785 2568 1.199615 GAAAGGAGAGGTGAGGGGAG 58.800 60.000 0.00 0.00 0.00 4.30
1787 2570 1.156322 AAGGAGAGGTGAGGGGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
1792 2575 1.305381 AGGTGAGGGGAGGAGAACG 60.305 63.158 0.00 0.00 0.00 3.95
1794 2577 0.324091 GGTGAGGGGAGGAGAACGTA 60.324 60.000 0.00 0.00 0.00 3.57
1801 2584 0.393537 GGAGGAGAACGTAGGGTCGA 60.394 60.000 0.00 0.00 34.70 4.20
1808 2591 0.108329 AACGTAGGGTCGATGCTTGG 60.108 55.000 0.00 0.00 34.70 3.61
1812 2595 1.480954 GTAGGGTCGATGCTTGGAGAA 59.519 52.381 0.00 0.00 0.00 2.87
1816 2599 1.066858 GGTCGATGCTTGGAGAACAGA 60.067 52.381 0.00 0.00 0.00 3.41
1858 2659 1.476833 GGCAAAGCCGAATGGGATAGA 60.477 52.381 0.00 0.00 39.62 1.98
1861 2662 3.545703 CAAAGCCGAATGGGATAGAAGT 58.454 45.455 0.00 0.00 38.47 3.01
1870 2671 0.470341 GGGATAGAAGTCACCCAGCC 59.530 60.000 0.00 0.00 41.72 4.85
1872 2681 1.139853 GGATAGAAGTCACCCAGCCAG 59.860 57.143 0.00 0.00 0.00 4.85
1879 2688 3.156714 CACCCAGCCAGTGGTGTA 58.843 61.111 11.74 0.00 46.37 2.90
1882 2691 0.328258 ACCCAGCCAGTGGTGTATTC 59.672 55.000 11.74 0.00 46.37 1.75
1885 2694 1.610624 CCAGCCAGTGGTGTATTCGTT 60.611 52.381 11.74 0.00 42.17 3.85
1888 2697 1.338769 GCCAGTGGTGTATTCGTTCCT 60.339 52.381 11.74 0.00 0.00 3.36
1889 2698 2.874457 GCCAGTGGTGTATTCGTTCCTT 60.874 50.000 11.74 0.00 0.00 3.36
1890 2699 3.618019 GCCAGTGGTGTATTCGTTCCTTA 60.618 47.826 11.74 0.00 0.00 2.69
1894 2703 5.520288 CAGTGGTGTATTCGTTCCTTAGATG 59.480 44.000 0.00 0.00 0.00 2.90
1898 2707 4.738740 GTGTATTCGTTCCTTAGATGGACG 59.261 45.833 0.00 0.00 35.58 4.79
1901 2710 1.822990 TCGTTCCTTAGATGGACGCTT 59.177 47.619 0.00 0.00 35.58 4.68
1910 2719 2.447443 AGATGGACGCTTGTCTACTGA 58.553 47.619 0.00 0.00 42.47 3.41
1911 2720 2.425312 AGATGGACGCTTGTCTACTGAG 59.575 50.000 0.00 0.00 42.47 3.35
1913 2722 1.961394 TGGACGCTTGTCTACTGAGTT 59.039 47.619 0.00 0.00 42.47 3.01
1914 2723 2.288213 TGGACGCTTGTCTACTGAGTTG 60.288 50.000 0.00 0.00 42.47 3.16
1916 2725 2.981140 GACGCTTGTCTACTGAGTTGTC 59.019 50.000 0.00 0.00 39.61 3.18
1917 2726 2.288273 ACGCTTGTCTACTGAGTTGTCC 60.288 50.000 0.00 0.00 0.00 4.02
1918 2727 2.329379 GCTTGTCTACTGAGTTGTCCG 58.671 52.381 0.00 0.00 0.00 4.79
1919 2728 2.927014 GCTTGTCTACTGAGTTGTCCGG 60.927 54.545 0.00 0.00 0.00 5.14
1921 2730 0.108756 GTCTACTGAGTTGTCCGGCC 60.109 60.000 0.00 0.00 0.00 6.13
1922 2731 1.153823 CTACTGAGTTGTCCGGCCG 60.154 63.158 21.04 21.04 0.00 6.13
1923 2732 2.558554 CTACTGAGTTGTCCGGCCGG 62.559 65.000 39.13 39.13 0.00 6.13
1924 2733 4.003788 CTGAGTTGTCCGGCCGGT 62.004 66.667 41.57 24.62 36.47 5.28
1925 2734 4.308458 TGAGTTGTCCGGCCGGTG 62.308 66.667 41.57 19.95 36.47 4.94
1945 2754 2.290260 TGCCTTGACTATCAGGGTTGTG 60.290 50.000 8.58 0.00 44.60 3.33
1953 2762 0.555769 ATCAGGGTTGTGGTGGTTGT 59.444 50.000 0.00 0.00 0.00 3.32
1986 2802 9.877178 GATTCTTAGATTTCAGTTCTCTTGGTA 57.123 33.333 0.00 0.00 0.00 3.25
1991 2807 9.793259 TTAGATTTCAGTTCTCTTGGTATTTGT 57.207 29.630 0.00 0.00 0.00 2.83
2001 2817 7.026631 TCTCTTGGTATTTGTTTTCACTGTG 57.973 36.000 0.17 0.17 0.00 3.66
2012 2828 6.075762 TGTTTTCACTGTGATCCAATGAAG 57.924 37.500 11.86 0.00 31.34 3.02
2017 2833 3.005554 ACTGTGATCCAATGAAGAAGCG 58.994 45.455 0.00 0.00 0.00 4.68
2019 2835 1.064654 GTGATCCAATGAAGAAGCGGC 59.935 52.381 0.00 0.00 0.00 6.53
2029 2845 1.298859 AAGAAGCGGCGGTTTAGCAG 61.299 55.000 26.01 0.00 39.27 4.24
2030 2846 2.032071 AAGCGGCGGTTTAGCAGT 59.968 55.556 19.75 0.00 39.27 4.40
2043 2859 3.334583 TTAGCAGTCTGCCTTGTAAGG 57.665 47.619 21.32 6.29 46.52 2.69
2060 2876 1.122019 AGGTGTGTCTCCCTGGTCAC 61.122 60.000 0.00 0.00 0.00 3.67
2073 2889 5.389520 TCCCTGGTCACATTTTGTTCAATA 58.610 37.500 0.00 0.00 0.00 1.90
2116 2932 3.512680 GTTGGACCACTCATAAGACTCG 58.487 50.000 0.00 0.00 0.00 4.18
2118 2934 3.959293 TGGACCACTCATAAGACTCGTA 58.041 45.455 0.00 0.00 0.00 3.43
2119 2935 3.693085 TGGACCACTCATAAGACTCGTAC 59.307 47.826 0.00 0.00 0.00 3.67
2121 2937 3.603532 ACCACTCATAAGACTCGTACGA 58.396 45.455 18.41 18.41 0.00 3.43
2122 2938 3.373439 ACCACTCATAAGACTCGTACGAC 59.627 47.826 15.28 5.75 0.00 4.34
2124 2940 3.622163 CACTCATAAGACTCGTACGACCT 59.378 47.826 15.28 11.54 0.00 3.85
2125 2941 3.622163 ACTCATAAGACTCGTACGACCTG 59.378 47.826 15.28 7.71 0.00 4.00
2126 2942 3.865446 TCATAAGACTCGTACGACCTGA 58.135 45.455 15.28 8.09 0.00 3.86
2127 2943 4.256110 TCATAAGACTCGTACGACCTGAA 58.744 43.478 15.28 7.18 0.00 3.02
2128 2944 4.696877 TCATAAGACTCGTACGACCTGAAA 59.303 41.667 15.28 4.92 0.00 2.69
2129 2945 5.356190 TCATAAGACTCGTACGACCTGAAAT 59.644 40.000 15.28 6.81 0.00 2.17
2130 2946 3.489180 AGACTCGTACGACCTGAAATG 57.511 47.619 15.28 4.53 0.00 2.32
2131 2947 3.079578 AGACTCGTACGACCTGAAATGA 58.920 45.455 15.28 0.00 0.00 2.57
2132 2948 3.119919 AGACTCGTACGACCTGAAATGAC 60.120 47.826 15.28 2.64 0.00 3.06
2133 2949 2.818432 ACTCGTACGACCTGAAATGACT 59.182 45.455 15.28 0.00 0.00 3.41
2134 2950 3.255149 ACTCGTACGACCTGAAATGACTT 59.745 43.478 15.28 0.00 0.00 3.01
2135 2951 3.829948 TCGTACGACCTGAAATGACTTC 58.170 45.455 15.28 0.00 34.31 3.01
2136 2952 2.592897 CGTACGACCTGAAATGACTTCG 59.407 50.000 10.44 0.00 36.78 3.79
2137 2953 2.080286 ACGACCTGAAATGACTTCGG 57.920 50.000 0.00 0.00 39.78 4.30
2138 2954 1.616865 ACGACCTGAAATGACTTCGGA 59.383 47.619 0.00 0.00 42.31 4.55
2139 2955 2.233922 ACGACCTGAAATGACTTCGGAT 59.766 45.455 0.00 0.00 42.31 4.18
2140 2956 2.604914 CGACCTGAAATGACTTCGGATG 59.395 50.000 0.00 0.00 42.31 3.51
2141 2957 3.676049 CGACCTGAAATGACTTCGGATGA 60.676 47.826 0.00 0.00 42.31 2.92
2142 2958 4.446371 GACCTGAAATGACTTCGGATGAT 58.554 43.478 0.00 0.00 42.31 2.45
2143 2959 5.601662 GACCTGAAATGACTTCGGATGATA 58.398 41.667 0.00 0.00 42.31 2.15
2144 2960 6.179906 ACCTGAAATGACTTCGGATGATAT 57.820 37.500 0.00 0.00 42.31 1.63
2145 2961 7.303182 ACCTGAAATGACTTCGGATGATATA 57.697 36.000 0.00 0.00 42.31 0.86
2146 2962 7.735917 ACCTGAAATGACTTCGGATGATATAA 58.264 34.615 0.00 0.00 42.31 0.98
2147 2963 7.657761 ACCTGAAATGACTTCGGATGATATAAC 59.342 37.037 0.00 0.00 42.31 1.89
2148 2964 7.875041 CCTGAAATGACTTCGGATGATATAACT 59.125 37.037 0.00 0.00 42.31 2.24
2149 2965 9.265901 CTGAAATGACTTCGGATGATATAACTT 57.734 33.333 0.00 0.00 42.31 2.66
2150 2966 9.261180 TGAAATGACTTCGGATGATATAACTTC 57.739 33.333 0.00 0.00 36.78 3.01
2151 2967 8.608844 AAATGACTTCGGATGATATAACTTCC 57.391 34.615 5.18 5.18 0.00 3.46
2152 2968 6.978674 TGACTTCGGATGATATAACTTCCT 57.021 37.500 11.59 0.00 33.65 3.36
2153 2969 8.651589 ATGACTTCGGATGATATAACTTCCTA 57.348 34.615 11.59 0.62 33.65 2.94
2154 2970 8.473358 TGACTTCGGATGATATAACTTCCTAA 57.527 34.615 11.59 7.28 33.65 2.69
2155 2971 8.920174 TGACTTCGGATGATATAACTTCCTAAA 58.080 33.333 11.59 6.47 33.65 1.85
2156 2972 9.930693 GACTTCGGATGATATAACTTCCTAAAT 57.069 33.333 11.59 0.00 33.65 1.40
2157 2973 9.712305 ACTTCGGATGATATAACTTCCTAAATG 57.288 33.333 11.59 2.13 33.65 2.32
2158 2974 8.547967 TTCGGATGATATAACTTCCTAAATGC 57.452 34.615 11.59 0.00 33.65 3.56
2159 2975 7.907389 TCGGATGATATAACTTCCTAAATGCT 58.093 34.615 11.59 0.00 33.65 3.79
2160 2976 9.031537 TCGGATGATATAACTTCCTAAATGCTA 57.968 33.333 11.59 0.00 33.65 3.49
2161 2977 9.823647 CGGATGATATAACTTCCTAAATGCTAT 57.176 33.333 11.59 0.00 33.65 2.97
2170 2986 8.950208 AACTTCCTAAATGCTATAGAACTGAC 57.050 34.615 3.21 0.00 0.00 3.51
2171 2987 7.203910 ACTTCCTAAATGCTATAGAACTGACG 58.796 38.462 3.21 0.00 0.00 4.35
2172 2988 5.529791 TCCTAAATGCTATAGAACTGACGC 58.470 41.667 3.21 0.00 0.00 5.19
2173 2989 4.686554 CCTAAATGCTATAGAACTGACGCC 59.313 45.833 3.21 0.00 0.00 5.68
2174 2990 3.819564 AATGCTATAGAACTGACGCCA 57.180 42.857 3.21 0.00 0.00 5.69
2175 2991 2.871182 TGCTATAGAACTGACGCCAG 57.129 50.000 3.21 0.00 45.76 4.85
2176 2992 2.375146 TGCTATAGAACTGACGCCAGA 58.625 47.619 5.48 0.00 43.02 3.86
2177 2993 2.959030 TGCTATAGAACTGACGCCAGAT 59.041 45.455 5.48 0.00 43.02 2.90
2178 2994 3.384789 TGCTATAGAACTGACGCCAGATT 59.615 43.478 5.48 0.00 43.02 2.40
2179 2995 4.141937 TGCTATAGAACTGACGCCAGATTT 60.142 41.667 5.48 0.00 43.02 2.17
2180 2996 4.811557 GCTATAGAACTGACGCCAGATTTT 59.188 41.667 5.48 0.00 43.02 1.82
2181 2997 5.294552 GCTATAGAACTGACGCCAGATTTTT 59.705 40.000 5.48 0.00 43.02 1.94
2182 2998 6.479001 GCTATAGAACTGACGCCAGATTTTTA 59.521 38.462 5.48 0.00 43.02 1.52
2183 2999 7.011109 GCTATAGAACTGACGCCAGATTTTTAA 59.989 37.037 5.48 0.00 43.02 1.52
2184 3000 5.613358 AGAACTGACGCCAGATTTTTAAG 57.387 39.130 5.48 0.00 43.02 1.85
2185 3001 3.831715 ACTGACGCCAGATTTTTAAGC 57.168 42.857 5.48 0.00 43.02 3.09
2186 3002 3.146066 ACTGACGCCAGATTTTTAAGCA 58.854 40.909 5.48 0.00 43.02 3.91
2187 3003 3.568007 ACTGACGCCAGATTTTTAAGCAA 59.432 39.130 5.48 0.00 43.02 3.91
2188 3004 4.218417 ACTGACGCCAGATTTTTAAGCAAT 59.782 37.500 5.48 0.00 43.02 3.56
2189 3005 4.732784 TGACGCCAGATTTTTAAGCAATC 58.267 39.130 0.00 2.56 0.00 2.67
2190 3006 4.105486 GACGCCAGATTTTTAAGCAATCC 58.895 43.478 6.05 0.00 31.86 3.01
2191 3007 3.108144 CGCCAGATTTTTAAGCAATCCG 58.892 45.455 6.05 1.39 31.86 4.18
2192 3008 3.181501 CGCCAGATTTTTAAGCAATCCGA 60.182 43.478 6.05 0.00 31.86 4.55
2193 3009 4.674101 CGCCAGATTTTTAAGCAATCCGAA 60.674 41.667 6.05 0.00 31.86 4.30
2194 3010 4.562789 GCCAGATTTTTAAGCAATCCGAAC 59.437 41.667 6.05 0.00 31.86 3.95
2195 3011 5.622233 GCCAGATTTTTAAGCAATCCGAACT 60.622 40.000 6.05 0.00 31.86 3.01
2196 3012 6.404293 GCCAGATTTTTAAGCAATCCGAACTA 60.404 38.462 6.05 0.00 31.86 2.24
2197 3013 7.535139 CCAGATTTTTAAGCAATCCGAACTAA 58.465 34.615 6.05 0.00 31.86 2.24
2198 3014 7.484959 CCAGATTTTTAAGCAATCCGAACTAAC 59.515 37.037 6.05 0.00 31.86 2.34
2199 3015 8.020819 CAGATTTTTAAGCAATCCGAACTAACA 58.979 33.333 6.05 0.00 31.86 2.41
2200 3016 8.021396 AGATTTTTAAGCAATCCGAACTAACAC 58.979 33.333 6.05 0.00 31.86 3.32
2201 3017 5.616488 TTTAAGCAATCCGAACTAACACC 57.384 39.130 0.00 0.00 0.00 4.16
2202 3018 2.109425 AGCAATCCGAACTAACACCC 57.891 50.000 0.00 0.00 0.00 4.61
2203 3019 1.628846 AGCAATCCGAACTAACACCCT 59.371 47.619 0.00 0.00 0.00 4.34
2204 3020 2.007608 GCAATCCGAACTAACACCCTC 58.992 52.381 0.00 0.00 0.00 4.30
2205 3021 2.614481 GCAATCCGAACTAACACCCTCA 60.614 50.000 0.00 0.00 0.00 3.86
2206 3022 3.262420 CAATCCGAACTAACACCCTCAG 58.738 50.000 0.00 0.00 0.00 3.35
2207 3023 1.263356 TCCGAACTAACACCCTCAGG 58.737 55.000 0.00 0.00 40.04 3.86
2208 3024 0.391263 CCGAACTAACACCCTCAGGC 60.391 60.000 0.00 0.00 36.11 4.85
2209 3025 0.320374 CGAACTAACACCCTCAGGCA 59.680 55.000 0.00 0.00 36.11 4.75
2210 3026 1.809684 GAACTAACACCCTCAGGCAC 58.190 55.000 0.00 0.00 36.11 5.01
2211 3027 0.034896 AACTAACACCCTCAGGCACG 59.965 55.000 0.00 0.00 36.11 5.34
2212 3028 1.119574 ACTAACACCCTCAGGCACGT 61.120 55.000 0.00 0.00 36.11 4.49
2213 3029 0.389948 CTAACACCCTCAGGCACGTC 60.390 60.000 0.00 0.00 36.11 4.34
2214 3030 2.149803 TAACACCCTCAGGCACGTCG 62.150 60.000 0.00 0.00 36.11 5.12
2215 3031 4.742201 CACCCTCAGGCACGTCGG 62.742 72.222 0.00 0.00 36.11 4.79
2216 3032 4.988716 ACCCTCAGGCACGTCGGA 62.989 66.667 0.00 0.00 36.11 4.55
2217 3033 3.461773 CCCTCAGGCACGTCGGAT 61.462 66.667 0.00 0.00 0.00 4.18
2218 3034 2.125326 CCCTCAGGCACGTCGGATA 61.125 63.158 0.00 0.00 0.00 2.59
2219 3035 1.065928 CCTCAGGCACGTCGGATAC 59.934 63.158 0.00 0.00 0.00 2.24
2220 3036 1.065928 CTCAGGCACGTCGGATACC 59.934 63.158 0.00 0.00 0.00 2.73
2221 3037 1.663379 CTCAGGCACGTCGGATACCA 61.663 60.000 0.00 0.00 0.00 3.25
2222 3038 1.518572 CAGGCACGTCGGATACCAC 60.519 63.158 0.00 0.00 0.00 4.16
2223 3039 1.980232 AGGCACGTCGGATACCACA 60.980 57.895 0.00 0.00 0.00 4.17
2224 3040 1.808390 GGCACGTCGGATACCACAC 60.808 63.158 0.00 0.00 0.00 3.82
2225 3041 1.080366 GCACGTCGGATACCACACA 60.080 57.895 0.00 0.00 0.00 3.72
2226 3042 1.349259 GCACGTCGGATACCACACAC 61.349 60.000 0.00 0.00 0.00 3.82
2227 3043 1.068832 CACGTCGGATACCACACACG 61.069 60.000 0.00 0.00 0.00 4.49
2228 3044 1.236616 ACGTCGGATACCACACACGA 61.237 55.000 0.00 0.00 0.00 4.35
2229 3045 0.109643 CGTCGGATACCACACACGAA 60.110 55.000 0.00 0.00 35.17 3.85
2230 3046 1.468565 CGTCGGATACCACACACGAAT 60.469 52.381 0.00 0.00 35.17 3.34
2231 3047 2.190981 GTCGGATACCACACACGAATC 58.809 52.381 0.00 0.00 35.17 2.52
2232 3048 1.135527 TCGGATACCACACACGAATCC 59.864 52.381 0.00 0.00 34.08 3.01
2233 3049 1.136305 CGGATACCACACACGAATCCT 59.864 52.381 0.00 0.00 35.06 3.24
2234 3050 2.359848 CGGATACCACACACGAATCCTA 59.640 50.000 0.00 0.00 35.06 2.94
2235 3051 3.181484 CGGATACCACACACGAATCCTAA 60.181 47.826 0.00 0.00 35.06 2.69
2236 3052 4.678574 CGGATACCACACACGAATCCTAAA 60.679 45.833 0.00 0.00 35.06 1.85
2237 3053 4.809426 GGATACCACACACGAATCCTAAAG 59.191 45.833 0.00 0.00 34.51 1.85
2238 3054 2.423577 ACCACACACGAATCCTAAAGC 58.576 47.619 0.00 0.00 0.00 3.51
2239 3055 1.393539 CCACACACGAATCCTAAAGCG 59.606 52.381 0.00 0.00 0.00 4.68
2240 3056 2.066262 CACACACGAATCCTAAAGCGT 58.934 47.619 0.00 0.00 37.48 5.07
2241 3057 2.478894 CACACACGAATCCTAAAGCGTT 59.521 45.455 0.00 0.00 34.37 4.84
2242 3058 3.676172 CACACACGAATCCTAAAGCGTTA 59.324 43.478 0.00 0.00 34.37 3.18
2243 3059 3.924686 ACACACGAATCCTAAAGCGTTAG 59.075 43.478 11.95 11.95 37.12 2.34
2244 3060 2.928116 ACACGAATCCTAAAGCGTTAGC 59.072 45.455 13.28 0.16 45.58 3.09
2255 3071 2.882793 GCGTTAGCTCCCACGTATC 58.117 57.895 12.91 0.00 41.01 2.24
2256 3072 0.101759 GCGTTAGCTCCCACGTATCA 59.898 55.000 12.91 0.00 41.01 2.15
2257 3073 1.836383 CGTTAGCTCCCACGTATCAC 58.164 55.000 0.00 0.00 0.00 3.06
2267 3083 3.917870 CGTATCACGTCGGATGGC 58.082 61.111 1.77 0.00 36.74 4.40
2268 3084 1.660575 CGTATCACGTCGGATGGCC 60.661 63.158 0.00 0.00 36.74 5.36
2269 3085 1.740285 GTATCACGTCGGATGGCCT 59.260 57.895 3.32 0.00 0.00 5.19
2270 3086 0.104304 GTATCACGTCGGATGGCCTT 59.896 55.000 3.32 0.00 0.00 4.35
2271 3087 0.828022 TATCACGTCGGATGGCCTTT 59.172 50.000 3.32 0.00 0.00 3.11
2272 3088 0.828022 ATCACGTCGGATGGCCTTTA 59.172 50.000 3.32 0.00 0.00 1.85
2273 3089 0.108520 TCACGTCGGATGGCCTTTAC 60.109 55.000 3.32 0.00 0.00 2.01
2274 3090 0.390603 CACGTCGGATGGCCTTTACA 60.391 55.000 3.32 0.00 0.00 2.41
2275 3091 0.539986 ACGTCGGATGGCCTTTACAT 59.460 50.000 3.32 0.00 0.00 2.29
2276 3092 1.758280 ACGTCGGATGGCCTTTACATA 59.242 47.619 3.32 0.00 0.00 2.29
2277 3093 2.367567 ACGTCGGATGGCCTTTACATAT 59.632 45.455 3.32 0.00 0.00 1.78
2278 3094 3.575256 ACGTCGGATGGCCTTTACATATA 59.425 43.478 3.32 0.00 0.00 0.86
2279 3095 4.222145 ACGTCGGATGGCCTTTACATATAT 59.778 41.667 3.32 0.00 0.00 0.86
2280 3096 5.175859 CGTCGGATGGCCTTTACATATATT 58.824 41.667 3.32 0.00 0.00 1.28
2281 3097 5.642063 CGTCGGATGGCCTTTACATATATTT 59.358 40.000 3.32 0.00 0.00 1.40
2282 3098 6.148811 CGTCGGATGGCCTTTACATATATTTT 59.851 38.462 3.32 0.00 0.00 1.82
2283 3099 7.308348 CGTCGGATGGCCTTTACATATATTTTT 60.308 37.037 3.32 0.00 0.00 1.94
2284 3100 9.005777 GTCGGATGGCCTTTACATATATTTTTA 57.994 33.333 3.32 0.00 0.00 1.52
2285 3101 9.575868 TCGGATGGCCTTTACATATATTTTTAA 57.424 29.630 3.32 0.00 0.00 1.52
2308 3124 7.859325 AATATCTACTTTTTGGCATACACGT 57.141 32.000 0.00 0.00 0.00 4.49
2309 3125 7.859325 ATATCTACTTTTTGGCATACACGTT 57.141 32.000 0.00 0.00 0.00 3.99
2310 3126 5.351233 TCTACTTTTTGGCATACACGTTG 57.649 39.130 0.00 0.00 0.00 4.10
2311 3127 4.817464 TCTACTTTTTGGCATACACGTTGT 59.183 37.500 0.00 0.00 0.00 3.32
2312 3128 3.701241 ACTTTTTGGCATACACGTTGTG 58.299 40.909 0.00 0.00 39.75 3.33
2313 3129 2.126914 TTTTGGCATACACGTTGTGC 57.873 45.000 7.78 7.78 36.98 4.57
2314 3130 1.025041 TTTGGCATACACGTTGTGCA 58.975 45.000 15.74 0.00 40.53 4.57
2315 3131 1.242989 TTGGCATACACGTTGTGCAT 58.757 45.000 15.74 0.00 40.53 3.96
2316 3132 1.242989 TGGCATACACGTTGTGCATT 58.757 45.000 15.74 0.00 40.53 3.56
2317 3133 1.611006 TGGCATACACGTTGTGCATTT 59.389 42.857 15.74 0.00 40.53 2.32
2318 3134 2.250188 GGCATACACGTTGTGCATTTC 58.750 47.619 15.74 0.00 40.53 2.17
2319 3135 2.095263 GGCATACACGTTGTGCATTTCT 60.095 45.455 15.74 0.00 40.53 2.52
2320 3136 3.564511 GCATACACGTTGTGCATTTCTT 58.435 40.909 10.66 0.00 36.98 2.52
2321 3137 3.361644 GCATACACGTTGTGCATTTCTTG 59.638 43.478 10.66 0.00 36.98 3.02
2322 3138 4.536065 CATACACGTTGTGCATTTCTTGT 58.464 39.130 0.00 0.00 36.98 3.16
2323 3139 5.684850 CATACACGTTGTGCATTTCTTGTA 58.315 37.500 0.00 0.00 36.98 2.41
2324 3140 4.829064 ACACGTTGTGCATTTCTTGTAT 57.171 36.364 0.00 0.00 36.98 2.29
2325 3141 5.933187 ACACGTTGTGCATTTCTTGTATA 57.067 34.783 0.00 0.00 36.98 1.47
2326 3142 5.685841 ACACGTTGTGCATTTCTTGTATAC 58.314 37.500 0.00 0.00 36.98 1.47
2327 3143 5.237561 ACACGTTGTGCATTTCTTGTATACA 59.762 36.000 0.08 0.08 36.98 2.29
2328 3144 6.072728 ACACGTTGTGCATTTCTTGTATACAT 60.073 34.615 6.36 0.00 36.98 2.29
2329 3145 6.465781 CACGTTGTGCATTTCTTGTATACATC 59.534 38.462 6.36 0.00 0.00 3.06
2330 3146 6.148645 ACGTTGTGCATTTCTTGTATACATCA 59.851 34.615 6.36 0.00 0.00 3.07
2331 3147 6.465781 CGTTGTGCATTTCTTGTATACATCAC 59.534 38.462 6.36 7.12 0.00 3.06
2332 3148 6.105657 TGTGCATTTCTTGTATACATCACG 57.894 37.500 6.36 0.00 0.00 4.35
2333 3149 5.872070 TGTGCATTTCTTGTATACATCACGA 59.128 36.000 6.36 0.00 0.00 4.35
2334 3150 6.370166 TGTGCATTTCTTGTATACATCACGAA 59.630 34.615 6.36 5.09 0.00 3.85
2335 3151 7.065683 TGTGCATTTCTTGTATACATCACGAAT 59.934 33.333 6.36 1.30 0.00 3.34
2336 3152 8.547894 GTGCATTTCTTGTATACATCACGAATA 58.452 33.333 6.36 0.00 0.00 1.75
2337 3153 9.103861 TGCATTTCTTGTATACATCACGAATAA 57.896 29.630 6.36 0.00 0.00 1.40
2355 3171 9.961266 CACGAATAATTTTTATAGACACGTTCA 57.039 29.630 0.00 0.00 0.00 3.18
2363 3179 9.959749 ATTTTTATAGACACGTTCAACATTTGT 57.040 25.926 0.00 0.00 0.00 2.83
2370 3186 7.921787 AGACACGTTCAACATTTGTAAATACA 58.078 30.769 0.00 0.00 0.00 2.29
2371 3187 8.564574 AGACACGTTCAACATTTGTAAATACAT 58.435 29.630 0.00 0.00 35.89 2.29
2372 3188 8.500837 ACACGTTCAACATTTGTAAATACATG 57.499 30.769 0.00 0.00 35.89 3.21
2373 3189 8.346300 ACACGTTCAACATTTGTAAATACATGA 58.654 29.630 0.00 0.00 35.89 3.07
2374 3190 9.340695 CACGTTCAACATTTGTAAATACATGAT 57.659 29.630 0.00 0.00 35.89 2.45
2375 3191 9.906660 ACGTTCAACATTTGTAAATACATGATT 57.093 25.926 0.00 0.00 35.89 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 230 2.726821 AGTTGTAGCCATCACCATTGG 58.273 47.619 0.00 0.00 37.31 3.16
379 381 2.895404 ACACCGGAGCTTCAACTAGTAA 59.105 45.455 9.46 0.00 0.00 2.24
581 616 1.343465 AGGGTTCAGTGGTTGACGTAG 59.657 52.381 0.00 0.00 34.94 3.51
582 617 1.416243 AGGGTTCAGTGGTTGACGTA 58.584 50.000 0.00 0.00 34.94 3.57
583 618 1.343465 CTAGGGTTCAGTGGTTGACGT 59.657 52.381 0.00 0.00 34.94 4.34
584 619 1.616865 TCTAGGGTTCAGTGGTTGACG 59.383 52.381 0.00 0.00 34.94 4.35
585 620 3.008049 ACATCTAGGGTTCAGTGGTTGAC 59.992 47.826 0.00 0.00 34.94 3.18
586 621 3.248024 ACATCTAGGGTTCAGTGGTTGA 58.752 45.455 0.00 0.00 0.00 3.18
587 622 3.703001 ACATCTAGGGTTCAGTGGTTG 57.297 47.619 0.00 0.00 0.00 3.77
588 623 3.009143 GGAACATCTAGGGTTCAGTGGTT 59.991 47.826 21.69 0.00 44.96 3.67
589 624 2.572104 GGAACATCTAGGGTTCAGTGGT 59.428 50.000 21.69 0.00 44.96 4.16
590 625 2.092914 GGGAACATCTAGGGTTCAGTGG 60.093 54.545 21.69 0.00 44.96 4.00
591 626 2.418746 CGGGAACATCTAGGGTTCAGTG 60.419 54.545 21.69 11.73 44.96 3.66
592 627 1.831736 CGGGAACATCTAGGGTTCAGT 59.168 52.381 21.69 0.00 44.96 3.41
593 628 2.101582 CTCGGGAACATCTAGGGTTCAG 59.898 54.545 21.69 16.74 44.96 3.02
594 629 2.108168 CTCGGGAACATCTAGGGTTCA 58.892 52.381 21.69 7.89 44.96 3.18
595 630 2.101082 GTCTCGGGAACATCTAGGGTTC 59.899 54.545 15.63 15.63 42.99 3.62
596 631 2.108970 GTCTCGGGAACATCTAGGGTT 58.891 52.381 0.00 1.05 0.00 4.11
597 632 1.006758 TGTCTCGGGAACATCTAGGGT 59.993 52.381 0.00 0.00 0.00 4.34
598 633 1.776662 TGTCTCGGGAACATCTAGGG 58.223 55.000 0.00 0.00 0.00 3.53
599 634 3.722147 CATTGTCTCGGGAACATCTAGG 58.278 50.000 0.00 0.00 0.00 3.02
600 635 3.126831 GCATTGTCTCGGGAACATCTAG 58.873 50.000 0.00 0.00 0.00 2.43
601 636 2.766263 AGCATTGTCTCGGGAACATCTA 59.234 45.455 0.00 0.00 0.00 1.98
602 637 1.556911 AGCATTGTCTCGGGAACATCT 59.443 47.619 0.00 0.00 0.00 2.90
603 638 1.936547 GAGCATTGTCTCGGGAACATC 59.063 52.381 0.00 0.00 0.00 3.06
604 639 1.407437 GGAGCATTGTCTCGGGAACAT 60.407 52.381 0.00 0.00 33.98 2.71
605 640 0.036388 GGAGCATTGTCTCGGGAACA 60.036 55.000 0.00 0.00 33.98 3.18
606 641 0.250513 AGGAGCATTGTCTCGGGAAC 59.749 55.000 0.00 0.00 33.98 3.62
607 642 0.984230 AAGGAGCATTGTCTCGGGAA 59.016 50.000 0.00 0.00 33.98 3.97
608 643 0.537188 GAAGGAGCATTGTCTCGGGA 59.463 55.000 0.00 0.00 33.98 5.14
609 644 0.539051 AGAAGGAGCATTGTCTCGGG 59.461 55.000 0.00 0.00 33.98 5.14
610 645 1.480137 AGAGAAGGAGCATTGTCTCGG 59.520 52.381 0.00 0.00 41.16 4.63
611 646 2.928757 CAAGAGAAGGAGCATTGTCTCG 59.071 50.000 0.00 0.00 41.16 4.04
612 647 2.677337 GCAAGAGAAGGAGCATTGTCTC 59.323 50.000 0.00 0.00 32.05 3.36
613 648 2.305343 AGCAAGAGAAGGAGCATTGTCT 59.695 45.455 0.00 0.00 34.50 3.41
614 649 2.709213 AGCAAGAGAAGGAGCATTGTC 58.291 47.619 0.00 0.00 0.00 3.18
615 650 2.875094 AGCAAGAGAAGGAGCATTGT 57.125 45.000 0.00 0.00 0.00 2.71
616 651 4.005650 TGTTAGCAAGAGAAGGAGCATTG 58.994 43.478 0.00 0.00 0.00 2.82
617 652 4.260170 CTGTTAGCAAGAGAAGGAGCATT 58.740 43.478 0.00 0.00 0.00 3.56
618 653 3.871485 CTGTTAGCAAGAGAAGGAGCAT 58.129 45.455 0.00 0.00 0.00 3.79
619 654 2.613977 GCTGTTAGCAAGAGAAGGAGCA 60.614 50.000 0.00 0.00 41.89 4.26
620 655 2.006169 GCTGTTAGCAAGAGAAGGAGC 58.994 52.381 0.00 0.00 41.89 4.70
621 656 3.608316 AGCTGTTAGCAAGAGAAGGAG 57.392 47.619 3.43 0.00 45.56 3.69
622 657 4.067896 CAAAGCTGTTAGCAAGAGAAGGA 58.932 43.478 3.43 0.00 45.56 3.36
623 658 4.067896 TCAAAGCTGTTAGCAAGAGAAGG 58.932 43.478 3.43 0.00 45.56 3.46
624 659 5.876612 ATCAAAGCTGTTAGCAAGAGAAG 57.123 39.130 3.43 0.00 45.56 2.85
625 660 6.467677 AGTATCAAAGCTGTTAGCAAGAGAA 58.532 36.000 3.43 0.00 45.56 2.87
626 661 6.042638 AGTATCAAAGCTGTTAGCAAGAGA 57.957 37.500 3.43 0.00 45.56 3.10
627 662 6.105333 AGAGTATCAAAGCTGTTAGCAAGAG 58.895 40.000 3.43 0.00 40.52 2.85
628 663 6.042638 AGAGTATCAAAGCTGTTAGCAAGA 57.957 37.500 3.43 0.00 40.52 3.02
629 664 6.369890 TGAAGAGTATCAAAGCTGTTAGCAAG 59.630 38.462 3.43 0.00 40.52 4.01
630 665 6.230472 TGAAGAGTATCAAAGCTGTTAGCAA 58.770 36.000 3.43 0.00 40.52 3.91
631 666 5.793817 TGAAGAGTATCAAAGCTGTTAGCA 58.206 37.500 3.43 0.00 40.52 3.49
632 667 6.917217 ATGAAGAGTATCAAAGCTGTTAGC 57.083 37.500 0.00 0.00 38.79 3.09
635 670 9.050601 GCTTATATGAAGAGTATCAAAGCTGTT 57.949 33.333 0.00 0.00 37.55 3.16
636 671 7.659390 GGCTTATATGAAGAGTATCAAAGCTGT 59.341 37.037 10.33 0.00 39.20 4.40
637 672 7.118971 GGGCTTATATGAAGAGTATCAAAGCTG 59.881 40.741 10.33 0.00 39.20 4.24
638 673 7.164803 GGGCTTATATGAAGAGTATCAAAGCT 58.835 38.462 10.33 0.00 39.20 3.74
639 674 6.372937 GGGGCTTATATGAAGAGTATCAAAGC 59.627 42.308 0.00 0.00 38.81 3.51
640 675 7.684529 AGGGGCTTATATGAAGAGTATCAAAG 58.315 38.462 0.00 0.00 37.82 2.77
641 676 7.633018 AGGGGCTTATATGAAGAGTATCAAA 57.367 36.000 0.00 0.00 37.82 2.69
642 677 7.633018 AAGGGGCTTATATGAAGAGTATCAA 57.367 36.000 0.00 0.00 37.82 2.57
643 678 7.633018 AAAGGGGCTTATATGAAGAGTATCA 57.367 36.000 0.00 0.00 37.82 2.15
644 679 8.379331 AGAAAAGGGGCTTATATGAAGAGTATC 58.621 37.037 0.00 0.00 0.00 2.24
645 680 8.281529 AGAAAAGGGGCTTATATGAAGAGTAT 57.718 34.615 0.00 0.00 0.00 2.12
646 681 7.471539 CGAGAAAAGGGGCTTATATGAAGAGTA 60.472 40.741 0.00 0.00 0.00 2.59
647 682 6.582929 AGAAAAGGGGCTTATATGAAGAGT 57.417 37.500 0.00 0.00 0.00 3.24
648 683 5.698545 CGAGAAAAGGGGCTTATATGAAGAG 59.301 44.000 0.00 0.00 0.00 2.85
649 684 5.130477 ACGAGAAAAGGGGCTTATATGAAGA 59.870 40.000 0.00 0.00 0.00 2.87
650 685 5.368989 ACGAGAAAAGGGGCTTATATGAAG 58.631 41.667 0.00 0.00 0.00 3.02
651 686 5.130477 AGACGAGAAAAGGGGCTTATATGAA 59.870 40.000 0.00 0.00 0.00 2.57
652 687 4.654262 AGACGAGAAAAGGGGCTTATATGA 59.346 41.667 0.00 0.00 0.00 2.15
653 688 4.962155 AGACGAGAAAAGGGGCTTATATG 58.038 43.478 0.00 0.00 0.00 1.78
657 692 1.203994 CGAGACGAGAAAAGGGGCTTA 59.796 52.381 0.00 0.00 0.00 3.09
662 697 1.669211 GGTGACGAGACGAGAAAAGGG 60.669 57.143 0.00 0.00 0.00 3.95
758 799 2.207590 GCATCATCGATCAGTTGAGCA 58.792 47.619 0.00 0.00 32.65 4.26
763 804 2.847441 AGCATGCATCATCGATCAGTT 58.153 42.857 21.98 0.00 0.00 3.16
819 863 1.084289 AAACTCTTATTCCCGCACGC 58.916 50.000 0.00 0.00 0.00 5.34
820 864 2.343101 TCAAACTCTTATTCCCGCACG 58.657 47.619 0.00 0.00 0.00 5.34
823 867 2.603560 CGTCTCAAACTCTTATTCCCGC 59.396 50.000 0.00 0.00 0.00 6.13
830 874 5.524971 TCAGTTTCCGTCTCAAACTCTTA 57.475 39.130 0.00 0.00 41.25 2.10
875 919 3.454375 CTTACCGTGTCCGAATTAGCAT 58.546 45.455 0.00 0.00 35.63 3.79
876 920 2.417651 CCTTACCGTGTCCGAATTAGCA 60.418 50.000 0.00 0.00 35.63 3.49
939 986 4.781071 GCTTTGATAGCTTGATTCCATCG 58.219 43.478 0.00 0.00 46.77 3.84
989 1036 4.202535 TGGAGATACTCATCGTTAGGGCTA 60.203 45.833 0.00 0.00 36.20 3.93
990 1037 3.158676 GGAGATACTCATCGTTAGGGCT 58.841 50.000 0.00 0.00 36.20 5.19
991 1038 2.891580 TGGAGATACTCATCGTTAGGGC 59.108 50.000 0.00 0.00 36.20 5.19
1001 1049 2.694397 CCCCTTCCATGGAGATACTCA 58.306 52.381 15.53 0.00 31.08 3.41
1002 1050 1.981495 CCCCCTTCCATGGAGATACTC 59.019 57.143 15.53 0.00 0.00 2.59
1003 1051 2.124560 CCCCCTTCCATGGAGATACT 57.875 55.000 15.53 0.00 0.00 2.12
1092 1151 2.358125 TCATGGCAACCACCGACG 60.358 61.111 0.00 0.00 35.80 5.12
1158 1217 2.280389 CCGTCGGCCATGGATCTG 60.280 66.667 18.40 3.55 31.73 2.90
1287 1352 3.599584 CGCCACTCGTCCTCCTTA 58.400 61.111 0.00 0.00 0.00 2.69
1339 1416 1.062734 TGTCCACCATCTATACCCCGT 60.063 52.381 0.00 0.00 0.00 5.28
1359 1436 3.777106 TCTTCACAGTTCTTCATGCCT 57.223 42.857 0.00 0.00 0.00 4.75
1419 1508 1.667724 CGTCATGCTGGGTGAAAGATC 59.332 52.381 0.00 0.00 0.00 2.75
1421 1510 0.321564 CCGTCATGCTGGGTGAAAGA 60.322 55.000 0.00 0.00 0.00 2.52
1434 1523 6.105397 TCTAAACCAAGTTAACTCCGTCAT 57.895 37.500 8.95 4.09 0.00 3.06
1435 1524 5.510179 CCTCTAAACCAAGTTAACTCCGTCA 60.510 44.000 8.95 0.01 0.00 4.35
1437 1526 4.346127 ACCTCTAAACCAAGTTAACTCCGT 59.654 41.667 8.95 5.17 0.00 4.69
1438 1527 4.891260 ACCTCTAAACCAAGTTAACTCCG 58.109 43.478 8.95 4.50 0.00 4.63
1456 1558 5.416271 TGACAGTTGGTCCTAATAACCTC 57.584 43.478 0.00 0.00 46.38 3.85
1536 2318 8.655288 CAAAGGAATTGTTTGACACGACTAACG 61.655 40.741 4.49 0.00 41.11 3.18
1571 2353 7.928706 TCTGAAAAACAAACTGAAAGGAAAACA 59.071 29.630 0.00 0.00 39.30 2.83
1582 2364 7.594758 TCAACTTTCAGTCTGAAAAACAAACTG 59.405 33.333 24.54 14.66 44.69 3.16
1588 2370 8.687824 TTGATTCAACTTTCAGTCTGAAAAAC 57.312 30.769 24.54 11.69 44.69 2.43
1591 2373 7.121168 ACACTTGATTCAACTTTCAGTCTGAAA 59.879 33.333 23.38 23.38 43.37 2.69
1594 2376 6.369059 ACACTTGATTCAACTTTCAGTCTG 57.631 37.500 0.00 0.00 0.00 3.51
1598 2380 5.657470 TCGACACTTGATTCAACTTTCAG 57.343 39.130 0.00 0.00 0.00 3.02
1602 2384 7.905604 TGAATATCGACACTTGATTCAACTT 57.094 32.000 0.00 0.00 34.46 2.66
1618 2400 2.328473 ACGTCGCCATCATGAATATCG 58.672 47.619 0.00 1.54 0.00 2.92
1622 2404 2.623416 TCTCTACGTCGCCATCATGAAT 59.377 45.455 0.00 0.00 0.00 2.57
1634 2416 6.038492 AGACTAAAGCTACCAATCTCTACGTC 59.962 42.308 0.00 0.00 0.00 4.34
1637 2419 6.461788 CCCAGACTAAAGCTACCAATCTCTAC 60.462 46.154 0.00 0.00 0.00 2.59
1663 2445 5.241506 CAGTTGATGCTTCTTAACCCTTGAA 59.758 40.000 0.88 0.00 0.00 2.69
1705 2487 3.328343 TCTTTATTTGTCTTGGGTCCCGA 59.672 43.478 2.65 0.00 0.00 5.14
1726 2509 9.719355 AACCCACAGTAAAAATAAAAATGGATC 57.281 29.630 0.00 0.00 0.00 3.36
1767 2550 0.252927 CCTCCCCTCACCTCTCCTTT 60.253 60.000 0.00 0.00 0.00 3.11
1777 2560 0.033405 CCTACGTTCTCCTCCCCTCA 60.033 60.000 0.00 0.00 0.00 3.86
1785 2568 0.248949 GCATCGACCCTACGTTCTCC 60.249 60.000 0.00 0.00 34.70 3.71
1787 2570 1.135083 CAAGCATCGACCCTACGTTCT 60.135 52.381 0.00 0.00 34.70 3.01
1792 2575 1.112113 TCTCCAAGCATCGACCCTAC 58.888 55.000 0.00 0.00 0.00 3.18
1794 2577 0.250513 GTTCTCCAAGCATCGACCCT 59.749 55.000 0.00 0.00 0.00 4.34
1801 2584 3.777106 TCAACTCTGTTCTCCAAGCAT 57.223 42.857 0.00 0.00 0.00 3.79
1816 2599 4.008330 CTCCAACAATGAGAGCATCAACT 58.992 43.478 0.00 0.00 42.53 3.16
1858 2659 2.078665 ACCACTGGCTGGGTGACTT 61.079 57.895 0.00 0.00 45.78 3.01
1868 2669 1.084289 GGAACGAATACACCACTGGC 58.916 55.000 0.00 0.00 0.00 4.85
1870 2671 5.068234 TCTAAGGAACGAATACACCACTG 57.932 43.478 0.00 0.00 0.00 3.66
1872 2681 4.809426 CCATCTAAGGAACGAATACACCAC 59.191 45.833 0.00 0.00 0.00 4.16
1879 2688 2.431057 AGCGTCCATCTAAGGAACGAAT 59.569 45.455 0.00 0.00 39.92 3.34
1882 2691 1.927174 CAAGCGTCCATCTAAGGAACG 59.073 52.381 0.00 0.00 39.92 3.95
1885 2694 2.457598 AGACAAGCGTCCATCTAAGGA 58.542 47.619 0.00 0.00 43.73 3.36
1888 2697 4.014406 TCAGTAGACAAGCGTCCATCTAA 58.986 43.478 0.00 0.00 43.73 2.10
1889 2698 3.617284 TCAGTAGACAAGCGTCCATCTA 58.383 45.455 0.00 0.00 43.73 1.98
1890 2699 2.425312 CTCAGTAGACAAGCGTCCATCT 59.575 50.000 0.00 0.00 43.73 2.90
1894 2703 2.288273 ACAACTCAGTAGACAAGCGTCC 60.288 50.000 0.00 0.00 43.73 4.79
1898 2707 2.329379 CGGACAACTCAGTAGACAAGC 58.671 52.381 0.00 0.00 0.00 4.01
1901 2710 0.601558 GCCGGACAACTCAGTAGACA 59.398 55.000 5.05 0.00 0.00 3.41
1919 2728 0.811616 CTGATAGTCAAGGCACCGGC 60.812 60.000 0.00 0.00 40.13 6.13
1921 2730 0.179073 CCCTGATAGTCAAGGCACCG 60.179 60.000 0.00 0.00 0.00 4.94
1922 2731 0.912486 ACCCTGATAGTCAAGGCACC 59.088 55.000 0.00 0.00 31.08 5.01
1923 2732 2.290323 ACAACCCTGATAGTCAAGGCAC 60.290 50.000 0.00 0.00 31.08 5.01
1924 2733 1.985159 ACAACCCTGATAGTCAAGGCA 59.015 47.619 0.00 0.00 31.08 4.75
1925 2734 2.359900 CACAACCCTGATAGTCAAGGC 58.640 52.381 0.00 0.00 31.08 4.35
1927 2736 3.338249 CACCACAACCCTGATAGTCAAG 58.662 50.000 0.00 0.00 0.00 3.02
1928 2737 2.039746 CCACCACAACCCTGATAGTCAA 59.960 50.000 0.00 0.00 0.00 3.18
1929 2738 1.628340 CCACCACAACCCTGATAGTCA 59.372 52.381 0.00 0.00 0.00 3.41
1930 2739 1.628846 ACCACCACAACCCTGATAGTC 59.371 52.381 0.00 0.00 0.00 2.59
1931 2740 1.742308 ACCACCACAACCCTGATAGT 58.258 50.000 0.00 0.00 0.00 2.12
1933 2742 1.777878 ACAACCACCACAACCCTGATA 59.222 47.619 0.00 0.00 0.00 2.15
1934 2743 0.555769 ACAACCACCACAACCCTGAT 59.444 50.000 0.00 0.00 0.00 2.90
1945 2754 4.853924 AAGAATCACAATCACAACCACC 57.146 40.909 0.00 0.00 0.00 4.61
1953 2762 9.730705 AGAACTGAAATCTAAGAATCACAATCA 57.269 29.630 0.00 0.00 0.00 2.57
1986 2802 7.053316 TCATTGGATCACAGTGAAAACAAAT 57.947 32.000 7.50 5.15 42.07 2.32
1987 2803 6.462552 TCATTGGATCACAGTGAAAACAAA 57.537 33.333 7.50 2.98 42.07 2.83
2001 2817 0.305922 CGCCGCTTCTTCATTGGATC 59.694 55.000 0.00 0.00 0.00 3.36
2012 2828 1.967597 GACTGCTAAACCGCCGCTTC 61.968 60.000 0.00 0.00 0.00 3.86
2017 2833 2.399356 GGCAGACTGCTAAACCGCC 61.399 63.158 25.92 3.86 44.28 6.13
2019 2835 0.798776 CAAGGCAGACTGCTAAACCG 59.201 55.000 25.92 6.45 44.28 4.44
2043 2859 0.687354 ATGTGACCAGGGAGACACAC 59.313 55.000 15.17 0.00 44.08 3.82
2051 2867 4.605640 ATTGAACAAAATGTGACCAGGG 57.394 40.909 0.00 0.00 0.00 4.45
2073 2889 8.585018 CCAACCCAATACTTGAAAACTAAGATT 58.415 33.333 0.00 0.00 0.00 2.40
2086 2902 2.714250 TGAGTGGTCCAACCCAATACTT 59.286 45.455 0.00 0.00 37.50 2.24
2093 2909 2.572104 AGTCTTATGAGTGGTCCAACCC 59.428 50.000 0.00 0.00 37.50 4.11
2096 2912 3.162666 ACGAGTCTTATGAGTGGTCCAA 58.837 45.455 0.00 0.00 30.37 3.53
2100 2916 3.373439 GTCGTACGAGTCTTATGAGTGGT 59.627 47.826 20.18 6.40 38.04 4.16
2102 2918 3.622163 AGGTCGTACGAGTCTTATGAGTG 59.378 47.826 20.18 0.00 0.00 3.51
2116 2932 2.921754 CCGAAGTCATTTCAGGTCGTAC 59.078 50.000 0.00 0.00 35.43 3.67
2118 2934 1.616865 TCCGAAGTCATTTCAGGTCGT 59.383 47.619 0.00 0.00 35.43 4.34
2119 2935 2.363788 TCCGAAGTCATTTCAGGTCG 57.636 50.000 0.00 0.00 35.43 4.79
2121 2937 3.981071 TCATCCGAAGTCATTTCAGGT 57.019 42.857 0.00 0.00 35.43 4.00
2122 2938 7.875041 AGTTATATCATCCGAAGTCATTTCAGG 59.125 37.037 0.00 0.00 35.43 3.86
2124 2940 9.261180 GAAGTTATATCATCCGAAGTCATTTCA 57.739 33.333 0.00 0.00 35.43 2.69
2125 2941 8.713271 GGAAGTTATATCATCCGAAGTCATTTC 58.287 37.037 0.00 0.00 0.00 2.17
2126 2942 8.432805 AGGAAGTTATATCATCCGAAGTCATTT 58.567 33.333 0.56 0.00 37.05 2.32
2127 2943 7.967908 AGGAAGTTATATCATCCGAAGTCATT 58.032 34.615 0.56 0.00 37.05 2.57
2128 2944 7.546250 AGGAAGTTATATCATCCGAAGTCAT 57.454 36.000 0.56 0.00 37.05 3.06
2129 2945 6.978674 AGGAAGTTATATCATCCGAAGTCA 57.021 37.500 0.56 0.00 37.05 3.41
2130 2946 9.930693 ATTTAGGAAGTTATATCATCCGAAGTC 57.069 33.333 0.56 0.00 37.05 3.01
2131 2947 9.712305 CATTTAGGAAGTTATATCATCCGAAGT 57.288 33.333 0.56 0.00 37.05 3.01
2132 2948 8.660373 GCATTTAGGAAGTTATATCATCCGAAG 58.340 37.037 0.56 0.00 37.05 3.79
2133 2949 8.375506 AGCATTTAGGAAGTTATATCATCCGAA 58.624 33.333 0.56 0.00 37.05 4.30
2134 2950 7.907389 AGCATTTAGGAAGTTATATCATCCGA 58.093 34.615 0.56 0.00 37.05 4.55
2135 2951 9.823647 ATAGCATTTAGGAAGTTATATCATCCG 57.176 33.333 0.56 0.00 37.05 4.18
2145 2961 7.707035 CGTCAGTTCTATAGCATTTAGGAAGTT 59.293 37.037 0.00 0.00 0.00 2.66
2146 2962 7.203910 CGTCAGTTCTATAGCATTTAGGAAGT 58.796 38.462 0.00 0.00 0.00 3.01
2147 2963 6.144724 GCGTCAGTTCTATAGCATTTAGGAAG 59.855 42.308 0.00 0.00 0.00 3.46
2148 2964 5.983720 GCGTCAGTTCTATAGCATTTAGGAA 59.016 40.000 0.00 0.00 0.00 3.36
2149 2965 5.509163 GGCGTCAGTTCTATAGCATTTAGGA 60.509 44.000 0.00 0.00 0.00 2.94
2150 2966 4.686554 GGCGTCAGTTCTATAGCATTTAGG 59.313 45.833 0.00 0.00 0.00 2.69
2151 2967 5.289595 TGGCGTCAGTTCTATAGCATTTAG 58.710 41.667 0.00 0.00 0.00 1.85
2152 2968 5.068591 TCTGGCGTCAGTTCTATAGCATTTA 59.931 40.000 18.04 0.00 41.59 1.40
2153 2969 4.122776 CTGGCGTCAGTTCTATAGCATTT 58.877 43.478 9.39 0.00 36.30 2.32
2154 2970 3.384789 TCTGGCGTCAGTTCTATAGCATT 59.615 43.478 18.04 0.00 41.59 3.56
2155 2971 2.959030 TCTGGCGTCAGTTCTATAGCAT 59.041 45.455 18.04 0.00 41.59 3.79
2156 2972 2.375146 TCTGGCGTCAGTTCTATAGCA 58.625 47.619 18.04 0.00 41.59 3.49
2157 2973 3.651803 ATCTGGCGTCAGTTCTATAGC 57.348 47.619 18.04 0.00 41.59 2.97
2158 2974 6.910536 AAAAATCTGGCGTCAGTTCTATAG 57.089 37.500 18.04 0.00 41.59 1.31
2159 2975 7.011109 GCTTAAAAATCTGGCGTCAGTTCTATA 59.989 37.037 18.04 3.87 41.59 1.31
2160 2976 6.183360 GCTTAAAAATCTGGCGTCAGTTCTAT 60.183 38.462 18.04 0.00 41.59 1.98
2161 2977 5.121768 GCTTAAAAATCTGGCGTCAGTTCTA 59.878 40.000 18.04 0.00 41.59 2.10
2162 2978 4.083271 GCTTAAAAATCTGGCGTCAGTTCT 60.083 41.667 18.04 0.00 41.59 3.01
2163 2979 4.159120 GCTTAAAAATCTGGCGTCAGTTC 58.841 43.478 18.04 0.00 41.59 3.01
2164 2980 3.568007 TGCTTAAAAATCTGGCGTCAGTT 59.432 39.130 18.04 5.72 41.59 3.16
2165 2981 3.146066 TGCTTAAAAATCTGGCGTCAGT 58.854 40.909 18.04 1.19 41.59 3.41
2166 2982 3.829886 TGCTTAAAAATCTGGCGTCAG 57.170 42.857 11.77 11.77 42.21 3.51
2167 2983 4.380444 GGATTGCTTAAAAATCTGGCGTCA 60.380 41.667 0.00 0.00 34.95 4.35
2168 2984 4.105486 GGATTGCTTAAAAATCTGGCGTC 58.895 43.478 9.32 0.00 34.95 5.19
2169 2985 3.427503 CGGATTGCTTAAAAATCTGGCGT 60.428 43.478 9.89 0.00 36.95 5.68
2170 2986 3.108144 CGGATTGCTTAAAAATCTGGCG 58.892 45.455 9.89 3.81 36.95 5.69
2171 2987 4.370364 TCGGATTGCTTAAAAATCTGGC 57.630 40.909 14.82 0.00 39.75 4.85
2172 2988 5.954335 AGTTCGGATTGCTTAAAAATCTGG 58.046 37.500 14.82 7.27 39.75 3.86
2173 2989 8.020819 TGTTAGTTCGGATTGCTTAAAAATCTG 58.979 33.333 10.95 10.95 40.38 2.90
2174 2990 8.021396 GTGTTAGTTCGGATTGCTTAAAAATCT 58.979 33.333 9.32 0.00 34.95 2.40
2175 2991 7.272731 GGTGTTAGTTCGGATTGCTTAAAAATC 59.727 37.037 3.08 3.08 34.00 2.17
2176 2992 7.088272 GGTGTTAGTTCGGATTGCTTAAAAAT 58.912 34.615 0.00 0.00 0.00 1.82
2177 2993 6.440436 GGTGTTAGTTCGGATTGCTTAAAAA 58.560 36.000 0.00 0.00 0.00 1.94
2178 2994 5.048573 GGGTGTTAGTTCGGATTGCTTAAAA 60.049 40.000 0.00 0.00 0.00 1.52
2179 2995 4.456566 GGGTGTTAGTTCGGATTGCTTAAA 59.543 41.667 0.00 0.00 0.00 1.52
2180 2996 4.004982 GGGTGTTAGTTCGGATTGCTTAA 58.995 43.478 0.00 0.00 0.00 1.85
2181 2997 3.262405 AGGGTGTTAGTTCGGATTGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
2182 2998 2.039879 AGGGTGTTAGTTCGGATTGCTT 59.960 45.455 0.00 0.00 0.00 3.91
2183 2999 1.628846 AGGGTGTTAGTTCGGATTGCT 59.371 47.619 0.00 0.00 0.00 3.91
2184 3000 2.007608 GAGGGTGTTAGTTCGGATTGC 58.992 52.381 0.00 0.00 0.00 3.56
2185 3001 3.262420 CTGAGGGTGTTAGTTCGGATTG 58.738 50.000 0.00 0.00 0.00 2.67
2186 3002 2.236395 CCTGAGGGTGTTAGTTCGGATT 59.764 50.000 0.00 0.00 0.00 3.01
2187 3003 1.831736 CCTGAGGGTGTTAGTTCGGAT 59.168 52.381 0.00 0.00 0.00 4.18
2188 3004 1.263356 CCTGAGGGTGTTAGTTCGGA 58.737 55.000 0.00 0.00 0.00 4.55
2189 3005 0.391263 GCCTGAGGGTGTTAGTTCGG 60.391 60.000 0.00 0.00 34.45 4.30
2190 3006 0.320374 TGCCTGAGGGTGTTAGTTCG 59.680 55.000 0.00 0.00 34.45 3.95
2191 3007 1.809684 GTGCCTGAGGGTGTTAGTTC 58.190 55.000 0.00 0.00 34.45 3.01
2192 3008 0.034896 CGTGCCTGAGGGTGTTAGTT 59.965 55.000 0.00 0.00 34.45 2.24
2193 3009 1.119574 ACGTGCCTGAGGGTGTTAGT 61.120 55.000 0.00 0.00 34.45 2.24
2194 3010 0.389948 GACGTGCCTGAGGGTGTTAG 60.390 60.000 0.00 0.00 34.45 2.34
2195 3011 1.669440 GACGTGCCTGAGGGTGTTA 59.331 57.895 0.00 0.00 34.45 2.41
2196 3012 2.426023 GACGTGCCTGAGGGTGTT 59.574 61.111 0.00 0.00 34.45 3.32
2197 3013 3.991051 CGACGTGCCTGAGGGTGT 61.991 66.667 0.00 0.00 34.45 4.16
2198 3014 4.742201 CCGACGTGCCTGAGGGTG 62.742 72.222 0.00 0.00 34.45 4.61
2199 3015 2.849096 TATCCGACGTGCCTGAGGGT 62.849 60.000 0.00 0.00 34.45 4.34
2200 3016 2.125326 TATCCGACGTGCCTGAGGG 61.125 63.158 0.00 0.00 0.00 4.30
2201 3017 1.065928 GTATCCGACGTGCCTGAGG 59.934 63.158 0.00 0.00 0.00 3.86
2202 3018 1.065928 GGTATCCGACGTGCCTGAG 59.934 63.158 0.00 0.00 0.00 3.35
2203 3019 1.679641 TGGTATCCGACGTGCCTGA 60.680 57.895 0.00 0.00 0.00 3.86
2204 3020 1.518572 GTGGTATCCGACGTGCCTG 60.519 63.158 0.00 0.00 0.00 4.85
2205 3021 1.980232 TGTGGTATCCGACGTGCCT 60.980 57.895 0.00 0.00 0.00 4.75
2206 3022 1.808390 GTGTGGTATCCGACGTGCC 60.808 63.158 0.00 0.00 0.00 5.01
2207 3023 1.080366 TGTGTGGTATCCGACGTGC 60.080 57.895 0.00 0.00 0.00 5.34
2208 3024 1.068832 CGTGTGTGGTATCCGACGTG 61.069 60.000 0.00 0.00 0.00 4.49
2209 3025 1.210931 CGTGTGTGGTATCCGACGT 59.789 57.895 0.00 0.00 0.00 4.34
2210 3026 0.109643 TTCGTGTGTGGTATCCGACG 60.110 55.000 0.00 0.00 0.00 5.12
2211 3027 2.190981 GATTCGTGTGTGGTATCCGAC 58.809 52.381 0.00 0.00 0.00 4.79
2212 3028 1.135527 GGATTCGTGTGTGGTATCCGA 59.864 52.381 0.00 0.00 0.00 4.55
2213 3029 1.136305 AGGATTCGTGTGTGGTATCCG 59.864 52.381 0.00 0.00 39.75 4.18
2214 3030 2.981859 AGGATTCGTGTGTGGTATCC 57.018 50.000 0.00 0.00 35.97 2.59
2215 3031 4.270325 GCTTTAGGATTCGTGTGTGGTATC 59.730 45.833 0.00 0.00 0.00 2.24
2216 3032 4.189231 GCTTTAGGATTCGTGTGTGGTAT 58.811 43.478 0.00 0.00 0.00 2.73
2217 3033 3.592059 GCTTTAGGATTCGTGTGTGGTA 58.408 45.455 0.00 0.00 0.00 3.25
2218 3034 2.423577 GCTTTAGGATTCGTGTGTGGT 58.576 47.619 0.00 0.00 0.00 4.16
2219 3035 1.393539 CGCTTTAGGATTCGTGTGTGG 59.606 52.381 0.00 0.00 0.00 4.17
2220 3036 2.066262 ACGCTTTAGGATTCGTGTGTG 58.934 47.619 0.00 0.00 33.59 3.82
2221 3037 2.450609 ACGCTTTAGGATTCGTGTGT 57.549 45.000 0.00 0.00 33.59 3.72
2222 3038 3.241995 GCTAACGCTTTAGGATTCGTGTG 60.242 47.826 11.53 0.00 36.02 3.82
2223 3039 2.928116 GCTAACGCTTTAGGATTCGTGT 59.072 45.455 11.53 0.00 36.02 4.49
2224 3040 3.187700 AGCTAACGCTTTAGGATTCGTG 58.812 45.455 11.53 0.00 46.47 4.35
2225 3041 3.521947 AGCTAACGCTTTAGGATTCGT 57.478 42.857 11.53 0.00 46.47 3.85
2237 3053 0.101759 TGATACGTGGGAGCTAACGC 59.898 55.000 14.09 3.69 43.49 4.84
2238 3054 1.836383 GTGATACGTGGGAGCTAACG 58.164 55.000 12.93 12.93 45.15 3.18
2239 3055 1.836383 CGTGATACGTGGGAGCTAAC 58.164 55.000 0.00 0.00 36.74 2.34
2250 3066 2.071844 AGGCCATCCGACGTGATACG 62.072 60.000 5.01 0.00 42.03 3.06
2251 3067 0.104304 AAGGCCATCCGACGTGATAC 59.896 55.000 5.01 0.00 37.47 2.24
2252 3068 0.828022 AAAGGCCATCCGACGTGATA 59.172 50.000 5.01 0.00 37.47 2.15
2253 3069 0.828022 TAAAGGCCATCCGACGTGAT 59.172 50.000 5.01 0.00 37.47 3.06
2254 3070 0.108520 GTAAAGGCCATCCGACGTGA 60.109 55.000 5.01 0.00 37.47 4.35
2255 3071 0.390603 TGTAAAGGCCATCCGACGTG 60.391 55.000 5.01 0.00 37.47 4.49
2256 3072 0.539986 ATGTAAAGGCCATCCGACGT 59.460 50.000 5.01 0.00 37.47 4.34
2257 3073 2.519377 TATGTAAAGGCCATCCGACG 57.481 50.000 5.01 0.00 37.47 5.12
2258 3074 7.448748 AAAATATATGTAAAGGCCATCCGAC 57.551 36.000 5.01 0.00 37.47 4.79
2259 3075 9.575868 TTAAAAATATATGTAAAGGCCATCCGA 57.424 29.630 5.01 0.00 37.47 4.55
2282 3098 9.386010 ACGTGTATGCCAAAAAGTAGATATTAA 57.614 29.630 0.00 0.00 0.00 1.40
2283 3099 8.951787 ACGTGTATGCCAAAAAGTAGATATTA 57.048 30.769 0.00 0.00 0.00 0.98
2284 3100 7.859325 ACGTGTATGCCAAAAAGTAGATATT 57.141 32.000 0.00 0.00 0.00 1.28
2285 3101 7.335924 ACAACGTGTATGCCAAAAAGTAGATAT 59.664 33.333 0.00 0.00 0.00 1.63
2286 3102 6.651643 ACAACGTGTATGCCAAAAAGTAGATA 59.348 34.615 0.00 0.00 0.00 1.98
2287 3103 5.472137 ACAACGTGTATGCCAAAAAGTAGAT 59.528 36.000 0.00 0.00 0.00 1.98
2288 3104 4.817464 ACAACGTGTATGCCAAAAAGTAGA 59.183 37.500 0.00 0.00 0.00 2.59
2289 3105 4.909305 CACAACGTGTATGCCAAAAAGTAG 59.091 41.667 0.00 0.00 0.00 2.57
2290 3106 4.790123 GCACAACGTGTATGCCAAAAAGTA 60.790 41.667 7.52 0.00 35.75 2.24
2291 3107 3.701241 CACAACGTGTATGCCAAAAAGT 58.299 40.909 0.00 0.00 0.00 2.66
2292 3108 2.470999 GCACAACGTGTATGCCAAAAAG 59.529 45.455 7.52 0.00 35.75 2.27
2293 3109 2.159240 TGCACAACGTGTATGCCAAAAA 60.159 40.909 14.29 0.00 38.63 1.94
2294 3110 1.405463 TGCACAACGTGTATGCCAAAA 59.595 42.857 14.29 0.00 38.63 2.44
2295 3111 1.025041 TGCACAACGTGTATGCCAAA 58.975 45.000 14.29 0.00 38.63 3.28
2296 3112 1.242989 ATGCACAACGTGTATGCCAA 58.757 45.000 14.29 0.29 37.47 4.52
2297 3113 1.242989 AATGCACAACGTGTATGCCA 58.757 45.000 14.29 5.43 37.86 4.92
2298 3114 2.095263 AGAAATGCACAACGTGTATGCC 60.095 45.455 14.29 1.97 37.86 4.40
2299 3115 3.201726 AGAAATGCACAACGTGTATGC 57.798 42.857 11.01 11.01 37.86 3.14
2300 3116 4.536065 ACAAGAAATGCACAACGTGTATG 58.464 39.130 0.00 0.00 37.86 2.39
2301 3117 4.829064 ACAAGAAATGCACAACGTGTAT 57.171 36.364 0.00 0.00 40.33 2.29
2302 3118 5.933187 ATACAAGAAATGCACAACGTGTA 57.067 34.783 13.36 13.36 35.75 2.90
2303 3119 4.829064 ATACAAGAAATGCACAACGTGT 57.171 36.364 10.72 10.72 35.75 4.49
2304 3120 5.684850 TGTATACAAGAAATGCACAACGTG 58.315 37.500 2.20 0.00 36.51 4.49
2305 3121 5.933187 TGTATACAAGAAATGCACAACGT 57.067 34.783 2.20 0.00 0.00 3.99
2306 3122 6.465781 GTGATGTATACAAGAAATGCACAACG 59.534 38.462 10.14 0.00 0.00 4.10
2307 3123 6.465781 CGTGATGTATACAAGAAATGCACAAC 59.534 38.462 10.14 0.00 0.00 3.32
2308 3124 6.370166 TCGTGATGTATACAAGAAATGCACAA 59.630 34.615 10.14 0.00 0.00 3.33
2309 3125 5.872070 TCGTGATGTATACAAGAAATGCACA 59.128 36.000 10.14 0.00 0.00 4.57
2310 3126 6.344572 TCGTGATGTATACAAGAAATGCAC 57.655 37.500 10.14 8.53 0.00 4.57
2311 3127 6.976636 TTCGTGATGTATACAAGAAATGCA 57.023 33.333 10.14 0.00 34.20 3.96
2329 3145 9.961266 TGAACGTGTCTATAAAAATTATTCGTG 57.039 29.630 0.00 0.00 0.00 4.35
2337 3153 9.959749 ACAAATGTTGAACGTGTCTATAAAAAT 57.040 25.926 0.00 0.00 0.00 1.82
2344 3160 9.043079 TGTATTTACAAATGTTGAACGTGTCTA 57.957 29.630 2.94 0.00 32.40 2.59
2345 3161 7.921787 TGTATTTACAAATGTTGAACGTGTCT 58.078 30.769 2.94 0.00 32.40 3.41
2346 3162 8.626576 CATGTATTTACAAATGTTGAACGTGTC 58.373 33.333 2.94 0.00 39.99 3.67
2347 3163 8.346300 TCATGTATTTACAAATGTTGAACGTGT 58.654 29.630 0.00 0.00 39.99 4.49
2348 3164 8.720909 TCATGTATTTACAAATGTTGAACGTG 57.279 30.769 0.00 0.40 39.99 4.49
2349 3165 9.906660 AATCATGTATTTACAAATGTTGAACGT 57.093 25.926 0.00 0.00 39.99 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.