Multiple sequence alignment - TraesCS7D01G511200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G511200 chr7D 100.000 3419 0 0 1 3419 613662498 613659080 0.000000e+00 6314.0
1 TraesCS7D01G511200 chr7D 89.634 1476 140 5 945 2413 627449778 627451247 0.000000e+00 1866.0
2 TraesCS7D01G511200 chr7D 87.610 1477 171 10 945 2413 613626289 613627761 0.000000e+00 1703.0
3 TraesCS7D01G511200 chr7A 93.508 2403 108 15 729 3087 705332867 705330469 0.000000e+00 3530.0
4 TraesCS7D01G511200 chr7A 88.935 1446 154 2 974 2413 705297100 705298545 0.000000e+00 1779.0
5 TraesCS7D01G511200 chr7A 87.296 307 31 6 3113 3419 705307788 705307490 9.080000e-91 344.0
6 TraesCS7D01G511200 chr7A 91.111 180 14 1 95 272 705333641 705333462 3.410000e-60 243.0
7 TraesCS7D01G511200 chr7A 90.000 60 2 4 3114 3169 126942375 126942316 1.320000e-09 75.0
8 TraesCS7D01G511200 chr7B 92.571 1871 72 27 677 2481 704637791 704635922 0.000000e+00 2623.0
9 TraesCS7D01G511200 chr7B 89.017 1475 142 11 945 2413 704289594 704291054 0.000000e+00 1808.0
10 TraesCS7D01G511200 chr7B 88.279 1476 160 7 945 2413 704547869 704549338 0.000000e+00 1755.0
11 TraesCS7D01G511200 chr7B 86.379 903 105 8 945 1833 728933743 728934641 0.000000e+00 970.0
12 TraesCS7D01G511200 chr7B 88.286 700 77 4 1718 2413 704317466 704316768 0.000000e+00 833.0
13 TraesCS7D01G511200 chr7B 88.200 661 76 2 1753 2413 729217430 729218088 0.000000e+00 787.0
14 TraesCS7D01G511200 chr7B 85.235 745 106 4 945 1688 704318203 704317462 0.000000e+00 763.0
15 TraesCS7D01G511200 chr7B 93.839 211 10 2 65 273 704641165 704640956 7.120000e-82 315.0
16 TraesCS7D01G511200 chr7B 95.522 67 3 0 615 681 704640963 704640897 1.300000e-19 108.0
17 TraesCS7D01G511200 chr7B 88.060 67 4 3 275 340 5332940 5332877 3.660000e-10 76.8
18 TraesCS7D01G511200 chr7B 95.652 46 2 0 3108 3153 481346499 481346544 1.320000e-09 75.0
19 TraesCS7D01G511200 chr5A 81.074 391 59 10 2417 2798 674333398 674333014 7.170000e-77 298.0
20 TraesCS7D01G511200 chrUn 80.170 353 58 6 2459 2802 85464777 85464428 1.570000e-63 254.0
21 TraesCS7D01G511200 chrUn 75.429 175 33 8 274 438 87945861 87946035 3.660000e-10 76.8
22 TraesCS7D01G511200 chrUn 94.737 38 2 0 279 316 238529835 238529798 3.680000e-05 60.2
23 TraesCS7D01G511200 chrUn 94.737 38 2 0 279 316 238543942 238543905 3.680000e-05 60.2
24 TraesCS7D01G511200 chrUn 94.737 38 2 0 276 313 253688408 253688445 3.680000e-05 60.2
25 TraesCS7D01G511200 chrUn 94.737 38 2 0 276 313 253699354 253699391 3.680000e-05 60.2
26 TraesCS7D01G511200 chr6B 79.321 324 43 12 2850 3152 48223524 48223204 4.470000e-49 206.0
27 TraesCS7D01G511200 chr1A 80.769 234 31 5 274 498 567855348 567855120 1.630000e-38 171.0
28 TraesCS7D01G511200 chr1A 80.342 234 32 5 274 498 567812484 567812256 7.590000e-37 165.0
29 TraesCS7D01G511200 chr1A 79.915 234 33 5 274 498 567828944 567828716 3.530000e-35 159.0
30 TraesCS7D01G511200 chr1A 79.915 234 33 5 274 498 567883362 567883134 3.530000e-35 159.0
31 TraesCS7D01G511200 chr1A 80.000 235 32 6 274 498 567913983 567913754 3.530000e-35 159.0
32 TraesCS7D01G511200 chr2A 79.565 230 29 5 276 495 559087407 559087186 7.640000e-32 148.0
33 TraesCS7D01G511200 chr1D 78.788 231 41 7 274 498 473592714 473592486 7.640000e-32 148.0
34 TraesCS7D01G511200 chr1D 77.679 224 28 7 274 495 10302957 10302754 2.160000e-22 117.0
35 TraesCS7D01G511200 chr2B 88.393 112 12 1 385 495 402367588 402367699 2.140000e-27 134.0
36 TraesCS7D01G511200 chr3A 76.577 222 38 10 285 495 474840584 474840802 3.610000e-20 110.0
37 TraesCS7D01G511200 chr3B 86.316 95 13 0 385 479 447011365 447011459 1.680000e-18 104.0
38 TraesCS7D01G511200 chr6D 100.000 35 0 0 275 309 451902007 451902041 7.920000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G511200 chr7D 613659080 613662498 3418 True 6314.000000 6314 100.000000 1 3419 1 chr7D.!!$R1 3418
1 TraesCS7D01G511200 chr7D 627449778 627451247 1469 False 1866.000000 1866 89.634000 945 2413 1 chr7D.!!$F2 1468
2 TraesCS7D01G511200 chr7D 613626289 613627761 1472 False 1703.000000 1703 87.610000 945 2413 1 chr7D.!!$F1 1468
3 TraesCS7D01G511200 chr7A 705330469 705333641 3172 True 1886.500000 3530 92.309500 95 3087 2 chr7A.!!$R3 2992
4 TraesCS7D01G511200 chr7A 705297100 705298545 1445 False 1779.000000 1779 88.935000 974 2413 1 chr7A.!!$F1 1439
5 TraesCS7D01G511200 chr7B 704289594 704291054 1460 False 1808.000000 1808 89.017000 945 2413 1 chr7B.!!$F2 1468
6 TraesCS7D01G511200 chr7B 704547869 704549338 1469 False 1755.000000 1755 88.279000 945 2413 1 chr7B.!!$F3 1468
7 TraesCS7D01G511200 chr7B 704635922 704641165 5243 True 1015.333333 2623 93.977333 65 2481 3 chr7B.!!$R3 2416
8 TraesCS7D01G511200 chr7B 728933743 728934641 898 False 970.000000 970 86.379000 945 1833 1 chr7B.!!$F4 888
9 TraesCS7D01G511200 chr7B 704316768 704318203 1435 True 798.000000 833 86.760500 945 2413 2 chr7B.!!$R2 1468
10 TraesCS7D01G511200 chr7B 729217430 729218088 658 False 787.000000 787 88.200000 1753 2413 1 chr7B.!!$F5 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 323 0.109532 TCATCTGCACCCGGTCAAAA 59.890 50.000 0.0 0.0 0.0 2.44 F
318 324 0.958091 CATCTGCACCCGGTCAAAAA 59.042 50.000 0.0 0.0 0.0 1.94 F
534 540 1.696884 TGGAGCAGACAACACATACCA 59.303 47.619 0.0 0.0 0.0 3.25 F
1986 5690 0.250513 GGGTGATCAAGGAGACGCTT 59.749 55.000 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 5306 0.250597 TCTCTCCGAACACCGTCTCA 60.251 55.000 0.0 0.0 36.31 3.27 R
1627 5310 0.526662 GACATCTCTCCGAACACCGT 59.473 55.000 0.0 0.0 36.31 4.83 R
2283 5990 1.909302 TCGAAATGGAAGAGGAGGCTT 59.091 47.619 0.0 0.0 0.00 4.35 R
3390 7131 0.197145 CCCTGGATCCCCTTCCCTAT 59.803 60.000 9.9 0.0 34.67 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.871629 TTAGCTTTACCAAATTTCTGTATCCA 57.128 30.769 0.00 0.00 0.00 3.41
49 50 7.961326 AGCTTTACCAAATTTCTGTATCCAT 57.039 32.000 0.00 0.00 0.00 3.41
50 51 7.775120 AGCTTTACCAAATTTCTGTATCCATG 58.225 34.615 0.00 0.00 0.00 3.66
51 52 6.476706 GCTTTACCAAATTTCTGTATCCATGC 59.523 38.462 0.00 0.00 0.00 4.06
52 53 7.473735 TTTACCAAATTTCTGTATCCATGCA 57.526 32.000 0.00 0.00 0.00 3.96
53 54 7.658525 TTACCAAATTTCTGTATCCATGCAT 57.341 32.000 0.00 0.00 0.00 3.96
54 55 6.549433 ACCAAATTTCTGTATCCATGCATT 57.451 33.333 0.00 0.00 0.00 3.56
55 56 7.658525 ACCAAATTTCTGTATCCATGCATTA 57.341 32.000 0.00 0.00 0.00 1.90
56 57 8.076910 ACCAAATTTCTGTATCCATGCATTAA 57.923 30.769 0.00 0.00 0.00 1.40
57 58 8.538701 ACCAAATTTCTGTATCCATGCATTAAA 58.461 29.630 0.00 0.00 0.00 1.52
58 59 8.819974 CCAAATTTCTGTATCCATGCATTAAAC 58.180 33.333 0.00 0.00 0.00 2.01
59 60 8.533965 CAAATTTCTGTATCCATGCATTAAACG 58.466 33.333 0.00 0.00 0.00 3.60
60 61 6.751514 TTTCTGTATCCATGCATTAAACGT 57.248 33.333 0.00 0.00 0.00 3.99
61 62 5.733226 TCTGTATCCATGCATTAAACGTG 57.267 39.130 0.00 0.00 0.00 4.49
62 63 5.182487 TCTGTATCCATGCATTAAACGTGT 58.818 37.500 0.00 0.00 0.00 4.49
63 64 5.293324 TCTGTATCCATGCATTAAACGTGTC 59.707 40.000 0.00 0.00 0.00 3.67
72 73 4.973051 TGCATTAAACGTGTCATGTTTGTC 59.027 37.500 26.49 15.40 37.80 3.18
106 109 8.028354 ACATCAATCAAATTAAGCACATTTCGA 58.972 29.630 0.00 0.00 0.00 3.71
128 131 6.700081 TCGAAATATTCCGTAACATTCTGGAG 59.300 38.462 0.00 0.00 0.00 3.86
156 159 4.107622 GCATTGCATGAACAGGTGATTAC 58.892 43.478 3.15 0.00 0.00 1.89
172 175 3.054361 TGATTACTTCCTTCTTCCCTGCC 60.054 47.826 0.00 0.00 0.00 4.85
225 231 9.425248 AATTCATCTCCTTTCTGCCAAATTATA 57.575 29.630 0.00 0.00 0.00 0.98
270 276 9.880157 ATAATTGTCTAAAATTGCAAGCAGATT 57.120 25.926 4.94 0.00 32.16 2.40
271 277 8.611654 AATTGTCTAAAATTGCAAGCAGATTT 57.388 26.923 4.94 10.52 0.00 2.17
272 278 7.410800 TTGTCTAAAATTGCAAGCAGATTTG 57.589 32.000 4.94 0.00 0.00 2.32
287 293 5.766222 GCAGATTTGCGAATATCCAATTCT 58.234 37.500 0.00 0.00 41.13 2.40
288 294 5.628193 GCAGATTTGCGAATATCCAATTCTG 59.372 40.000 18.97 18.97 44.32 3.02
289 295 6.513884 GCAGATTTGCGAATATCCAATTCTGA 60.514 38.462 22.99 0.00 44.29 3.27
290 296 7.076362 CAGATTTGCGAATATCCAATTCTGAG 58.924 38.462 18.75 5.26 44.29 3.35
291 297 4.818534 TTGCGAATATCCAATTCTGAGC 57.181 40.909 0.00 0.00 0.00 4.26
292 298 3.141398 TGCGAATATCCAATTCTGAGCC 58.859 45.455 0.00 0.00 0.00 4.70
293 299 2.485814 GCGAATATCCAATTCTGAGCCC 59.514 50.000 0.00 0.00 0.00 5.19
294 300 2.738846 CGAATATCCAATTCTGAGCCCG 59.261 50.000 0.00 0.00 0.00 6.13
295 301 3.554960 CGAATATCCAATTCTGAGCCCGA 60.555 47.826 0.00 0.00 0.00 5.14
296 302 3.692257 ATATCCAATTCTGAGCCCGAG 57.308 47.619 0.00 0.00 0.00 4.63
297 303 0.179034 ATCCAATTCTGAGCCCGAGC 60.179 55.000 0.00 0.00 40.32 5.03
307 313 2.894387 GCCCGAGCTCATCTGCAC 60.894 66.667 15.40 0.00 35.50 4.57
308 314 2.202987 CCCGAGCTCATCTGCACC 60.203 66.667 15.40 0.00 34.99 5.01
309 315 2.202987 CCGAGCTCATCTGCACCC 60.203 66.667 15.40 0.00 34.99 4.61
310 316 2.584418 CGAGCTCATCTGCACCCG 60.584 66.667 15.40 0.00 34.99 5.28
311 317 2.202987 GAGCTCATCTGCACCCGG 60.203 66.667 9.40 0.00 34.99 5.73
312 318 3.005539 AGCTCATCTGCACCCGGT 61.006 61.111 0.00 0.00 34.99 5.28
313 319 2.512515 GCTCATCTGCACCCGGTC 60.513 66.667 0.00 0.00 0.00 4.79
314 320 2.981302 CTCATCTGCACCCGGTCA 59.019 61.111 0.00 0.00 0.00 4.02
315 321 1.296392 CTCATCTGCACCCGGTCAA 59.704 57.895 0.00 0.00 0.00 3.18
316 322 0.321564 CTCATCTGCACCCGGTCAAA 60.322 55.000 0.00 0.00 0.00 2.69
317 323 0.109532 TCATCTGCACCCGGTCAAAA 59.890 50.000 0.00 0.00 0.00 2.44
318 324 0.958091 CATCTGCACCCGGTCAAAAA 59.042 50.000 0.00 0.00 0.00 1.94
386 392 7.732222 TTTTATGGAAGGCAGATAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
387 393 6.713762 TTATGGAAGGCAGATAATTTGGTG 57.286 37.500 0.00 0.00 0.00 4.17
388 394 2.760092 TGGAAGGCAGATAATTTGGTGC 59.240 45.455 0.00 0.00 35.07 5.01
389 395 2.760092 GGAAGGCAGATAATTTGGTGCA 59.240 45.455 7.61 0.00 37.68 4.57
390 396 3.429410 GGAAGGCAGATAATTTGGTGCAC 60.429 47.826 8.80 8.80 37.68 4.57
391 397 3.091633 AGGCAGATAATTTGGTGCACT 57.908 42.857 17.98 0.00 37.68 4.40
392 398 3.019564 AGGCAGATAATTTGGTGCACTC 58.980 45.455 17.98 7.60 37.68 3.51
393 399 3.019564 GGCAGATAATTTGGTGCACTCT 58.980 45.455 17.98 6.75 37.68 3.24
394 400 4.080356 AGGCAGATAATTTGGTGCACTCTA 60.080 41.667 17.98 2.16 37.68 2.43
395 401 4.640201 GGCAGATAATTTGGTGCACTCTAA 59.360 41.667 17.98 10.34 37.68 2.10
396 402 5.125417 GGCAGATAATTTGGTGCACTCTAAA 59.875 40.000 17.98 15.39 37.68 1.85
397 403 6.183360 GGCAGATAATTTGGTGCACTCTAAAT 60.183 38.462 17.98 16.83 37.68 1.40
398 404 7.260603 GCAGATAATTTGGTGCACTCTAAATT 58.739 34.615 26.77 26.77 36.83 1.82
399 405 7.761249 GCAGATAATTTGGTGCACTCTAAATTT 59.239 33.333 27.79 20.49 35.22 1.82
400 406 9.294030 CAGATAATTTGGTGCACTCTAAATTTC 57.706 33.333 27.79 24.09 35.22 2.17
401 407 9.023962 AGATAATTTGGTGCACTCTAAATTTCA 57.976 29.630 27.79 18.96 35.22 2.69
402 408 9.294030 GATAATTTGGTGCACTCTAAATTTCAG 57.706 33.333 27.79 0.00 35.22 3.02
403 409 6.899393 ATTTGGTGCACTCTAAATTTCAGA 57.101 33.333 17.98 0.00 0.00 3.27
404 410 5.689383 TTGGTGCACTCTAAATTTCAGAC 57.311 39.130 17.98 0.00 0.00 3.51
405 411 4.072131 TGGTGCACTCTAAATTTCAGACC 58.928 43.478 17.98 0.00 0.00 3.85
406 412 4.072131 GGTGCACTCTAAATTTCAGACCA 58.928 43.478 17.98 0.00 0.00 4.02
407 413 4.702131 GGTGCACTCTAAATTTCAGACCAT 59.298 41.667 17.98 0.00 0.00 3.55
408 414 5.183904 GGTGCACTCTAAATTTCAGACCATT 59.816 40.000 17.98 0.00 0.00 3.16
409 415 6.294731 GGTGCACTCTAAATTTCAGACCATTT 60.295 38.462 17.98 0.00 0.00 2.32
410 416 6.583806 GTGCACTCTAAATTTCAGACCATTTG 59.416 38.462 10.32 0.00 0.00 2.32
411 417 6.095377 GCACTCTAAATTTCAGACCATTTGG 58.905 40.000 0.00 0.00 42.17 3.28
412 418 6.071952 GCACTCTAAATTTCAGACCATTTGGA 60.072 38.462 3.01 2.10 38.94 3.53
413 419 7.308435 CACTCTAAATTTCAGACCATTTGGAC 58.692 38.462 3.01 0.00 38.94 4.02
414 420 7.004086 ACTCTAAATTTCAGACCATTTGGACA 58.996 34.615 3.01 0.00 38.94 4.02
415 421 7.671398 ACTCTAAATTTCAGACCATTTGGACAT 59.329 33.333 3.01 0.00 38.94 3.06
416 422 8.055279 TCTAAATTTCAGACCATTTGGACATC 57.945 34.615 3.01 0.00 38.94 3.06
417 423 6.923199 AAATTTCAGACCATTTGGACATCT 57.077 33.333 3.01 0.00 38.94 2.90
418 424 5.909621 ATTTCAGACCATTTGGACATCTG 57.090 39.130 3.01 6.49 37.25 2.90
419 425 4.639078 TTCAGACCATTTGGACATCTGA 57.361 40.909 12.11 12.11 40.74 3.27
420 426 4.212143 TCAGACCATTTGGACATCTGAG 57.788 45.455 12.11 0.00 38.88 3.35
421 427 3.584406 TCAGACCATTTGGACATCTGAGT 59.416 43.478 12.11 0.00 38.88 3.41
422 428 4.777366 TCAGACCATTTGGACATCTGAGTA 59.223 41.667 12.11 0.00 38.88 2.59
423 429 5.248248 TCAGACCATTTGGACATCTGAGTAA 59.752 40.000 12.11 0.00 38.88 2.24
424 430 5.352569 CAGACCATTTGGACATCTGAGTAAC 59.647 44.000 3.01 0.00 37.79 2.50
425 431 5.249393 AGACCATTTGGACATCTGAGTAACT 59.751 40.000 3.01 0.00 38.94 2.24
426 432 5.491982 ACCATTTGGACATCTGAGTAACTC 58.508 41.667 3.01 0.00 38.94 3.01
427 433 5.249393 ACCATTTGGACATCTGAGTAACTCT 59.751 40.000 3.01 0.00 38.94 3.24
428 434 5.814705 CCATTTGGACATCTGAGTAACTCTC 59.185 44.000 0.00 0.00 39.49 3.20
429 435 6.575056 CCATTTGGACATCTGAGTAACTCTCA 60.575 42.308 0.00 2.05 43.40 3.27
430 436 8.010187 CCATTTGGACATCTGAGTAACTCTCAA 61.010 40.741 2.82 0.00 44.23 3.02
456 462 5.413309 AAAAGACAAATTGGGTCACAACA 57.587 34.783 11.72 0.00 42.94 3.33
457 463 4.654091 AAGACAAATTGGGTCACAACAG 57.346 40.909 11.72 0.00 42.94 3.16
458 464 3.631250 AGACAAATTGGGTCACAACAGT 58.369 40.909 11.72 0.00 42.94 3.55
459 465 4.787551 AGACAAATTGGGTCACAACAGTA 58.212 39.130 11.72 0.00 42.94 2.74
460 466 5.385198 AGACAAATTGGGTCACAACAGTAT 58.615 37.500 11.72 0.00 42.94 2.12
461 467 6.539173 AGACAAATTGGGTCACAACAGTATA 58.461 36.000 11.72 0.00 42.94 1.47
462 468 7.175104 AGACAAATTGGGTCACAACAGTATAT 58.825 34.615 11.72 0.00 42.94 0.86
463 469 7.121168 AGACAAATTGGGTCACAACAGTATATG 59.879 37.037 11.72 0.00 42.94 1.78
464 470 5.835113 AATTGGGTCACAACAGTATATGC 57.165 39.130 0.00 0.00 42.94 3.14
465 471 3.990959 TGGGTCACAACAGTATATGCA 57.009 42.857 0.00 0.00 0.00 3.96
466 472 3.605634 TGGGTCACAACAGTATATGCAC 58.394 45.455 0.00 0.00 0.00 4.57
467 473 3.008485 TGGGTCACAACAGTATATGCACA 59.992 43.478 0.00 0.00 0.00 4.57
468 474 4.006989 GGGTCACAACAGTATATGCACAA 58.993 43.478 0.00 0.00 0.00 3.33
469 475 4.640201 GGGTCACAACAGTATATGCACAAT 59.360 41.667 0.00 0.00 0.00 2.71
470 476 5.820423 GGGTCACAACAGTATATGCACAATA 59.180 40.000 0.00 0.00 0.00 1.90
471 477 6.238374 GGGTCACAACAGTATATGCACAATAC 60.238 42.308 11.42 11.42 0.00 1.89
472 478 6.315144 GGTCACAACAGTATATGCACAATACA 59.685 38.462 18.45 0.00 33.15 2.29
473 479 7.180079 GTCACAACAGTATATGCACAATACAC 58.820 38.462 18.45 6.70 33.15 2.90
474 480 7.064609 GTCACAACAGTATATGCACAATACACT 59.935 37.037 18.45 0.00 27.96 3.55
475 481 7.606073 TCACAACAGTATATGCACAATACACTT 59.394 33.333 18.45 9.26 25.18 3.16
476 482 8.236586 CACAACAGTATATGCACAATACACTTT 58.763 33.333 18.45 8.77 25.18 2.66
477 483 8.792633 ACAACAGTATATGCACAATACACTTTT 58.207 29.630 18.45 0.00 25.18 2.27
478 484 9.624697 CAACAGTATATGCACAATACACTTTTT 57.375 29.630 18.45 5.76 25.18 1.94
483 489 9.217223 GTATATGCACAATACACTTTTTAACCG 57.783 33.333 13.59 0.00 31.43 4.44
484 490 5.752892 TGCACAATACACTTTTTAACCGA 57.247 34.783 0.00 0.00 0.00 4.69
485 491 5.512473 TGCACAATACACTTTTTAACCGAC 58.488 37.500 0.00 0.00 0.00 4.79
486 492 4.913345 GCACAATACACTTTTTAACCGACC 59.087 41.667 0.00 0.00 0.00 4.79
487 493 5.454520 CACAATACACTTTTTAACCGACCC 58.545 41.667 0.00 0.00 0.00 4.46
488 494 4.520111 ACAATACACTTTTTAACCGACCCC 59.480 41.667 0.00 0.00 0.00 4.95
489 495 2.732844 ACACTTTTTAACCGACCCCA 57.267 45.000 0.00 0.00 0.00 4.96
490 496 3.015675 ACACTTTTTAACCGACCCCAA 57.984 42.857 0.00 0.00 0.00 4.12
491 497 3.363627 ACACTTTTTAACCGACCCCAAA 58.636 40.909 0.00 0.00 0.00 3.28
492 498 3.962063 ACACTTTTTAACCGACCCCAAAT 59.038 39.130 0.00 0.00 0.00 2.32
493 499 4.406326 ACACTTTTTAACCGACCCCAAATT 59.594 37.500 0.00 0.00 0.00 1.82
494 500 5.104859 ACACTTTTTAACCGACCCCAAATTT 60.105 36.000 0.00 0.00 0.00 1.82
495 501 5.818336 CACTTTTTAACCGACCCCAAATTTT 59.182 36.000 0.00 0.00 0.00 1.82
496 502 6.316640 CACTTTTTAACCGACCCCAAATTTTT 59.683 34.615 0.00 0.00 0.00 1.94
521 527 7.661127 TCAAATGATTTGAAATTTGGAGCAG 57.339 32.000 17.50 0.00 45.94 4.24
522 528 7.443477 TCAAATGATTTGAAATTTGGAGCAGA 58.557 30.769 17.50 0.00 45.94 4.26
523 529 7.385752 TCAAATGATTTGAAATTTGGAGCAGAC 59.614 33.333 17.50 0.00 45.94 3.51
524 530 5.787953 TGATTTGAAATTTGGAGCAGACA 57.212 34.783 0.00 0.00 0.00 3.41
525 531 6.159299 TGATTTGAAATTTGGAGCAGACAA 57.841 33.333 0.00 0.00 0.00 3.18
526 532 5.984926 TGATTTGAAATTTGGAGCAGACAAC 59.015 36.000 0.00 0.00 0.00 3.32
527 533 4.998671 TTGAAATTTGGAGCAGACAACA 57.001 36.364 0.00 0.00 0.00 3.33
528 534 4.305989 TGAAATTTGGAGCAGACAACAC 57.694 40.909 0.00 0.00 0.00 3.32
529 535 3.698539 TGAAATTTGGAGCAGACAACACA 59.301 39.130 0.00 0.00 0.00 3.72
530 536 4.341806 TGAAATTTGGAGCAGACAACACAT 59.658 37.500 0.00 0.00 0.00 3.21
531 537 5.534278 TGAAATTTGGAGCAGACAACACATA 59.466 36.000 0.00 0.00 0.00 2.29
532 538 5.376854 AATTTGGAGCAGACAACACATAC 57.623 39.130 0.00 0.00 0.00 2.39
533 539 2.472695 TGGAGCAGACAACACATACC 57.527 50.000 0.00 0.00 0.00 2.73
534 540 1.696884 TGGAGCAGACAACACATACCA 59.303 47.619 0.00 0.00 0.00 3.25
535 541 2.105649 TGGAGCAGACAACACATACCAA 59.894 45.455 0.00 0.00 0.00 3.67
536 542 3.146066 GGAGCAGACAACACATACCAAA 58.854 45.455 0.00 0.00 0.00 3.28
537 543 3.758554 GGAGCAGACAACACATACCAAAT 59.241 43.478 0.00 0.00 0.00 2.32
538 544 4.218417 GGAGCAGACAACACATACCAAATT 59.782 41.667 0.00 0.00 0.00 1.82
539 545 5.414454 GGAGCAGACAACACATACCAAATTA 59.586 40.000 0.00 0.00 0.00 1.40
540 546 6.095440 GGAGCAGACAACACATACCAAATTAT 59.905 38.462 0.00 0.00 0.00 1.28
541 547 7.088589 AGCAGACAACACATACCAAATTATC 57.911 36.000 0.00 0.00 0.00 1.75
542 548 6.886459 AGCAGACAACACATACCAAATTATCT 59.114 34.615 0.00 0.00 0.00 1.98
543 549 8.046708 AGCAGACAACACATACCAAATTATCTA 58.953 33.333 0.00 0.00 0.00 1.98
544 550 8.122952 GCAGACAACACATACCAAATTATCTAC 58.877 37.037 0.00 0.00 0.00 2.59
545 551 8.612619 CAGACAACACATACCAAATTATCTACC 58.387 37.037 0.00 0.00 0.00 3.18
546 552 8.325787 AGACAACACATACCAAATTATCTACCA 58.674 33.333 0.00 0.00 0.00 3.25
547 553 9.120538 GACAACACATACCAAATTATCTACCAT 57.879 33.333 0.00 0.00 0.00 3.55
548 554 8.902806 ACAACACATACCAAATTATCTACCATG 58.097 33.333 0.00 0.00 0.00 3.66
549 555 9.119418 CAACACATACCAAATTATCTACCATGA 57.881 33.333 0.00 0.00 0.00 3.07
550 556 8.677148 ACACATACCAAATTATCTACCATGAC 57.323 34.615 0.00 0.00 0.00 3.06
551 557 8.271458 ACACATACCAAATTATCTACCATGACA 58.729 33.333 0.00 0.00 0.00 3.58
552 558 9.119418 CACATACCAAATTATCTACCATGACAA 57.881 33.333 0.00 0.00 0.00 3.18
553 559 9.693739 ACATACCAAATTATCTACCATGACAAA 57.306 29.630 0.00 0.00 0.00 2.83
565 571 7.771183 TCTACCATGACAAAAATAATTGGAGC 58.229 34.615 0.00 0.00 34.56 4.70
566 572 6.610075 ACCATGACAAAAATAATTGGAGCT 57.390 33.333 0.00 0.00 34.56 4.09
567 573 7.008021 ACCATGACAAAAATAATTGGAGCTT 57.992 32.000 0.00 0.00 34.56 3.74
568 574 7.452562 ACCATGACAAAAATAATTGGAGCTTT 58.547 30.769 0.00 0.00 34.56 3.51
569 575 7.938490 ACCATGACAAAAATAATTGGAGCTTTT 59.062 29.630 0.00 0.00 34.56 2.27
570 576 8.785946 CCATGACAAAAATAATTGGAGCTTTTT 58.214 29.630 0.00 0.00 34.56 1.94
736 4338 5.450592 ACTAATTACTCTAGCTAACCGGC 57.549 43.478 0.00 0.00 0.00 6.13
762 4364 4.095632 TGATCTAGACAGCTCTGACGAAAG 59.904 45.833 3.60 0.00 0.00 2.62
910 4526 2.257691 TAAACTACGCTTGGTTGGCA 57.742 45.000 0.00 0.00 0.00 4.92
1776 5480 2.060980 GCCTCTGGACATCCCGACT 61.061 63.158 0.00 0.00 37.93 4.18
1779 5483 2.320781 CCTCTGGACATCCCGACTATT 58.679 52.381 0.00 0.00 37.93 1.73
1986 5690 0.250513 GGGTGATCAAGGAGACGCTT 59.749 55.000 0.00 0.00 0.00 4.68
2446 6177 3.260884 AGTTCTTTTGAGCTATCCGGTGA 59.739 43.478 0.00 0.00 38.25 4.02
2457 6188 4.101741 AGCTATCCGGTGAAAATAAGCTCT 59.898 41.667 0.00 0.00 0.00 4.09
2459 6190 5.989777 GCTATCCGGTGAAAATAAGCTCTAA 59.010 40.000 0.00 0.00 0.00 2.10
2465 6196 8.044908 TCCGGTGAAAATAAGCTCTAAATAAGT 58.955 33.333 0.00 0.00 0.00 2.24
2513 6244 9.813826 ATAATAACCTATCCCATTCTTTTCAGG 57.186 33.333 0.00 0.00 0.00 3.86
2516 6247 2.925966 ATCCCATTCTTTTCAGGGCA 57.074 45.000 0.00 0.00 41.22 5.36
2548 6281 9.559732 TTTATCTTATCTGTGGTATGGTCAATG 57.440 33.333 0.00 0.00 0.00 2.82
2553 6286 8.642935 TTATCTGTGGTATGGTCAATGAAAAA 57.357 30.769 0.00 0.00 0.00 1.94
2557 6290 6.923012 TGTGGTATGGTCAATGAAAAATCTG 58.077 36.000 0.00 0.00 0.00 2.90
2572 6305 9.747898 ATGAAAAATCTGTAATACCCTTGTACA 57.252 29.630 0.00 0.00 0.00 2.90
2637 6376 2.772077 TTGCTGCCCGTAAGAACATA 57.228 45.000 0.00 0.00 43.02 2.29
2646 6385 4.260497 GCCCGTAAGAACATAAATTCGACC 60.260 45.833 0.00 0.00 43.02 4.79
2658 6397 3.982576 AATTCGACCTCAAAACACCAC 57.017 42.857 0.00 0.00 0.00 4.16
2660 6399 2.404923 TCGACCTCAAAACACCACAA 57.595 45.000 0.00 0.00 0.00 3.33
2670 6409 8.736244 ACCTCAAAACACCACAATATGTTATAC 58.264 33.333 0.00 0.00 38.08 1.47
2697 6436 9.177608 TCAAACATAAGGAAGATAATTGTCTGG 57.822 33.333 5.38 0.00 0.00 3.86
2722 6461 7.121911 GCATACGAATATCATACATGCATCAC 58.878 38.462 0.00 0.00 37.74 3.06
2723 6462 7.624661 CATACGAATATCATACATGCATCACC 58.375 38.462 0.00 0.00 0.00 4.02
2851 6592 4.525996 AGCATACACACAAGCCATCAATA 58.474 39.130 0.00 0.00 0.00 1.90
2903 6644 2.026822 CAGAGGGCAACAATCCTGTACT 60.027 50.000 0.00 0.00 33.45 2.73
2911 6652 4.517285 CAACAATCCTGTACTAGGCACAT 58.483 43.478 6.51 0.00 46.87 3.21
3021 6762 5.873712 CCGCTCATAGCAAATCTAGATGAAT 59.126 40.000 5.86 0.00 42.58 2.57
3022 6763 6.370994 CCGCTCATAGCAAATCTAGATGAATT 59.629 38.462 5.86 0.00 42.58 2.17
3023 6764 7.094890 CCGCTCATAGCAAATCTAGATGAATTT 60.095 37.037 5.86 0.00 42.58 1.82
3024 6765 8.288208 CGCTCATAGCAAATCTAGATGAATTTT 58.712 33.333 5.86 0.00 42.58 1.82
3067 6808 2.815211 CTCATGGTCACGGCCACG 60.815 66.667 2.24 0.00 41.94 4.94
3072 6813 4.736896 GGTCACGGCCACGGACTC 62.737 72.222 15.53 5.25 46.48 3.36
3102 6843 2.269241 GGGGTTCTTCGCCAGAGG 59.731 66.667 0.00 0.00 46.70 3.69
3103 6844 2.269241 GGGTTCTTCGCCAGAGGG 59.731 66.667 0.00 0.00 31.12 4.30
3104 6845 2.269241 GGTTCTTCGCCAGAGGGG 59.731 66.667 0.00 0.00 40.85 4.79
3175 6916 4.694233 CGGAGTGGTGCTGCTGCT 62.694 66.667 17.00 0.00 40.48 4.24
3176 6917 3.054503 GGAGTGGTGCTGCTGCTG 61.055 66.667 17.00 0.77 40.48 4.41
3177 6918 3.735029 GAGTGGTGCTGCTGCTGC 61.735 66.667 22.51 22.51 40.48 5.25
3185 6926 3.420606 CTGCTGCTGCACACCGAG 61.421 66.667 14.93 0.00 45.31 4.63
3192 6933 2.986979 TGCACACCGAGCGAGGTA 60.987 61.111 5.84 0.00 43.89 3.08
3193 6934 2.506438 GCACACCGAGCGAGGTAC 60.506 66.667 5.84 0.00 43.89 3.34
3194 6935 2.991076 GCACACCGAGCGAGGTACT 61.991 63.158 5.84 0.00 43.89 2.73
3195 6936 1.154016 CACACCGAGCGAGGTACTG 60.154 63.158 5.84 1.87 43.89 2.74
3196 6937 2.341101 ACACCGAGCGAGGTACTGG 61.341 63.158 5.84 0.00 43.89 4.00
3220 6961 4.390341 CTGAGGAAGGAGGGAGGG 57.610 66.667 0.00 0.00 0.00 4.30
3221 6962 1.383803 CTGAGGAAGGAGGGAGGGG 60.384 68.421 0.00 0.00 0.00 4.79
3222 6963 2.184631 TGAGGAAGGAGGGAGGGGT 61.185 63.158 0.00 0.00 0.00 4.95
3223 6964 1.383386 GAGGAAGGAGGGAGGGGTC 60.383 68.421 0.00 0.00 0.00 4.46
3224 6965 2.182858 GAGGAAGGAGGGAGGGGTCA 62.183 65.000 0.00 0.00 0.00 4.02
3225 6966 1.996187 GGAAGGAGGGAGGGGTCAC 60.996 68.421 0.00 0.00 0.00 3.67
3226 6967 2.284699 AAGGAGGGAGGGGTCACG 60.285 66.667 0.00 0.00 0.00 4.35
3237 6978 4.452733 GGTCACGCCCGAGGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
3238 6979 3.379445 GTCACGCCCGAGGAAGGA 61.379 66.667 0.00 0.00 0.00 3.36
3239 6980 3.068691 TCACGCCCGAGGAAGGAG 61.069 66.667 0.00 0.00 0.00 3.69
3240 6981 3.068691 CACGCCCGAGGAAGGAGA 61.069 66.667 0.00 0.00 0.00 3.71
3241 6982 2.756283 ACGCCCGAGGAAGGAGAG 60.756 66.667 0.00 0.00 0.00 3.20
3242 6983 3.532155 CGCCCGAGGAAGGAGAGG 61.532 72.222 0.00 0.00 0.00 3.69
3243 6984 2.042843 GCCCGAGGAAGGAGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
3244 6985 2.131067 GCCCGAGGAAGGAGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
3245 6986 2.131067 CCCGAGGAAGGAGAGGAGC 61.131 68.421 0.00 0.00 0.00 4.70
3246 6987 1.380515 CCGAGGAAGGAGAGGAGCA 60.381 63.158 0.00 0.00 0.00 4.26
3247 6988 0.758685 CCGAGGAAGGAGAGGAGCAT 60.759 60.000 0.00 0.00 0.00 3.79
3248 6989 0.673437 CGAGGAAGGAGAGGAGCATC 59.327 60.000 0.00 0.00 0.00 3.91
3249 6990 0.673437 GAGGAAGGAGAGGAGCATCG 59.327 60.000 0.00 0.00 34.37 3.84
3250 6991 0.758685 AGGAAGGAGAGGAGCATCGG 60.759 60.000 0.00 0.00 34.37 4.18
3251 6992 1.068921 GAAGGAGAGGAGCATCGGC 59.931 63.158 0.00 0.00 41.61 5.54
3261 7002 3.928779 GCATCGGCGGGAGATGGA 61.929 66.667 7.21 0.00 44.06 3.41
3262 7003 2.341543 CATCGGCGGGAGATGGAG 59.658 66.667 7.21 0.00 41.16 3.86
3263 7004 2.919856 ATCGGCGGGAGATGGAGG 60.920 66.667 7.21 0.00 0.00 4.30
3267 7008 4.247380 GCGGGAGATGGAGGCCTG 62.247 72.222 12.00 0.00 0.00 4.85
3268 7009 4.247380 CGGGAGATGGAGGCCTGC 62.247 72.222 18.95 18.95 0.00 4.85
3269 7010 3.883549 GGGAGATGGAGGCCTGCC 61.884 72.222 22.95 17.17 33.83 4.85
3270 7011 3.883549 GGAGATGGAGGCCTGCCC 61.884 72.222 22.95 13.03 36.58 5.36
3271 7012 4.247380 GAGATGGAGGCCTGCCCG 62.247 72.222 22.95 0.00 39.21 6.13
3289 7030 4.873129 CCGTCCATGTCGCCGGAG 62.873 72.222 5.05 0.00 43.01 4.63
3290 7031 3.822192 CGTCCATGTCGCCGGAGA 61.822 66.667 5.05 3.81 29.98 3.71
3291 7032 2.202756 GTCCATGTCGCCGGAGAC 60.203 66.667 29.10 29.10 41.30 3.36
3312 7053 3.522731 CTCGTCGAGGAGCTGGGG 61.523 72.222 21.00 0.00 0.00 4.96
3313 7054 3.997400 CTCGTCGAGGAGCTGGGGA 62.997 68.421 21.00 0.00 0.00 4.81
3314 7055 3.827898 CGTCGAGGAGCTGGGGAC 61.828 72.222 0.00 0.00 0.00 4.46
3350 7091 4.943822 GCTGTAGCTGGAGGAACC 57.056 61.111 0.00 0.00 38.21 3.62
3351 7092 1.222113 GCTGTAGCTGGAGGAACCC 59.778 63.158 0.00 0.00 38.00 4.11
3352 7093 1.268283 GCTGTAGCTGGAGGAACCCT 61.268 60.000 0.00 0.00 38.00 4.34
3353 7094 1.965318 GCTGTAGCTGGAGGAACCCTA 60.965 57.143 0.00 0.00 38.00 3.53
3354 7095 2.035632 CTGTAGCTGGAGGAACCCTAG 58.964 57.143 0.00 0.00 38.00 3.02
3355 7096 0.753867 GTAGCTGGAGGAACCCTAGC 59.246 60.000 0.00 8.66 38.00 3.42
3356 7097 0.398664 TAGCTGGAGGAACCCTAGCC 60.399 60.000 0.00 0.00 38.00 3.93
3357 7098 1.690985 GCTGGAGGAACCCTAGCCT 60.691 63.158 0.00 0.00 38.00 4.58
3358 7099 1.977293 GCTGGAGGAACCCTAGCCTG 61.977 65.000 0.00 0.00 38.00 4.85
3359 7100 1.977293 CTGGAGGAACCCTAGCCTGC 61.977 65.000 0.00 0.00 42.33 4.85
3360 7101 2.501610 GAGGAACCCTAGCCTGCG 59.498 66.667 0.00 0.00 33.84 5.18
3361 7102 3.083997 AGGAACCCTAGCCTGCGG 61.084 66.667 0.00 0.00 32.06 5.69
3362 7103 4.176752 GGAACCCTAGCCTGCGGG 62.177 72.222 7.41 7.41 46.26 6.13
3363 7104 3.081409 GAACCCTAGCCTGCGGGA 61.081 66.667 18.31 0.00 43.44 5.14
3364 7105 3.083997 AACCCTAGCCTGCGGGAG 61.084 66.667 18.31 4.20 43.44 4.30
3376 7117 3.068691 CGGGAGCGAGAGGGACAA 61.069 66.667 0.00 0.00 0.00 3.18
3377 7118 2.896443 GGGAGCGAGAGGGACAAG 59.104 66.667 0.00 0.00 0.00 3.16
3378 7119 2.726351 GGGAGCGAGAGGGACAAGG 61.726 68.421 0.00 0.00 0.00 3.61
3379 7120 2.726351 GGAGCGAGAGGGACAAGGG 61.726 68.421 0.00 0.00 0.00 3.95
3380 7121 1.682684 GAGCGAGAGGGACAAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
3381 7122 1.002274 AGCGAGAGGGACAAGGGAT 59.998 57.895 0.00 0.00 0.00 3.85
3382 7123 0.618968 AGCGAGAGGGACAAGGGATT 60.619 55.000 0.00 0.00 0.00 3.01
3383 7124 0.462759 GCGAGAGGGACAAGGGATTG 60.463 60.000 0.00 0.00 0.00 2.67
3384 7125 1.195115 CGAGAGGGACAAGGGATTGA 58.805 55.000 0.00 0.00 0.00 2.57
3385 7126 1.137872 CGAGAGGGACAAGGGATTGAG 59.862 57.143 0.00 0.00 0.00 3.02
3386 7127 2.192263 GAGAGGGACAAGGGATTGAGT 58.808 52.381 0.00 0.00 0.00 3.41
3387 7128 1.912043 AGAGGGACAAGGGATTGAGTG 59.088 52.381 0.00 0.00 0.00 3.51
3388 7129 1.630878 GAGGGACAAGGGATTGAGTGT 59.369 52.381 0.00 0.00 0.00 3.55
3389 7130 1.352352 AGGGACAAGGGATTGAGTGTG 59.648 52.381 0.00 0.00 0.00 3.82
3390 7131 1.351017 GGGACAAGGGATTGAGTGTGA 59.649 52.381 0.00 0.00 0.00 3.58
3391 7132 2.025887 GGGACAAGGGATTGAGTGTGAT 60.026 50.000 0.00 0.00 0.00 3.06
3392 7133 3.199946 GGGACAAGGGATTGAGTGTGATA 59.800 47.826 0.00 0.00 0.00 2.15
3393 7134 4.446371 GGACAAGGGATTGAGTGTGATAG 58.554 47.826 0.00 0.00 0.00 2.08
3394 7135 4.446371 GACAAGGGATTGAGTGTGATAGG 58.554 47.826 0.00 0.00 0.00 2.57
3395 7136 3.200825 ACAAGGGATTGAGTGTGATAGGG 59.799 47.826 0.00 0.00 0.00 3.53
3396 7137 3.421394 AGGGATTGAGTGTGATAGGGA 57.579 47.619 0.00 0.00 0.00 4.20
3397 7138 3.736094 AGGGATTGAGTGTGATAGGGAA 58.264 45.455 0.00 0.00 0.00 3.97
3398 7139 3.713764 AGGGATTGAGTGTGATAGGGAAG 59.286 47.826 0.00 0.00 0.00 3.46
3399 7140 3.181450 GGGATTGAGTGTGATAGGGAAGG 60.181 52.174 0.00 0.00 0.00 3.46
3400 7141 3.181450 GGATTGAGTGTGATAGGGAAGGG 60.181 52.174 0.00 0.00 0.00 3.95
3401 7142 1.879575 TGAGTGTGATAGGGAAGGGG 58.120 55.000 0.00 0.00 0.00 4.79
3402 7143 1.364678 TGAGTGTGATAGGGAAGGGGA 59.635 52.381 0.00 0.00 0.00 4.81
3403 7144 2.022035 TGAGTGTGATAGGGAAGGGGAT 60.022 50.000 0.00 0.00 0.00 3.85
3404 7145 2.635427 GAGTGTGATAGGGAAGGGGATC 59.365 54.545 0.00 0.00 0.00 3.36
3405 7146 1.700186 GTGTGATAGGGAAGGGGATCC 59.300 57.143 1.92 1.92 38.86 3.36
3406 7147 1.296832 TGTGATAGGGAAGGGGATCCA 59.703 52.381 15.23 0.00 41.55 3.41
3407 7148 1.981495 GTGATAGGGAAGGGGATCCAG 59.019 57.143 15.23 0.00 41.55 3.86
3408 7149 1.132397 TGATAGGGAAGGGGATCCAGG 60.132 57.143 15.23 0.00 41.55 4.45
3409 7150 0.197145 ATAGGGAAGGGGATCCAGGG 59.803 60.000 15.23 0.00 41.55 4.45
3410 7151 0.939443 TAGGGAAGGGGATCCAGGGA 60.939 60.000 15.23 0.00 41.55 4.20
3411 7152 1.772156 GGGAAGGGGATCCAGGGAG 60.772 68.421 15.23 0.00 41.55 4.30
3412 7153 1.772156 GGAAGGGGATCCAGGGAGG 60.772 68.421 15.23 0.00 39.42 4.30
3413 7154 1.772156 GAAGGGGATCCAGGGAGGG 60.772 68.421 15.23 0.00 38.24 4.30
3414 7155 2.569373 GAAGGGGATCCAGGGAGGGT 62.569 65.000 15.23 0.00 38.24 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.303116 TGGATACAGAAATTTGGTAAAGCTAAA 57.697 29.630 0.00 0.00 46.17 1.85
23 24 8.871629 TGGATACAGAAATTTGGTAAAGCTAA 57.128 30.769 0.00 0.00 46.17 3.09
42 43 5.478233 TGACACGTTTAATGCATGGATAC 57.522 39.130 0.00 0.00 0.00 2.24
43 44 5.588246 ACATGACACGTTTAATGCATGGATA 59.412 36.000 0.00 0.00 36.62 2.59
44 45 4.398988 ACATGACACGTTTAATGCATGGAT 59.601 37.500 0.00 0.00 36.62 3.41
45 46 3.755905 ACATGACACGTTTAATGCATGGA 59.244 39.130 0.00 0.00 36.62 3.41
46 47 4.095410 ACATGACACGTTTAATGCATGG 57.905 40.909 0.00 0.00 36.62 3.66
47 48 5.401972 ACAAACATGACACGTTTAATGCATG 59.598 36.000 0.00 0.00 37.48 4.06
48 49 5.527951 ACAAACATGACACGTTTAATGCAT 58.472 33.333 0.00 0.00 34.87 3.96
49 50 4.926244 ACAAACATGACACGTTTAATGCA 58.074 34.783 0.00 0.00 34.87 3.96
50 51 4.973051 TGACAAACATGACACGTTTAATGC 59.027 37.500 0.00 0.00 34.87 3.56
51 52 7.059831 CAGATGACAAACATGACACGTTTAATG 59.940 37.037 0.00 0.00 39.56 1.90
52 53 7.077605 CAGATGACAAACATGACACGTTTAAT 58.922 34.615 0.00 0.00 39.56 1.40
53 54 6.426327 CAGATGACAAACATGACACGTTTAA 58.574 36.000 0.00 0.00 39.56 1.52
54 55 5.049749 CCAGATGACAAACATGACACGTTTA 60.050 40.000 0.00 0.00 39.56 2.01
55 56 4.261155 CCAGATGACAAACATGACACGTTT 60.261 41.667 0.00 0.00 39.56 3.60
56 57 3.250762 CCAGATGACAAACATGACACGTT 59.749 43.478 0.00 0.00 39.56 3.99
57 58 2.807967 CCAGATGACAAACATGACACGT 59.192 45.455 0.00 0.00 39.56 4.49
58 59 2.413239 GCCAGATGACAAACATGACACG 60.413 50.000 0.00 0.00 39.56 4.49
59 60 2.553602 TGCCAGATGACAAACATGACAC 59.446 45.455 0.00 0.00 39.56 3.67
60 61 2.553602 GTGCCAGATGACAAACATGACA 59.446 45.455 0.00 0.00 39.56 3.58
61 62 2.553602 TGTGCCAGATGACAAACATGAC 59.446 45.455 0.00 0.00 39.56 3.06
62 63 2.861274 TGTGCCAGATGACAAACATGA 58.139 42.857 0.00 0.00 39.56 3.07
63 64 3.191791 TGATGTGCCAGATGACAAACATG 59.808 43.478 0.00 0.00 39.56 3.21
72 73 6.200286 GCTTAATTTGATTGATGTGCCAGATG 59.800 38.462 0.00 0.00 0.00 2.90
106 109 9.712305 CTATCTCCAGAATGTTACGGAATATTT 57.288 33.333 3.66 0.00 0.00 1.40
128 131 3.379372 ACCTGTTCATGCAATGCACTATC 59.621 43.478 11.23 2.69 46.21 2.08
156 159 1.304617 GGGGCAGGGAAGAAGGAAG 59.695 63.158 0.00 0.00 0.00 3.46
240 246 8.249638 TGCTTGCAATTTTAGACAATTATAGCA 58.750 29.630 0.00 0.00 34.25 3.49
268 274 5.278660 GGCTCAGAATTGGATATTCGCAAAT 60.279 40.000 0.00 0.00 33.51 2.32
269 275 4.036734 GGCTCAGAATTGGATATTCGCAAA 59.963 41.667 0.00 0.00 33.51 3.68
270 276 3.565482 GGCTCAGAATTGGATATTCGCAA 59.435 43.478 0.00 0.00 33.51 4.85
271 277 3.141398 GGCTCAGAATTGGATATTCGCA 58.859 45.455 0.00 0.00 33.51 5.10
272 278 2.485814 GGGCTCAGAATTGGATATTCGC 59.514 50.000 0.00 0.00 33.51 4.70
273 279 2.738846 CGGGCTCAGAATTGGATATTCG 59.261 50.000 0.00 0.00 33.51 3.34
274 280 3.999663 CTCGGGCTCAGAATTGGATATTC 59.000 47.826 0.00 0.00 0.00 1.75
275 281 3.808618 GCTCGGGCTCAGAATTGGATATT 60.809 47.826 0.00 0.00 35.22 1.28
276 282 2.289945 GCTCGGGCTCAGAATTGGATAT 60.290 50.000 0.00 0.00 35.22 1.63
277 283 1.070758 GCTCGGGCTCAGAATTGGATA 59.929 52.381 0.00 0.00 35.22 2.59
278 284 0.179034 GCTCGGGCTCAGAATTGGAT 60.179 55.000 0.00 0.00 35.22 3.41
279 285 1.221840 GCTCGGGCTCAGAATTGGA 59.778 57.895 0.00 0.00 35.22 3.53
280 286 3.819188 GCTCGGGCTCAGAATTGG 58.181 61.111 0.00 0.00 35.22 3.16
290 296 2.894387 GTGCAGATGAGCTCGGGC 60.894 66.667 9.64 0.00 39.06 6.13
291 297 2.202987 GGTGCAGATGAGCTCGGG 60.203 66.667 9.64 0.00 34.99 5.14
292 298 2.202987 GGGTGCAGATGAGCTCGG 60.203 66.667 9.64 0.00 34.99 4.63
293 299 2.584418 CGGGTGCAGATGAGCTCG 60.584 66.667 9.64 0.00 34.99 5.03
294 300 2.202987 CCGGGTGCAGATGAGCTC 60.203 66.667 6.82 6.82 34.99 4.09
295 301 3.005539 ACCGGGTGCAGATGAGCT 61.006 61.111 6.32 0.00 34.99 4.09
296 302 2.512515 GACCGGGTGCAGATGAGC 60.513 66.667 3.30 0.00 0.00 4.26
297 303 0.321564 TTTGACCGGGTGCAGATGAG 60.322 55.000 3.30 0.00 0.00 2.90
298 304 0.109532 TTTTGACCGGGTGCAGATGA 59.890 50.000 3.30 0.00 0.00 2.92
299 305 0.958091 TTTTTGACCGGGTGCAGATG 59.042 50.000 3.30 0.00 0.00 2.90
300 306 3.430473 TTTTTGACCGGGTGCAGAT 57.570 47.368 3.30 0.00 0.00 2.90
301 307 4.988744 TTTTTGACCGGGTGCAGA 57.011 50.000 3.30 0.00 0.00 4.26
361 367 8.040132 CACCAAATTATCTGCCTTCCATAAAAA 58.960 33.333 0.00 0.00 0.00 1.94
362 368 7.555087 CACCAAATTATCTGCCTTCCATAAAA 58.445 34.615 0.00 0.00 0.00 1.52
363 369 6.406849 GCACCAAATTATCTGCCTTCCATAAA 60.407 38.462 0.00 0.00 0.00 1.40
364 370 5.068987 GCACCAAATTATCTGCCTTCCATAA 59.931 40.000 0.00 0.00 0.00 1.90
365 371 4.584325 GCACCAAATTATCTGCCTTCCATA 59.416 41.667 0.00 0.00 0.00 2.74
366 372 3.385755 GCACCAAATTATCTGCCTTCCAT 59.614 43.478 0.00 0.00 0.00 3.41
367 373 2.760092 GCACCAAATTATCTGCCTTCCA 59.240 45.455 0.00 0.00 0.00 3.53
368 374 2.760092 TGCACCAAATTATCTGCCTTCC 59.240 45.455 0.00 0.00 0.00 3.46
369 375 3.445096 AGTGCACCAAATTATCTGCCTTC 59.555 43.478 14.63 0.00 0.00 3.46
370 376 3.434309 AGTGCACCAAATTATCTGCCTT 58.566 40.909 14.63 0.00 0.00 4.35
371 377 3.019564 GAGTGCACCAAATTATCTGCCT 58.980 45.455 14.63 0.00 0.00 4.75
372 378 3.019564 AGAGTGCACCAAATTATCTGCC 58.980 45.455 14.63 0.00 0.00 4.85
373 379 5.818136 TTAGAGTGCACCAAATTATCTGC 57.182 39.130 14.63 0.00 0.00 4.26
374 380 9.294030 GAAATTTAGAGTGCACCAAATTATCTG 57.706 33.333 23.68 0.00 31.97 2.90
375 381 9.023962 TGAAATTTAGAGTGCACCAAATTATCT 57.976 29.630 23.68 16.85 31.97 1.98
376 382 9.294030 CTGAAATTTAGAGTGCACCAAATTATC 57.706 33.333 23.68 21.58 31.97 1.75
377 383 9.023962 TCTGAAATTTAGAGTGCACCAAATTAT 57.976 29.630 23.68 17.23 31.97 1.28
378 384 8.296713 GTCTGAAATTTAGAGTGCACCAAATTA 58.703 33.333 23.68 14.36 31.97 1.40
379 385 7.147976 GTCTGAAATTTAGAGTGCACCAAATT 58.852 34.615 20.35 20.35 33.24 1.82
380 386 6.294731 GGTCTGAAATTTAGAGTGCACCAAAT 60.295 38.462 14.63 13.72 0.00 2.32
381 387 5.009610 GGTCTGAAATTTAGAGTGCACCAAA 59.990 40.000 14.63 11.97 0.00 3.28
382 388 4.518970 GGTCTGAAATTTAGAGTGCACCAA 59.481 41.667 14.63 2.33 0.00 3.67
383 389 4.072131 GGTCTGAAATTTAGAGTGCACCA 58.928 43.478 14.63 0.00 0.00 4.17
384 390 4.072131 TGGTCTGAAATTTAGAGTGCACC 58.928 43.478 14.63 5.12 0.00 5.01
385 391 5.886960 ATGGTCTGAAATTTAGAGTGCAC 57.113 39.130 9.40 9.40 0.00 4.57
386 392 6.294675 CCAAATGGTCTGAAATTTAGAGTGCA 60.295 38.462 0.00 0.00 0.00 4.57
387 393 6.071952 TCCAAATGGTCTGAAATTTAGAGTGC 60.072 38.462 0.00 0.00 36.34 4.40
388 394 7.040478 TGTCCAAATGGTCTGAAATTTAGAGTG 60.040 37.037 0.00 0.00 36.34 3.51
389 395 7.004086 TGTCCAAATGGTCTGAAATTTAGAGT 58.996 34.615 0.00 0.00 36.34 3.24
390 396 7.452880 TGTCCAAATGGTCTGAAATTTAGAG 57.547 36.000 0.00 0.00 36.34 2.43
391 397 7.890127 AGATGTCCAAATGGTCTGAAATTTAGA 59.110 33.333 0.00 0.00 36.34 2.10
392 398 7.972277 CAGATGTCCAAATGGTCTGAAATTTAG 59.028 37.037 11.27 0.00 37.79 1.85
393 399 7.669304 TCAGATGTCCAAATGGTCTGAAATTTA 59.331 33.333 15.18 0.00 40.03 1.40
394 400 6.494491 TCAGATGTCCAAATGGTCTGAAATTT 59.506 34.615 15.18 0.00 40.03 1.82
395 401 6.012113 TCAGATGTCCAAATGGTCTGAAATT 58.988 36.000 15.18 0.00 40.03 1.82
396 402 5.573219 TCAGATGTCCAAATGGTCTGAAAT 58.427 37.500 15.18 0.00 40.03 2.17
397 403 4.984295 TCAGATGTCCAAATGGTCTGAAA 58.016 39.130 15.18 0.00 40.03 2.69
398 404 4.042062 ACTCAGATGTCCAAATGGTCTGAA 59.958 41.667 17.13 6.61 41.40 3.02
399 405 3.584406 ACTCAGATGTCCAAATGGTCTGA 59.416 43.478 16.13 16.13 40.42 3.27
400 406 3.947868 ACTCAGATGTCCAAATGGTCTG 58.052 45.455 10.71 10.71 37.25 3.51
401 407 5.249393 AGTTACTCAGATGTCCAAATGGTCT 59.751 40.000 0.00 0.00 36.34 3.85
402 408 5.491982 AGTTACTCAGATGTCCAAATGGTC 58.508 41.667 0.00 0.00 36.34 4.02
403 409 5.249393 AGAGTTACTCAGATGTCCAAATGGT 59.751 40.000 15.23 0.00 32.74 3.55
404 410 5.738909 AGAGTTACTCAGATGTCCAAATGG 58.261 41.667 15.23 0.00 32.06 3.16
405 411 6.900568 GAGAGTTACTCAGATGTCCAAATG 57.099 41.667 15.23 0.00 44.36 2.32
433 439 5.799213 TGTTGTGACCCAATTTGTCTTTTT 58.201 33.333 6.47 0.00 35.02 1.94
434 440 5.046663 ACTGTTGTGACCCAATTTGTCTTTT 60.047 36.000 6.47 0.00 35.02 2.27
435 441 4.466015 ACTGTTGTGACCCAATTTGTCTTT 59.534 37.500 6.47 0.00 35.02 2.52
436 442 4.023291 ACTGTTGTGACCCAATTTGTCTT 58.977 39.130 6.47 0.00 35.02 3.01
437 443 3.631250 ACTGTTGTGACCCAATTTGTCT 58.369 40.909 6.47 0.00 35.02 3.41
438 444 5.705609 ATACTGTTGTGACCCAATTTGTC 57.294 39.130 0.00 0.00 35.02 3.18
439 445 6.350110 GCATATACTGTTGTGACCCAATTTGT 60.350 38.462 0.00 0.00 35.02 2.83
440 446 6.035843 GCATATACTGTTGTGACCCAATTTG 58.964 40.000 0.00 0.00 35.02 2.32
441 447 5.714333 TGCATATACTGTTGTGACCCAATTT 59.286 36.000 0.00 0.00 35.02 1.82
442 448 5.125417 GTGCATATACTGTTGTGACCCAATT 59.875 40.000 0.00 0.00 35.02 2.32
443 449 4.640201 GTGCATATACTGTTGTGACCCAAT 59.360 41.667 0.00 0.00 35.02 3.16
444 450 4.006989 GTGCATATACTGTTGTGACCCAA 58.993 43.478 0.00 0.00 0.00 4.12
445 451 3.008485 TGTGCATATACTGTTGTGACCCA 59.992 43.478 0.00 0.00 0.00 4.51
446 452 3.605634 TGTGCATATACTGTTGTGACCC 58.394 45.455 0.00 0.00 0.00 4.46
447 453 5.818136 ATTGTGCATATACTGTTGTGACC 57.182 39.130 0.00 0.00 0.00 4.02
448 454 7.064609 AGTGTATTGTGCATATACTGTTGTGAC 59.935 37.037 17.56 9.29 38.16 3.67
449 455 7.102993 AGTGTATTGTGCATATACTGTTGTGA 58.897 34.615 17.56 0.27 38.16 3.58
450 456 7.307493 AGTGTATTGTGCATATACTGTTGTG 57.693 36.000 17.56 0.00 38.16 3.33
451 457 7.921786 AAGTGTATTGTGCATATACTGTTGT 57.078 32.000 17.56 0.00 38.52 3.32
452 458 9.624697 AAAAAGTGTATTGTGCATATACTGTTG 57.375 29.630 17.56 0.00 38.52 3.33
457 463 9.217223 CGGTTAAAAAGTGTATTGTGCATATAC 57.783 33.333 12.53 12.53 31.13 1.47
458 464 9.163899 TCGGTTAAAAAGTGTATTGTGCATATA 57.836 29.630 0.00 0.00 0.00 0.86
459 465 7.966204 GTCGGTTAAAAAGTGTATTGTGCATAT 59.034 33.333 0.00 0.00 0.00 1.78
460 466 7.299586 GTCGGTTAAAAAGTGTATTGTGCATA 58.700 34.615 0.00 0.00 0.00 3.14
461 467 6.146898 GTCGGTTAAAAAGTGTATTGTGCAT 58.853 36.000 0.00 0.00 0.00 3.96
462 468 5.505985 GGTCGGTTAAAAAGTGTATTGTGCA 60.506 40.000 0.00 0.00 0.00 4.57
463 469 4.913345 GGTCGGTTAAAAAGTGTATTGTGC 59.087 41.667 0.00 0.00 0.00 4.57
464 470 5.454520 GGGTCGGTTAAAAAGTGTATTGTG 58.545 41.667 0.00 0.00 0.00 3.33
465 471 4.520111 GGGGTCGGTTAAAAAGTGTATTGT 59.480 41.667 0.00 0.00 0.00 2.71
466 472 4.519730 TGGGGTCGGTTAAAAAGTGTATTG 59.480 41.667 0.00 0.00 0.00 1.90
467 473 4.727677 TGGGGTCGGTTAAAAAGTGTATT 58.272 39.130 0.00 0.00 0.00 1.89
468 474 4.370094 TGGGGTCGGTTAAAAAGTGTAT 57.630 40.909 0.00 0.00 0.00 2.29
469 475 3.853355 TGGGGTCGGTTAAAAAGTGTA 57.147 42.857 0.00 0.00 0.00 2.90
470 476 2.732844 TGGGGTCGGTTAAAAAGTGT 57.267 45.000 0.00 0.00 0.00 3.55
471 477 4.594123 ATTTGGGGTCGGTTAAAAAGTG 57.406 40.909 0.00 0.00 0.00 3.16
472 478 5.617528 AAATTTGGGGTCGGTTAAAAAGT 57.382 34.783 0.00 0.00 0.00 2.66
473 479 6.928979 AAAAATTTGGGGTCGGTTAAAAAG 57.071 33.333 0.00 0.00 0.00 2.27
498 504 7.171848 TGTCTGCTCCAAATTTCAAATCATTTG 59.828 33.333 3.46 3.46 39.25 2.32
499 505 7.218614 TGTCTGCTCCAAATTTCAAATCATTT 58.781 30.769 0.00 0.00 0.00 2.32
500 506 6.761312 TGTCTGCTCCAAATTTCAAATCATT 58.239 32.000 0.00 0.00 0.00 2.57
501 507 6.349243 TGTCTGCTCCAAATTTCAAATCAT 57.651 33.333 0.00 0.00 0.00 2.45
502 508 5.787953 TGTCTGCTCCAAATTTCAAATCA 57.212 34.783 0.00 0.00 0.00 2.57
503 509 5.984926 TGTTGTCTGCTCCAAATTTCAAATC 59.015 36.000 0.00 0.00 0.00 2.17
504 510 5.754890 GTGTTGTCTGCTCCAAATTTCAAAT 59.245 36.000 0.00 0.00 0.00 2.32
505 511 5.108517 GTGTTGTCTGCTCCAAATTTCAAA 58.891 37.500 0.00 0.00 0.00 2.69
506 512 4.159321 TGTGTTGTCTGCTCCAAATTTCAA 59.841 37.500 0.00 0.00 0.00 2.69
507 513 3.698539 TGTGTTGTCTGCTCCAAATTTCA 59.301 39.130 0.00 0.00 0.00 2.69
508 514 4.305989 TGTGTTGTCTGCTCCAAATTTC 57.694 40.909 0.00 0.00 0.00 2.17
509 515 4.942761 ATGTGTTGTCTGCTCCAAATTT 57.057 36.364 0.00 0.00 0.00 1.82
510 516 4.218417 GGTATGTGTTGTCTGCTCCAAATT 59.782 41.667 0.00 0.00 0.00 1.82
511 517 3.758554 GGTATGTGTTGTCTGCTCCAAAT 59.241 43.478 0.00 0.00 0.00 2.32
512 518 3.146066 GGTATGTGTTGTCTGCTCCAAA 58.854 45.455 0.00 0.00 0.00 3.28
513 519 2.105649 TGGTATGTGTTGTCTGCTCCAA 59.894 45.455 0.00 0.00 0.00 3.53
514 520 1.696884 TGGTATGTGTTGTCTGCTCCA 59.303 47.619 0.00 0.00 0.00 3.86
515 521 2.472695 TGGTATGTGTTGTCTGCTCC 57.527 50.000 0.00 0.00 0.00 4.70
516 522 5.376854 AATTTGGTATGTGTTGTCTGCTC 57.623 39.130 0.00 0.00 0.00 4.26
517 523 6.886459 AGATAATTTGGTATGTGTTGTCTGCT 59.114 34.615 0.00 0.00 0.00 4.24
518 524 7.088589 AGATAATTTGGTATGTGTTGTCTGC 57.911 36.000 0.00 0.00 0.00 4.26
519 525 8.612619 GGTAGATAATTTGGTATGTGTTGTCTG 58.387 37.037 0.00 0.00 0.00 3.51
520 526 8.325787 TGGTAGATAATTTGGTATGTGTTGTCT 58.674 33.333 0.00 0.00 0.00 3.41
521 527 8.500753 TGGTAGATAATTTGGTATGTGTTGTC 57.499 34.615 0.00 0.00 0.00 3.18
522 528 8.902806 CATGGTAGATAATTTGGTATGTGTTGT 58.097 33.333 0.00 0.00 0.00 3.32
523 529 9.119418 TCATGGTAGATAATTTGGTATGTGTTG 57.881 33.333 0.00 0.00 0.00 3.33
524 530 9.120538 GTCATGGTAGATAATTTGGTATGTGTT 57.879 33.333 0.00 0.00 0.00 3.32
525 531 8.271458 TGTCATGGTAGATAATTTGGTATGTGT 58.729 33.333 0.00 0.00 0.00 3.72
526 532 8.675705 TGTCATGGTAGATAATTTGGTATGTG 57.324 34.615 0.00 0.00 0.00 3.21
527 533 9.693739 TTTGTCATGGTAGATAATTTGGTATGT 57.306 29.630 0.00 0.00 0.00 2.29
539 545 8.416329 GCTCCAATTATTTTTGTCATGGTAGAT 58.584 33.333 0.00 0.00 0.00 1.98
540 546 7.615365 AGCTCCAATTATTTTTGTCATGGTAGA 59.385 33.333 0.00 0.00 0.00 2.59
541 547 7.775120 AGCTCCAATTATTTTTGTCATGGTAG 58.225 34.615 0.00 0.00 0.00 3.18
542 548 7.716799 AGCTCCAATTATTTTTGTCATGGTA 57.283 32.000 0.00 0.00 0.00 3.25
543 549 6.610075 AGCTCCAATTATTTTTGTCATGGT 57.390 33.333 0.00 0.00 0.00 3.55
544 550 7.910441 AAAGCTCCAATTATTTTTGTCATGG 57.090 32.000 0.00 0.00 0.00 3.66
599 605 6.418057 ACAAATCTGGGAGTGCAATAAAAA 57.582 33.333 0.00 0.00 0.00 1.94
600 606 6.041409 TCAACAAATCTGGGAGTGCAATAAAA 59.959 34.615 0.00 0.00 0.00 1.52
601 607 5.538053 TCAACAAATCTGGGAGTGCAATAAA 59.462 36.000 0.00 0.00 0.00 1.40
602 608 5.048083 GTCAACAAATCTGGGAGTGCAATAA 60.048 40.000 0.00 0.00 0.00 1.40
603 609 4.458989 GTCAACAAATCTGGGAGTGCAATA 59.541 41.667 0.00 0.00 0.00 1.90
604 610 3.256631 GTCAACAAATCTGGGAGTGCAAT 59.743 43.478 0.00 0.00 0.00 3.56
605 611 2.622942 GTCAACAAATCTGGGAGTGCAA 59.377 45.455 0.00 0.00 0.00 4.08
606 612 2.158623 AGTCAACAAATCTGGGAGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
607 613 2.485814 GAGTCAACAAATCTGGGAGTGC 59.514 50.000 0.00 0.00 0.00 4.40
608 614 3.999663 GAGAGTCAACAAATCTGGGAGTG 59.000 47.826 0.00 0.00 0.00 3.51
609 615 3.648067 TGAGAGTCAACAAATCTGGGAGT 59.352 43.478 0.00 0.00 0.00 3.85
610 616 4.277515 TGAGAGTCAACAAATCTGGGAG 57.722 45.455 0.00 0.00 0.00 4.30
611 617 4.705110 TTGAGAGTCAACAAATCTGGGA 57.295 40.909 0.00 0.00 30.26 4.37
633 639 1.803943 CTCCTTCCTCCGTGTCTCG 59.196 63.158 0.00 0.00 39.52 4.04
719 3871 2.042686 TCGCCGGTTAGCTAGAGTAA 57.957 50.000 1.90 0.00 0.00 2.24
736 4338 3.363871 CGTCAGAGCTGTCTAGATCATCG 60.364 52.174 0.00 0.00 41.75 3.84
762 4364 6.433766 GTCTTTCAGAATTATACATGCTGGC 58.566 40.000 0.00 0.00 0.00 4.85
876 4486 4.439153 CGTAGTTTATGTAGGAGCAACCGA 60.439 45.833 0.00 0.00 44.74 4.69
877 4487 3.795101 CGTAGTTTATGTAGGAGCAACCG 59.205 47.826 0.00 0.00 44.74 4.44
910 4526 2.601367 GTGGTTGCCATGGCCTGT 60.601 61.111 33.44 0.00 41.09 4.00
930 4546 2.124695 GGAGGTGGCGATGGTTCC 60.125 66.667 0.00 0.00 0.00 3.62
1623 5306 0.250597 TCTCTCCGAACACCGTCTCA 60.251 55.000 0.00 0.00 36.31 3.27
1627 5310 0.526662 GACATCTCTCCGAACACCGT 59.473 55.000 0.00 0.00 36.31 4.83
2283 5990 1.909302 TCGAAATGGAAGAGGAGGCTT 59.091 47.619 0.00 0.00 0.00 4.35
2494 6225 3.225940 GCCCTGAAAAGAATGGGATAGG 58.774 50.000 0.00 0.00 42.11 2.57
2498 6229 2.925966 ATGCCCTGAAAAGAATGGGA 57.074 45.000 0.00 0.00 42.11 4.37
2499 6230 5.619132 AAATATGCCCTGAAAAGAATGGG 57.381 39.130 0.00 0.00 42.41 4.00
2524 6255 8.491045 TCATTGACCATACCACAGATAAGATA 57.509 34.615 0.00 0.00 0.00 1.98
2525 6256 7.379059 TCATTGACCATACCACAGATAAGAT 57.621 36.000 0.00 0.00 0.00 2.40
2526 6257 6.806668 TCATTGACCATACCACAGATAAGA 57.193 37.500 0.00 0.00 0.00 2.10
2527 6258 7.864108 TTTCATTGACCATACCACAGATAAG 57.136 36.000 0.00 0.00 0.00 1.73
2529 6260 8.821686 ATTTTTCATTGACCATACCACAGATA 57.178 30.769 0.00 0.00 0.00 1.98
2530 6261 7.616935 AGATTTTTCATTGACCATACCACAGAT 59.383 33.333 0.00 0.00 0.00 2.90
2532 6263 7.031372 CAGATTTTTCATTGACCATACCACAG 58.969 38.462 0.00 0.00 0.00 3.66
2542 6275 9.573133 CAAGGGTATTACAGATTTTTCATTGAC 57.427 33.333 0.00 0.00 0.00 3.18
2626 6361 6.880822 TGAGGTCGAATTTATGTTCTTACG 57.119 37.500 0.00 0.00 0.00 3.18
2637 6376 3.697045 TGTGGTGTTTTGAGGTCGAATTT 59.303 39.130 0.00 0.00 0.00 1.82
2646 6385 9.988350 GAGTATAACATATTGTGGTGTTTTGAG 57.012 33.333 0.00 0.00 39.18 3.02
2697 6436 7.121911 GTGATGCATGTATGATATTCGTATGC 58.878 38.462 2.46 0.00 29.22 3.14
2723 6462 2.409715 TCAAGTACTCGTACGTGAGACG 59.590 50.000 22.86 6.46 45.05 4.18
2817 6556 7.011950 GCTTGTGTGTATGCTACCATTGTATTA 59.988 37.037 0.00 0.00 32.85 0.98
2823 6562 3.016736 GGCTTGTGTGTATGCTACCATT 58.983 45.455 0.00 0.00 32.85 3.16
2868 6609 3.026694 GCCCTCTGATTGCTACCATTTT 58.973 45.455 0.00 0.00 0.00 1.82
2903 6644 4.694760 ATAGATGTGCTGAATGTGCCTA 57.305 40.909 0.00 0.00 0.00 3.93
2957 6698 7.128331 CGTTTTCATACTGATTTGCTATGAGG 58.872 38.462 0.00 0.00 30.44 3.86
3032 6773 2.225467 GAGCAGCTCCTCTGTTTGTTT 58.775 47.619 11.84 0.00 44.66 2.83
3035 6776 1.738350 CATGAGCAGCTCCTCTGTTTG 59.262 52.381 20.16 2.74 44.66 2.93
3041 6782 0.461693 GTGACCATGAGCAGCTCCTC 60.462 60.000 20.16 0.00 0.00 3.71
3067 6808 3.537874 CCGTCCCCATCCGAGTCC 61.538 72.222 0.00 0.00 0.00 3.85
3087 6828 2.269241 CCCCTCTGGCGAAGAACC 59.731 66.667 0.00 0.00 33.37 3.62
3088 6829 2.269241 CCCCCTCTGGCGAAGAAC 59.731 66.667 0.00 0.00 33.37 3.01
3089 6830 2.121832 TCCCCCTCTGGCGAAGAA 59.878 61.111 0.00 0.00 33.37 2.52
3090 6831 2.683933 GTCCCCCTCTGGCGAAGA 60.684 66.667 0.00 0.00 0.00 2.87
3091 6832 4.148825 CGTCCCCCTCTGGCGAAG 62.149 72.222 0.00 0.00 0.00 3.79
3158 6899 4.694233 AGCAGCAGCACCACTCCG 62.694 66.667 3.17 0.00 45.49 4.63
3159 6900 3.054503 CAGCAGCAGCACCACTCC 61.055 66.667 3.17 0.00 45.49 3.85
3160 6901 3.735029 GCAGCAGCAGCACCACTC 61.735 66.667 4.63 0.00 45.49 3.51
3174 6915 2.989881 TACCTCGCTCGGTGTGCAG 61.990 63.158 4.23 0.00 37.93 4.41
3175 6916 2.986979 TACCTCGCTCGGTGTGCA 60.987 61.111 4.23 0.00 37.93 4.57
3176 6917 2.506438 GTACCTCGCTCGGTGTGC 60.506 66.667 4.23 0.00 37.93 4.57
3177 6918 1.154016 CAGTACCTCGCTCGGTGTG 60.154 63.158 4.23 0.00 37.93 3.82
3178 6919 2.341101 CCAGTACCTCGCTCGGTGT 61.341 63.158 4.23 0.00 37.93 4.16
3179 6920 2.490217 CCAGTACCTCGCTCGGTG 59.510 66.667 4.23 0.00 37.93 4.94
3180 6921 3.450115 GCCAGTACCTCGCTCGGT 61.450 66.667 0.00 0.00 41.10 4.69
3181 6922 4.208686 GGCCAGTACCTCGCTCGG 62.209 72.222 0.00 0.00 0.00 4.63
3182 6923 4.554363 CGGCCAGTACCTCGCTCG 62.554 72.222 2.24 0.00 0.00 5.03
3183 6924 4.874977 GCGGCCAGTACCTCGCTC 62.875 72.222 2.24 0.00 44.10 5.03
3197 6938 4.521062 CTCCTTCCTCAGGCGCGG 62.521 72.222 8.83 0.00 43.55 6.46
3198 6939 4.521062 CCTCCTTCCTCAGGCGCG 62.521 72.222 0.00 0.00 43.55 6.86
3199 6940 4.168291 CCCTCCTTCCTCAGGCGC 62.168 72.222 0.00 0.00 43.55 6.53
3200 6941 2.364317 TCCCTCCTTCCTCAGGCG 60.364 66.667 0.00 0.00 43.55 5.52
3201 6942 2.069430 CCTCCCTCCTTCCTCAGGC 61.069 68.421 0.00 0.00 43.55 4.85
3202 6943 1.383803 CCCTCCCTCCTTCCTCAGG 60.384 68.421 0.00 0.00 45.64 3.86
3203 6944 1.383803 CCCCTCCCTCCTTCCTCAG 60.384 68.421 0.00 0.00 0.00 3.35
3204 6945 2.182858 GACCCCTCCCTCCTTCCTCA 62.183 65.000 0.00 0.00 0.00 3.86
3205 6946 1.383386 GACCCCTCCCTCCTTCCTC 60.383 68.421 0.00 0.00 0.00 3.71
3206 6947 2.184631 TGACCCCTCCCTCCTTCCT 61.185 63.158 0.00 0.00 0.00 3.36
3207 6948 1.996187 GTGACCCCTCCCTCCTTCC 60.996 68.421 0.00 0.00 0.00 3.46
3208 6949 2.359967 CGTGACCCCTCCCTCCTTC 61.360 68.421 0.00 0.00 0.00 3.46
3209 6950 2.284699 CGTGACCCCTCCCTCCTT 60.285 66.667 0.00 0.00 0.00 3.36
3220 6961 4.452733 CCTTCCTCGGGCGTGACC 62.453 72.222 0.00 0.00 37.93 4.02
3221 6962 3.358076 CTCCTTCCTCGGGCGTGAC 62.358 68.421 0.00 0.00 0.00 3.67
3222 6963 3.068691 CTCCTTCCTCGGGCGTGA 61.069 66.667 0.00 0.00 0.00 4.35
3223 6964 3.068691 TCTCCTTCCTCGGGCGTG 61.069 66.667 0.00 0.00 0.00 5.34
3224 6965 2.756283 CTCTCCTTCCTCGGGCGT 60.756 66.667 0.00 0.00 0.00 5.68
3225 6966 3.532155 CCTCTCCTTCCTCGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
3226 6967 2.042843 TCCTCTCCTTCCTCGGGC 60.043 66.667 0.00 0.00 0.00 6.13
3227 6968 2.131067 GCTCCTCTCCTTCCTCGGG 61.131 68.421 0.00 0.00 0.00 5.14
3228 6969 0.758685 ATGCTCCTCTCCTTCCTCGG 60.759 60.000 0.00 0.00 0.00 4.63
3229 6970 0.673437 GATGCTCCTCTCCTTCCTCG 59.327 60.000 0.00 0.00 0.00 4.63
3230 6971 0.673437 CGATGCTCCTCTCCTTCCTC 59.327 60.000 0.00 0.00 0.00 3.71
3231 6972 0.758685 CCGATGCTCCTCTCCTTCCT 60.759 60.000 0.00 0.00 0.00 3.36
3232 6973 1.745264 CCGATGCTCCTCTCCTTCC 59.255 63.158 0.00 0.00 0.00 3.46
3233 6974 1.068921 GCCGATGCTCCTCTCCTTC 59.931 63.158 0.00 0.00 33.53 3.46
3234 6975 2.790791 CGCCGATGCTCCTCTCCTT 61.791 63.158 0.00 0.00 34.43 3.36
3235 6976 3.222855 CGCCGATGCTCCTCTCCT 61.223 66.667 0.00 0.00 34.43 3.69
3236 6977 4.292178 CCGCCGATGCTCCTCTCC 62.292 72.222 0.00 0.00 34.43 3.71
3237 6978 4.292178 CCCGCCGATGCTCCTCTC 62.292 72.222 0.00 0.00 34.43 3.20
3238 6979 4.841617 TCCCGCCGATGCTCCTCT 62.842 66.667 0.00 0.00 34.43 3.69
3239 6980 4.292178 CTCCCGCCGATGCTCCTC 62.292 72.222 0.00 0.00 34.43 3.71
3240 6981 4.841617 TCTCCCGCCGATGCTCCT 62.842 66.667 0.00 0.00 34.43 3.69
3241 6982 3.620785 ATCTCCCGCCGATGCTCC 61.621 66.667 0.00 0.00 34.43 4.70
3242 6983 2.356793 CATCTCCCGCCGATGCTC 60.357 66.667 0.00 0.00 32.74 4.26
3243 6984 3.933722 CCATCTCCCGCCGATGCT 61.934 66.667 0.00 0.00 37.52 3.79
3244 6985 3.873026 CTCCATCTCCCGCCGATGC 62.873 68.421 0.00 0.00 37.52 3.91
3245 6986 2.341543 CTCCATCTCCCGCCGATG 59.658 66.667 0.00 0.00 38.35 3.84
3246 6987 2.919856 CCTCCATCTCCCGCCGAT 60.920 66.667 0.00 0.00 0.00 4.18
3250 6991 4.247380 CAGGCCTCCATCTCCCGC 62.247 72.222 0.00 0.00 0.00 6.13
3251 6992 4.247380 GCAGGCCTCCATCTCCCG 62.247 72.222 0.00 0.00 0.00 5.14
3252 6993 3.883549 GGCAGGCCTCCATCTCCC 61.884 72.222 0.00 0.00 0.00 4.30
3253 6994 3.883549 GGGCAGGCCTCCATCTCC 61.884 72.222 19.17 7.58 36.10 3.71
3254 6995 4.247380 CGGGCAGGCCTCCATCTC 62.247 72.222 19.17 2.76 36.10 2.75
3273 7014 3.822192 TCTCCGGCGACATGGACG 61.822 66.667 9.30 9.58 0.00 4.79
3274 7015 2.202756 GTCTCCGGCGACATGGAC 60.203 66.667 19.57 5.24 34.11 4.02
3275 7016 3.822192 CGTCTCCGGCGACATGGA 61.822 66.667 23.51 0.00 33.54 3.41
3295 7036 3.522731 CCCCAGCTCCTCGACGAG 61.523 72.222 18.08 18.08 0.00 4.18
3296 7037 4.043100 TCCCCAGCTCCTCGACGA 62.043 66.667 0.00 0.00 0.00 4.20
3297 7038 3.827898 GTCCCCAGCTCCTCGACG 61.828 72.222 0.00 0.00 0.00 5.12
3298 7039 3.462678 GGTCCCCAGCTCCTCGAC 61.463 72.222 0.00 0.00 0.00 4.20
3322 7063 4.951963 CTACAGCTAGCCGCCGCC 62.952 72.222 12.13 0.00 40.39 6.13
3330 7071 6.765313 TAGGGTTCCTCCAGCTACAGCTAG 62.765 54.167 2.85 0.00 41.66 3.42
3331 7072 4.984251 TAGGGTTCCTCCAGCTACAGCTA 61.984 52.174 2.85 0.00 41.66 3.32
3332 7073 4.309916 TAGGGTTCCTCCAGCTACAGCT 62.310 54.545 0.00 0.00 43.27 4.24
3333 7074 1.222113 GGGTTCCTCCAGCTACAGC 59.778 63.158 0.00 0.00 42.49 4.40
3334 7075 2.035632 CTAGGGTTCCTCCAGCTACAG 58.964 57.143 0.00 0.00 38.11 2.74
3335 7076 1.965318 GCTAGGGTTCCTCCAGCTACA 60.965 57.143 0.00 0.00 38.11 2.74
3336 7077 0.753867 GCTAGGGTTCCTCCAGCTAC 59.246 60.000 0.00 0.00 38.11 3.58
3337 7078 0.398664 GGCTAGGGTTCCTCCAGCTA 60.399 60.000 8.18 0.00 38.11 3.32
3338 7079 1.690985 GGCTAGGGTTCCTCCAGCT 60.691 63.158 8.18 0.00 38.11 4.24
3339 7080 1.690985 AGGCTAGGGTTCCTCCAGC 60.691 63.158 0.00 1.20 38.11 4.85
3340 7081 1.977293 GCAGGCTAGGGTTCCTCCAG 61.977 65.000 0.00 0.00 38.11 3.86
3341 7082 1.995626 GCAGGCTAGGGTTCCTCCA 60.996 63.158 0.00 0.00 38.11 3.86
3342 7083 2.911928 GCAGGCTAGGGTTCCTCC 59.088 66.667 0.00 0.00 34.61 4.30
3343 7084 2.501610 CGCAGGCTAGGGTTCCTC 59.498 66.667 0.00 0.00 34.61 3.71
3344 7085 3.083997 CCGCAGGCTAGGGTTCCT 61.084 66.667 0.59 0.00 46.14 3.36
3359 7100 3.068691 TTGTCCCTCTCGCTCCCG 61.069 66.667 0.00 0.00 0.00 5.14
3360 7101 2.726351 CCTTGTCCCTCTCGCTCCC 61.726 68.421 0.00 0.00 0.00 4.30
3361 7102 2.726351 CCCTTGTCCCTCTCGCTCC 61.726 68.421 0.00 0.00 0.00 4.70
3362 7103 1.045911 ATCCCTTGTCCCTCTCGCTC 61.046 60.000 0.00 0.00 0.00 5.03
3363 7104 0.618968 AATCCCTTGTCCCTCTCGCT 60.619 55.000 0.00 0.00 0.00 4.93
3364 7105 0.462759 CAATCCCTTGTCCCTCTCGC 60.463 60.000 0.00 0.00 0.00 5.03
3365 7106 1.137872 CTCAATCCCTTGTCCCTCTCG 59.862 57.143 0.00 0.00 33.87 4.04
3366 7107 2.093235 CACTCAATCCCTTGTCCCTCTC 60.093 54.545 0.00 0.00 33.87 3.20
3367 7108 1.912043 CACTCAATCCCTTGTCCCTCT 59.088 52.381 0.00 0.00 33.87 3.69
3368 7109 1.630878 ACACTCAATCCCTTGTCCCTC 59.369 52.381 0.00 0.00 33.87 4.30
3369 7110 1.352352 CACACTCAATCCCTTGTCCCT 59.648 52.381 0.00 0.00 33.87 4.20
3370 7111 1.351017 TCACACTCAATCCCTTGTCCC 59.649 52.381 0.00 0.00 33.87 4.46
3371 7112 2.859165 TCACACTCAATCCCTTGTCC 57.141 50.000 0.00 0.00 33.87 4.02
3372 7113 4.446371 CCTATCACACTCAATCCCTTGTC 58.554 47.826 0.00 0.00 33.87 3.18
3373 7114 3.200825 CCCTATCACACTCAATCCCTTGT 59.799 47.826 0.00 0.00 33.87 3.16
3374 7115 3.455910 TCCCTATCACACTCAATCCCTTG 59.544 47.826 0.00 0.00 0.00 3.61
3375 7116 3.736094 TCCCTATCACACTCAATCCCTT 58.264 45.455 0.00 0.00 0.00 3.95
3376 7117 3.421394 TCCCTATCACACTCAATCCCT 57.579 47.619 0.00 0.00 0.00 4.20
3377 7118 3.181450 CCTTCCCTATCACACTCAATCCC 60.181 52.174 0.00 0.00 0.00 3.85
3378 7119 3.181450 CCCTTCCCTATCACACTCAATCC 60.181 52.174 0.00 0.00 0.00 3.01
3379 7120 3.181450 CCCCTTCCCTATCACACTCAATC 60.181 52.174 0.00 0.00 0.00 2.67
3380 7121 2.780010 CCCCTTCCCTATCACACTCAAT 59.220 50.000 0.00 0.00 0.00 2.57
3381 7122 2.196595 CCCCTTCCCTATCACACTCAA 58.803 52.381 0.00 0.00 0.00 3.02
3382 7123 1.364678 TCCCCTTCCCTATCACACTCA 59.635 52.381 0.00 0.00 0.00 3.41
3383 7124 2.176247 TCCCCTTCCCTATCACACTC 57.824 55.000 0.00 0.00 0.00 3.51
3384 7125 2.695585 GATCCCCTTCCCTATCACACT 58.304 52.381 0.00 0.00 0.00 3.55
3385 7126 1.700186 GGATCCCCTTCCCTATCACAC 59.300 57.143 0.00 0.00 0.00 3.82
3386 7127 1.296832 TGGATCCCCTTCCCTATCACA 59.703 52.381 9.90 0.00 34.67 3.58
3387 7128 1.981495 CTGGATCCCCTTCCCTATCAC 59.019 57.143 9.90 0.00 34.67 3.06
3388 7129 1.132397 CCTGGATCCCCTTCCCTATCA 60.132 57.143 9.90 0.00 34.67 2.15
3389 7130 1.662686 CCTGGATCCCCTTCCCTATC 58.337 60.000 9.90 0.00 34.67 2.08
3390 7131 0.197145 CCCTGGATCCCCTTCCCTAT 59.803 60.000 9.90 0.00 34.67 2.57
3391 7132 0.939443 TCCCTGGATCCCCTTCCCTA 60.939 60.000 9.90 0.00 34.67 3.53
3392 7133 2.272170 TCCCTGGATCCCCTTCCCT 61.272 63.158 9.90 0.00 34.67 4.20
3393 7134 1.772156 CTCCCTGGATCCCCTTCCC 60.772 68.421 9.90 0.00 34.67 3.97
3394 7135 1.772156 CCTCCCTGGATCCCCTTCC 60.772 68.421 9.90 0.00 38.35 3.46
3395 7136 1.772156 CCCTCCCTGGATCCCCTTC 60.772 68.421 9.90 0.00 38.35 3.46
3396 7137 2.378522 CCCTCCCTGGATCCCCTT 59.621 66.667 9.90 0.00 38.35 3.95
3397 7138 2.967014 ACCCTCCCTGGATCCCCT 60.967 66.667 9.90 0.00 38.35 4.79
3398 7139 2.448736 GACCCTCCCTGGATCCCC 60.449 72.222 9.90 0.00 38.35 4.81
3399 7140 1.768077 CTGACCCTCCCTGGATCCC 60.768 68.421 9.90 0.00 38.35 3.85
3400 7141 1.003573 ACTGACCCTCCCTGGATCC 59.996 63.158 4.20 4.20 38.35 3.36
3401 7142 4.818314 ACTGACCCTCCCTGGATC 57.182 61.111 0.00 0.00 38.35 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.