Multiple sequence alignment - TraesCS7D01G510200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G510200
chr7D
100.000
3908
0
0
1
3908
613393435
613397342
0.000000e+00
7217.0
1
TraesCS7D01G510200
chr7D
89.232
1003
90
10
1148
2136
613406395
613407393
0.000000e+00
1238.0
2
TraesCS7D01G510200
chr7D
77.215
711
100
40
327
990
613405532
613406227
3.710000e-95
359.0
3
TraesCS7D01G510200
chr7D
87.432
183
13
6
2688
2862
613407390
613407570
6.620000e-48
202.0
4
TraesCS7D01G510200
chr7A
97.555
3436
62
8
477
3908
704776161
704779578
0.000000e+00
5860.0
5
TraesCS7D01G510200
chr7A
88.922
1002
95
8
1148
2136
704792334
704793332
0.000000e+00
1221.0
6
TraesCS7D01G510200
chr7A
91.195
318
21
3
162
475
704691395
704691709
3.610000e-115
425.0
7
TraesCS7D01G510200
chr7A
79.723
577
85
25
327
884
704791470
704792033
4.740000e-104
388.0
8
TraesCS7D01G510200
chr7A
86.885
183
13
7
2688
2862
704793329
704793508
1.110000e-45
195.0
9
TraesCS7D01G510200
chr7A
93.939
66
3
1
94
158
727776038
727776103
8.940000e-17
99.0
10
TraesCS7D01G510200
chr7B
95.593
2882
114
7
870
3744
703165574
703168449
0.000000e+00
4606.0
11
TraesCS7D01G510200
chr7B
88.723
1002
97
8
1148
2136
703246167
703247165
0.000000e+00
1210.0
12
TraesCS7D01G510200
chr7B
89.628
646
40
12
160
794
703164927
703165556
0.000000e+00
797.0
13
TraesCS7D01G510200
chr7B
77.946
594
83
33
327
884
703245285
703245866
1.050000e-85
327.0
14
TraesCS7D01G510200
chr3A
85.714
77
11
0
3832
3908
22684189
22684113
9.000000e-12
82.4
15
TraesCS7D01G510200
chr1D
85.526
76
11
0
3833
3908
492503836
492503761
3.240000e-11
80.5
16
TraesCS7D01G510200
chr1A
85.526
76
11
0
3833
3908
590835684
590835609
3.240000e-11
80.5
17
TraesCS7D01G510200
chr6D
87.879
66
8
0
94
159
454746123
454746188
1.160000e-10
78.7
18
TraesCS7D01G510200
chr2B
91.837
49
4
0
90
138
787977642
787977594
7.010000e-08
69.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G510200
chr7D
613393435
613397342
3907
False
7217.000000
7217
100.000000
1
3908
1
chr7D.!!$F1
3907
1
TraesCS7D01G510200
chr7D
613405532
613407570
2038
False
599.666667
1238
84.626333
327
2862
3
chr7D.!!$F2
2535
2
TraesCS7D01G510200
chr7A
704776161
704779578
3417
False
5860.000000
5860
97.555000
477
3908
1
chr7A.!!$F2
3431
3
TraesCS7D01G510200
chr7A
704791470
704793508
2038
False
601.333333
1221
85.176667
327
2862
3
chr7A.!!$F4
2535
4
TraesCS7D01G510200
chr7B
703164927
703168449
3522
False
2701.500000
4606
92.610500
160
3744
2
chr7B.!!$F1
3584
5
TraesCS7D01G510200
chr7B
703245285
703247165
1880
False
768.500000
1210
83.334500
327
2136
2
chr7B.!!$F2
1809
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
113
114
0.105246
ATTGAAACAACCCTGGGGCA
60.105
50.000
18.88
2.27
39.32
5.36
F
119
120
0.116940
ACAACCCTGGGGCAAATCAT
59.883
50.000
18.88
0.00
39.32
2.45
F
203
204
0.318441
TGTCAAGCTAGCGCACTCTT
59.682
50.000
11.47
6.18
39.10
2.85
F
609
648
0.535780
CCCAGAGCAAAGCAGTCACA
60.536
55.000
0.00
0.00
0.00
3.58
F
1249
1381
2.124109
TCCAGTGCCCGTTTTGCA
60.124
55.556
0.00
0.00
36.12
4.08
F
2564
2708
2.348243
CAAACCTCCCGCGGGTTA
59.652
61.111
41.57
24.58
45.15
2.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1707
1851
1.610038
TGTGCTTTGTGATCAGCAAGG
59.390
47.619
8.76
10.99
39.10
3.61
R
2276
2420
5.248870
AGGTTGATTTTAGCTATTTGGCG
57.751
39.130
0.00
0.00
37.29
5.69
R
2391
2535
2.044946
GCTGTTTGGCGGGAGGAT
60.045
61.111
0.00
0.00
0.00
3.24
R
2564
2708
0.251341
AATCCCGCAAACCAGAAGCT
60.251
50.000
0.00
0.00
0.00
3.74
R
2620
2764
2.513753
ACGCATCTGGACCATTTTTGA
58.486
42.857
0.00
0.00
0.00
2.69
R
3728
3883
1.364328
AGACTGTGGGAAGGAGGAGAT
59.636
52.381
0.00
0.00
0.00
2.75
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
19
20
2.887151
CCATCTCAACTGGGGAGTTT
57.113
50.000
0.00
0.00
34.04
2.66
20
21
3.160679
CCATCTCAACTGGGGAGTTTT
57.839
47.619
0.00
0.00
34.04
2.43
21
22
3.084786
CCATCTCAACTGGGGAGTTTTC
58.915
50.000
0.00
0.00
34.04
2.29
22
23
3.245052
CCATCTCAACTGGGGAGTTTTCT
60.245
47.826
0.00
0.00
34.04
2.52
23
24
4.401925
CATCTCAACTGGGGAGTTTTCTT
58.598
43.478
0.00
0.00
34.04
2.52
24
25
4.086706
TCTCAACTGGGGAGTTTTCTTC
57.913
45.455
0.00
0.00
34.04
2.87
25
26
3.149981
CTCAACTGGGGAGTTTTCTTCC
58.850
50.000
0.00
0.00
44.82
3.46
26
27
1.880027
CAACTGGGGAGTTTTCTTCCG
59.120
52.381
0.00
0.00
46.49
4.30
27
28
1.430992
ACTGGGGAGTTTTCTTCCGA
58.569
50.000
0.00
0.00
46.49
4.55
28
29
1.772453
ACTGGGGAGTTTTCTTCCGAA
59.228
47.619
0.00
0.00
46.49
4.30
29
30
2.375509
ACTGGGGAGTTTTCTTCCGAAT
59.624
45.455
0.00
0.00
46.49
3.34
30
31
3.181433
ACTGGGGAGTTTTCTTCCGAATT
60.181
43.478
0.00
0.00
46.49
2.17
31
32
3.826729
CTGGGGAGTTTTCTTCCGAATTT
59.173
43.478
0.00
0.00
46.49
1.82
32
33
3.572255
TGGGGAGTTTTCTTCCGAATTTG
59.428
43.478
0.00
0.00
46.49
2.32
33
34
3.824443
GGGGAGTTTTCTTCCGAATTTGA
59.176
43.478
0.00
0.00
46.49
2.69
34
35
4.082733
GGGGAGTTTTCTTCCGAATTTGAG
60.083
45.833
0.00
0.00
46.49
3.02
35
36
4.519350
GGGAGTTTTCTTCCGAATTTGAGT
59.481
41.667
0.00
0.00
35.63
3.41
36
37
5.334957
GGGAGTTTTCTTCCGAATTTGAGTC
60.335
44.000
0.00
0.00
35.63
3.36
37
38
5.470437
GGAGTTTTCTTCCGAATTTGAGTCT
59.530
40.000
0.00
0.00
0.00
3.24
38
39
6.649557
GGAGTTTTCTTCCGAATTTGAGTCTA
59.350
38.462
0.00
0.00
0.00
2.59
39
40
7.148557
GGAGTTTTCTTCCGAATTTGAGTCTAG
60.149
40.741
0.00
0.00
0.00
2.43
40
41
6.651225
AGTTTTCTTCCGAATTTGAGTCTAGG
59.349
38.462
0.00
0.00
0.00
3.02
41
42
4.124851
TCTTCCGAATTTGAGTCTAGGC
57.875
45.455
0.00
0.00
0.00
3.93
42
43
3.513912
TCTTCCGAATTTGAGTCTAGGCA
59.486
43.478
0.00
0.00
0.00
4.75
43
44
4.162320
TCTTCCGAATTTGAGTCTAGGCAT
59.838
41.667
0.00
0.00
0.00
4.40
44
45
3.797039
TCCGAATTTGAGTCTAGGCATG
58.203
45.455
0.00
0.00
0.00
4.06
45
46
2.874701
CCGAATTTGAGTCTAGGCATGG
59.125
50.000
0.00
0.00
0.00
3.66
46
47
2.874701
CGAATTTGAGTCTAGGCATGGG
59.125
50.000
0.00
0.00
0.00
4.00
47
48
3.682718
CGAATTTGAGTCTAGGCATGGGT
60.683
47.826
0.00
0.00
0.00
4.51
48
49
3.567478
ATTTGAGTCTAGGCATGGGTC
57.433
47.619
0.00
0.00
0.00
4.46
49
50
2.254152
TTGAGTCTAGGCATGGGTCT
57.746
50.000
0.00
0.00
0.00
3.85
50
51
2.254152
TGAGTCTAGGCATGGGTCTT
57.746
50.000
0.00
0.00
0.00
3.01
51
52
1.833630
TGAGTCTAGGCATGGGTCTTG
59.166
52.381
0.00
0.00
0.00
3.02
52
53
1.834263
GAGTCTAGGCATGGGTCTTGT
59.166
52.381
0.00
0.00
0.00
3.16
53
54
1.556911
AGTCTAGGCATGGGTCTTGTG
59.443
52.381
0.00
0.00
0.00
3.33
54
55
1.279271
GTCTAGGCATGGGTCTTGTGT
59.721
52.381
0.00
0.00
0.00
3.72
55
56
1.985159
TCTAGGCATGGGTCTTGTGTT
59.015
47.619
0.00
0.00
0.00
3.32
56
57
2.027192
TCTAGGCATGGGTCTTGTGTTC
60.027
50.000
0.00
0.00
0.00
3.18
57
58
0.251341
AGGCATGGGTCTTGTGTTCC
60.251
55.000
0.00
0.00
0.00
3.62
58
59
1.586154
GGCATGGGTCTTGTGTTCCG
61.586
60.000
0.00
0.00
0.00
4.30
59
60
0.889186
GCATGGGTCTTGTGTTCCGT
60.889
55.000
0.00
0.00
0.00
4.69
60
61
1.609580
GCATGGGTCTTGTGTTCCGTA
60.610
52.381
0.00
0.00
0.00
4.02
61
62
2.773487
CATGGGTCTTGTGTTCCGTAA
58.227
47.619
0.00
0.00
0.00
3.18
62
63
3.142951
CATGGGTCTTGTGTTCCGTAAA
58.857
45.455
0.00
0.00
0.00
2.01
63
64
3.278668
TGGGTCTTGTGTTCCGTAAAA
57.721
42.857
0.00
0.00
0.00
1.52
64
65
3.207778
TGGGTCTTGTGTTCCGTAAAAG
58.792
45.455
0.00
0.00
0.00
2.27
65
66
2.031420
GGGTCTTGTGTTCCGTAAAAGC
60.031
50.000
0.00
0.00
0.00
3.51
66
67
2.876550
GGTCTTGTGTTCCGTAAAAGCT
59.123
45.455
0.00
0.00
0.00
3.74
67
68
4.060205
GGTCTTGTGTTCCGTAAAAGCTA
58.940
43.478
0.00
0.00
0.00
3.32
68
69
4.084171
GGTCTTGTGTTCCGTAAAAGCTAC
60.084
45.833
0.00
0.00
0.00
3.58
69
70
4.508861
GTCTTGTGTTCCGTAAAAGCTACA
59.491
41.667
0.00
0.00
0.00
2.74
70
71
5.178809
GTCTTGTGTTCCGTAAAAGCTACAT
59.821
40.000
0.00
0.00
0.00
2.29
71
72
5.407387
TCTTGTGTTCCGTAAAAGCTACATC
59.593
40.000
0.00
0.00
0.00
3.06
72
73
4.890088
TGTGTTCCGTAAAAGCTACATCT
58.110
39.130
0.00
0.00
0.00
2.90
73
74
4.927425
TGTGTTCCGTAAAAGCTACATCTC
59.073
41.667
0.00
0.00
0.00
2.75
74
75
4.927425
GTGTTCCGTAAAAGCTACATCTCA
59.073
41.667
0.00
0.00
0.00
3.27
75
76
5.407387
GTGTTCCGTAAAAGCTACATCTCAA
59.593
40.000
0.00
0.00
0.00
3.02
76
77
5.407387
TGTTCCGTAAAAGCTACATCTCAAC
59.593
40.000
0.00
0.00
0.00
3.18
77
78
5.401531
TCCGTAAAAGCTACATCTCAACT
57.598
39.130
0.00
0.00
0.00
3.16
78
79
5.168569
TCCGTAAAAGCTACATCTCAACTG
58.831
41.667
0.00
0.00
0.00
3.16
79
80
5.047590
TCCGTAAAAGCTACATCTCAACTGA
60.048
40.000
0.00
0.00
0.00
3.41
80
81
5.289675
CCGTAAAAGCTACATCTCAACTGAG
59.710
44.000
0.00
0.00
43.36
3.35
81
82
5.289675
CGTAAAAGCTACATCTCAACTGAGG
59.710
44.000
6.87
0.00
42.30
3.86
82
83
5.489792
AAAAGCTACATCTCAACTGAGGA
57.510
39.130
6.87
0.00
42.30
3.71
83
84
5.690464
AAAGCTACATCTCAACTGAGGAT
57.310
39.130
6.87
0.00
42.30
3.24
84
85
4.669206
AGCTACATCTCAACTGAGGATG
57.331
45.455
6.87
10.80
42.30
3.51
85
86
4.029520
AGCTACATCTCAACTGAGGATGT
58.970
43.478
19.45
19.45
42.30
3.06
86
87
4.469227
AGCTACATCTCAACTGAGGATGTT
59.531
41.667
20.14
8.40
42.30
2.71
87
88
5.046014
AGCTACATCTCAACTGAGGATGTTT
60.046
40.000
20.14
10.63
42.30
2.83
88
89
5.645497
GCTACATCTCAACTGAGGATGTTTT
59.355
40.000
20.14
7.46
42.30
2.43
89
90
6.150140
GCTACATCTCAACTGAGGATGTTTTT
59.850
38.462
20.14
7.23
42.30
1.94
90
91
6.323203
ACATCTCAACTGAGGATGTTTTTG
57.677
37.500
6.87
0.00
42.30
2.44
91
92
5.242393
ACATCTCAACTGAGGATGTTTTTGG
59.758
40.000
6.87
0.00
42.30
3.28
92
93
3.569701
TCTCAACTGAGGATGTTTTTGGC
59.430
43.478
6.87
0.00
42.30
4.52
93
94
2.627699
TCAACTGAGGATGTTTTTGGCC
59.372
45.455
0.00
0.00
0.00
5.36
94
95
2.364970
CAACTGAGGATGTTTTTGGCCA
59.635
45.455
0.00
0.00
0.00
5.36
95
96
2.893424
ACTGAGGATGTTTTTGGCCAT
58.107
42.857
6.09
0.00
0.00
4.40
96
97
3.242011
ACTGAGGATGTTTTTGGCCATT
58.758
40.909
6.09
0.00
0.00
3.16
97
98
3.007182
ACTGAGGATGTTTTTGGCCATTG
59.993
43.478
6.09
0.00
0.00
2.82
98
99
3.237746
TGAGGATGTTTTTGGCCATTGA
58.762
40.909
6.09
0.00
0.00
2.57
99
100
3.645212
TGAGGATGTTTTTGGCCATTGAA
59.355
39.130
6.09
0.00
0.00
2.69
100
101
4.102210
TGAGGATGTTTTTGGCCATTGAAA
59.898
37.500
6.09
0.42
0.00
2.69
101
102
4.388485
AGGATGTTTTTGGCCATTGAAAC
58.612
39.130
22.92
22.92
33.72
2.78
102
103
4.133078
GGATGTTTTTGGCCATTGAAACA
58.867
39.130
29.20
29.20
43.56
2.83
103
104
4.578105
GGATGTTTTTGGCCATTGAAACAA
59.422
37.500
30.03
20.23
42.93
2.83
104
105
4.954092
TGTTTTTGGCCATTGAAACAAC
57.046
36.364
26.97
14.99
38.58
3.32
105
106
3.691609
TGTTTTTGGCCATTGAAACAACC
59.308
39.130
26.97
11.46
38.58
3.77
106
107
2.629336
TTTGGCCATTGAAACAACCC
57.371
45.000
6.09
0.00
0.00
4.11
107
108
1.799933
TTGGCCATTGAAACAACCCT
58.200
45.000
6.09
0.00
0.00
4.34
108
109
1.047002
TGGCCATTGAAACAACCCTG
58.953
50.000
0.00
0.00
0.00
4.45
109
110
0.321346
GGCCATTGAAACAACCCTGG
59.679
55.000
0.00
0.00
0.00
4.45
110
111
0.321346
GCCATTGAAACAACCCTGGG
59.679
55.000
12.28
12.28
0.00
4.45
111
112
0.975887
CCATTGAAACAACCCTGGGG
59.024
55.000
18.88
7.87
42.03
4.96
112
113
0.321346
CATTGAAACAACCCTGGGGC
59.679
55.000
18.88
0.00
39.32
5.80
113
114
0.105246
ATTGAAACAACCCTGGGGCA
60.105
50.000
18.88
2.27
39.32
5.36
114
115
0.325671
TTGAAACAACCCTGGGGCAA
60.326
50.000
18.88
8.28
39.32
4.52
115
116
0.325671
TGAAACAACCCTGGGGCAAA
60.326
50.000
18.88
0.00
39.32
3.68
116
117
1.055849
GAAACAACCCTGGGGCAAAT
58.944
50.000
18.88
0.00
39.32
2.32
117
118
1.001974
GAAACAACCCTGGGGCAAATC
59.998
52.381
18.88
6.03
39.32
2.17
118
119
0.105246
AACAACCCTGGGGCAAATCA
60.105
50.000
18.88
0.00
39.32
2.57
119
120
0.116940
ACAACCCTGGGGCAAATCAT
59.883
50.000
18.88
0.00
39.32
2.45
120
121
0.826062
CAACCCTGGGGCAAATCATC
59.174
55.000
18.88
0.00
39.32
2.92
121
122
0.325577
AACCCTGGGGCAAATCATCC
60.326
55.000
18.88
0.00
39.32
3.51
122
123
1.310715
CCCTGGGGCAAATCATCCA
59.689
57.895
4.27
0.00
0.00
3.41
123
124
0.325484
CCCTGGGGCAAATCATCCAA
60.325
55.000
4.27
0.00
0.00
3.53
124
125
1.693404
CCCTGGGGCAAATCATCCAAT
60.693
52.381
4.27
0.00
0.00
3.16
125
126
1.690352
CCTGGGGCAAATCATCCAATC
59.310
52.381
0.00
0.00
0.00
2.67
126
127
1.690352
CTGGGGCAAATCATCCAATCC
59.310
52.381
0.00
0.00
0.00
3.01
127
128
1.008084
TGGGGCAAATCATCCAATCCA
59.992
47.619
0.00
0.00
0.00
3.41
128
129
2.332117
GGGGCAAATCATCCAATCCAT
58.668
47.619
0.00
0.00
0.00
3.41
129
130
2.707257
GGGGCAAATCATCCAATCCATT
59.293
45.455
0.00
0.00
0.00
3.16
130
131
3.495453
GGGGCAAATCATCCAATCCATTG
60.495
47.826
0.00
0.00
37.52
2.82
131
132
3.135167
GGGCAAATCATCCAATCCATTGT
59.865
43.478
0.00
0.00
36.06
2.71
132
133
4.344679
GGGCAAATCATCCAATCCATTGTA
59.655
41.667
0.00
0.00
36.06
2.41
133
134
5.163322
GGGCAAATCATCCAATCCATTGTAA
60.163
40.000
0.00
0.00
36.06
2.41
134
135
6.347696
GGCAAATCATCCAATCCATTGTAAA
58.652
36.000
0.00
0.00
36.06
2.01
135
136
6.480981
GGCAAATCATCCAATCCATTGTAAAG
59.519
38.462
0.00
0.00
36.06
1.85
136
137
7.043565
GCAAATCATCCAATCCATTGTAAAGT
58.956
34.615
0.00
0.00
36.06
2.66
137
138
7.010738
GCAAATCATCCAATCCATTGTAAAGTG
59.989
37.037
0.00
0.00
36.06
3.16
138
139
6.720112
ATCATCCAATCCATTGTAAAGTGG
57.280
37.500
0.00
0.00
36.06
4.00
139
140
4.955450
TCATCCAATCCATTGTAAAGTGGG
59.045
41.667
0.00
0.00
36.06
4.61
140
141
3.707316
TCCAATCCATTGTAAAGTGGGG
58.293
45.455
0.00
0.00
36.06
4.96
141
142
2.168313
CCAATCCATTGTAAAGTGGGGC
59.832
50.000
0.00
0.00
36.06
5.80
142
143
2.830923
CAATCCATTGTAAAGTGGGGCA
59.169
45.455
0.00
0.00
36.15
5.36
143
144
2.685106
TCCATTGTAAAGTGGGGCAA
57.315
45.000
0.00
0.00
36.15
4.52
144
145
2.964209
TCCATTGTAAAGTGGGGCAAA
58.036
42.857
0.00
0.00
36.15
3.68
145
146
3.515562
TCCATTGTAAAGTGGGGCAAAT
58.484
40.909
0.00
0.00
36.15
2.32
146
147
3.513515
TCCATTGTAAAGTGGGGCAAATC
59.486
43.478
0.00
0.00
36.15
2.17
147
148
3.260380
CCATTGTAAAGTGGGGCAAATCA
59.740
43.478
0.00
0.00
0.00
2.57
148
149
4.080975
CCATTGTAAAGTGGGGCAAATCAT
60.081
41.667
0.00
0.00
0.00
2.45
149
150
5.490159
CATTGTAAAGTGGGGCAAATCATT
58.510
37.500
0.00
0.00
0.00
2.57
150
151
4.799564
TGTAAAGTGGGGCAAATCATTC
57.200
40.909
0.00
0.00
0.00
2.67
151
152
4.155709
TGTAAAGTGGGGCAAATCATTCA
58.844
39.130
0.00
0.00
0.00
2.57
152
153
4.590647
TGTAAAGTGGGGCAAATCATTCAA
59.409
37.500
0.00
0.00
0.00
2.69
153
154
4.914177
AAAGTGGGGCAAATCATTCAAT
57.086
36.364
0.00
0.00
0.00
2.57
154
155
4.476628
AAGTGGGGCAAATCATTCAATC
57.523
40.909
0.00
0.00
0.00
2.67
155
156
2.767960
AGTGGGGCAAATCATTCAATCC
59.232
45.455
0.00
0.00
0.00
3.01
156
157
2.117865
TGGGGCAAATCATTCAATCCC
58.882
47.619
0.00
0.00
0.00
3.85
157
158
1.417517
GGGGCAAATCATTCAATCCCC
59.582
52.381
0.00
0.00
44.32
4.81
158
159
1.417517
GGGCAAATCATTCAATCCCCC
59.582
52.381
0.00
0.00
0.00
5.40
195
196
8.502387
CCATCTTCTATAATTTGTCAAGCTAGC
58.498
37.037
6.62
6.62
0.00
3.42
197
198
5.907197
TCTATAATTTGTCAAGCTAGCGC
57.093
39.130
9.55
0.00
0.00
5.92
203
204
0.318441
TGTCAAGCTAGCGCACTCTT
59.682
50.000
11.47
6.18
39.10
2.85
205
206
0.318441
TCAAGCTAGCGCACTCTTGT
59.682
50.000
24.43
2.46
37.68
3.16
273
274
2.448926
ACCAAATGGCGCCTAAAAAC
57.551
45.000
29.70
0.00
39.32
2.43
286
287
3.324993
CCTAAAAACGCCAACATGCATT
58.675
40.909
0.00
0.00
0.00
3.56
409
426
0.815213
TTGTGCTGAGTGAGTGGTGC
60.815
55.000
0.00
0.00
0.00
5.01
435
452
9.362539
CAGCATTTATTTGAGCTAATGAAGTTT
57.637
29.630
8.49
0.00
35.19
2.66
452
469
7.377766
TGAAGTTTACATGATAAACTGGCTC
57.622
36.000
22.72
18.75
44.27
4.70
475
492
4.920340
CGCTAGTCATAGGAACATGCTAAG
59.080
45.833
0.00
0.00
0.00
2.18
517
534
8.701895
ACCATCTCCGTCAGTTTAATAATAGAA
58.298
33.333
0.00
0.00
0.00
2.10
607
646
1.073722
CCCCAGAGCAAAGCAGTCA
59.926
57.895
0.00
0.00
0.00
3.41
609
648
0.535780
CCCAGAGCAAAGCAGTCACA
60.536
55.000
0.00
0.00
0.00
3.58
650
700
3.245122
CCCTTTGCTGGTAAGGAAACCTA
60.245
47.826
3.28
0.00
44.01
3.08
683
733
4.022464
TCGTTGTTCGTTCATTTTGCTT
57.978
36.364
0.00
0.00
40.80
3.91
692
745
7.389330
TGTTCGTTCATTTTGCTTCCTTCTATA
59.611
33.333
0.00
0.00
0.00
1.31
695
748
7.552687
TCGTTCATTTTGCTTCCTTCTATATGT
59.447
33.333
0.00
0.00
0.00
2.29
743
799
2.959030
TCGAAGATCAATCCCAGTCGAT
59.041
45.455
0.00
0.00
31.66
3.59
804
860
3.191162
CCATCTGATCGGTTTTTGCTCAA
59.809
43.478
0.42
0.00
0.00
3.02
819
876
7.972623
TTTTGCTCAAATTTTGCTTCATTTG
57.027
28.000
12.38
8.09
40.39
2.32
820
877
6.680874
TTGCTCAAATTTTGCTTCATTTGT
57.319
29.167
12.38
0.00
40.09
2.83
1081
1211
8.230486
ACATATCAGAATCAAGAACGTTGTTTC
58.770
33.333
5.00
2.59
0.00
2.78
1249
1381
2.124109
TCCAGTGCCCGTTTTGCA
60.124
55.556
0.00
0.00
36.12
4.08
1707
1851
6.785191
TGAGAAATATGAAAATGAGGAACGC
58.215
36.000
0.00
0.00
0.00
4.84
2564
2708
2.348243
CAAACCTCCCGCGGGTTA
59.652
61.111
41.57
24.58
45.15
2.85
2620
2764
0.776810
TGGGACACCATGTTGGATGT
59.223
50.000
0.00
1.44
43.37
3.06
2641
2785
2.890311
TCAAAAATGGTCCAGATGCGTT
59.110
40.909
0.00
0.00
0.00
4.84
2645
2789
0.677731
ATGGTCCAGATGCGTTGGTG
60.678
55.000
0.00
0.00
37.02
4.17
3615
3769
3.321497
TGTGTTCAACTTGTTTGGTTGC
58.679
40.909
0.00
0.00
42.40
4.17
3653
3808
7.630470
AGTATTTCATTCATCGATTCGAGAC
57.370
36.000
14.81
0.00
39.91
3.36
3683
3838
1.143970
TTCCCGAACCCCAAATCCCT
61.144
55.000
0.00
0.00
0.00
4.20
3728
3883
1.176619
TTTCAGTCTCGACGCCCTCA
61.177
55.000
0.00
0.00
36.20
3.86
3776
3931
1.142262
GGTGTGGTTGTAGGAGTGGTT
59.858
52.381
0.00
0.00
0.00
3.67
3777
3932
2.218603
GTGTGGTTGTAGGAGTGGTTG
58.781
52.381
0.00
0.00
0.00
3.77
3778
3933
1.841277
TGTGGTTGTAGGAGTGGTTGT
59.159
47.619
0.00
0.00
0.00
3.32
3779
3934
2.158871
TGTGGTTGTAGGAGTGGTTGTC
60.159
50.000
0.00
0.00
0.00
3.18
3780
3935
2.120312
TGGTTGTAGGAGTGGTTGTCA
58.880
47.619
0.00
0.00
0.00
3.58
3781
3936
2.104111
TGGTTGTAGGAGTGGTTGTCAG
59.896
50.000
0.00
0.00
0.00
3.51
3782
3937
2.367567
GGTTGTAGGAGTGGTTGTCAGA
59.632
50.000
0.00
0.00
0.00
3.27
3791
3946
5.190528
AGGAGTGGTTGTCAGATACATCAAT
59.809
40.000
0.00
0.00
38.10
2.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
2.887151
AAACTCCCCAGTTGAGATGG
57.113
50.000
0.00
0.00
42.45
3.51
1
2
4.026356
AGAAAACTCCCCAGTTGAGATG
57.974
45.455
0.00
0.00
42.45
2.90
2
3
4.507512
GGAAGAAAACTCCCCAGTTGAGAT
60.508
45.833
0.00
0.00
42.45
2.75
3
4
3.181443
GGAAGAAAACTCCCCAGTTGAGA
60.181
47.826
0.00
0.00
42.45
3.27
4
5
3.149981
GGAAGAAAACTCCCCAGTTGAG
58.850
50.000
0.00
0.00
42.45
3.02
5
6
2.486548
CGGAAGAAAACTCCCCAGTTGA
60.487
50.000
0.00
0.00
42.45
3.18
6
7
1.880027
CGGAAGAAAACTCCCCAGTTG
59.120
52.381
0.00
0.00
42.45
3.16
7
8
1.772453
TCGGAAGAAAACTCCCCAGTT
59.228
47.619
0.00
0.00
39.01
3.16
8
9
1.430992
TCGGAAGAAAACTCCCCAGT
58.569
50.000
0.00
0.00
37.03
4.00
20
21
3.513912
TGCCTAGACTCAAATTCGGAAGA
59.486
43.478
0.00
0.00
39.20
2.87
21
22
3.861840
TGCCTAGACTCAAATTCGGAAG
58.138
45.455
0.00
0.00
0.00
3.46
22
23
3.973206
TGCCTAGACTCAAATTCGGAA
57.027
42.857
0.00
0.00
0.00
4.30
23
24
3.432186
CCATGCCTAGACTCAAATTCGGA
60.432
47.826
0.00
0.00
0.00
4.55
24
25
2.874701
CCATGCCTAGACTCAAATTCGG
59.125
50.000
0.00
0.00
0.00
4.30
25
26
2.874701
CCCATGCCTAGACTCAAATTCG
59.125
50.000
0.00
0.00
0.00
3.34
26
27
3.879892
GACCCATGCCTAGACTCAAATTC
59.120
47.826
0.00
0.00
0.00
2.17
27
28
3.525199
AGACCCATGCCTAGACTCAAATT
59.475
43.478
0.00
0.00
0.00
1.82
28
29
3.118531
AGACCCATGCCTAGACTCAAAT
58.881
45.455
0.00
0.00
0.00
2.32
29
30
2.551270
AGACCCATGCCTAGACTCAAA
58.449
47.619
0.00
0.00
0.00
2.69
30
31
2.237143
CAAGACCCATGCCTAGACTCAA
59.763
50.000
0.00
0.00
0.00
3.02
31
32
1.833630
CAAGACCCATGCCTAGACTCA
59.166
52.381
0.00
0.00
0.00
3.41
32
33
1.834263
ACAAGACCCATGCCTAGACTC
59.166
52.381
0.00
0.00
0.00
3.36
33
34
1.556911
CACAAGACCCATGCCTAGACT
59.443
52.381
0.00
0.00
0.00
3.24
34
35
1.279271
ACACAAGACCCATGCCTAGAC
59.721
52.381
0.00
0.00
0.00
2.59
35
36
1.656587
ACACAAGACCCATGCCTAGA
58.343
50.000
0.00
0.00
0.00
2.43
36
37
2.359900
GAACACAAGACCCATGCCTAG
58.640
52.381
0.00
0.00
0.00
3.02
37
38
1.004277
GGAACACAAGACCCATGCCTA
59.996
52.381
0.00
0.00
0.00
3.93
38
39
0.251341
GGAACACAAGACCCATGCCT
60.251
55.000
0.00
0.00
0.00
4.75
39
40
1.586154
CGGAACACAAGACCCATGCC
61.586
60.000
0.00
0.00
0.00
4.40
40
41
0.889186
ACGGAACACAAGACCCATGC
60.889
55.000
0.00
0.00
0.00
4.06
41
42
2.465860
TACGGAACACAAGACCCATG
57.534
50.000
0.00
0.00
0.00
3.66
42
43
3.495434
TTTACGGAACACAAGACCCAT
57.505
42.857
0.00
0.00
0.00
4.00
43
44
3.207778
CTTTTACGGAACACAAGACCCA
58.792
45.455
0.00
0.00
0.00
4.51
44
45
2.031420
GCTTTTACGGAACACAAGACCC
60.031
50.000
0.00
0.00
0.00
4.46
45
46
2.876550
AGCTTTTACGGAACACAAGACC
59.123
45.455
0.00
0.00
0.00
3.85
46
47
4.508861
TGTAGCTTTTACGGAACACAAGAC
59.491
41.667
0.00
0.00
0.00
3.01
47
48
4.695396
TGTAGCTTTTACGGAACACAAGA
58.305
39.130
0.00
0.00
0.00
3.02
48
49
5.408604
AGATGTAGCTTTTACGGAACACAAG
59.591
40.000
0.00
0.00
0.00
3.16
49
50
5.302360
AGATGTAGCTTTTACGGAACACAA
58.698
37.500
0.00
0.00
0.00
3.33
50
51
4.890088
AGATGTAGCTTTTACGGAACACA
58.110
39.130
0.00
0.00
0.00
3.72
51
52
4.927425
TGAGATGTAGCTTTTACGGAACAC
59.073
41.667
0.00
0.00
0.00
3.32
52
53
5.142061
TGAGATGTAGCTTTTACGGAACA
57.858
39.130
0.00
0.00
0.00
3.18
53
54
5.638234
AGTTGAGATGTAGCTTTTACGGAAC
59.362
40.000
0.00
0.00
0.00
3.62
54
55
5.637810
CAGTTGAGATGTAGCTTTTACGGAA
59.362
40.000
0.00
0.00
0.00
4.30
55
56
5.047590
TCAGTTGAGATGTAGCTTTTACGGA
60.048
40.000
0.00
0.00
0.00
4.69
56
57
5.168569
TCAGTTGAGATGTAGCTTTTACGG
58.831
41.667
0.00
0.00
0.00
4.02
57
58
5.289675
CCTCAGTTGAGATGTAGCTTTTACG
59.710
44.000
10.64
0.00
44.74
3.18
58
59
6.398918
TCCTCAGTTGAGATGTAGCTTTTAC
58.601
40.000
10.64
0.00
44.74
2.01
59
60
6.605471
TCCTCAGTTGAGATGTAGCTTTTA
57.395
37.500
10.64
0.00
44.74
1.52
60
61
5.489792
TCCTCAGTTGAGATGTAGCTTTT
57.510
39.130
10.64
0.00
44.74
2.27
61
62
5.046014
ACATCCTCAGTTGAGATGTAGCTTT
60.046
40.000
17.67
2.45
44.74
3.51
62
63
4.469227
ACATCCTCAGTTGAGATGTAGCTT
59.531
41.667
17.67
2.91
44.74
3.74
63
64
4.029520
ACATCCTCAGTTGAGATGTAGCT
58.970
43.478
17.67
0.00
44.74
3.32
64
65
4.399004
ACATCCTCAGTTGAGATGTAGC
57.601
45.455
17.67
0.00
44.74
3.58
65
66
7.361542
CCAAAAACATCCTCAGTTGAGATGTAG
60.362
40.741
18.64
12.73
44.74
2.74
66
67
6.430925
CCAAAAACATCCTCAGTTGAGATGTA
59.569
38.462
18.64
3.32
44.74
2.29
67
68
5.242393
CCAAAAACATCCTCAGTTGAGATGT
59.758
40.000
10.64
13.57
44.74
3.06
68
69
5.706916
CCAAAAACATCCTCAGTTGAGATG
58.293
41.667
10.64
13.05
44.74
2.90
69
70
4.219288
GCCAAAAACATCCTCAGTTGAGAT
59.781
41.667
10.64
0.46
44.74
2.75
70
71
3.569701
GCCAAAAACATCCTCAGTTGAGA
59.430
43.478
10.64
0.00
44.74
3.27
71
72
3.305608
GGCCAAAAACATCCTCAGTTGAG
60.306
47.826
0.00
2.09
41.71
3.02
72
73
2.627699
GGCCAAAAACATCCTCAGTTGA
59.372
45.455
0.00
0.00
0.00
3.18
73
74
2.364970
TGGCCAAAAACATCCTCAGTTG
59.635
45.455
0.61
0.00
0.00
3.16
74
75
2.676748
TGGCCAAAAACATCCTCAGTT
58.323
42.857
0.61
0.00
0.00
3.16
75
76
2.380064
TGGCCAAAAACATCCTCAGT
57.620
45.000
0.61
0.00
0.00
3.41
76
77
3.258872
TCAATGGCCAAAAACATCCTCAG
59.741
43.478
10.96
0.00
0.00
3.35
77
78
3.237746
TCAATGGCCAAAAACATCCTCA
58.762
40.909
10.96
0.00
0.00
3.86
78
79
3.959535
TCAATGGCCAAAAACATCCTC
57.040
42.857
10.96
0.00
0.00
3.71
79
80
4.141528
TGTTTCAATGGCCAAAAACATCCT
60.142
37.500
27.39
2.56
36.86
3.24
80
81
4.133078
TGTTTCAATGGCCAAAAACATCC
58.867
39.130
27.39
12.20
36.86
3.51
81
82
5.505489
GGTTGTTTCAATGGCCAAAAACATC
60.505
40.000
29.64
27.68
40.25
3.06
82
83
4.337836
GGTTGTTTCAATGGCCAAAAACAT
59.662
37.500
29.64
6.84
40.25
2.71
83
84
3.691609
GGTTGTTTCAATGGCCAAAAACA
59.308
39.130
27.39
27.39
39.21
2.83
84
85
3.066064
GGGTTGTTTCAATGGCCAAAAAC
59.934
43.478
24.22
24.22
33.32
2.43
85
86
3.054065
AGGGTTGTTTCAATGGCCAAAAA
60.054
39.130
10.96
8.46
0.00
1.94
86
87
2.507471
AGGGTTGTTTCAATGGCCAAAA
59.493
40.909
10.96
2.49
0.00
2.44
87
88
2.122768
AGGGTTGTTTCAATGGCCAAA
58.877
42.857
10.96
0.00
0.00
3.28
88
89
1.415659
CAGGGTTGTTTCAATGGCCAA
59.584
47.619
10.96
0.00
0.00
4.52
89
90
1.047002
CAGGGTTGTTTCAATGGCCA
58.953
50.000
8.56
8.56
0.00
5.36
90
91
0.321346
CCAGGGTTGTTTCAATGGCC
59.679
55.000
0.00
0.00
0.00
5.36
91
92
0.321346
CCCAGGGTTGTTTCAATGGC
59.679
55.000
0.00
0.00
0.00
4.40
92
93
0.975887
CCCCAGGGTTGTTTCAATGG
59.024
55.000
4.22
0.00
0.00
3.16
93
94
0.321346
GCCCCAGGGTTGTTTCAATG
59.679
55.000
4.22
0.00
37.65
2.82
94
95
0.105246
TGCCCCAGGGTTGTTTCAAT
60.105
50.000
4.22
0.00
37.65
2.57
95
96
0.325671
TTGCCCCAGGGTTGTTTCAA
60.326
50.000
4.22
0.00
37.65
2.69
96
97
0.325671
TTTGCCCCAGGGTTGTTTCA
60.326
50.000
4.22
0.00
37.65
2.69
97
98
1.001974
GATTTGCCCCAGGGTTGTTTC
59.998
52.381
4.22
0.00
37.65
2.78
98
99
1.055849
GATTTGCCCCAGGGTTGTTT
58.944
50.000
4.22
0.00
37.65
2.83
99
100
0.105246
TGATTTGCCCCAGGGTTGTT
60.105
50.000
4.22
0.00
37.65
2.83
100
101
0.116940
ATGATTTGCCCCAGGGTTGT
59.883
50.000
4.22
0.00
37.65
3.32
101
102
0.826062
GATGATTTGCCCCAGGGTTG
59.174
55.000
4.22
0.00
37.65
3.77
102
103
0.325577
GGATGATTTGCCCCAGGGTT
60.326
55.000
4.22
0.00
37.65
4.11
103
104
1.311059
GGATGATTTGCCCCAGGGT
59.689
57.895
4.22
0.00
37.65
4.34
104
105
0.325484
TTGGATGATTTGCCCCAGGG
60.325
55.000
0.00
0.00
38.57
4.45
105
106
1.690352
GATTGGATGATTTGCCCCAGG
59.310
52.381
0.00
0.00
0.00
4.45
106
107
1.690352
GGATTGGATGATTTGCCCCAG
59.310
52.381
0.00
0.00
0.00
4.45
107
108
1.008084
TGGATTGGATGATTTGCCCCA
59.992
47.619
0.00
0.00
0.00
4.96
108
109
1.792115
TGGATTGGATGATTTGCCCC
58.208
50.000
0.00
0.00
0.00
5.80
109
110
3.135167
ACAATGGATTGGATGATTTGCCC
59.865
43.478
4.45
0.00
41.96
5.36
110
111
4.411256
ACAATGGATTGGATGATTTGCC
57.589
40.909
4.45
0.00
41.96
4.52
111
112
7.010738
CACTTTACAATGGATTGGATGATTTGC
59.989
37.037
4.45
0.00
41.96
3.68
112
113
7.493320
CCACTTTACAATGGATTGGATGATTTG
59.507
37.037
4.45
0.00
41.96
2.32
113
114
7.364939
CCCACTTTACAATGGATTGGATGATTT
60.365
37.037
4.45
0.00
41.96
2.17
114
115
6.098695
CCCACTTTACAATGGATTGGATGATT
59.901
38.462
4.45
0.00
41.96
2.57
115
116
5.599656
CCCACTTTACAATGGATTGGATGAT
59.400
40.000
4.45
0.00
41.96
2.45
116
117
4.955450
CCCACTTTACAATGGATTGGATGA
59.045
41.667
4.45
0.00
41.96
2.92
117
118
4.099881
CCCCACTTTACAATGGATTGGATG
59.900
45.833
4.45
0.00
41.96
3.51
118
119
4.289245
CCCCACTTTACAATGGATTGGAT
58.711
43.478
4.45
0.00
41.96
3.41
119
120
3.707316
CCCCACTTTACAATGGATTGGA
58.293
45.455
4.45
0.00
41.96
3.53
120
121
2.168313
GCCCCACTTTACAATGGATTGG
59.832
50.000
4.45
0.00
41.96
3.16
121
122
2.830923
TGCCCCACTTTACAATGGATTG
59.169
45.455
0.00
0.00
43.26
2.67
122
123
3.182887
TGCCCCACTTTACAATGGATT
57.817
42.857
0.00
0.00
38.34
3.01
123
124
2.917713
TGCCCCACTTTACAATGGAT
57.082
45.000
0.00
0.00
38.34
3.41
124
125
2.685106
TTGCCCCACTTTACAATGGA
57.315
45.000
0.00
0.00
38.34
3.41
125
126
3.260380
TGATTTGCCCCACTTTACAATGG
59.740
43.478
0.00
0.00
35.59
3.16
126
127
4.533919
TGATTTGCCCCACTTTACAATG
57.466
40.909
0.00
0.00
0.00
2.82
127
128
5.248020
TGAATGATTTGCCCCACTTTACAAT
59.752
36.000
0.00
0.00
0.00
2.71
128
129
4.590647
TGAATGATTTGCCCCACTTTACAA
59.409
37.500
0.00
0.00
0.00
2.41
129
130
4.155709
TGAATGATTTGCCCCACTTTACA
58.844
39.130
0.00
0.00
0.00
2.41
130
131
4.799564
TGAATGATTTGCCCCACTTTAC
57.200
40.909
0.00
0.00
0.00
2.01
131
132
5.104982
GGATTGAATGATTTGCCCCACTTTA
60.105
40.000
0.00
0.00
0.00
1.85
132
133
4.323715
GGATTGAATGATTTGCCCCACTTT
60.324
41.667
0.00
0.00
0.00
2.66
133
134
3.198417
GGATTGAATGATTTGCCCCACTT
59.802
43.478
0.00
0.00
0.00
3.16
134
135
2.767960
GGATTGAATGATTTGCCCCACT
59.232
45.455
0.00
0.00
0.00
4.00
135
136
2.158914
GGGATTGAATGATTTGCCCCAC
60.159
50.000
0.00
0.00
32.98
4.61
136
137
2.117865
GGGATTGAATGATTTGCCCCA
58.882
47.619
0.00
0.00
32.98
4.96
137
138
1.417517
GGGGATTGAATGATTTGCCCC
59.582
52.381
0.00
0.00
46.15
5.80
138
139
1.417517
GGGGGATTGAATGATTTGCCC
59.582
52.381
0.00
0.00
38.91
5.36
139
140
2.916702
GGGGGATTGAATGATTTGCC
57.083
50.000
0.00
0.00
0.00
4.52
273
274
0.371989
CATTGCAATGCATGTTGGCG
59.628
50.000
25.50
0.00
38.76
5.69
286
287
5.351948
TGTAGATACTACAAGGCATTGCA
57.648
39.130
11.69
0.00
40.27
4.08
409
426
8.922058
AACTTCATTAGCTCAAATAAATGCTG
57.078
30.769
0.00
0.00
37.02
4.41
435
452
3.819564
AGCGAGCCAGTTTATCATGTA
57.180
42.857
0.00
0.00
0.00
2.29
439
456
2.758423
TGACTAGCGAGCCAGTTTATCA
59.242
45.455
0.00
0.00
0.00
2.15
452
469
3.377346
AGCATGTTCCTATGACTAGCG
57.623
47.619
0.00
0.00
0.00
4.26
517
534
1.076777
CCGGCCAGGGATTGACATT
60.077
57.895
2.24
0.00
35.97
2.71
626
673
2.557056
GTTTCCTTACCAGCAAAGGGAC
59.443
50.000
2.23
0.00
43.20
4.46
650
700
2.416547
CGAACAACGATCCAAGCAAGAT
59.583
45.455
0.00
0.00
45.77
2.40
683
733
9.513906
TTCAATTGTTCACAACATATAGAAGGA
57.486
29.630
5.13
0.00
41.79
3.36
718
771
5.068591
TCGACTGGGATTGATCTTCGAATAA
59.931
40.000
0.00
0.00
31.51
1.40
719
772
4.583073
TCGACTGGGATTGATCTTCGAATA
59.417
41.667
0.00
0.00
31.51
1.75
720
773
3.384789
TCGACTGGGATTGATCTTCGAAT
59.615
43.478
0.00
0.00
31.51
3.34
722
775
2.375146
TCGACTGGGATTGATCTTCGA
58.625
47.619
0.00
0.00
0.00
3.71
723
776
2.871182
TCGACTGGGATTGATCTTCG
57.129
50.000
0.00
0.00
0.00
3.79
724
777
2.805099
GCATCGACTGGGATTGATCTTC
59.195
50.000
0.00
0.00
0.00
2.87
726
779
1.071385
GGCATCGACTGGGATTGATCT
59.929
52.381
0.00
0.00
0.00
2.75
727
780
1.202687
TGGCATCGACTGGGATTGATC
60.203
52.381
0.00
0.00
0.00
2.92
743
799
2.279743
GGCAAGGATGGGATGGCA
59.720
61.111
0.00
0.00
39.25
4.92
1249
1381
6.073003
GCTAGTTTGTACACTGCTTCAGAATT
60.073
38.462
0.00
0.00
35.18
2.17
1707
1851
1.610038
TGTGCTTTGTGATCAGCAAGG
59.390
47.619
8.76
10.99
39.10
3.61
2276
2420
5.248870
AGGTTGATTTTAGCTATTTGGCG
57.751
39.130
0.00
0.00
37.29
5.69
2391
2535
2.044946
GCTGTTTGGCGGGAGGAT
60.045
61.111
0.00
0.00
0.00
3.24
2559
2703
0.521735
CGCAAACCAGAAGCTAACCC
59.478
55.000
0.00
0.00
0.00
4.11
2564
2708
0.251341
AATCCCGCAAACCAGAAGCT
60.251
50.000
0.00
0.00
0.00
3.74
2620
2764
2.513753
ACGCATCTGGACCATTTTTGA
58.486
42.857
0.00
0.00
0.00
2.69
3615
3769
3.376234
TGAAATACTACGTCCCTCAGTCG
59.624
47.826
0.00
0.00
0.00
4.18
3641
3796
2.605823
GCTTCCATCGTCTCGAATCGAT
60.606
50.000
5.59
15.43
45.63
3.59
3683
3838
2.354503
GGAGAATGACAGCTGAGAGCAA
60.355
50.000
23.35
0.00
45.56
3.91
3728
3883
1.364328
AGACTGTGGGAAGGAGGAGAT
59.636
52.381
0.00
0.00
0.00
2.75
3776
3931
7.724061
TGGTACTAGCTATTGATGTATCTGACA
59.276
37.037
0.00
0.00
43.97
3.58
3777
3932
8.112016
TGGTACTAGCTATTGATGTATCTGAC
57.888
38.462
0.00
0.00
0.00
3.51
3778
3933
8.577296
GTTGGTACTAGCTATTGATGTATCTGA
58.423
37.037
0.00
0.00
0.00
3.27
3779
3934
8.580720
AGTTGGTACTAGCTATTGATGTATCTG
58.419
37.037
0.00
0.00
31.21
2.90
3780
3935
8.580720
CAGTTGGTACTAGCTATTGATGTATCT
58.419
37.037
0.00
0.00
31.96
1.98
3781
3936
7.329717
GCAGTTGGTACTAGCTATTGATGTATC
59.670
40.741
0.00
0.00
31.96
2.24
3782
3937
7.015682
AGCAGTTGGTACTAGCTATTGATGTAT
59.984
37.037
0.00
0.00
37.15
2.29
3791
3946
4.023980
ACATCAGCAGTTGGTACTAGCTA
58.976
43.478
0.00
0.00
36.95
3.32
3864
4019
3.335579
GCTTTACTAGTGACCTTGGGTG
58.664
50.000
5.39
0.00
35.25
4.61
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.