AutoCloner

Multiple sequence alignment - TraesCS7D01G509700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G509700	chr7D	100.000	3051	0	0	1	3051	612976377	612979427	0.000000e+00	5635.0
1	TraesCS7D01G509700	chr7D	98.502	534	8	0	2518	3051	86828076	86828609	0.000000e+00	942.0
2	TraesCS7D01G509700	chr7D	93.243	74	3	1	2406	2479	565055585	565055656	1.160000e-19	108.0
3	TraesCS7D01G509700	chr7B	88.593	2025	105	52	483	2486	702854966	702853047	0.000000e+00	2344.0
4	TraesCS7D01G509700	chr7B	93.404	1031	44	9	992	2019	702535209	702536218	0.000000e+00	1506.0
5	TraesCS7D01G509700	chr7B	87.158	841	56	16	1650	2487	702824103	702823312	0.000000e+00	907.0
6	TraesCS7D01G509700	chr7B	89.732	448	45	1	1	447	415230290	415229843	3.410000e-159	571.0
7	TraesCS7D01G509700	chr7B	89.342	441	36	4	2065	2498	702536219	702536655	7.440000e-151	544.0
8	TraesCS7D01G509700	chr7B	90.962	343	31	0	2490	2832	723809285	723808943	2.140000e-126	462.0
9	TraesCS7D01G509700	chr7B	89.274	317	19	8	483	797	702825468	702825165	1.720000e-102	383.0
10	TraesCS7D01G509700	chr7B	89.474	266	22	5	483	742	702534919	702535184	6.310000e-87	331.0
11	TraesCS7D01G509700	chr7B	89.147	258	15	4	791	1036	702824350	702824094	2.950000e-80	309.0
12	TraesCS7D01G509700	chr7A	89.957	1394	52	27	673	2031	704387401	704388741	0.000000e+00	1718.0
13	TraesCS7D01G509700	chr7A	93.411	683	34	7	2	673	704379980	704380662	0.000000e+00	1002.0
14	TraesCS7D01G509700	chr7A	91.071	448	38	2	1	447	29700418	29699972	3.360000e-169	604.0
15	TraesCS7D01G509700	chr7A	90.444	450	40	3	1	448	45819738	45819290	9.420000e-165	590.0
16	TraesCS7D01G509700	chr7A	92.417	211	8	3	2069	2275	704388740	704388946	8.270000e-76	294.0
17	TraesCS7D01G509700	chr4B	82.246	1211	120	50	609	1764	641368	640198	0.000000e+00	957.0
18	TraesCS7D01G509700	chr4B	91.778	450	29	6	1	448	630972063	630971620	1.200000e-173	619.0
19	TraesCS7D01G509700	chr4B	86.503	326	23	3	1660	1982	640245	639938	3.770000e-89	339.0
20	TraesCS7D01G509700	chr4B	86.364	220	12	8	2018	2230	639846	639638	1.100000e-54	224.0
21	TraesCS7D01G509700	chr4B	87.647	170	14	3	484	647	641643	641475	1.120000e-44	191.0
22	TraesCS7D01G509700	chr2D	98.127	534	10	0	2518	3051	203135897	203136430	0.000000e+00	931.0
23	TraesCS7D01G509700	chr2D	97.092	447	12	1	1	447	621126114	621125669	0.000000e+00	752.0
24	TraesCS7D01G509700	chr2D	91.071	56	3	1	2423	2478	382382935	382382988	1.170000e-09	75.0
25	TraesCS7D01G509700	chr6B	94.840	562	21	3	2497	3051	2984197	2984757	0.000000e+00	870.0
26	TraesCS7D01G509700	chr6B	92.222	450	31	4	1	448	159942562	159943009	4.290000e-178	634.0
27	TraesCS7D01G509700	chr6B	81.975	405	68	4	1001	1401	142612543	142612946	3.770000e-89	339.0
28	TraesCS7D01G509700	chr4D	81.801	1066	112	39	716	1739	1239175	1240200	0.000000e+00	819.0
29	TraesCS7D01G509700	chr4D	85.410	329	24	13	1660	1982	1240178	1240488	1.360000e-83	320.0
30	TraesCS7D01G509700	chr4D	87.006	177	18	4	483	655	1238743	1238918	8.630000e-46	195.0
31	TraesCS7D01G509700	chr3B	91.800	561	36	5	2497	3050	740985699	740985142	0.000000e+00	773.0
32	TraesCS7D01G509700	chr4A	91.759	449	32	3	1	448	567296066	567296510	1.200000e-173	619.0
33	TraesCS7D01G509700	chr4A	84.142	618	50	25	882	1472	603535115	603534519	3.440000e-154	555.0
34	TraesCS7D01G509700	chr4A	91.124	338	28	2	2490	2826	727361275	727361611	9.970000e-125	457.0
35	TraesCS7D01G509700	chr4A	91.124	338	28	2	2490	2826	727377952	727378288	9.970000e-125	457.0
36	TraesCS7D01G509700	chr4A	83.542	480	38	18	1543	1982	603534499	603534021	7.870000e-111	411.0
37	TraesCS7D01G509700	chr4A	86.802	197	16	5	530	716	603535462	603535266	8.570000e-51	211.0
38	TraesCS7D01G509700	chr1B	89.955	448	41	3	1	447	543887356	543887800	2.640000e-160	575.0
39	TraesCS7D01G509700	chr3A	91.964	336	27	0	2497	2832	18224019	18223684	3.560000e-129	472.0
40	TraesCS7D01G509700	chrUn	91.124	338	28	2	2490	2826	329047543	329047879	9.970000e-125	457.0
41	TraesCS7D01G509700	chr6D	82.222	405	67	4	1001	1401	67569268	67569671	8.100000e-91	344.0
42	TraesCS7D01G509700	chr6A	80.941	404	74	3	1001	1401	85261741	85262144	1.770000e-82	316.0
43	TraesCS7D01G509700	chr5B	83.810	105	14	3	2382	2485	476462372	476462270	2.500000e-16	97.1
44	TraesCS7D01G509700	chr5B	88.571	70	5	2	2406	2474	691188524	691188591	7.010000e-12	82.4
45	TraesCS7D01G509700	chr5B	82.432	74	10	2	2399	2472	29699731	29699801	9.130000e-06	62.1
46	TraesCS7D01G509700	chr2B	83.838	99	13	2	2382	2479	787987680	787987584	1.160000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G509700	chr7D	612976377	612979427	3050	False	5635.000000	5635	100.000000	1	3051	1	chr7D.!!$F3	3050
1	TraesCS7D01G509700	chr7D	86828076	86828609	533	False	942.000000	942	98.502000	2518	3051	1	chr7D.!!$F1	533
2	TraesCS7D01G509700	chr7B	702853047	702854966	1919	True	2344.000000	2344	88.593000	483	2486	1	chr7B.!!$R2	2003
3	TraesCS7D01G509700	chr7B	702534919	702536655	1736	False	793.666667	1506	90.740000	483	2498	3	chr7B.!!$F1	2015
4	TraesCS7D01G509700	chr7B	702823312	702825468	2156	True	533.000000	907	88.526333	483	2487	3	chr7B.!!$R4	2004
5	TraesCS7D01G509700	chr7A	704387401	704388946	1545	False	1006.000000	1718	91.187000	673	2275	2	chr7A.!!$F2	1602
6	TraesCS7D01G509700	chr7A	704379980	704380662	682	False	1002.000000	1002	93.411000	2	673	1	chr7A.!!$F1	671
7	TraesCS7D01G509700	chr4B	639638	641643	2005	True	427.750000	957	85.690000	484	2230	4	chr4B.!!$R2	1746
8	TraesCS7D01G509700	chr2D	203135897	203136430	533	False	931.000000	931	98.127000	2518	3051	1	chr2D.!!$F1	533
9	TraesCS7D01G509700	chr6B	2984197	2984757	560	False	870.000000	870	94.840000	2497	3051	1	chr6B.!!$F1	554
10	TraesCS7D01G509700	chr4D	1238743	1240488	1745	False	444.666667	819	84.739000	483	1982	3	chr4D.!!$F1	1499
11	TraesCS7D01G509700	chr3B	740985142	740985699	557	True	773.000000	773	91.800000	2497	3050	1	chr3B.!!$R1	553
12	TraesCS7D01G509700	chr4A	603534021	603535462	1441	True	392.333333	555	84.828667	530	1982	3	chr4A.!!$R1	1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
421	422	0.322366	TCGGGCATCATTGAGCAACA	60.322	50.0	9.34	0.0	0.0	3.33	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2252	3664	0.469705	TGTGGTGGAAGCTGCCATTT	60.47	50.0	19.04	0.0	40.68	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
129	130	0.950071	GGTACGCGGTGCAGGTTTTA	60.950	55.000	12.47	0.00	0.00	1.52
216	217	9.220767	GACACAAACTCCATACTTTTCTCTATT	57.779	33.333	0.00	0.00	0.00	1.73
253	254	7.753132	TGGATTAATGATTTTTGTACAACGCTC	59.247	33.333	8.07	5.74	0.00	5.03
305	306	2.738013	ACACAGTCCGTAAACCTAGC	57.262	50.000	0.00	0.00	0.00	3.42
403	404	7.845617	TTTTTGGTATAATGCGCGATTTATC	57.154	32.000	12.10	6.38	0.00	1.75
421	422	0.322366	TCGGGCATCATTGAGCAACA	60.322	50.000	9.34	0.00	0.00	3.33
447	448	5.707242	ACAAAGACGTGAAGAGATACTCA	57.293	39.130	0.00	0.00	32.06	3.41
448	449	6.274157	ACAAAGACGTGAAGAGATACTCAT	57.726	37.500	0.00	0.00	32.06	2.90
450	451	8.001881	ACAAAGACGTGAAGAGATACTCATAT	57.998	34.615	0.00	0.00	32.06	1.78
452	453	6.474819	AGACGTGAAGAGATACTCATATCG	57.525	41.667	0.00	0.00	41.95	2.92
453	454	5.410132	AGACGTGAAGAGATACTCATATCGG	59.590	44.000	0.00	0.00	41.95	4.18
455	456	4.456222	CGTGAAGAGATACTCATATCGGGT	59.544	45.833	0.00	0.00	41.95	5.28
456	457	5.642491	CGTGAAGAGATACTCATATCGGGTA	59.358	44.000	0.00	0.00	41.95	3.69
458	459	6.879993	GTGAAGAGATACTCATATCGGGTAGA	59.120	42.308	0.00	0.00	41.95	2.59
459	460	7.390996	GTGAAGAGATACTCATATCGGGTAGAA	59.609	40.741	0.00	0.00	41.95	2.10
460	461	7.942894	TGAAGAGATACTCATATCGGGTAGAAA	59.057	37.037	0.00	0.00	41.95	2.52
461	462	8.707796	AAGAGATACTCATATCGGGTAGAAAA	57.292	34.615	0.00	0.00	41.95	2.29
463	464	8.744652	AGAGATACTCATATCGGGTAGAAAATG	58.255	37.037	0.00	0.00	41.95	2.32
464	465	7.324178	AGATACTCATATCGGGTAGAAAATGC	58.676	38.462	0.00	0.00	41.95	3.56
465	466	5.290493	ACTCATATCGGGTAGAAAATGCA	57.710	39.130	0.00	0.00	0.00	3.96
467	468	6.299141	ACTCATATCGGGTAGAAAATGCATT	58.701	36.000	5.99	5.99	0.00	3.56
468	469	6.205464	ACTCATATCGGGTAGAAAATGCATTG	59.795	38.462	13.82	0.00	0.00	2.82
469	470	5.473162	TCATATCGGGTAGAAAATGCATTGG	59.527	40.000	13.82	0.00	0.00	3.16
470	471	3.358111	TCGGGTAGAAAATGCATTGGA	57.642	42.857	13.82	0.00	0.00	3.53
471	472	3.278574	TCGGGTAGAAAATGCATTGGAG	58.721	45.455	13.82	0.00	0.00	3.86
472	473	2.358898	CGGGTAGAAAATGCATTGGAGG	59.641	50.000	13.82	0.00	0.00	4.30
473	474	3.631250	GGGTAGAAAATGCATTGGAGGA	58.369	45.455	13.82	0.00	0.00	3.71
474	475	4.218312	GGGTAGAAAATGCATTGGAGGAT	58.782	43.478	13.82	0.00	0.00	3.24
570	585	0.765510	AGGATCCAAATCGGGTAGCC	59.234	55.000	15.82	0.00	34.36	3.93
641	815	1.031571	TGTGCAATCCCTTCGATGCC	61.032	55.000	4.13	0.00	0.00	4.40
742	970	7.945134	ACACAAAGAAAATAAGAGCATTGACT	58.055	30.769	0.00	0.00	0.00	3.41
747	975	7.763172	AGAAAATAAGAGCATTGACTCTACG	57.237	36.000	9.90	0.00	46.38	3.51
811	1871	1.301401	CAAACTGAAGACGCCGGGA	60.301	57.895	2.18	0.00	0.00	5.14
934	2063	4.820744	GGCCATCCACCACCGCAT	62.821	66.667	0.00	0.00	0.00	4.73
1145	2307	4.778415	CCGCGTCGACCTGGACAG	62.778	72.222	14.03	0.00	36.73	3.51
1149	2311	1.079819	CGTCGACCTGGACAGCAAT	60.080	57.895	10.58	0.00	36.73	3.56
1427	2589	1.640604	CGGCGAGGTACTACGAGTC	59.359	63.158	0.00	4.48	41.55	3.36
1431	2593	1.202121	GCGAGGTACTACGAGTCCAAC	60.202	57.143	14.12	0.00	41.55	3.77
1432	2594	1.399791	CGAGGTACTACGAGTCCAACC	59.600	57.143	6.43	0.00	41.55	3.77
1433	2595	1.747924	GAGGTACTACGAGTCCAACCC	59.252	57.143	0.00	0.00	41.55	4.11
1434	2596	1.357079	AGGTACTACGAGTCCAACCCT	59.643	52.381	0.00	0.00	36.02	4.34
1435	2597	1.475682	GGTACTACGAGTCCAACCCTG	59.524	57.143	0.00	0.00	0.00	4.45
1436	2598	1.475682	GTACTACGAGTCCAACCCTGG	59.524	57.143	0.00	0.00	45.08	4.45
1437	2599	1.218316	CTACGAGTCCAACCCTGGC	59.782	63.158	0.00	0.00	43.17	4.85
1438	2600	2.558554	CTACGAGTCCAACCCTGGCG	62.559	65.000	0.00	0.00	43.17	5.69
1572	2785	4.840005	GCGGCACCTGGAGGCTAC	62.840	72.222	15.15	4.27	39.32	3.58
1573	2786	4.514577	CGGCACCTGGAGGCTACG	62.515	72.222	15.15	7.52	39.32	3.51
1574	2787	4.162690	GGCACCTGGAGGCTACGG	62.163	72.222	10.39	0.00	39.32	4.02
1575	2788	4.840005	GCACCTGGAGGCTACGGC	62.840	72.222	0.00	0.00	39.32	5.68
1576	2789	4.514577	CACCTGGAGGCTACGGCG	62.515	72.222	4.80	4.80	39.32	6.46
1581	2794	4.919987	GGAGGCTACGGCGCGTAC	62.920	72.222	6.90	0.00	41.54	3.67
1631	2847	4.529219	CTATGCCTCCACCGCGCA	62.529	66.667	8.75	0.00	36.84	6.09
1713	2992	2.429058	CAGGGAGCAGGCGCATAT	59.571	61.111	10.83	0.00	42.27	1.78
2190	3602	3.732048	ATCTCCATCCATGCATGCATA	57.268	42.857	31.73	18.79	34.91	3.14
2232	3644	7.521423	CGGGTTGAATGAATTTGTTCTTGTCTA	60.521	37.037	5.66	0.00	0.00	2.59
2235	3647	9.173939	GTTGAATGAATTTGTTCTTGTCTACAG	57.826	33.333	5.66	0.00	0.00	2.74
2275	3687	1.109323	GGCAGCTTCCACCACAAGTT	61.109	55.000	0.00	0.00	0.00	2.66
2277	3689	1.269257	GCAGCTTCCACCACAAGTTTC	60.269	52.381	0.00	0.00	0.00	2.78
2287	3699	4.173256	CACCACAAGTTTCTGGTTTGTTC	58.827	43.478	0.00	0.00	38.84	3.18
2296	3711	4.625972	TTCTGGTTTGTTCGTTTCTTCC	57.374	40.909	0.00	0.00	0.00	3.46
2347	3762	0.954449	GACGACCGAGGAGAGTGACA	60.954	60.000	0.00	0.00	0.00	3.58
2349	3764	1.235281	CGACCGAGGAGAGTGACACA	61.235	60.000	8.59	0.00	0.00	3.72
2352	3767	0.387367	CCGAGGAGAGTGACACAACG	60.387	60.000	8.59	4.14	0.00	4.10
2401	3816	5.524646	CGTGCCTCCTTACGGAATTATTTTA	59.475	40.000	0.00	0.00	39.29	1.52
2405	3820	6.647895	GCCTCCTTACGGAATTATTTTATCGA	59.352	38.462	0.00	0.00	39.29	3.59
2479	3894	5.419542	CGACAAATATTTCTGGACTGAGGA	58.580	41.667	0.00	0.00	0.00	3.71
2488	3903	4.655762	TCTGGACTGAGGAAATATGTCG	57.344	45.455	0.00	0.00	0.00	4.35
2490	3905	4.466370	TCTGGACTGAGGAAATATGTCGTT	59.534	41.667	0.00	0.00	0.00	3.85
2632	4048	7.092716	ACAAATATGAGCCTTTCACAAACATC	58.907	34.615	0.00	0.00	38.99	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	9.137459	TCACAAATAAGATTACTCTCCCTCTAG	57.863	37.037	0.00	0.00	0.00	2.43
49	50	6.697892	CGTCACAAATAAGATTACTCTCCCTC	59.302	42.308	0.00	0.00	0.00	4.30
129	130	1.199097	GTGACGGGCGAATGAAAACAT	59.801	47.619	0.00	0.00	0.00	2.71
225	226	8.320295	GCGTTGTACAAAAATCATTAATCCATG	58.680	33.333	10.51	0.00	0.00	3.66
321	322	5.878116	TCACTACTAAGGCAACGCAAATATT	59.122	36.000	0.00	0.00	46.39	1.28
323	324	4.823157	TCACTACTAAGGCAACGCAAATA	58.177	39.130	0.00	0.00	46.39	1.40
329	330	2.683968	TGCTTCACTACTAAGGCAACG	58.316	47.619	0.00	0.00	46.39	4.10
403	404	0.179156	GTGTTGCTCAATGATGCCCG	60.179	55.000	3.08	0.00	0.00	6.13
412	413	2.159448	CGTCTTTGTTGGTGTTGCTCAA	60.159	45.455	0.00	0.00	0.00	3.02
421	422	3.536956	TCTCTTCACGTCTTTGTTGGT	57.463	42.857	0.00	0.00	0.00	3.67
447	448	5.630121	TCCAATGCATTTTCTACCCGATAT	58.370	37.500	9.83	0.00	0.00	1.63
448	449	5.042463	TCCAATGCATTTTCTACCCGATA	57.958	39.130	9.83	0.00	0.00	2.92
450	451	3.278574	CTCCAATGCATTTTCTACCCGA	58.721	45.455	9.83	0.00	0.00	5.14
452	453	3.631250	TCCTCCAATGCATTTTCTACCC	58.369	45.455	9.83	0.00	0.00	3.69
453	454	7.530426	AATATCCTCCAATGCATTTTCTACC	57.470	36.000	9.83	0.00	0.00	3.18
456	457	9.289782	GTACTAATATCCTCCAATGCATTTTCT	57.710	33.333	9.83	0.00	0.00	2.52
570	585	6.939132	ATTAAGGAGCAGAATGAATGAGTG	57.061	37.500	0.00	0.00	39.69	3.51
718	946	8.295288	AGAGTCAATGCTCTTATTTTCTTTGTG	58.705	33.333	2.21	0.00	42.69	3.33
734	962	1.221414	GATGCCCGTAGAGTCAATGC	58.779	55.000	0.00	0.00	0.00	3.56
747	975	0.393808	TTTTCTAGGTGCGGATGCCC	60.394	55.000	0.00	0.00	41.78	5.36
789	1849	1.674817	CCGGCGTCTTCAGTTTGGTAT	60.675	52.381	6.01	0.00	0.00	2.73
790	1850	0.320073	CCGGCGTCTTCAGTTTGGTA	60.320	55.000	6.01	0.00	0.00	3.25
798	1858	3.998672	GTGGTCCCGGCGTCTTCA	61.999	66.667	6.01	0.00	0.00	3.02
799	1859	2.726822	AAAGTGGTCCCGGCGTCTTC	62.727	60.000	6.01	0.00	0.00	2.87
811	1871	2.705658	TCATGTCTGACTGGAAAGTGGT	59.294	45.455	9.51	0.00	0.00	4.16
918	2025	3.211963	GATGCGGTGGTGGATGGC	61.212	66.667	0.00	0.00	0.00	4.40
932	2061	1.068434	GTGTTTGGTTGTGGTGGGATG	59.932	52.381	0.00	0.00	0.00	3.51
934	2063	0.039764	TGTGTTTGGTTGTGGTGGGA	59.960	50.000	0.00	0.00	0.00	4.37
982	2142	0.984961	ATCTTGCTAGGCTGGGCTGA	60.985	55.000	13.70	11.92	0.00	4.26
1145	2307	2.044946	AGGCGGGGTTCTCATTGC	60.045	61.111	0.00	0.00	0.00	3.56
1167	2329	3.677527	GGGACGACGACCTTCTCA	58.322	61.111	15.72	0.00	0.00	3.27
1564	2777	4.919987	GTACGCGCCGTAGCCTCC	62.920	72.222	5.73	0.00	43.06	4.30
1710	2989	1.190833	CCGGAGCAGAGGAGCCATAT	61.191	60.000	0.00	0.00	34.23	1.78
2076	3481	4.241681	CTCTCTTCTTTTCAACTCTCCGG	58.758	47.826	0.00	0.00	0.00	5.14
2077	3482	4.241681	CCTCTCTTCTTTTCAACTCTCCG	58.758	47.826	0.00	0.00	0.00	4.63
2079	3484	8.840833	AATAACCTCTCTTCTTTTCAACTCTC	57.159	34.615	0.00	0.00	0.00	3.20
2080	3485	9.634021	AAAATAACCTCTCTTCTTTTCAACTCT	57.366	29.630	0.00	0.00	0.00	3.24
2088	3493	7.503902	AGCACAAGAAAATAACCTCTCTTCTTT	59.496	33.333	0.00	0.00	34.84	2.52
2167	3575	3.834938	TGCATGCATGGATGGAGATTAA	58.165	40.909	27.34	0.00	0.00	1.40
2190	3602	1.839994	ACCCGATTCTCATCCACATGT	59.160	47.619	0.00	0.00	0.00	3.21
2249	3661	2.497273	GTGGTGGAAGCTGCCATTTATT	59.503	45.455	19.04	0.00	40.68	1.40
2250	3662	2.102578	GTGGTGGAAGCTGCCATTTAT	58.897	47.619	19.04	0.00	40.68	1.40
2251	3663	1.202989	TGTGGTGGAAGCTGCCATTTA	60.203	47.619	19.04	3.30	40.68	1.40
2252	3664	0.469705	TGTGGTGGAAGCTGCCATTT	60.470	50.000	19.04	0.00	40.68	2.32
2259	3671	2.301346	CAGAAACTTGTGGTGGAAGCT	58.699	47.619	0.00	0.00	33.76	3.74
2275	3687	4.266714	AGGAAGAAACGAACAAACCAGAA	58.733	39.130	0.00	0.00	0.00	3.02
2277	3689	4.351192	CAAGGAAGAAACGAACAAACCAG	58.649	43.478	0.00	0.00	0.00	4.00
2287	3699	0.941542	TGGAACGCAAGGAAGAAACG	59.058	50.000	0.00	0.00	46.39	3.60
2296	3711	0.523072	CCATGGAAGTGGAACGCAAG	59.477	55.000	5.56	0.00	45.86	4.01
2347	3762	4.138487	AGAAAAAGTCTCACCTCGTTGT	57.862	40.909	0.00	0.00	0.00	3.32
2349	3764	5.163332	ACCTAAGAAAAAGTCTCACCTCGTT	60.163	40.000	0.00	0.00	34.56	3.85
2352	3767	5.697178	GTCACCTAAGAAAAAGTCTCACCTC	59.303	44.000	0.00	0.00	34.56	3.85
2444	3859	9.056005	CAGAAATATTTGTCGGAGAAATGGATA	57.944	33.333	19.84	3.83	39.69	2.59
2455	3870	4.572389	CCTCAGTCCAGAAATATTTGTCGG	59.428	45.833	5.17	6.47	0.00	4.79
2479	3894	7.604927	TCTGCTAGTTGGTTTAACGACATATTT	59.395	33.333	0.00	0.00	44.15	1.40
2488	3903	3.188667	GCCACTCTGCTAGTTGGTTTAAC	59.811	47.826	0.00	0.00	35.76	2.01
2490	3905	2.290071	GGCCACTCTGCTAGTTGGTTTA	60.290	50.000	0.00	0.00	35.76	2.01
2952	4375	6.591834	AGAGAGGAAACAACAATATGAAGACG	59.408	38.462	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.