Multiple sequence alignment - TraesCS7D01G509400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G509400 chr7D 100.000 6590 0 0 1 6590 612899614 612893025 0.000000e+00 12170.0
1 TraesCS7D01G509400 chr7D 100.000 28 0 0 5752 5779 612893815 612893788 1.200000e-02 52.8
2 TraesCS7D01G509400 chr7D 100.000 28 0 0 5800 5827 612893863 612893836 1.200000e-02 52.8
3 TraesCS7D01G509400 chr7A 95.657 944 18 7 1913 2839 704279683 704278746 0.000000e+00 1495.0
4 TraesCS7D01G509400 chr7A 91.136 722 27 13 901 1613 704281380 704280687 0.000000e+00 944.0
5 TraesCS7D01G509400 chr7A 94.523 566 24 6 5219 5779 704276065 704275502 0.000000e+00 867.0
6 TraesCS7D01G509400 chr7A 94.424 556 23 4 1 551 704281944 704281392 0.000000e+00 848.0
7 TraesCS7D01G509400 chr7A 90.259 657 24 7 5953 6590 704275232 704274597 0.000000e+00 822.0
8 TraesCS7D01G509400 chr7A 93.361 482 22 5 3066 3545 704278439 704277966 0.000000e+00 704.0
9 TraesCS7D01G509400 chr7A 84.573 726 65 17 4387 5104 704277929 704277243 0.000000e+00 676.0
10 TraesCS7D01G509400 chr7A 90.129 233 21 2 2239 2469 704278660 704278428 1.070000e-77 302.0
11 TraesCS7D01G509400 chr7A 97.403 154 4 0 5800 5953 704275529 704275376 5.070000e-66 263.0
12 TraesCS7D01G509400 chr7A 84.906 212 18 9 1631 1841 704280598 704280400 1.120000e-47 202.0
13 TraesCS7D01G509400 chr7A 96.809 94 3 0 2911 3004 704278750 704278657 2.460000e-34 158.0
14 TraesCS7D01G509400 chr7A 100.000 35 0 0 3571 3605 704277964 704277930 1.530000e-06 65.8
15 TraesCS7D01G509400 chr7B 85.995 1321 87 27 2310 3604 702330163 702328915 0.000000e+00 1325.0
16 TraesCS7D01G509400 chr7B 89.809 785 32 17 845 1613 702333449 702332697 0.000000e+00 963.0
17 TraesCS7D01G509400 chr7B 92.160 676 35 9 5226 5895 702325500 702324837 0.000000e+00 939.0
18 TraesCS7D01G509400 chr7B 93.945 512 29 2 4373 4883 702429728 702429218 0.000000e+00 773.0
19 TraesCS7D01G509400 chr7B 82.662 819 50 34 5219 5967 702428850 702428054 5.570000e-180 641.0
20 TraesCS7D01G509400 chr7B 86.972 545 39 20 6046 6590 702324646 702324134 9.520000e-163 584.0
21 TraesCS7D01G509400 chr7B 92.346 405 22 6 3206 3609 702430111 702429715 9.590000e-158 568.0
22 TraesCS7D01G509400 chr7B 81.232 682 76 27 3740 4381 184489402 184488733 2.740000e-138 503.0
23 TraesCS7D01G509400 chr7B 84.570 512 51 7 4384 4879 702328916 702328417 3.570000e-132 483.0
24 TraesCS7D01G509400 chr7B 86.788 386 26 9 6168 6548 702391001 702390636 2.210000e-109 407.0
25 TraesCS7D01G509400 chr7B 88.854 314 12 7 3663 3976 452494012 452493722 1.350000e-96 364.0
26 TraesCS7D01G509400 chr7B 94.444 234 13 0 3929 4162 452493721 452493488 1.750000e-95 361.0
27 TraesCS7D01G509400 chr7B 86.081 273 23 8 1634 1906 702332617 702332360 5.030000e-71 279.0
28 TraesCS7D01G509400 chr7B 86.498 237 15 3 4944 5180 702429218 702428999 1.840000e-60 244.0
29 TraesCS7D01G509400 chr7B 80.556 288 29 20 4109 4373 678569266 678568983 5.210000e-46 196.0
30 TraesCS7D01G509400 chr7B 80.992 121 14 7 5929 6040 702324844 702324724 3.270000e-13 87.9
31 TraesCS7D01G509400 chr7B 100.000 28 0 0 5752 5779 702324932 702324905 1.200000e-02 52.8
32 TraesCS7D01G509400 chr7B 94.286 35 1 1 5800 5833 702324980 702324946 1.200000e-02 52.8
33 TraesCS7D01G509400 chr5D 88.257 809 61 25 2800 3601 257508268 257509049 0.000000e+00 937.0
34 TraesCS7D01G509400 chr5D 86.592 716 67 18 2081 2794 257506678 257507366 0.000000e+00 763.0
35 TraesCS7D01G509400 chr5D 89.825 570 43 12 865 1426 257500047 257500609 0.000000e+00 717.0
36 TraesCS7D01G509400 chr5D 87.500 328 40 1 5291 5618 257510424 257510750 1.730000e-100 377.0
37 TraesCS7D01G509400 chr5D 88.591 149 17 0 1761 1909 257500968 257501116 1.460000e-41 182.0
38 TraesCS7D01G509400 chr5D 88.462 130 14 1 4382 4511 257509049 257509177 8.850000e-34 156.0
39 TraesCS7D01G509400 chr5D 78.607 201 18 13 1422 1613 257500650 257500834 6.990000e-20 110.0
40 TraesCS7D01G509400 chr5B 89.130 736 43 14 3641 4373 696096519 696097220 0.000000e+00 881.0
41 TraesCS7D01G509400 chr5B 88.737 657 29 13 3639 4288 678867547 678866929 0.000000e+00 761.0
42 TraesCS7D01G509400 chr5B 87.424 660 45 20 2800 3453 291789599 291790226 0.000000e+00 725.0
43 TraesCS7D01G509400 chr5B 89.510 572 40 16 865 1426 291784773 291785334 0.000000e+00 706.0
44 TraesCS7D01G509400 chr5B 84.651 645 53 26 2081 2718 291787886 291788491 9.460000e-168 601.0
45 TraesCS7D01G509400 chr5B 89.968 309 20 5 3689 3996 354231417 354231119 8.010000e-104 388.0
46 TraesCS7D01G509400 chr5B 87.246 345 30 5 4728 5069 291791280 291791613 1.340000e-101 381.0
47 TraesCS7D01G509400 chr5B 79.944 354 41 20 4047 4373 354230073 354229723 3.970000e-57 233.0
48 TraesCS7D01G509400 chr5B 80.952 252 33 9 2382 2628 291787888 291788129 1.130000e-42 185.0
49 TraesCS7D01G509400 chr5B 86.713 143 19 0 1761 1903 291785694 291785836 6.840000e-35 159.0
50 TraesCS7D01G509400 chr5B 91.209 91 7 1 4284 4373 678866769 678866679 8.970000e-24 122.0
51 TraesCS7D01G509400 chr5B 94.444 72 4 0 4728 4799 291791167 291791238 1.940000e-20 111.0
52 TraesCS7D01G509400 chr5B 90.196 51 2 3 2745 2794 291788478 291788526 5.520000e-06 63.9
53 TraesCS7D01G509400 chr5A 89.346 657 43 18 2876 3519 342234197 342234839 0.000000e+00 800.0
54 TraesCS7D01G509400 chr5A 89.510 572 40 17 865 1426 342229039 342229600 0.000000e+00 706.0
55 TraesCS7D01G509400 chr5A 84.314 714 61 23 2081 2792 342232244 342232908 0.000000e+00 651.0
56 TraesCS7D01G509400 chr5A 88.986 345 34 4 4730 5073 342235894 342236235 2.200000e-114 424.0
57 TraesCS7D01G509400 chr5A 87.195 328 41 1 5291 5618 342237551 342237877 8.070000e-99 372.0
58 TraesCS7D01G509400 chr5A 81.673 251 30 9 2382 2628 342232246 342232484 1.870000e-45 195.0
59 TraesCS7D01G509400 chr5A 77.778 198 24 11 1422 1613 342229641 342229824 3.250000e-18 104.0
60 TraesCS7D01G509400 chr3A 94.323 458 19 7 3639 4093 691468808 691468355 0.000000e+00 695.0
61 TraesCS7D01G509400 chr3A 92.281 285 19 3 4091 4373 691461758 691461475 1.030000e-107 401.0
62 TraesCS7D01G509400 chr2B 84.100 717 72 20 3689 4372 200861026 200860319 0.000000e+00 654.0
63 TraesCS7D01G509400 chr1B 89.059 457 37 9 3929 4375 8714880 8715333 7.470000e-154 555.0
64 TraesCS7D01G509400 chr1B 89.604 202 4 4 3772 3973 8714692 8714876 2.370000e-59 241.0
65 TraesCS7D01G509400 chr1B 100.000 32 0 0 3663 3694 8714619 8714650 7.140000e-05 60.2
66 TraesCS7D01G509400 chr2A 80.423 710 66 33 3689 4359 766979055 766978380 2.150000e-129 473.0
67 TraesCS7D01G509400 chr2D 87.366 372 37 5 3689 4056 87415977 87416342 1.020000e-112 418.0
68 TraesCS7D01G509400 chr2D 79.200 125 23 3 593 714 524021496 524021620 4.230000e-12 84.2
69 TraesCS7D01G509400 chr6A 81.091 275 34 12 4107 4373 24053987 24053723 3.120000e-48 204.0
70 TraesCS7D01G509400 chr3B 92.742 124 8 1 315 438 800630240 800630362 1.890000e-40 178.0
71 TraesCS7D01G509400 chr4A 75.931 403 46 27 4000 4373 685755626 685756006 6.840000e-35 159.0
72 TraesCS7D01G509400 chrUn 74.627 402 49 29 4003 4373 297327525 297327146 1.930000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G509400 chr7D 612893025 612899614 6589 True 12170.000000 12170 100.000000 1 6590 1 chr7D.!!$R1 6589
1 TraesCS7D01G509400 chr7A 704274597 704281944 7347 True 612.233333 1495 92.765000 1 6590 12 chr7A.!!$R1 6589
2 TraesCS7D01G509400 chr7B 702428054 702430111 2057 True 556.500000 773 88.862750 3206 5967 4 chr7B.!!$R6 2761
3 TraesCS7D01G509400 chr7B 702324134 702333449 9315 True 529.611111 1325 88.985000 845 6590 9 chr7B.!!$R5 5745
4 TraesCS7D01G509400 chr7B 184488733 184489402 669 True 503.000000 503 81.232000 3740 4381 1 chr7B.!!$R1 641
5 TraesCS7D01G509400 chr7B 452493488 452494012 524 True 362.500000 364 91.649000 3663 4162 2 chr7B.!!$R4 499
6 TraesCS7D01G509400 chr5D 257506678 257510750 4072 False 558.250000 937 87.702750 2081 5618 4 chr5D.!!$F2 3537
7 TraesCS7D01G509400 chr5D 257500047 257501116 1069 False 336.333333 717 85.674333 865 1909 3 chr5D.!!$F1 1044
8 TraesCS7D01G509400 chr5B 696096519 696097220 701 False 881.000000 881 89.130000 3641 4373 1 chr5B.!!$F1 732
9 TraesCS7D01G509400 chr5B 678866679 678867547 868 True 441.500000 761 89.973000 3639 4373 2 chr5B.!!$R2 734
10 TraesCS7D01G509400 chr5B 291784773 291791613 6840 False 366.487500 725 87.642000 865 5069 8 chr5B.!!$F2 4204
11 TraesCS7D01G509400 chr5B 354229723 354231417 1694 True 310.500000 388 84.956000 3689 4373 2 chr5B.!!$R1 684
12 TraesCS7D01G509400 chr5A 342229039 342237877 8838 False 464.571429 800 85.543143 865 5618 7 chr5A.!!$F1 4753
13 TraesCS7D01G509400 chr2B 200860319 200861026 707 True 654.000000 654 84.100000 3689 4372 1 chr2B.!!$R1 683
14 TraesCS7D01G509400 chr1B 8714619 8715333 714 False 285.400000 555 92.887667 3663 4375 3 chr1B.!!$F1 712
15 TraesCS7D01G509400 chr2A 766978380 766979055 675 True 473.000000 473 80.423000 3689 4359 1 chr2A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 839 0.038343 GCATCAAGCGAAAGGGCAAA 60.038 50.0 0.00 0.0 34.64 3.68 F
1475 1541 0.040336 GATCGCGCTCTCCATTACGA 60.040 55.0 5.56 0.0 0.00 3.43 F
1477 1543 0.384309 TCGCGCTCTCCATTACGATT 59.616 50.0 5.56 0.0 0.00 3.34 F
1867 2030 0.925558 TTGCCCATGCCCTCATTCTA 59.074 50.0 0.00 0.0 36.33 2.10 F
3204 8552 0.458716 GTGGGCAAGAGCTACGTCTC 60.459 60.0 0.00 0.0 41.70 3.36 F
4367 11289 1.164411 CGTGCATGGTAGAAAAGCCA 58.836 50.0 0.00 0.0 39.33 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1918 1.480789 TGCCGAGCATGAGGTACTTA 58.519 50.000 0.00 0.0 32.56 2.24 R
3031 8216 1.066358 TGCACAGAAGATGCCTCTGAG 60.066 52.381 6.83 0.0 42.69 3.35 R
3033 8218 2.039818 ATGCACAGAAGATGCCTCTG 57.960 50.000 0.00 0.0 42.69 3.35 R
3513 8873 1.692148 CGCACACACACGAACACACT 61.692 55.000 0.00 0.0 0.00 3.55 R
4526 11579 0.321298 ACACATGCACCCCTTACGAC 60.321 55.000 0.00 0.0 0.00 4.34 R
5785 17483 0.035056 CCCTGCCTACTTGGTTGGAG 60.035 60.000 2.63 0.0 38.35 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.200716 GTGACACCATCAGCAACATGG 59.799 52.381 0.00 6.97 45.74 3.66
30 31 3.228188 TCAGCAACATGGAGGTTTTCT 57.772 42.857 0.00 0.00 0.00 2.52
33 34 2.629617 AGCAACATGGAGGTTTTCTTGG 59.370 45.455 0.00 0.00 0.00 3.61
40 41 6.256053 ACATGGAGGTTTTCTTGGAATATGT 58.744 36.000 0.00 0.00 0.00 2.29
50 51 8.548721 GTTTTCTTGGAATATGTATACCACGAG 58.451 37.037 0.00 0.00 33.54 4.18
193 199 0.609957 TCAAGCCATGGGAGCAACAG 60.610 55.000 15.13 0.00 0.00 3.16
198 204 0.249120 CCATGGGAGCAACAGTACGA 59.751 55.000 2.85 0.00 0.00 3.43
238 244 1.900351 TCCAGTGGGAGATCGCTTG 59.100 57.895 9.92 0.00 38.64 4.01
240 246 1.599047 CAGTGGGAGATCGCTTGGT 59.401 57.895 0.00 0.00 0.00 3.67
244 250 1.468914 GTGGGAGATCGCTTGGTTTTC 59.531 52.381 0.00 0.00 0.00 2.29
371 377 1.900486 ACTGTCCTTAGTACCCAGTGC 59.100 52.381 0.00 0.00 35.20 4.40
410 416 1.741327 ATGGGCTTGGCGATCAATGC 61.741 55.000 0.00 0.00 34.45 3.56
439 445 3.516615 GTTTCCTCTCGAAGATCACCAG 58.483 50.000 0.00 0.00 33.89 4.00
453 459 1.227556 ACCAGTGCACTCGTGAACC 60.228 57.895 18.64 0.00 40.04 3.62
456 462 3.712881 GTGCACTCGTGAACCGGC 61.713 66.667 10.32 0.00 32.90 6.13
468 474 1.314730 GAACCGGCTTTTCTTGGTCA 58.685 50.000 0.00 0.00 32.37 4.02
478 484 1.538047 TTCTTGGTCATGCTGCTTCC 58.462 50.000 0.00 0.00 0.00 3.46
491 497 0.909610 TGCTTCCTTGGGATCCGAGT 60.910 55.000 5.45 0.00 33.27 4.18
518 524 5.648178 TCTTAACTGTTACCAGCGATGTA 57.352 39.130 0.00 0.00 42.81 2.29
533 539 3.735820 GCGATGTATGGGTACTGAAACGA 60.736 47.826 0.00 0.00 0.00 3.85
543 549 4.562143 GGGTACTGAAACGACTTACACCAT 60.562 45.833 0.00 0.00 0.00 3.55
544 550 4.387862 GGTACTGAAACGACTTACACCATG 59.612 45.833 0.00 0.00 0.00 3.66
545 551 4.067972 ACTGAAACGACTTACACCATGT 57.932 40.909 0.00 0.00 0.00 3.21
546 552 4.448210 ACTGAAACGACTTACACCATGTT 58.552 39.130 0.00 0.00 0.00 2.71
547 553 4.272504 ACTGAAACGACTTACACCATGTTG 59.727 41.667 0.00 0.00 0.00 3.33
548 554 4.443621 TGAAACGACTTACACCATGTTGA 58.556 39.130 0.00 0.00 0.00 3.18
549 555 4.271533 TGAAACGACTTACACCATGTTGAC 59.728 41.667 0.00 0.00 0.00 3.18
550 556 2.762745 ACGACTTACACCATGTTGACC 58.237 47.619 0.00 0.00 0.00 4.02
551 557 2.367567 ACGACTTACACCATGTTGACCT 59.632 45.455 0.00 0.00 0.00 3.85
552 558 2.993899 CGACTTACACCATGTTGACCTC 59.006 50.000 0.00 0.00 0.00 3.85
557 563 2.517959 ACACCATGTTGACCTCATTGG 58.482 47.619 0.00 0.00 42.93 3.16
570 576 2.301296 CCTCATTGGCCATCTAGATCGT 59.699 50.000 6.09 0.00 0.00 3.73
571 577 3.583806 CTCATTGGCCATCTAGATCGTC 58.416 50.000 6.09 0.00 0.00 4.20
572 578 3.234353 TCATTGGCCATCTAGATCGTCT 58.766 45.455 6.09 0.00 0.00 4.18
573 579 3.643320 TCATTGGCCATCTAGATCGTCTT 59.357 43.478 6.09 0.00 0.00 3.01
574 580 4.832823 TCATTGGCCATCTAGATCGTCTTA 59.167 41.667 6.09 0.00 0.00 2.10
575 581 4.585955 TTGGCCATCTAGATCGTCTTAC 57.414 45.455 6.09 0.00 0.00 2.34
576 582 2.552743 TGGCCATCTAGATCGTCTTACG 59.447 50.000 0.00 0.00 44.19 3.18
577 583 2.095161 GGCCATCTAGATCGTCTTACGG 60.095 54.545 1.03 0.00 42.81 4.02
578 584 2.812591 GCCATCTAGATCGTCTTACGGA 59.187 50.000 1.03 0.00 42.81 4.69
579 585 3.120130 GCCATCTAGATCGTCTTACGGAG 60.120 52.174 1.03 0.00 42.81 4.63
580 586 4.316645 CCATCTAGATCGTCTTACGGAGA 58.683 47.826 1.03 0.00 42.81 3.71
581 587 4.390603 CCATCTAGATCGTCTTACGGAGAG 59.609 50.000 1.03 0.00 42.81 3.20
582 588 4.933505 TCTAGATCGTCTTACGGAGAGA 57.066 45.455 0.00 0.00 42.81 3.10
583 589 4.873817 TCTAGATCGTCTTACGGAGAGAG 58.126 47.826 0.00 0.00 42.81 3.20
584 590 3.823281 AGATCGTCTTACGGAGAGAGA 57.177 47.619 0.00 0.00 42.81 3.10
585 591 3.724374 AGATCGTCTTACGGAGAGAGAG 58.276 50.000 0.00 0.00 42.81 3.20
586 592 3.385433 AGATCGTCTTACGGAGAGAGAGA 59.615 47.826 0.00 0.00 42.81 3.10
587 593 2.891112 TCGTCTTACGGAGAGAGAGAC 58.109 52.381 0.00 0.00 42.81 3.36
588 594 1.935199 CGTCTTACGGAGAGAGAGACC 59.065 57.143 0.00 0.00 38.08 3.85
589 595 2.677325 CGTCTTACGGAGAGAGAGACCA 60.677 54.545 0.00 0.00 38.08 4.02
590 596 2.940410 GTCTTACGGAGAGAGAGACCAG 59.060 54.545 0.00 0.00 34.31 4.00
591 597 1.673920 CTTACGGAGAGAGAGACCAGC 59.326 57.143 0.00 0.00 0.00 4.85
592 598 0.618981 TACGGAGAGAGAGACCAGCA 59.381 55.000 0.00 0.00 0.00 4.41
593 599 0.963355 ACGGAGAGAGAGACCAGCAC 60.963 60.000 0.00 0.00 0.00 4.40
594 600 1.806568 GGAGAGAGAGACCAGCACG 59.193 63.158 0.00 0.00 0.00 5.34
595 601 1.138671 GAGAGAGAGACCAGCACGC 59.861 63.158 0.00 0.00 0.00 5.34
596 602 1.304052 AGAGAGAGACCAGCACGCT 60.304 57.895 0.00 0.00 0.00 5.07
597 603 1.138671 GAGAGAGACCAGCACGCTC 59.861 63.158 0.00 0.00 35.14 5.03
598 604 1.590610 GAGAGAGACCAGCACGCTCA 61.591 60.000 0.00 0.00 36.83 4.26
599 605 1.181741 AGAGAGACCAGCACGCTCAA 61.182 55.000 0.00 0.00 36.83 3.02
600 606 0.319900 GAGAGACCAGCACGCTCAAA 60.320 55.000 0.00 0.00 35.06 2.69
601 607 0.320247 AGAGACCAGCACGCTCAAAG 60.320 55.000 0.00 0.00 0.00 2.77
602 608 1.905922 GAGACCAGCACGCTCAAAGC 61.906 60.000 0.00 0.00 38.02 3.51
611 617 3.793144 GCTCAAAGCGCCGACCTG 61.793 66.667 2.29 0.00 0.00 4.00
612 618 2.048222 CTCAAAGCGCCGACCTGA 60.048 61.111 2.29 0.00 0.00 3.86
613 619 2.357034 TCAAAGCGCCGACCTGAC 60.357 61.111 2.29 0.00 0.00 3.51
614 620 2.664851 CAAAGCGCCGACCTGACA 60.665 61.111 2.29 0.00 0.00 3.58
615 621 2.665185 AAAGCGCCGACCTGACAC 60.665 61.111 2.29 0.00 0.00 3.67
616 622 3.454587 AAAGCGCCGACCTGACACA 62.455 57.895 2.29 0.00 0.00 3.72
617 623 3.865929 AAGCGCCGACCTGACACAG 62.866 63.158 2.29 0.00 0.00 3.66
619 625 4.662961 CGCCGACCTGACACAGCA 62.663 66.667 0.00 0.00 0.00 4.41
620 626 2.280797 GCCGACCTGACACAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
621 627 1.891919 GCCGACCTGACACAGCAAA 60.892 57.895 0.00 0.00 0.00 3.68
622 628 1.845809 GCCGACCTGACACAGCAAAG 61.846 60.000 0.00 0.00 0.00 2.77
623 629 1.230635 CCGACCTGACACAGCAAAGG 61.231 60.000 0.00 0.00 35.82 3.11
624 630 1.845809 CGACCTGACACAGCAAAGGC 61.846 60.000 0.00 0.00 41.61 4.35
674 680 3.478780 CGGGTTGGACCAGGAGAA 58.521 61.111 0.00 0.00 41.02 2.87
675 681 1.758592 CGGGTTGGACCAGGAGAAA 59.241 57.895 0.00 0.00 41.02 2.52
676 682 0.109723 CGGGTTGGACCAGGAGAAAA 59.890 55.000 0.00 0.00 41.02 2.29
677 683 1.271926 CGGGTTGGACCAGGAGAAAAT 60.272 52.381 0.00 0.00 41.02 1.82
678 684 2.447443 GGGTTGGACCAGGAGAAAATC 58.553 52.381 0.00 0.00 41.02 2.17
679 685 2.041755 GGGTTGGACCAGGAGAAAATCT 59.958 50.000 0.00 0.00 41.02 2.40
680 686 3.265995 GGGTTGGACCAGGAGAAAATCTA 59.734 47.826 0.00 0.00 41.02 1.98
681 687 4.518249 GGTTGGACCAGGAGAAAATCTAG 58.482 47.826 0.00 0.00 38.42 2.43
682 688 4.019231 GGTTGGACCAGGAGAAAATCTAGT 60.019 45.833 0.00 0.00 38.42 2.57
683 689 5.179533 GTTGGACCAGGAGAAAATCTAGTC 58.820 45.833 0.00 0.00 0.00 2.59
684 690 3.447586 TGGACCAGGAGAAAATCTAGTCG 59.552 47.826 0.00 0.00 0.00 4.18
685 691 3.449632 GACCAGGAGAAAATCTAGTCGC 58.550 50.000 0.00 0.00 0.00 5.19
686 692 2.168728 ACCAGGAGAAAATCTAGTCGCC 59.831 50.000 0.00 0.00 34.22 5.54
687 693 2.432510 CCAGGAGAAAATCTAGTCGCCT 59.567 50.000 0.00 0.00 43.94 5.52
688 694 3.810310 AGGAGAAAATCTAGTCGCCTG 57.190 47.619 3.06 0.00 41.84 4.85
689 695 3.366396 AGGAGAAAATCTAGTCGCCTGA 58.634 45.455 3.06 0.00 41.84 3.86
690 696 3.964031 AGGAGAAAATCTAGTCGCCTGAT 59.036 43.478 3.06 0.00 41.84 2.90
691 697 5.141182 AGGAGAAAATCTAGTCGCCTGATA 58.859 41.667 3.06 0.00 41.84 2.15
692 698 5.242838 AGGAGAAAATCTAGTCGCCTGATAG 59.757 44.000 3.06 0.00 41.84 2.08
693 699 5.461032 AGAAAATCTAGTCGCCTGATAGG 57.539 43.478 0.00 0.00 38.80 2.57
694 700 4.896482 AGAAAATCTAGTCGCCTGATAGGT 59.104 41.667 0.00 0.00 37.80 3.08
695 701 4.857509 AAATCTAGTCGCCTGATAGGTC 57.142 45.455 0.00 0.00 37.80 3.85
696 702 1.880271 TCTAGTCGCCTGATAGGTCG 58.120 55.000 0.00 0.00 37.80 4.79
697 703 0.238817 CTAGTCGCCTGATAGGTCGC 59.761 60.000 0.00 0.00 37.80 5.19
698 704 1.170919 TAGTCGCCTGATAGGTCGCC 61.171 60.000 0.00 0.00 37.80 5.54
699 705 2.123854 TCGCCTGATAGGTCGCCT 60.124 61.111 3.87 3.87 37.80 5.52
700 706 2.194212 TCGCCTGATAGGTCGCCTC 61.194 63.158 1.46 0.00 37.80 4.70
701 707 2.490148 CGCCTGATAGGTCGCCTCA 61.490 63.158 1.46 0.00 37.80 3.86
702 708 1.068250 GCCTGATAGGTCGCCTCAC 59.932 63.158 1.46 0.00 37.80 3.51
703 709 1.676678 GCCTGATAGGTCGCCTCACA 61.677 60.000 1.46 3.93 37.80 3.58
704 710 0.387202 CCTGATAGGTCGCCTCACAG 59.613 60.000 16.91 16.91 36.99 3.66
705 711 0.249238 CTGATAGGTCGCCTCACAGC 60.249 60.000 14.06 0.00 34.61 4.40
706 712 0.970427 TGATAGGTCGCCTCACAGCA 60.970 55.000 1.46 0.00 34.61 4.41
707 713 0.249238 GATAGGTCGCCTCACAGCAG 60.249 60.000 1.46 0.00 34.61 4.24
708 714 0.684479 ATAGGTCGCCTCACAGCAGA 60.684 55.000 1.46 0.00 34.61 4.26
709 715 0.898326 TAGGTCGCCTCACAGCAGAA 60.898 55.000 1.46 0.00 34.61 3.02
710 716 1.301716 GGTCGCCTCACAGCAGAAA 60.302 57.895 0.00 0.00 0.00 2.52
711 717 0.884704 GGTCGCCTCACAGCAGAAAA 60.885 55.000 0.00 0.00 0.00 2.29
712 718 0.235926 GTCGCCTCACAGCAGAAAAC 59.764 55.000 0.00 0.00 0.00 2.43
713 719 1.205064 CGCCTCACAGCAGAAAACG 59.795 57.895 0.00 0.00 0.00 3.60
714 720 1.081840 GCCTCACAGCAGAAAACGC 60.082 57.895 0.00 0.00 0.00 4.84
715 721 1.510480 GCCTCACAGCAGAAAACGCT 61.510 55.000 0.00 0.00 41.47 5.07
716 722 0.947244 CCTCACAGCAGAAAACGCTT 59.053 50.000 0.00 0.00 37.72 4.68
717 723 1.069636 CCTCACAGCAGAAAACGCTTC 60.070 52.381 0.00 0.00 37.72 3.86
718 724 0.581529 TCACAGCAGAAAACGCTTCG 59.418 50.000 0.00 0.00 37.72 3.79
719 725 0.993746 CACAGCAGAAAACGCTTCGC 60.994 55.000 0.00 6.58 37.72 4.70
720 726 1.441016 CAGCAGAAAACGCTTCGCC 60.441 57.895 9.42 0.00 37.72 5.54
721 727 2.126850 GCAGAAAACGCTTCGCCC 60.127 61.111 0.00 0.00 0.00 6.13
722 728 2.173382 CAGAAAACGCTTCGCCCG 59.827 61.111 0.00 0.00 0.00 6.13
723 729 3.723348 AGAAAACGCTTCGCCCGC 61.723 61.111 0.00 0.00 0.00 6.13
724 730 4.020378 GAAAACGCTTCGCCCGCA 62.020 61.111 0.00 0.00 0.00 5.69
725 731 3.530398 GAAAACGCTTCGCCCGCAA 62.530 57.895 0.00 0.00 0.00 4.85
726 732 2.992407 GAAAACGCTTCGCCCGCAAA 62.992 55.000 0.00 0.00 0.00 3.68
727 733 2.615262 AAAACGCTTCGCCCGCAAAA 62.615 50.000 0.00 0.00 0.00 2.44
728 734 2.999363 AAACGCTTCGCCCGCAAAAG 62.999 55.000 0.00 0.00 0.00 2.27
729 735 3.722295 CGCTTCGCCCGCAAAAGA 61.722 61.111 3.66 0.00 0.00 2.52
730 736 2.126850 GCTTCGCCCGCAAAAGAC 60.127 61.111 3.66 0.00 0.00 3.01
731 737 2.903547 GCTTCGCCCGCAAAAGACA 61.904 57.895 3.66 0.00 0.00 3.41
732 738 1.082104 CTTCGCCCGCAAAAGACAC 60.082 57.895 0.00 0.00 0.00 3.67
733 739 1.781025 CTTCGCCCGCAAAAGACACA 61.781 55.000 0.00 0.00 0.00 3.72
734 740 1.169661 TTCGCCCGCAAAAGACACAT 61.170 50.000 0.00 0.00 0.00 3.21
735 741 1.169661 TCGCCCGCAAAAGACACATT 61.170 50.000 0.00 0.00 0.00 2.71
736 742 0.729140 CGCCCGCAAAAGACACATTC 60.729 55.000 0.00 0.00 0.00 2.67
737 743 0.388520 GCCCGCAAAAGACACATTCC 60.389 55.000 0.00 0.00 0.00 3.01
738 744 0.109781 CCCGCAAAAGACACATTCCG 60.110 55.000 0.00 0.00 0.00 4.30
739 745 0.729140 CCGCAAAAGACACATTCCGC 60.729 55.000 0.00 0.00 0.00 5.54
740 746 0.040514 CGCAAAAGACACATTCCGCA 60.041 50.000 0.00 0.00 0.00 5.69
741 747 1.599171 CGCAAAAGACACATTCCGCAA 60.599 47.619 0.00 0.00 0.00 4.85
742 748 1.786579 GCAAAAGACACATTCCGCAAC 59.213 47.619 0.00 0.00 0.00 4.17
743 749 2.393764 CAAAAGACACATTCCGCAACC 58.606 47.619 0.00 0.00 0.00 3.77
744 750 1.686355 AAAGACACATTCCGCAACCA 58.314 45.000 0.00 0.00 0.00 3.67
745 751 1.238439 AAGACACATTCCGCAACCAG 58.762 50.000 0.00 0.00 0.00 4.00
746 752 1.210155 GACACATTCCGCAACCAGC 59.790 57.895 0.00 0.00 40.87 4.85
747 753 2.200170 GACACATTCCGCAACCAGCC 62.200 60.000 0.00 0.00 41.38 4.85
748 754 3.055719 ACATTCCGCAACCAGCCG 61.056 61.111 0.00 0.00 41.38 5.52
749 755 4.481112 CATTCCGCAACCAGCCGC 62.481 66.667 0.00 0.00 41.38 6.53
754 760 4.263209 CGCAACCAGCCGCAACAA 62.263 61.111 0.00 0.00 41.38 2.83
755 761 2.105930 GCAACCAGCCGCAACAAA 59.894 55.556 0.00 0.00 37.23 2.83
756 762 1.520342 GCAACCAGCCGCAACAAAA 60.520 52.632 0.00 0.00 37.23 2.44
757 763 0.879839 GCAACCAGCCGCAACAAAAT 60.880 50.000 0.00 0.00 37.23 1.82
758 764 0.860533 CAACCAGCCGCAACAAAATG 59.139 50.000 0.00 0.00 0.00 2.32
759 765 0.249826 AACCAGCCGCAACAAAATGG 60.250 50.000 0.00 0.00 0.00 3.16
760 766 1.112315 ACCAGCCGCAACAAAATGGA 61.112 50.000 0.00 0.00 0.00 3.41
761 767 0.388907 CCAGCCGCAACAAAATGGAG 60.389 55.000 0.00 0.00 0.00 3.86
762 768 1.010419 CAGCCGCAACAAAATGGAGC 61.010 55.000 0.00 0.00 0.00 4.70
763 769 2.088178 GCCGCAACAAAATGGAGCG 61.088 57.895 10.38 10.38 41.87 5.03
764 770 1.285641 CCGCAACAAAATGGAGCGT 59.714 52.632 14.36 0.00 41.07 5.07
765 771 0.318614 CCGCAACAAAATGGAGCGTT 60.319 50.000 14.36 0.00 41.07 4.84
766 772 1.068885 CCGCAACAAAATGGAGCGTTA 60.069 47.619 14.36 0.00 41.07 3.18
767 773 2.241722 CGCAACAAAATGGAGCGTTAG 58.758 47.619 9.50 0.00 39.00 2.34
768 774 2.095969 CGCAACAAAATGGAGCGTTAGA 60.096 45.455 9.50 0.00 39.00 2.10
769 775 3.426159 CGCAACAAAATGGAGCGTTAGAT 60.426 43.478 9.50 0.00 39.00 1.98
770 776 3.853671 GCAACAAAATGGAGCGTTAGATG 59.146 43.478 0.00 0.00 0.00 2.90
771 777 3.764885 ACAAAATGGAGCGTTAGATGC 57.235 42.857 0.00 0.00 0.00 3.91
772 778 2.423538 ACAAAATGGAGCGTTAGATGCC 59.576 45.455 0.00 0.00 0.00 4.40
773 779 2.418368 AAATGGAGCGTTAGATGCCA 57.582 45.000 0.00 0.00 0.00 4.92
774 780 1.668419 AATGGAGCGTTAGATGCCAC 58.332 50.000 0.00 0.00 0.00 5.01
775 781 0.530650 ATGGAGCGTTAGATGCCACG 60.531 55.000 0.00 0.00 39.49 4.94
776 782 1.141019 GGAGCGTTAGATGCCACGA 59.859 57.895 0.00 0.00 38.76 4.35
777 783 0.459585 GGAGCGTTAGATGCCACGAA 60.460 55.000 0.00 0.00 38.76 3.85
778 784 0.924090 GAGCGTTAGATGCCACGAAG 59.076 55.000 0.00 0.00 38.76 3.79
779 785 1.084370 AGCGTTAGATGCCACGAAGC 61.084 55.000 0.00 0.00 38.76 3.86
780 786 2.006772 CGTTAGATGCCACGAAGCC 58.993 57.895 0.00 0.00 38.76 4.35
781 787 0.739462 CGTTAGATGCCACGAAGCCA 60.739 55.000 0.00 0.00 38.76 4.75
782 788 0.727398 GTTAGATGCCACGAAGCCAC 59.273 55.000 0.00 0.00 0.00 5.01
783 789 0.739462 TTAGATGCCACGAAGCCACG 60.739 55.000 0.00 0.00 39.31 4.94
784 790 4.166011 GATGCCACGAAGCCACGC 62.166 66.667 0.00 0.00 36.70 5.34
787 793 3.737172 GCCACGAAGCCACGCATT 61.737 61.111 0.00 0.00 36.70 3.56
788 794 2.953821 CCACGAAGCCACGCATTT 59.046 55.556 0.00 0.00 36.70 2.32
789 795 1.442520 CCACGAAGCCACGCATTTG 60.443 57.895 0.00 0.00 36.70 2.32
790 796 1.573932 CACGAAGCCACGCATTTGA 59.426 52.632 0.00 0.00 36.70 2.69
791 797 0.168788 CACGAAGCCACGCATTTGAT 59.831 50.000 0.00 0.00 36.70 2.57
792 798 0.447801 ACGAAGCCACGCATTTGATC 59.552 50.000 0.00 0.00 36.70 2.92
793 799 0.248215 CGAAGCCACGCATTTGATCC 60.248 55.000 0.00 0.00 0.00 3.36
794 800 0.248215 GAAGCCACGCATTTGATCCG 60.248 55.000 0.00 0.00 0.00 4.18
795 801 1.656818 AAGCCACGCATTTGATCCGG 61.657 55.000 0.00 0.00 0.00 5.14
796 802 2.408835 CCACGCATTTGATCCGGC 59.591 61.111 0.00 0.00 0.00 6.13
797 803 2.405805 CCACGCATTTGATCCGGCA 61.406 57.895 0.00 0.00 0.00 5.69
798 804 1.226379 CACGCATTTGATCCGGCAC 60.226 57.895 0.00 0.00 0.00 5.01
814 820 1.582502 GGCACGAATCTTAACGAGACG 59.417 52.381 0.00 0.00 37.17 4.18
815 821 1.007319 GCACGAATCTTAACGAGACGC 60.007 52.381 0.00 0.00 37.17 5.19
816 822 2.247637 CACGAATCTTAACGAGACGCA 58.752 47.619 0.00 0.00 37.17 5.24
817 823 2.852413 CACGAATCTTAACGAGACGCAT 59.148 45.455 0.00 0.00 37.17 4.73
818 824 3.061797 CACGAATCTTAACGAGACGCATC 60.062 47.826 0.00 0.00 37.17 3.91
819 825 3.105937 CGAATCTTAACGAGACGCATCA 58.894 45.455 0.00 0.00 37.17 3.07
820 826 3.546271 CGAATCTTAACGAGACGCATCAA 59.454 43.478 0.00 0.00 37.17 2.57
821 827 4.316722 CGAATCTTAACGAGACGCATCAAG 60.317 45.833 0.00 0.00 37.17 3.02
822 828 2.259618 TCTTAACGAGACGCATCAAGC 58.740 47.619 0.00 0.00 40.87 4.01
831 837 3.277133 GCATCAAGCGAAAGGGCA 58.723 55.556 0.00 0.00 34.64 5.36
832 838 1.586028 GCATCAAGCGAAAGGGCAA 59.414 52.632 0.00 0.00 34.64 4.52
833 839 0.038343 GCATCAAGCGAAAGGGCAAA 60.038 50.000 0.00 0.00 34.64 3.68
834 840 1.605202 GCATCAAGCGAAAGGGCAAAA 60.605 47.619 0.00 0.00 34.64 2.44
835 841 2.331194 CATCAAGCGAAAGGGCAAAAG 58.669 47.619 0.00 0.00 34.64 2.27
836 842 1.686355 TCAAGCGAAAGGGCAAAAGA 58.314 45.000 0.00 0.00 34.64 2.52
837 843 1.608590 TCAAGCGAAAGGGCAAAAGAG 59.391 47.619 0.00 0.00 34.64 2.85
838 844 1.608590 CAAGCGAAAGGGCAAAAGAGA 59.391 47.619 0.00 0.00 34.64 3.10
839 845 1.528129 AGCGAAAGGGCAAAAGAGAG 58.472 50.000 0.00 0.00 34.64 3.20
840 846 1.072331 AGCGAAAGGGCAAAAGAGAGA 59.928 47.619 0.00 0.00 34.64 3.10
841 847 1.197949 GCGAAAGGGCAAAAGAGAGAC 59.802 52.381 0.00 0.00 0.00 3.36
842 848 2.494059 CGAAAGGGCAAAAGAGAGACA 58.506 47.619 0.00 0.00 0.00 3.41
843 849 2.878406 CGAAAGGGCAAAAGAGAGACAA 59.122 45.455 0.00 0.00 0.00 3.18
844 850 3.503748 CGAAAGGGCAAAAGAGAGACAAT 59.496 43.478 0.00 0.00 0.00 2.71
845 851 4.022849 CGAAAGGGCAAAAGAGAGACAATT 60.023 41.667 0.00 0.00 0.00 2.32
846 852 5.507985 CGAAAGGGCAAAAGAGAGACAATTT 60.508 40.000 0.00 0.00 0.00 1.82
847 853 5.876651 AAGGGCAAAAGAGAGACAATTTT 57.123 34.783 0.00 0.00 0.00 1.82
848 854 5.876651 AGGGCAAAAGAGAGACAATTTTT 57.123 34.783 0.00 0.00 0.00 1.94
920 933 4.821589 CTCCTCCGCCTGTTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
983 998 4.035102 GCCCCACTCCACCTCCAC 62.035 72.222 0.00 0.00 0.00 4.02
1335 1353 1.213013 CTCCGTCGAGTTCCACCTG 59.787 63.158 0.00 0.00 0.00 4.00
1475 1541 0.040336 GATCGCGCTCTCCATTACGA 60.040 55.000 5.56 0.00 0.00 3.43
1476 1542 0.598562 ATCGCGCTCTCCATTACGAT 59.401 50.000 5.56 0.00 35.59 3.73
1477 1543 0.384309 TCGCGCTCTCCATTACGATT 59.616 50.000 5.56 0.00 0.00 3.34
1478 1544 1.202371 TCGCGCTCTCCATTACGATTT 60.202 47.619 5.56 0.00 0.00 2.17
1480 1546 2.153247 CGCGCTCTCCATTACGATTTAC 59.847 50.000 5.56 0.00 0.00 2.01
1523 1602 7.527568 TTACTTGTTAAACCCCCAAGTATTG 57.472 36.000 13.37 0.00 45.77 1.90
1576 1655 2.305052 ACAGAACCCAACTAACCCTAGC 59.695 50.000 0.00 0.00 0.00 3.42
1583 1662 3.896272 CCCAACTAACCCTAGCTAGGTAG 59.104 52.174 33.00 28.80 42.03 3.18
1585 1664 4.583907 CCAACTAACCCTAGCTAGGTAGTC 59.416 50.000 29.64 0.00 42.03 2.59
1684 1843 5.625150 ACTCTTTGTCTTGCCTCTAAATGT 58.375 37.500 0.00 0.00 0.00 2.71
1755 1914 2.633657 GCACGTCTGCACCACTTG 59.366 61.111 0.00 0.00 43.62 3.16
1756 1915 1.887242 GCACGTCTGCACCACTTGA 60.887 57.895 2.53 0.00 43.62 3.02
1757 1916 1.436195 GCACGTCTGCACCACTTGAA 61.436 55.000 2.53 0.00 43.62 2.69
1758 1917 1.229428 CACGTCTGCACCACTTGAAT 58.771 50.000 0.00 0.00 0.00 2.57
1759 1918 1.603802 CACGTCTGCACCACTTGAATT 59.396 47.619 0.00 0.00 0.00 2.17
1776 1939 4.693283 TGAATTAAGTACCTCATGCTCGG 58.307 43.478 0.00 0.00 0.00 4.63
1797 1960 5.416013 TCGGCATCGTATCTCTAGATGATTT 59.584 40.000 8.62 0.00 43.06 2.17
1851 2014 5.115472 CACAATTACACTTTCACGACATTGC 59.885 40.000 0.00 0.00 0.00 3.56
1858 2021 1.594194 TTCACGACATTGCCCATGCC 61.594 55.000 0.00 0.00 36.14 4.40
1867 2030 0.925558 TTGCCCATGCCCTCATTCTA 59.074 50.000 0.00 0.00 36.33 2.10
1909 2072 3.265791 GTTACTTGCAGTCTAGCAGCAT 58.734 45.455 0.00 0.00 46.54 3.79
1910 2073 2.486472 ACTTGCAGTCTAGCAGCATT 57.514 45.000 0.00 0.00 46.54 3.56
2754 6499 7.906327 AGGTTGGATGCACATTTAACTATTTT 58.094 30.769 0.00 0.00 0.00 1.82
2824 7829 2.150390 TGTGCTTCTAAATGCAAGCGA 58.850 42.857 0.00 0.00 46.83 4.93
2846 7851 7.386848 AGCGAACTCTGCTTTTTAACTATGTTA 59.613 33.333 0.00 0.00 40.48 2.41
2914 8081 9.895138 GTACATTAACTAGGTCCAAAGGATTAA 57.105 33.333 0.00 0.00 32.73 1.40
3031 8216 4.739195 TGTGTTAACTTTTGGTTGAGTGC 58.261 39.130 7.22 0.00 38.75 4.40
3033 8218 5.034797 GTGTTAACTTTTGGTTGAGTGCTC 58.965 41.667 7.22 0.00 38.75 4.26
3034 8219 4.702612 TGTTAACTTTTGGTTGAGTGCTCA 59.297 37.500 7.22 0.00 38.75 4.26
3035 8220 5.163663 TGTTAACTTTTGGTTGAGTGCTCAG 60.164 40.000 7.22 0.00 41.13 3.35
3107 8454 7.439157 AAATTGCCCTTAAATTTTCTCTTGC 57.561 32.000 0.00 0.00 34.37 4.01
3198 8546 1.671054 GCGTTGTGGGCAAGAGCTA 60.671 57.895 0.00 0.00 41.70 3.32
3204 8552 0.458716 GTGGGCAAGAGCTACGTCTC 60.459 60.000 0.00 0.00 41.70 3.36
3513 8873 6.255670 CGTGCTAAACTATTGCTAGATTCACA 59.744 38.462 0.00 0.00 0.00 3.58
3521 8881 5.869753 ATTGCTAGATTCACAGTGTGTTC 57.130 39.130 22.29 18.82 34.79 3.18
3605 9226 8.583296 TCCTAGATTCATCAGACATCTTACATG 58.417 37.037 0.00 0.00 0.00 3.21
3606 9227 7.818446 CCTAGATTCATCAGACATCTTACATGG 59.182 40.741 0.00 0.00 0.00 3.66
3607 9228 7.370905 AGATTCATCAGACATCTTACATGGA 57.629 36.000 0.00 0.00 0.00 3.41
3608 9229 7.443477 AGATTCATCAGACATCTTACATGGAG 58.557 38.462 0.00 0.00 0.00 3.86
3609 9230 6.796785 TTCATCAGACATCTTACATGGAGA 57.203 37.500 0.00 0.04 0.00 3.71
3610 9231 6.796785 TCATCAGACATCTTACATGGAGAA 57.203 37.500 0.00 0.00 0.00 2.87
3611 9232 7.186570 TCATCAGACATCTTACATGGAGAAA 57.813 36.000 0.00 0.00 0.00 2.52
3612 9233 7.623630 TCATCAGACATCTTACATGGAGAAAA 58.376 34.615 0.00 0.00 0.00 2.29
3613 9234 7.767659 TCATCAGACATCTTACATGGAGAAAAG 59.232 37.037 0.00 0.00 0.00 2.27
3614 9235 7.244886 TCAGACATCTTACATGGAGAAAAGA 57.755 36.000 0.00 0.00 32.85 2.52
3615 9236 7.326454 TCAGACATCTTACATGGAGAAAAGAG 58.674 38.462 0.00 0.00 31.90 2.85
3616 9237 7.179160 TCAGACATCTTACATGGAGAAAAGAGA 59.821 37.037 0.00 0.00 31.90 3.10
3617 9238 7.986320 CAGACATCTTACATGGAGAAAAGAGAT 59.014 37.037 0.00 0.00 31.90 2.75
3618 9239 8.547173 AGACATCTTACATGGAGAAAAGAGATT 58.453 33.333 0.00 0.00 31.90 2.40
3619 9240 8.729805 ACATCTTACATGGAGAAAAGAGATTC 57.270 34.615 0.00 0.00 31.90 2.52
3620 9241 8.547173 ACATCTTACATGGAGAAAAGAGATTCT 58.453 33.333 0.00 0.00 42.24 2.40
3623 9244 8.478877 TCTTACATGGAGAAAAGAGATTCTACC 58.521 37.037 0.00 0.00 39.17 3.18
3624 9245 6.627087 ACATGGAGAAAAGAGATTCTACCA 57.373 37.500 0.00 0.00 39.17 3.25
3625 9246 7.205515 ACATGGAGAAAAGAGATTCTACCAT 57.794 36.000 0.00 11.71 42.06 3.55
3626 9247 7.637511 ACATGGAGAAAAGAGATTCTACCATT 58.362 34.615 13.50 7.27 40.89 3.16
3627 9248 7.772757 ACATGGAGAAAAGAGATTCTACCATTC 59.227 37.037 13.50 0.00 40.89 2.67
3628 9249 7.257790 TGGAGAAAAGAGATTCTACCATTCA 57.742 36.000 0.00 0.00 39.17 2.57
3629 9250 7.106239 TGGAGAAAAGAGATTCTACCATTCAC 58.894 38.462 0.00 0.00 39.17 3.18
3630 9251 6.256757 GGAGAAAAGAGATTCTACCATTCACG 59.743 42.308 0.00 0.00 39.70 4.35
3631 9252 6.109359 AGAAAAGAGATTCTACCATTCACGG 58.891 40.000 0.00 0.00 37.88 4.94
3632 9253 4.408182 AAGAGATTCTACCATTCACGGG 57.592 45.455 0.00 0.00 0.00 5.28
3633 9254 3.643237 AGAGATTCTACCATTCACGGGA 58.357 45.455 0.00 0.00 0.00 5.14
3634 9255 3.639094 AGAGATTCTACCATTCACGGGAG 59.361 47.826 0.00 0.00 38.52 4.30
3635 9256 3.637229 GAGATTCTACCATTCACGGGAGA 59.363 47.826 0.00 0.00 44.84 3.71
3636 9257 4.227197 AGATTCTACCATTCACGGGAGAT 58.773 43.478 0.00 0.00 45.84 2.75
3637 9258 4.282195 AGATTCTACCATTCACGGGAGATC 59.718 45.833 0.00 0.00 45.84 2.75
3748 9370 8.719645 ATCACTAGCAACCTCTCTTCTATATT 57.280 34.615 0.00 0.00 0.00 1.28
4006 10708 8.287439 TGAAAAACCTGATAAGTTTTCAGTGA 57.713 30.769 18.37 0.00 44.49 3.41
4068 10783 8.937634 ACAGATAAACCACGGTAAAATAGTAG 57.062 34.615 0.00 0.00 0.00 2.57
4173 10893 2.160205 TGTGGAAGGAGAGAGTACGTG 58.840 52.381 0.00 0.00 0.00 4.49
4238 10987 1.872952 TGGAGCATTTCTGACACAACG 59.127 47.619 0.00 0.00 0.00 4.10
4255 11004 5.643348 ACACAACGCTCAATGAATATGAGAA 59.357 36.000 7.67 0.00 45.74 2.87
4257 11006 6.631636 CACAACGCTCAATGAATATGAGAATG 59.368 38.462 7.67 5.29 45.74 2.67
4367 11289 1.164411 CGTGCATGGTAGAAAAGCCA 58.836 50.000 0.00 0.00 39.33 4.75
4377 11299 4.287067 TGGTAGAAAAGCCAGTCTCATCTT 59.713 41.667 0.00 0.00 0.00 2.40
4378 11300 5.483937 TGGTAGAAAAGCCAGTCTCATCTTA 59.516 40.000 0.00 0.00 0.00 2.10
4379 11301 5.813157 GGTAGAAAAGCCAGTCTCATCTTAC 59.187 44.000 0.00 0.00 0.00 2.34
4380 11302 5.489792 AGAAAAGCCAGTCTCATCTTACA 57.510 39.130 0.00 0.00 0.00 2.41
4381 11303 6.059787 AGAAAAGCCAGTCTCATCTTACAT 57.940 37.500 0.00 0.00 0.00 2.29
4413 11335 5.835257 AGTCAAATCATTCAACACCACAAG 58.165 37.500 0.00 0.00 0.00 3.16
4425 11347 9.679661 ATTCAACACCACAAGTATGATGTTATA 57.320 29.630 0.00 0.00 32.98 0.98
4491 11414 3.475575 TGCTGCAATCTGTCACTACAAA 58.524 40.909 0.00 0.00 34.49 2.83
4492 11415 3.499537 TGCTGCAATCTGTCACTACAAAG 59.500 43.478 0.00 0.00 34.49 2.77
4493 11416 3.499918 GCTGCAATCTGTCACTACAAAGT 59.500 43.478 0.00 0.00 34.49 2.66
4494 11417 4.023707 GCTGCAATCTGTCACTACAAAGTT 60.024 41.667 0.00 0.00 34.49 2.66
4495 11418 5.422666 TGCAATCTGTCACTACAAAGTTG 57.577 39.130 0.00 0.00 34.49 3.16
4496 11419 4.881273 TGCAATCTGTCACTACAAAGTTGT 59.119 37.500 1.75 1.75 44.86 3.32
4497 11420 6.052360 TGCAATCTGTCACTACAAAGTTGTA 58.948 36.000 3.97 3.97 42.35 2.41
4548 11601 2.038689 TCGTAAGGGGTGCATGTGTTTA 59.961 45.455 0.00 0.00 38.47 2.01
4578 11631 6.019237 CAGTGCTTGTGTACTTATATCTGCTG 60.019 42.308 0.00 0.00 37.02 4.41
4594 11647 5.420725 TCTGCTGTCTATTTTTCTGGCTA 57.579 39.130 0.00 0.00 0.00 3.93
4886 12783 2.715763 ACTGAACTCTTGGGGTAGGA 57.284 50.000 0.00 0.00 0.00 2.94
4923 12823 3.628008 ACGAGAAGAAACCCCAAAAAGT 58.372 40.909 0.00 0.00 0.00 2.66
4933 12833 4.200838 ACCCCAAAAAGTTTGTCTGTTG 57.799 40.909 0.00 0.00 0.00 3.33
4961 12866 0.944386 TTGCTTCTCCAAAGTGCGAC 59.056 50.000 0.00 0.00 0.00 5.19
4974 12879 5.399301 CCAAAGTGCGACAGAACAAAATTAG 59.601 40.000 0.00 0.00 0.00 1.73
5000 12905 2.760092 AGTCAGCAACCACAACAACATT 59.240 40.909 0.00 0.00 0.00 2.71
5077 12982 6.389906 AGTAGCCAAAGTTTACATTTCATGC 58.610 36.000 0.00 0.00 0.00 4.06
5223 16528 9.498176 AATATAAAGACGTTTTAGGTCACTGTT 57.502 29.630 0.00 0.00 35.60 3.16
5227 16532 5.850614 AGACGTTTTAGGTCACTGTTATGT 58.149 37.500 0.00 0.00 35.60 2.29
5228 16533 5.694910 AGACGTTTTAGGTCACTGTTATGTG 59.305 40.000 0.00 0.00 35.60 3.21
5230 16535 4.378046 CGTTTTAGGTCACTGTTATGTGGC 60.378 45.833 0.00 0.00 41.38 5.01
5232 16537 2.479566 AGGTCACTGTTATGTGGCAG 57.520 50.000 1.78 0.00 43.64 4.85
5233 16538 1.699634 AGGTCACTGTTATGTGGCAGT 59.300 47.619 1.78 0.00 43.64 4.40
5345 16935 2.093973 GTCAGGTGACGATTGTGGATCT 60.094 50.000 0.00 0.00 35.12 2.75
5385 16975 2.611292 CGATGAGGTGATCAAGAAAGCC 59.389 50.000 0.00 0.00 42.53 4.35
5547 17140 4.321718 CCATTCGCCTACAAGATGATGAT 58.678 43.478 0.00 0.00 0.00 2.45
5558 17151 2.424557 AGATGATGATGGCGATCTTGC 58.575 47.619 10.25 0.42 0.00 4.01
5624 17218 2.288152 TGGAAAAGAAATCGCTGGTTGC 60.288 45.455 0.00 0.00 38.57 4.17
5637 17251 0.472044 TGGTTGCAAGTGTAGGCTCA 59.528 50.000 0.00 0.00 0.00 4.26
5760 17458 1.211212 CAGTGATGAATGCAGGGGAGA 59.789 52.381 0.00 0.00 0.00 3.71
5761 17459 1.918262 AGTGATGAATGCAGGGGAGAA 59.082 47.619 0.00 0.00 0.00 2.87
5762 17460 2.092538 AGTGATGAATGCAGGGGAGAAG 60.093 50.000 0.00 0.00 0.00 2.85
5763 17461 1.316651 GATGAATGCAGGGGAGAAGC 58.683 55.000 0.00 0.00 0.00 3.86
5764 17462 0.627451 ATGAATGCAGGGGAGAAGCA 59.373 50.000 0.00 0.00 43.14 3.91
5765 17463 0.405198 TGAATGCAGGGGAGAAGCAA 59.595 50.000 0.00 0.00 42.15 3.91
5766 17464 1.203038 TGAATGCAGGGGAGAAGCAAA 60.203 47.619 0.00 0.00 42.15 3.68
5767 17465 1.895131 GAATGCAGGGGAGAAGCAAAA 59.105 47.619 0.00 0.00 42.15 2.44
5768 17466 2.242882 ATGCAGGGGAGAAGCAAAAT 57.757 45.000 0.00 0.00 42.15 1.82
5769 17467 1.259609 TGCAGGGGAGAAGCAAAATG 58.740 50.000 0.00 0.00 34.97 2.32
5770 17468 0.108472 GCAGGGGAGAAGCAAAATGC 60.108 55.000 0.00 0.00 45.46 3.56
5786 17484 6.917533 GCAAAATGCAGCCTGATATAATACT 58.082 36.000 0.00 0.00 44.26 2.12
5787 17485 7.025963 GCAAAATGCAGCCTGATATAATACTC 58.974 38.462 0.00 0.00 44.26 2.59
5788 17486 7.533426 CAAAATGCAGCCTGATATAATACTCC 58.467 38.462 0.00 0.00 0.00 3.85
5789 17487 6.378661 AATGCAGCCTGATATAATACTCCA 57.621 37.500 0.00 0.00 0.00 3.86
5790 17488 5.823861 TGCAGCCTGATATAATACTCCAA 57.176 39.130 0.00 0.00 0.00 3.53
5791 17489 5.551233 TGCAGCCTGATATAATACTCCAAC 58.449 41.667 0.00 0.00 0.00 3.77
5792 17490 4.938226 GCAGCCTGATATAATACTCCAACC 59.062 45.833 0.00 0.00 0.00 3.77
5793 17491 5.513094 GCAGCCTGATATAATACTCCAACCA 60.513 44.000 0.00 0.00 0.00 3.67
5794 17492 6.533730 CAGCCTGATATAATACTCCAACCAA 58.466 40.000 0.00 0.00 0.00 3.67
5795 17493 6.652481 CAGCCTGATATAATACTCCAACCAAG 59.348 42.308 0.00 0.00 0.00 3.61
5796 17494 6.330250 AGCCTGATATAATACTCCAACCAAGT 59.670 38.462 0.00 0.00 0.00 3.16
5797 17495 7.512746 AGCCTGATATAATACTCCAACCAAGTA 59.487 37.037 0.00 0.00 33.94 2.24
5798 17496 7.819900 GCCTGATATAATACTCCAACCAAGTAG 59.180 40.741 0.00 0.00 32.98 2.57
5799 17497 8.314751 CCTGATATAATACTCCAACCAAGTAGG 58.685 40.741 0.00 0.00 45.67 3.18
5800 17498 7.676947 TGATATAATACTCCAACCAAGTAGGC 58.323 38.462 0.00 0.00 43.14 3.93
5801 17499 5.968676 ATAATACTCCAACCAAGTAGGCA 57.031 39.130 0.00 0.00 43.14 4.75
5802 17500 3.914426 ATACTCCAACCAAGTAGGCAG 57.086 47.619 0.00 0.00 43.14 4.85
5803 17501 0.693049 ACTCCAACCAAGTAGGCAGG 59.307 55.000 0.00 0.00 43.14 4.85
5804 17502 0.035056 CTCCAACCAAGTAGGCAGGG 60.035 60.000 0.00 0.00 43.14 4.45
5805 17503 1.000896 CCAACCAAGTAGGCAGGGG 60.001 63.158 0.00 0.00 43.14 4.79
5806 17504 1.497309 CCAACCAAGTAGGCAGGGGA 61.497 60.000 0.00 0.00 43.14 4.81
5807 17505 0.035056 CAACCAAGTAGGCAGGGGAG 60.035 60.000 0.00 0.00 43.14 4.30
5852 17550 4.733850 TGCAACTACTCTGTCTACAATCG 58.266 43.478 0.00 0.00 0.00 3.34
6021 17888 5.176223 GTGTGAACTCCAGCAAATTTGATTG 59.824 40.000 22.31 17.02 0.00 2.67
6085 18024 1.866853 GAGCAAACCAAGGGGAAGCG 61.867 60.000 0.00 0.00 38.05 4.68
6120 18059 6.133356 ACAAGAGACCAAGGGTTTTTATTCA 58.867 36.000 0.00 0.00 35.25 2.57
6159 18098 4.408276 TCCATCTAAGATCTAACCTCCCG 58.592 47.826 0.00 0.00 0.00 5.14
6209 18148 9.608617 CAGAATTGCATAATATCTGCTAACAAG 57.391 33.333 10.54 0.00 40.34 3.16
6212 18151 8.681486 ATTGCATAATATCTGCTAACAAGACA 57.319 30.769 10.54 0.00 40.34 3.41
6216 18155 9.787532 GCATAATATCTGCTAACAAGACAAAAA 57.212 29.630 3.58 0.00 36.68 1.94
6323 18262 9.614792 GATCAGTTCAAAATATTACAGTACCCT 57.385 33.333 0.00 0.00 0.00 4.34
6421 18360 4.803908 CCGGCTCCTCCTTTGGGC 62.804 72.222 0.00 0.00 0.00 5.36
6538 18477 0.868406 GTCCAAACTTCTGCTCCACG 59.132 55.000 0.00 0.00 0.00 4.94
6572 18511 6.960431 CGTTTCAATCTGCAAAACAAACAAAT 59.040 30.769 10.62 0.00 33.51 2.32
6574 18513 9.934190 GTTTCAATCTGCAAAACAAACAAATAT 57.066 25.926 6.16 0.00 33.97 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.627699 TCCAAGAAAACCTCCATGTTGC 59.372 45.455 0.00 0.00 0.00 4.17
21 22 8.837389 GTGGTATACATATTCCAAGAAAACCTC 58.163 37.037 5.01 0.00 35.35 3.85
30 31 5.069914 AGCACTCGTGGTATACATATTCCAA 59.930 40.000 5.01 0.00 39.83 3.53
33 34 8.758633 ATAAAGCACTCGTGGTATACATATTC 57.241 34.615 5.01 0.00 40.87 1.75
40 41 7.065324 CCTGAAAAATAAAGCACTCGTGGTATA 59.935 37.037 1.83 0.00 40.87 1.47
50 51 5.403466 CACTGAAGCCTGAAAAATAAAGCAC 59.597 40.000 0.00 0.00 0.00 4.40
143 149 2.061773 CCGAGACAAAGCACACTACAG 58.938 52.381 0.00 0.00 0.00 2.74
152 158 0.603975 AGGCAGAACCGAGACAAAGC 60.604 55.000 0.00 0.00 46.52 3.51
193 199 5.977725 AGTGCACTGTCATATTGTATCGTAC 59.022 40.000 20.97 0.00 0.00 3.67
198 204 4.774124 AGCAGTGCACTGTCATATTGTAT 58.226 39.130 39.30 16.02 45.45 2.29
222 228 0.036010 AACCAAGCGATCTCCCACTG 60.036 55.000 0.00 0.00 0.00 3.66
238 244 0.608130 GGTGCCCATCCAAGAAAACC 59.392 55.000 0.00 0.00 0.00 3.27
240 246 2.397044 AAGGTGCCCATCCAAGAAAA 57.603 45.000 0.00 0.00 0.00 2.29
244 250 1.463674 GTGTAAGGTGCCCATCCAAG 58.536 55.000 0.00 0.00 0.00 3.61
371 377 6.213677 CCCATCATGATATGCAGAAACAAAG 58.786 40.000 8.15 0.00 0.00 2.77
410 416 1.738099 CGAGAGGAAACCACCGCTG 60.738 63.158 0.00 0.00 39.97 5.18
453 459 0.883833 AGCATGACCAAGAAAAGCCG 59.116 50.000 0.00 0.00 0.00 5.52
456 462 3.572584 GAAGCAGCATGACCAAGAAAAG 58.427 45.455 0.00 0.00 39.69 2.27
468 474 0.106318 GGATCCCAAGGAAGCAGCAT 60.106 55.000 0.00 0.00 34.34 3.79
478 484 1.827969 AGAAGTCACTCGGATCCCAAG 59.172 52.381 6.06 6.71 0.00 3.61
518 524 4.562143 GGTGTAAGTCGTTTCAGTACCCAT 60.562 45.833 0.00 0.00 0.00 4.00
533 539 4.640771 ATGAGGTCAACATGGTGTAAGT 57.359 40.909 11.27 0.00 0.00 2.24
547 553 3.616076 CGATCTAGATGGCCAATGAGGTC 60.616 52.174 10.96 11.87 44.53 3.85
548 554 2.301296 CGATCTAGATGGCCAATGAGGT 59.699 50.000 10.96 2.41 40.61 3.85
549 555 2.301296 ACGATCTAGATGGCCAATGAGG 59.699 50.000 10.96 0.00 41.84 3.86
550 556 3.257873 AGACGATCTAGATGGCCAATGAG 59.742 47.826 10.96 7.22 0.00 2.90
551 557 3.234353 AGACGATCTAGATGGCCAATGA 58.766 45.455 10.96 6.14 0.00 2.57
552 558 3.674528 AGACGATCTAGATGGCCAATG 57.325 47.619 10.96 0.00 0.00 2.82
557 563 2.812591 TCCGTAAGACGATCTAGATGGC 59.187 50.000 10.74 4.95 46.05 4.40
570 576 2.681390 GCTGGTCTCTCTCTCCGTAAGA 60.681 54.545 0.00 0.00 43.02 2.10
571 577 1.673920 GCTGGTCTCTCTCTCCGTAAG 59.326 57.143 0.00 0.00 0.00 2.34
572 578 1.004394 TGCTGGTCTCTCTCTCCGTAA 59.996 52.381 0.00 0.00 0.00 3.18
573 579 0.618981 TGCTGGTCTCTCTCTCCGTA 59.381 55.000 0.00 0.00 0.00 4.02
574 580 0.963355 GTGCTGGTCTCTCTCTCCGT 60.963 60.000 0.00 0.00 0.00 4.69
575 581 1.806568 GTGCTGGTCTCTCTCTCCG 59.193 63.158 0.00 0.00 0.00 4.63
576 582 1.806568 CGTGCTGGTCTCTCTCTCC 59.193 63.158 0.00 0.00 0.00 3.71
577 583 1.138671 GCGTGCTGGTCTCTCTCTC 59.861 63.158 0.00 0.00 0.00 3.20
578 584 1.304052 AGCGTGCTGGTCTCTCTCT 60.304 57.895 0.00 0.00 0.00 3.10
579 585 1.138671 GAGCGTGCTGGTCTCTCTC 59.861 63.158 0.00 0.00 41.93 3.20
580 586 1.181741 TTGAGCGTGCTGGTCTCTCT 61.182 55.000 0.00 0.00 45.46 3.10
581 587 0.319900 TTTGAGCGTGCTGGTCTCTC 60.320 55.000 0.00 0.00 45.46 3.20
582 588 0.320247 CTTTGAGCGTGCTGGTCTCT 60.320 55.000 0.00 0.00 45.46 3.10
583 589 1.905922 GCTTTGAGCGTGCTGGTCTC 61.906 60.000 0.00 0.85 45.46 3.36
584 590 1.963338 GCTTTGAGCGTGCTGGTCT 60.963 57.895 0.00 0.00 45.46 3.85
585 591 2.558313 GCTTTGAGCGTGCTGGTC 59.442 61.111 0.00 2.35 45.46 4.02
594 600 3.793144 CAGGTCGGCGCTTTGAGC 61.793 66.667 7.64 12.86 38.02 4.26
595 601 2.048222 TCAGGTCGGCGCTTTGAG 60.048 61.111 7.64 0.00 0.00 3.02
596 602 2.357034 GTCAGGTCGGCGCTTTGA 60.357 61.111 7.64 2.18 0.00 2.69
597 603 2.664851 TGTCAGGTCGGCGCTTTG 60.665 61.111 7.64 0.00 0.00 2.77
598 604 2.665185 GTGTCAGGTCGGCGCTTT 60.665 61.111 7.64 0.00 0.00 3.51
599 605 3.865929 CTGTGTCAGGTCGGCGCTT 62.866 63.158 7.64 0.00 0.00 4.68
600 606 4.363990 CTGTGTCAGGTCGGCGCT 62.364 66.667 7.64 0.00 0.00 5.92
602 608 4.662961 TGCTGTGTCAGGTCGGCG 62.663 66.667 0.00 0.00 38.61 6.46
603 609 1.845809 CTTTGCTGTGTCAGGTCGGC 61.846 60.000 0.00 0.00 36.59 5.54
604 610 1.230635 CCTTTGCTGTGTCAGGTCGG 61.231 60.000 0.00 0.00 31.21 4.79
605 611 1.845809 GCCTTTGCTGTGTCAGGTCG 61.846 60.000 0.00 0.00 31.21 4.79
606 612 1.845809 CGCCTTTGCTGTGTCAGGTC 61.846 60.000 0.00 0.00 34.43 3.85
607 613 1.893808 CGCCTTTGCTGTGTCAGGT 60.894 57.895 0.00 0.00 34.43 4.00
608 614 2.949106 CGCCTTTGCTGTGTCAGG 59.051 61.111 0.00 0.00 34.43 3.86
609 615 2.253452 GCGCCTTTGCTGTGTCAG 59.747 61.111 0.00 0.00 34.43 3.51
610 616 3.286751 GGCGCCTTTGCTGTGTCA 61.287 61.111 22.15 0.00 34.43 3.58
611 617 4.389576 CGGCGCCTTTGCTGTGTC 62.390 66.667 26.68 0.00 36.47 3.67
655 661 4.410400 CTCCTGGTCCAACCCGGC 62.410 72.222 0.00 0.00 41.82 6.13
656 662 1.774894 TTTCTCCTGGTCCAACCCGG 61.775 60.000 0.00 0.00 43.25 5.73
657 663 0.109723 TTTTCTCCTGGTCCAACCCG 59.890 55.000 0.00 0.00 37.50 5.28
658 664 2.041755 AGATTTTCTCCTGGTCCAACCC 59.958 50.000 0.00 0.00 37.50 4.11
659 665 3.441500 AGATTTTCTCCTGGTCCAACC 57.558 47.619 0.00 0.00 39.22 3.77
660 666 5.167303 ACTAGATTTTCTCCTGGTCCAAC 57.833 43.478 0.00 0.00 0.00 3.77
661 667 4.081642 CGACTAGATTTTCTCCTGGTCCAA 60.082 45.833 0.00 0.00 37.54 3.53
662 668 3.447586 CGACTAGATTTTCTCCTGGTCCA 59.552 47.826 0.00 0.00 37.54 4.02
663 669 3.738590 GCGACTAGATTTTCTCCTGGTCC 60.739 52.174 0.00 0.00 37.54 4.46
664 670 3.449632 GCGACTAGATTTTCTCCTGGTC 58.550 50.000 0.00 0.00 37.49 4.02
665 671 2.168728 GGCGACTAGATTTTCTCCTGGT 59.831 50.000 0.00 0.00 0.00 4.00
666 672 2.432510 AGGCGACTAGATTTTCTCCTGG 59.567 50.000 0.00 0.00 40.61 4.45
667 673 3.131223 TCAGGCGACTAGATTTTCTCCTG 59.869 47.826 9.71 9.71 40.21 3.86
668 674 3.366396 TCAGGCGACTAGATTTTCTCCT 58.634 45.455 0.00 0.00 40.21 3.69
669 675 3.802948 TCAGGCGACTAGATTTTCTCC 57.197 47.619 0.00 0.00 40.21 3.71
670 676 5.010213 ACCTATCAGGCGACTAGATTTTCTC 59.990 44.000 8.25 0.00 39.63 2.87
671 677 4.896482 ACCTATCAGGCGACTAGATTTTCT 59.104 41.667 8.25 0.00 39.63 2.52
672 678 5.203060 ACCTATCAGGCGACTAGATTTTC 57.797 43.478 8.25 0.00 39.63 2.29
673 679 4.261656 CGACCTATCAGGCGACTAGATTTT 60.262 45.833 8.25 0.00 39.63 1.82
674 680 3.253677 CGACCTATCAGGCGACTAGATTT 59.746 47.826 8.25 0.00 39.63 2.17
675 681 2.814919 CGACCTATCAGGCGACTAGATT 59.185 50.000 8.25 0.00 39.63 2.40
676 682 2.428491 CGACCTATCAGGCGACTAGAT 58.572 52.381 0.00 0.00 39.63 1.98
677 683 1.880271 CGACCTATCAGGCGACTAGA 58.120 55.000 0.00 0.00 39.63 2.43
678 684 0.238817 GCGACCTATCAGGCGACTAG 59.761 60.000 0.00 0.00 39.63 2.57
679 685 1.170919 GGCGACCTATCAGGCGACTA 61.171 60.000 0.00 0.00 39.63 2.59
680 686 2.491022 GGCGACCTATCAGGCGACT 61.491 63.158 11.48 0.00 39.63 4.18
681 687 2.027751 GGCGACCTATCAGGCGAC 59.972 66.667 11.48 6.27 39.63 5.19
682 688 2.123854 AGGCGACCTATCAGGCGA 60.124 61.111 11.48 0.00 39.63 5.54
683 689 2.336809 GAGGCGACCTATCAGGCG 59.663 66.667 0.00 0.00 39.63 5.52
684 690 1.068250 GTGAGGCGACCTATCAGGC 59.932 63.158 0.00 0.00 39.63 4.85
685 691 0.387202 CTGTGAGGCGACCTATCAGG 59.613 60.000 15.23 0.00 42.49 3.86
686 692 0.249238 GCTGTGAGGCGACCTATCAG 60.249 60.000 17.08 17.08 37.43 2.90
687 693 0.970427 TGCTGTGAGGCGACCTATCA 60.970 55.000 0.00 1.61 31.76 2.15
688 694 0.249238 CTGCTGTGAGGCGACCTATC 60.249 60.000 0.00 0.00 31.76 2.08
689 695 0.684479 TCTGCTGTGAGGCGACCTAT 60.684 55.000 0.00 0.00 31.76 2.57
690 696 0.898326 TTCTGCTGTGAGGCGACCTA 60.898 55.000 0.00 0.00 31.76 3.08
691 697 1.758440 TTTCTGCTGTGAGGCGACCT 61.758 55.000 0.00 0.00 36.03 3.85
692 698 0.884704 TTTTCTGCTGTGAGGCGACC 60.885 55.000 0.00 0.00 34.52 4.79
693 699 0.235926 GTTTTCTGCTGTGAGGCGAC 59.764 55.000 0.00 0.00 34.52 5.19
694 700 1.221466 CGTTTTCTGCTGTGAGGCGA 61.221 55.000 0.00 0.00 34.52 5.54
695 701 1.205064 CGTTTTCTGCTGTGAGGCG 59.795 57.895 0.00 0.00 34.52 5.52
696 702 1.081840 GCGTTTTCTGCTGTGAGGC 60.082 57.895 0.00 0.00 0.00 4.70
697 703 0.947244 AAGCGTTTTCTGCTGTGAGG 59.053 50.000 0.00 0.00 43.14 3.86
698 704 1.397693 CGAAGCGTTTTCTGCTGTGAG 60.398 52.381 0.00 0.00 43.14 3.51
699 705 0.581529 CGAAGCGTTTTCTGCTGTGA 59.418 50.000 0.00 0.00 43.14 3.58
700 706 3.062786 CGAAGCGTTTTCTGCTGTG 57.937 52.632 0.00 0.00 43.14 3.66
714 720 1.082104 GTGTCTTTTGCGGGCGAAG 60.082 57.895 0.00 0.00 0.00 3.79
715 721 1.169661 ATGTGTCTTTTGCGGGCGAA 61.170 50.000 0.00 0.00 0.00 4.70
716 722 1.169661 AATGTGTCTTTTGCGGGCGA 61.170 50.000 0.00 0.00 0.00 5.54
717 723 0.729140 GAATGTGTCTTTTGCGGGCG 60.729 55.000 0.00 0.00 0.00 6.13
718 724 0.388520 GGAATGTGTCTTTTGCGGGC 60.389 55.000 0.00 0.00 0.00 6.13
719 725 0.109781 CGGAATGTGTCTTTTGCGGG 60.110 55.000 0.00 0.00 33.71 6.13
720 726 0.729140 GCGGAATGTGTCTTTTGCGG 60.729 55.000 0.00 0.00 37.19 5.69
721 727 0.040514 TGCGGAATGTGTCTTTTGCG 60.041 50.000 0.00 0.00 39.31 4.85
722 728 1.786579 GTTGCGGAATGTGTCTTTTGC 59.213 47.619 0.00 0.00 0.00 3.68
723 729 2.223688 TGGTTGCGGAATGTGTCTTTTG 60.224 45.455 0.00 0.00 0.00 2.44
724 730 2.028130 TGGTTGCGGAATGTGTCTTTT 58.972 42.857 0.00 0.00 0.00 2.27
725 731 1.608590 CTGGTTGCGGAATGTGTCTTT 59.391 47.619 0.00 0.00 0.00 2.52
726 732 1.238439 CTGGTTGCGGAATGTGTCTT 58.762 50.000 0.00 0.00 0.00 3.01
727 733 1.237285 GCTGGTTGCGGAATGTGTCT 61.237 55.000 0.00 0.00 0.00 3.41
728 734 1.210155 GCTGGTTGCGGAATGTGTC 59.790 57.895 0.00 0.00 0.00 3.67
729 735 2.268076 GGCTGGTTGCGGAATGTGT 61.268 57.895 0.00 0.00 44.05 3.72
730 736 2.568090 GGCTGGTTGCGGAATGTG 59.432 61.111 0.00 0.00 44.05 3.21
731 737 3.055719 CGGCTGGTTGCGGAATGT 61.056 61.111 0.00 0.00 43.58 2.71
732 738 4.481112 GCGGCTGGTTGCGGAATG 62.481 66.667 0.00 0.00 43.58 2.67
737 743 3.764810 TTTGTTGCGGCTGGTTGCG 62.765 57.895 0.00 0.00 44.05 4.85
738 744 0.879839 ATTTTGTTGCGGCTGGTTGC 60.880 50.000 0.00 0.00 41.94 4.17
739 745 0.860533 CATTTTGTTGCGGCTGGTTG 59.139 50.000 0.00 0.00 0.00 3.77
740 746 0.249826 CCATTTTGTTGCGGCTGGTT 60.250 50.000 0.00 0.00 0.00 3.67
741 747 1.112315 TCCATTTTGTTGCGGCTGGT 61.112 50.000 0.00 0.00 0.00 4.00
742 748 0.388907 CTCCATTTTGTTGCGGCTGG 60.389 55.000 0.00 0.00 0.00 4.85
743 749 1.010419 GCTCCATTTTGTTGCGGCTG 61.010 55.000 0.00 0.00 0.00 4.85
744 750 1.290009 GCTCCATTTTGTTGCGGCT 59.710 52.632 0.00 0.00 0.00 5.52
745 751 2.088178 CGCTCCATTTTGTTGCGGC 61.088 57.895 0.00 0.00 42.46 6.53
746 752 4.151417 CGCTCCATTTTGTTGCGG 57.849 55.556 0.00 0.00 42.46 5.69
748 754 3.552604 TCTAACGCTCCATTTTGTTGC 57.447 42.857 0.00 0.00 0.00 4.17
749 755 3.853671 GCATCTAACGCTCCATTTTGTTG 59.146 43.478 0.00 0.00 0.00 3.33
750 756 3.119495 GGCATCTAACGCTCCATTTTGTT 60.119 43.478 0.00 0.00 0.00 2.83
751 757 2.423538 GGCATCTAACGCTCCATTTTGT 59.576 45.455 0.00 0.00 0.00 2.83
752 758 2.423185 TGGCATCTAACGCTCCATTTTG 59.577 45.455 0.00 0.00 0.00 2.44
753 759 2.423538 GTGGCATCTAACGCTCCATTTT 59.576 45.455 0.00 0.00 0.00 1.82
754 760 2.017049 GTGGCATCTAACGCTCCATTT 58.983 47.619 0.00 0.00 0.00 2.32
755 761 1.668419 GTGGCATCTAACGCTCCATT 58.332 50.000 0.00 0.00 0.00 3.16
756 762 0.530650 CGTGGCATCTAACGCTCCAT 60.531 55.000 0.00 0.00 32.40 3.41
757 763 1.153647 CGTGGCATCTAACGCTCCA 60.154 57.895 0.00 0.00 32.40 3.86
758 764 0.459585 TTCGTGGCATCTAACGCTCC 60.460 55.000 0.00 0.00 39.61 4.70
759 765 0.924090 CTTCGTGGCATCTAACGCTC 59.076 55.000 0.00 0.00 39.61 5.03
760 766 1.084370 GCTTCGTGGCATCTAACGCT 61.084 55.000 0.00 0.00 39.61 5.07
761 767 1.348594 GCTTCGTGGCATCTAACGC 59.651 57.895 0.00 0.00 39.61 4.84
762 768 0.739462 TGGCTTCGTGGCATCTAACG 60.739 55.000 0.00 0.00 46.76 3.18
763 769 3.153024 TGGCTTCGTGGCATCTAAC 57.847 52.632 0.00 0.00 46.76 2.34
770 776 3.267597 AAATGCGTGGCTTCGTGGC 62.268 57.895 4.88 0.00 42.18 5.01
771 777 1.442520 CAAATGCGTGGCTTCGTGG 60.443 57.895 4.88 0.00 0.00 4.94
772 778 0.168788 ATCAAATGCGTGGCTTCGTG 59.831 50.000 4.88 0.00 0.00 4.35
773 779 0.447801 GATCAAATGCGTGGCTTCGT 59.552 50.000 4.88 0.00 0.00 3.85
774 780 0.248215 GGATCAAATGCGTGGCTTCG 60.248 55.000 0.00 0.00 0.00 3.79
775 781 0.248215 CGGATCAAATGCGTGGCTTC 60.248 55.000 0.00 0.00 39.38 3.86
776 782 1.656818 CCGGATCAAATGCGTGGCTT 61.657 55.000 0.00 0.00 42.91 4.35
777 783 2.114670 CCGGATCAAATGCGTGGCT 61.115 57.895 0.00 0.00 42.91 4.75
778 784 2.408835 CCGGATCAAATGCGTGGC 59.591 61.111 0.00 0.00 42.91 5.01
779 785 2.405805 TGCCGGATCAAATGCGTGG 61.406 57.895 5.05 0.00 42.91 4.94
780 786 1.226379 GTGCCGGATCAAATGCGTG 60.226 57.895 5.05 0.00 42.91 5.34
781 787 2.749865 CGTGCCGGATCAAATGCGT 61.750 57.895 5.05 0.00 42.91 5.24
782 788 1.976478 TTCGTGCCGGATCAAATGCG 61.976 55.000 5.05 0.00 44.12 4.73
783 789 0.381801 ATTCGTGCCGGATCAAATGC 59.618 50.000 5.05 0.00 0.00 3.56
784 790 1.942657 AGATTCGTGCCGGATCAAATG 59.057 47.619 5.05 0.00 43.61 2.32
785 791 2.332063 AGATTCGTGCCGGATCAAAT 57.668 45.000 5.05 0.00 43.61 2.32
786 792 2.107950 AAGATTCGTGCCGGATCAAA 57.892 45.000 5.05 0.00 43.61 2.69
787 793 2.933906 GTTAAGATTCGTGCCGGATCAA 59.066 45.455 5.05 0.00 43.61 2.57
788 794 2.546778 GTTAAGATTCGTGCCGGATCA 58.453 47.619 5.05 0.00 43.61 2.92
789 795 1.521423 CGTTAAGATTCGTGCCGGATC 59.479 52.381 5.05 7.55 41.71 3.36
790 796 1.135527 TCGTTAAGATTCGTGCCGGAT 59.864 47.619 5.05 0.00 0.00 4.18
791 797 0.527113 TCGTTAAGATTCGTGCCGGA 59.473 50.000 5.05 0.00 0.00 5.14
792 798 0.921347 CTCGTTAAGATTCGTGCCGG 59.079 55.000 0.00 0.00 0.00 6.13
793 799 1.582502 GTCTCGTTAAGATTCGTGCCG 59.417 52.381 0.00 0.00 36.11 5.69
794 800 1.582502 CGTCTCGTTAAGATTCGTGCC 59.417 52.381 0.00 0.00 36.11 5.01
795 801 1.007319 GCGTCTCGTTAAGATTCGTGC 60.007 52.381 0.00 0.00 36.11 5.34
796 802 2.247637 TGCGTCTCGTTAAGATTCGTG 58.752 47.619 0.00 0.00 36.11 4.35
797 803 2.624316 TGCGTCTCGTTAAGATTCGT 57.376 45.000 0.00 0.00 36.11 3.85
798 804 3.105937 TGATGCGTCTCGTTAAGATTCG 58.894 45.455 7.58 0.00 36.11 3.34
799 805 4.549107 GCTTGATGCGTCTCGTTAAGATTC 60.549 45.833 7.58 0.00 36.11 2.52
800 806 3.307242 GCTTGATGCGTCTCGTTAAGATT 59.693 43.478 7.58 0.00 36.11 2.40
801 807 2.860735 GCTTGATGCGTCTCGTTAAGAT 59.139 45.455 7.58 0.00 36.11 2.40
802 808 2.259618 GCTTGATGCGTCTCGTTAAGA 58.740 47.619 7.58 0.00 31.10 2.10
803 809 2.703190 GCTTGATGCGTCTCGTTAAG 57.297 50.000 7.58 3.17 32.28 1.85
814 820 0.038343 TTTGCCCTTTCGCTTGATGC 60.038 50.000 0.00 0.00 38.57 3.91
815 821 2.030007 TCTTTTGCCCTTTCGCTTGATG 60.030 45.455 0.00 0.00 0.00 3.07
816 822 2.229784 CTCTTTTGCCCTTTCGCTTGAT 59.770 45.455 0.00 0.00 0.00 2.57
817 823 1.608590 CTCTTTTGCCCTTTCGCTTGA 59.391 47.619 0.00 0.00 0.00 3.02
818 824 1.608590 TCTCTTTTGCCCTTTCGCTTG 59.391 47.619 0.00 0.00 0.00 4.01
819 825 1.882623 CTCTCTTTTGCCCTTTCGCTT 59.117 47.619 0.00 0.00 0.00 4.68
820 826 1.072331 TCTCTCTTTTGCCCTTTCGCT 59.928 47.619 0.00 0.00 0.00 4.93
821 827 1.197949 GTCTCTCTTTTGCCCTTTCGC 59.802 52.381 0.00 0.00 0.00 4.70
822 828 2.494059 TGTCTCTCTTTTGCCCTTTCG 58.506 47.619 0.00 0.00 0.00 3.46
823 829 5.459536 AATTGTCTCTCTTTTGCCCTTTC 57.540 39.130 0.00 0.00 0.00 2.62
824 830 5.876651 AAATTGTCTCTCTTTTGCCCTTT 57.123 34.783 0.00 0.00 0.00 3.11
825 831 5.876651 AAAATTGTCTCTCTTTTGCCCTT 57.123 34.783 0.00 0.00 0.00 3.95
826 832 5.876651 AAAAATTGTCTCTCTTTTGCCCT 57.123 34.783 0.00 0.00 0.00 5.19
858 864 4.466015 TGTCTGTCTTTTGCCCTTCTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
920 933 2.828549 CGGCGGATTTGGGGGAAG 60.829 66.667 0.00 0.00 0.00 3.46
939 953 1.524008 CTGAGGGTTTTTGGTCGGGC 61.524 60.000 0.00 0.00 0.00 6.13
941 955 0.821711 TGCTGAGGGTTTTTGGTCGG 60.822 55.000 0.00 0.00 0.00 4.79
942 956 0.593128 CTGCTGAGGGTTTTTGGTCG 59.407 55.000 0.00 0.00 0.00 4.79
943 957 0.315251 GCTGCTGAGGGTTTTTGGTC 59.685 55.000 0.00 0.00 0.00 4.02
944 958 1.455383 CGCTGCTGAGGGTTTTTGGT 61.455 55.000 0.00 0.00 0.00 3.67
946 960 0.040067 GTCGCTGCTGAGGGTTTTTG 60.040 55.000 0.00 0.00 33.81 2.44
948 963 1.961277 CGTCGCTGCTGAGGGTTTT 60.961 57.895 0.00 0.00 33.81 2.43
973 988 2.203938 GGTGGAGGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
977 992 3.077556 CGGAGGTGGAGGTGGAGG 61.078 72.222 0.00 0.00 0.00 4.30
1180 1195 2.283529 TGAGGACGGAGGAGTTGGC 61.284 63.158 0.00 0.00 0.00 4.52
1181 1196 1.592223 GTGAGGACGGAGGAGTTGG 59.408 63.158 0.00 0.00 0.00 3.77
1475 1541 2.243810 ACACAACAATGGGCCGTAAAT 58.756 42.857 0.00 0.00 31.04 1.40
1476 1542 1.693627 ACACAACAATGGGCCGTAAA 58.306 45.000 0.00 0.00 31.04 2.01
1477 1543 1.609555 GAACACAACAATGGGCCGTAA 59.390 47.619 0.00 0.00 31.04 3.18
1478 1544 1.202830 AGAACACAACAATGGGCCGTA 60.203 47.619 0.00 0.00 31.04 4.02
1480 1546 0.673437 AAGAACACAACAATGGGCCG 59.327 50.000 0.00 0.00 31.04 6.13
1481 1547 2.908688 AAAGAACACAACAATGGGCC 57.091 45.000 0.00 0.00 31.04 5.80
1483 1549 5.901552 ACAAGTAAAGAACACAACAATGGG 58.098 37.500 0.00 0.00 35.48 4.00
1484 1550 8.918961 TTAACAAGTAAAGAACACAACAATGG 57.081 30.769 0.00 0.00 0.00 3.16
1489 1563 6.753279 GGGGTTTAACAAGTAAAGAACACAAC 59.247 38.462 0.00 0.00 32.22 3.32
1523 1602 5.277876 GCAGAGGTCATCATTTCATCACATC 60.278 44.000 0.00 0.00 0.00 3.06
1526 1605 3.314635 GGCAGAGGTCATCATTTCATCAC 59.685 47.826 0.00 0.00 0.00 3.06
1583 1662 7.481275 ACAGATAAGCTACTAGTAGAACGAC 57.519 40.000 30.09 17.58 35.21 4.34
1585 1664 9.205719 TCATACAGATAAGCTACTAGTAGAACG 57.794 37.037 30.09 13.86 35.21 3.95
1621 1708 9.509956 ACCAGTTAGTACAAAGCACAATTATTA 57.490 29.630 0.00 0.00 0.00 0.98
1628 1787 6.768861 ACATAAACCAGTTAGTACAAAGCACA 59.231 34.615 0.00 0.00 0.00 4.57
1629 1788 7.075741 CACATAAACCAGTTAGTACAAAGCAC 58.924 38.462 0.00 0.00 0.00 4.40
1752 1911 5.235186 CCGAGCATGAGGTACTTAATTCAAG 59.765 44.000 0.00 0.00 41.55 3.02
1753 1912 5.116180 CCGAGCATGAGGTACTTAATTCAA 58.884 41.667 0.00 0.00 41.55 2.69
1754 1913 4.693283 CCGAGCATGAGGTACTTAATTCA 58.307 43.478 0.00 0.00 41.55 2.57
1755 1914 3.495001 GCCGAGCATGAGGTACTTAATTC 59.505 47.826 0.00 0.00 41.55 2.17
1756 1915 3.118408 TGCCGAGCATGAGGTACTTAATT 60.118 43.478 0.00 0.00 32.56 1.40
1757 1916 2.434336 TGCCGAGCATGAGGTACTTAAT 59.566 45.455 0.00 0.00 32.56 1.40
1758 1917 1.828595 TGCCGAGCATGAGGTACTTAA 59.171 47.619 0.00 0.00 32.56 1.85
1759 1918 1.480789 TGCCGAGCATGAGGTACTTA 58.519 50.000 0.00 0.00 32.56 2.24
1776 1939 9.284594 GAACTAAATCATCTAGAGATACGATGC 57.715 37.037 0.00 0.00 35.64 3.91
1797 1960 8.929827 TTCGATACAAATTAACCATCGAACTA 57.070 30.769 16.59 3.40 46.99 2.24
1851 2014 2.053244 AGACTAGAATGAGGGCATGGG 58.947 52.381 0.00 0.00 34.26 4.00
1858 2021 8.498054 TGCTGATTTAAAAGACTAGAATGAGG 57.502 34.615 0.00 0.00 0.00 3.86
1867 2030 9.289782 AGTAACAGAATGCTGATTTAAAAGACT 57.710 29.630 8.02 0.00 45.17 3.24
1909 2072 5.768317 GCAGAAGGCACATACAACTTAAAA 58.232 37.500 0.00 0.00 43.97 1.52
1910 2073 5.371115 GCAGAAGGCACATACAACTTAAA 57.629 39.130 0.00 0.00 43.97 1.52
2004 4911 8.388484 AGCAAATCATAGGCAGATAAACTTAG 57.612 34.615 0.00 0.00 0.00 2.18
2237 5968 6.263344 CAAATGCTCAGTACTTCCATTCATG 58.737 40.000 10.95 0.00 0.00 3.07
2312 6044 6.980397 GGAAAATTGAGTCATTTTCAGTGTGT 59.020 34.615 25.35 9.24 44.30 3.72
2340 6072 1.816074 TCCGCACACTTAAATGGGAC 58.184 50.000 0.00 0.00 0.00 4.46
2767 6512 4.582240 CAGTGTCAGATAGATAGACAGCCA 59.418 45.833 0.00 0.00 42.36 4.75
2824 7829 7.665974 AGGCTAACATAGTTAAAAAGCAGAGTT 59.334 33.333 0.00 0.00 0.00 3.01
2918 8085 9.143155 TGTGCATGTAGGAGAAGATTTATAGTA 57.857 33.333 0.00 0.00 0.00 1.82
3031 8216 1.066358 TGCACAGAAGATGCCTCTGAG 60.066 52.381 6.83 0.00 42.69 3.35
3033 8218 2.039818 ATGCACAGAAGATGCCTCTG 57.960 50.000 0.00 0.00 42.69 3.35
3034 8219 3.647113 AGATATGCACAGAAGATGCCTCT 59.353 43.478 0.00 0.00 42.69 3.69
3035 8220 4.005487 AGATATGCACAGAAGATGCCTC 57.995 45.455 0.00 0.00 42.69 4.70
3086 8427 5.806654 AGCAAGAGAAAATTTAAGGGCAA 57.193 34.783 0.00 0.00 0.00 4.52
3107 8454 9.884465 GCTCAATACCAATAAGCATTAGTTAAG 57.116 33.333 0.00 0.00 31.76 1.85
3309 8657 5.330233 TCCTCAAGTGTAAGTGTCTCCATA 58.670 41.667 0.00 0.00 0.00 2.74
3477 8837 7.582679 GCAATAGTTTAGCACGTACAACATATG 59.417 37.037 0.00 0.00 0.00 1.78
3478 8838 7.494625 AGCAATAGTTTAGCACGTACAACATAT 59.505 33.333 0.00 0.00 0.00 1.78
3479 8839 6.814644 AGCAATAGTTTAGCACGTACAACATA 59.185 34.615 0.00 0.00 0.00 2.29
3480 8840 5.642063 AGCAATAGTTTAGCACGTACAACAT 59.358 36.000 0.00 0.00 0.00 2.71
3481 8841 4.992319 AGCAATAGTTTAGCACGTACAACA 59.008 37.500 0.00 0.00 0.00 3.33
3482 8842 5.526010 AGCAATAGTTTAGCACGTACAAC 57.474 39.130 0.00 0.00 0.00 3.32
3484 8844 6.198650 TCTAGCAATAGTTTAGCACGTACA 57.801 37.500 0.00 0.00 0.00 2.90
3485 8845 7.434307 TGAATCTAGCAATAGTTTAGCACGTAC 59.566 37.037 0.00 0.00 0.00 3.67
3486 8846 7.434307 GTGAATCTAGCAATAGTTTAGCACGTA 59.566 37.037 0.00 0.00 0.00 3.57
3487 8847 6.255887 GTGAATCTAGCAATAGTTTAGCACGT 59.744 38.462 0.00 0.00 0.00 4.49
3488 8848 6.255670 TGTGAATCTAGCAATAGTTTAGCACG 59.744 38.462 0.00 0.00 0.00 5.34
3489 8849 7.278868 ACTGTGAATCTAGCAATAGTTTAGCAC 59.721 37.037 0.00 0.00 0.00 4.40
3513 8873 1.692148 CGCACACACACGAACACACT 61.692 55.000 0.00 0.00 0.00 3.55
3521 8881 4.918060 CACGCACGCACACACACG 62.918 66.667 0.00 0.00 0.00 4.49
3605 9226 6.256757 CGTGAATGGTAGAATCTCTTTTCTCC 59.743 42.308 0.00 0.00 37.20 3.71
3606 9227 6.256757 CCGTGAATGGTAGAATCTCTTTTCTC 59.743 42.308 0.00 0.00 37.20 2.87
3607 9228 6.109359 CCGTGAATGGTAGAATCTCTTTTCT 58.891 40.000 0.00 0.00 39.28 2.52
3608 9229 5.294552 CCCGTGAATGGTAGAATCTCTTTTC 59.705 44.000 0.00 0.00 0.00 2.29
3609 9230 5.045869 TCCCGTGAATGGTAGAATCTCTTTT 60.046 40.000 0.00 0.00 0.00 2.27
3610 9231 4.469945 TCCCGTGAATGGTAGAATCTCTTT 59.530 41.667 0.00 0.00 0.00 2.52
3611 9232 4.030913 TCCCGTGAATGGTAGAATCTCTT 58.969 43.478 0.00 0.00 0.00 2.85
3612 9233 3.639094 CTCCCGTGAATGGTAGAATCTCT 59.361 47.826 0.00 0.00 0.00 3.10
3613 9234 3.637229 TCTCCCGTGAATGGTAGAATCTC 59.363 47.826 0.00 0.00 0.00 2.75
3614 9235 3.643237 TCTCCCGTGAATGGTAGAATCT 58.357 45.455 0.00 0.00 0.00 2.40
3615 9236 4.561105 GATCTCCCGTGAATGGTAGAATC 58.439 47.826 0.00 0.00 0.00 2.52
3616 9237 3.325135 GGATCTCCCGTGAATGGTAGAAT 59.675 47.826 0.00 0.00 0.00 2.40
3617 9238 2.698797 GGATCTCCCGTGAATGGTAGAA 59.301 50.000 0.00 0.00 0.00 2.10
3618 9239 2.317040 GGATCTCCCGTGAATGGTAGA 58.683 52.381 0.00 0.00 0.00 2.59
3619 9240 2.821991 GGATCTCCCGTGAATGGTAG 57.178 55.000 0.00 0.00 0.00 3.18
3631 9252 4.527038 TCCAATAGAATGTACGGGATCTCC 59.473 45.833 0.00 0.00 0.00 3.71
3632 9253 5.477291 TCTCCAATAGAATGTACGGGATCTC 59.523 44.000 0.00 0.00 0.00 2.75
3633 9254 5.394738 TCTCCAATAGAATGTACGGGATCT 58.605 41.667 0.00 0.00 0.00 2.75
3634 9255 5.723672 TCTCCAATAGAATGTACGGGATC 57.276 43.478 0.00 0.00 0.00 3.36
3635 9256 6.688073 AATCTCCAATAGAATGTACGGGAT 57.312 37.500 0.00 0.00 37.89 3.85
3636 9257 7.008332 TCTAATCTCCAATAGAATGTACGGGA 58.992 38.462 0.00 0.00 37.89 5.14
3637 9258 7.228314 TCTAATCTCCAATAGAATGTACGGG 57.772 40.000 0.00 0.00 37.89 5.28
3748 9370 5.338056 GGTGAGGTATTATTGTGTGTCAGGA 60.338 44.000 0.00 0.00 0.00 3.86
3981 9672 8.287439 TCACTGAAAACTTATCAGGTTTTTCA 57.713 30.769 8.26 7.81 46.81 2.69
4124 10840 8.273557 CACGTGCATTACAATATAAAGGTACTC 58.726 37.037 0.82 0.00 38.49 2.59
4173 10893 5.586243 ACAGATATGTGTGCACTATTCAACC 59.414 40.000 19.41 0.82 0.00 3.77
4220 10969 1.532868 AGCGTTGTGTCAGAAATGCTC 59.467 47.619 8.48 0.00 43.45 4.26
4238 10987 9.656040 ATCTCTACATTCTCATATTCATTGAGC 57.344 33.333 0.00 0.00 40.35 4.26
4304 11224 3.099141 CACTTATGCTTTGGGTGGGATT 58.901 45.455 0.00 0.00 0.00 3.01
4367 11289 8.243961 ACTAATACTGCATGTAAGATGAGACT 57.756 34.615 4.76 0.00 34.45 3.24
4377 11299 9.612066 TGAATGATTTGACTAATACTGCATGTA 57.388 29.630 0.00 0.00 35.37 2.29
4378 11300 8.510243 TGAATGATTTGACTAATACTGCATGT 57.490 30.769 0.00 0.00 0.00 3.21
4379 11301 9.229784 GTTGAATGATTTGACTAATACTGCATG 57.770 33.333 0.00 0.00 0.00 4.06
4380 11302 8.959548 TGTTGAATGATTTGACTAATACTGCAT 58.040 29.630 0.00 0.00 0.00 3.96
4381 11303 8.236586 GTGTTGAATGATTTGACTAATACTGCA 58.763 33.333 0.00 0.00 0.00 4.41
4413 11335 7.154656 TGCATGGAGACTGTATAACATCATAC 58.845 38.462 0.00 0.00 32.91 2.39
4425 11347 4.223700 TCTGAAGTAATGCATGGAGACTGT 59.776 41.667 0.00 0.00 0.00 3.55
4491 11414 5.708697 GGGTTACAATTAAGTGGCTACAACT 59.291 40.000 7.93 0.00 0.00 3.16
4492 11415 5.474189 TGGGTTACAATTAAGTGGCTACAAC 59.526 40.000 7.93 3.62 0.00 3.32
4493 11416 5.632118 TGGGTTACAATTAAGTGGCTACAA 58.368 37.500 7.93 0.00 0.00 2.41
4494 11417 5.244189 TGGGTTACAATTAAGTGGCTACA 57.756 39.130 7.93 0.00 0.00 2.74
4495 11418 4.095932 GCTGGGTTACAATTAAGTGGCTAC 59.904 45.833 7.93 0.00 0.00 3.58
4496 11419 4.263550 TGCTGGGTTACAATTAAGTGGCTA 60.264 41.667 7.93 0.00 0.00 3.93
4497 11420 3.089284 GCTGGGTTACAATTAAGTGGCT 58.911 45.455 7.93 0.00 0.00 4.75
4498 11421 2.823154 TGCTGGGTTACAATTAAGTGGC 59.177 45.455 7.93 0.00 0.00 5.01
4499 11422 3.192633 GGTGCTGGGTTACAATTAAGTGG 59.807 47.826 7.93 0.00 0.00 4.00
4500 11423 4.079253 AGGTGCTGGGTTACAATTAAGTG 58.921 43.478 0.45 0.45 0.00 3.16
4501 11424 4.079253 CAGGTGCTGGGTTACAATTAAGT 58.921 43.478 0.00 0.00 0.00 2.24
4502 11425 3.119495 GCAGGTGCTGGGTTACAATTAAG 60.119 47.826 0.00 0.00 38.21 1.85
4503 11426 2.823154 GCAGGTGCTGGGTTACAATTAA 59.177 45.455 0.00 0.00 38.21 1.40
4504 11427 2.442413 GCAGGTGCTGGGTTACAATTA 58.558 47.619 0.00 0.00 38.21 1.40
4505 11428 1.256812 GCAGGTGCTGGGTTACAATT 58.743 50.000 0.00 0.00 38.21 2.32
4506 11429 2.961424 GCAGGTGCTGGGTTACAAT 58.039 52.632 0.00 0.00 38.21 2.71
4526 11579 0.321298 ACACATGCACCCCTTACGAC 60.321 55.000 0.00 0.00 0.00 4.34
4886 12783 4.855715 TCTCGTTGACTCATGAGAAGTT 57.144 40.909 29.27 6.49 34.72 2.66
4923 12823 5.964758 AGCAATTGAGTTTCAACAGACAAA 58.035 33.333 10.34 0.00 39.45 2.83
4933 12833 5.689068 CACTTTGGAGAAGCAATTGAGTTTC 59.311 40.000 10.34 9.34 0.00 2.78
4961 12866 5.452078 TGACTTGCCCTAATTTTGTTCTG 57.548 39.130 0.00 0.00 0.00 3.02
4974 12879 1.391157 TTGTGGTTGCTGACTTGCCC 61.391 55.000 0.00 0.00 0.00 5.36
5048 12953 8.372459 TGAAATGTAAACTTTGGCTACTAGAGA 58.628 33.333 0.00 0.00 0.00 3.10
5097 13002 5.049543 CAGATAGGCATTTGCTAGAAGAAGC 60.050 44.000 2.12 0.00 43.08 3.86
5101 13006 9.494271 TTTATACAGATAGGCATTTGCTAGAAG 57.506 33.333 2.12 0.00 41.70 2.85
5136 16387 8.814931 CCCCATCTATCATAATAATTTGGCAAA 58.185 33.333 16.01 16.01 0.00 3.68
5137 16388 7.955185 ACCCCATCTATCATAATAATTTGGCAA 59.045 33.333 0.00 0.00 0.00 4.52
5138 16389 7.477864 ACCCCATCTATCATAATAATTTGGCA 58.522 34.615 0.00 0.00 0.00 4.92
5139 16390 7.961326 ACCCCATCTATCATAATAATTTGGC 57.039 36.000 0.00 0.00 0.00 4.52
5140 16391 9.312904 ACAACCCCATCTATCATAATAATTTGG 57.687 33.333 0.00 0.00 0.00 3.28
5233 16538 6.276847 CGCATATATTTAAGTTTGGGCCAAA 58.723 36.000 27.28 27.28 0.00 3.28
5250 16827 6.892658 AAATAAGACAAATGGCCGCATATA 57.107 33.333 0.00 0.00 0.00 0.86
5300 16886 3.004734 GTGACACAAAAGTAGGCATGCTT 59.995 43.478 18.92 13.45 32.06 3.91
5345 16935 1.066454 CGTCGTATGTGTATGCCTCCA 59.934 52.381 0.00 0.00 0.00 3.86
5385 16975 4.883354 GGCTTCCCCATGGCCTCG 62.883 72.222 6.09 0.00 42.31 4.63
5547 17140 1.153489 GAGCTCAGCAAGATCGCCA 60.153 57.895 9.40 0.00 29.25 5.69
5624 17218 3.883830 AGTCAGATGAGCCTACACTTG 57.116 47.619 0.00 0.00 0.00 3.16
5637 17251 3.244875 TGCCACAAACACCATAGTCAGAT 60.245 43.478 0.00 0.00 0.00 2.90
5760 17458 5.857471 TTATATCAGGCTGCATTTTGCTT 57.143 34.783 10.34 0.00 45.31 3.91
5761 17459 6.718454 AGTATTATATCAGGCTGCATTTTGCT 59.282 34.615 10.34 3.32 45.31 3.91
5762 17460 6.917533 AGTATTATATCAGGCTGCATTTTGC 58.082 36.000 10.34 0.00 45.29 3.68
5763 17461 7.175467 TGGAGTATTATATCAGGCTGCATTTTG 59.825 37.037 10.34 0.00 0.00 2.44
5764 17462 7.233632 TGGAGTATTATATCAGGCTGCATTTT 58.766 34.615 10.34 0.05 0.00 1.82
5765 17463 6.782986 TGGAGTATTATATCAGGCTGCATTT 58.217 36.000 10.34 2.78 0.00 2.32
5766 17464 6.378661 TGGAGTATTATATCAGGCTGCATT 57.621 37.500 10.34 0.00 0.00 3.56
5767 17465 6.176183 GTTGGAGTATTATATCAGGCTGCAT 58.824 40.000 10.34 8.10 0.00 3.96
5768 17466 5.513094 GGTTGGAGTATTATATCAGGCTGCA 60.513 44.000 10.34 0.00 0.00 4.41
5769 17467 4.938226 GGTTGGAGTATTATATCAGGCTGC 59.062 45.833 10.34 0.00 0.00 5.25
5770 17468 6.114187 TGGTTGGAGTATTATATCAGGCTG 57.886 41.667 8.58 8.58 0.00 4.85
5771 17469 6.330250 ACTTGGTTGGAGTATTATATCAGGCT 59.670 38.462 0.00 0.00 0.00 4.58
5772 17470 6.534634 ACTTGGTTGGAGTATTATATCAGGC 58.465 40.000 0.00 0.00 0.00 4.85
5773 17471 8.314751 CCTACTTGGTTGGAGTATTATATCAGG 58.685 40.741 0.00 0.00 30.33 3.86
5774 17472 7.819900 GCCTACTTGGTTGGAGTATTATATCAG 59.180 40.741 2.63 0.00 38.35 2.90
5775 17473 7.291416 TGCCTACTTGGTTGGAGTATTATATCA 59.709 37.037 2.63 0.00 38.35 2.15
5776 17474 7.676947 TGCCTACTTGGTTGGAGTATTATATC 58.323 38.462 2.63 0.00 38.35 1.63
5777 17475 7.256691 CCTGCCTACTTGGTTGGAGTATTATAT 60.257 40.741 2.63 0.00 38.35 0.86
5778 17476 6.042781 CCTGCCTACTTGGTTGGAGTATTATA 59.957 42.308 2.63 0.00 38.35 0.98
5779 17477 5.163195 CCTGCCTACTTGGTTGGAGTATTAT 60.163 44.000 2.63 0.00 38.35 1.28
5780 17478 4.163458 CCTGCCTACTTGGTTGGAGTATTA 59.837 45.833 2.63 0.00 38.35 0.98
5781 17479 3.054361 CCTGCCTACTTGGTTGGAGTATT 60.054 47.826 2.63 0.00 38.35 1.89
5782 17480 2.505819 CCTGCCTACTTGGTTGGAGTAT 59.494 50.000 2.63 0.00 38.35 2.12
5783 17481 1.906574 CCTGCCTACTTGGTTGGAGTA 59.093 52.381 2.63 0.00 38.35 2.59
5784 17482 0.693049 CCTGCCTACTTGGTTGGAGT 59.307 55.000 2.63 0.00 38.35 3.85
5785 17483 0.035056 CCCTGCCTACTTGGTTGGAG 60.035 60.000 2.63 0.00 38.35 3.86
5786 17484 1.497309 CCCCTGCCTACTTGGTTGGA 61.497 60.000 2.63 0.00 38.35 3.53
5787 17485 1.000896 CCCCTGCCTACTTGGTTGG 60.001 63.158 0.00 0.00 38.35 3.77
5788 17486 0.035056 CTCCCCTGCCTACTTGGTTG 60.035 60.000 0.00 0.00 38.35 3.77
5789 17487 0.178873 TCTCCCCTGCCTACTTGGTT 60.179 55.000 0.00 0.00 38.35 3.67
5790 17488 0.178873 TTCTCCCCTGCCTACTTGGT 60.179 55.000 0.00 0.00 38.35 3.67
5791 17489 0.543749 CTTCTCCCCTGCCTACTTGG 59.456 60.000 0.00 0.00 39.35 3.61
5792 17490 0.107459 GCTTCTCCCCTGCCTACTTG 60.107 60.000 0.00 0.00 0.00 3.16
5793 17491 0.547712 TGCTTCTCCCCTGCCTACTT 60.548 55.000 0.00 0.00 0.00 2.24
5794 17492 0.547712 TTGCTTCTCCCCTGCCTACT 60.548 55.000 0.00 0.00 0.00 2.57
5795 17493 0.328258 TTTGCTTCTCCCCTGCCTAC 59.672 55.000 0.00 0.00 0.00 3.18
5796 17494 1.072266 TTTTGCTTCTCCCCTGCCTA 58.928 50.000 0.00 0.00 0.00 3.93
5797 17495 0.411058 ATTTTGCTTCTCCCCTGCCT 59.589 50.000 0.00 0.00 0.00 4.75
5798 17496 0.533951 CATTTTGCTTCTCCCCTGCC 59.466 55.000 0.00 0.00 0.00 4.85
5799 17497 0.108472 GCATTTTGCTTCTCCCCTGC 60.108 55.000 0.00 0.00 40.96 4.85
5800 17498 1.203994 CTGCATTTTGCTTCTCCCCTG 59.796 52.381 0.75 0.00 45.31 4.45
5801 17499 1.553706 CTGCATTTTGCTTCTCCCCT 58.446 50.000 0.75 0.00 45.31 4.79
5802 17500 0.108472 GCTGCATTTTGCTTCTCCCC 60.108 55.000 0.00 0.00 45.31 4.81
5803 17501 0.108472 GGCTGCATTTTGCTTCTCCC 60.108 55.000 0.50 0.00 45.31 4.30
5804 17502 0.893447 AGGCTGCATTTTGCTTCTCC 59.107 50.000 0.50 0.00 45.31 3.71
5805 17503 1.542915 TCAGGCTGCATTTTGCTTCTC 59.457 47.619 10.34 0.00 45.31 2.87
5806 17504 1.624336 TCAGGCTGCATTTTGCTTCT 58.376 45.000 10.34 0.00 45.31 2.85
5807 17505 2.094390 TCATCAGGCTGCATTTTGCTTC 60.094 45.455 10.34 0.00 45.31 3.86
5852 17550 8.970691 AATTACTCAAATGTAAATGTGTGCTC 57.029 30.769 0.00 0.00 36.22 4.26
5882 17586 7.350382 TGGACTGATTTGTATAATTTAGGGCA 58.650 34.615 0.00 0.00 0.00 5.36
5895 17599 2.304180 CTGGAGTCCTGGACTGATTTGT 59.696 50.000 32.86 8.20 43.53 2.83
6021 17888 6.341316 TGTATGTTCAAGTCTATGGAGAAGC 58.659 40.000 0.00 0.00 31.96 3.86
6085 18024 2.037772 TGGTCTCTTGTTCTTCTGCTCC 59.962 50.000 0.00 0.00 0.00 4.70
6221 18160 2.830285 GCCACGTGTTTGGTCGCTT 61.830 57.895 15.65 0.00 39.09 4.68
6231 18170 1.300697 GAGAACGAAGGCCACGTGT 60.301 57.895 24.16 16.34 43.16 4.49
6232 18171 0.600255 AAGAGAACGAAGGCCACGTG 60.600 55.000 24.16 9.08 43.16 4.49
6323 18262 1.818959 CGACCGGTCCCCTGTTAACA 61.819 60.000 28.52 8.28 0.00 2.41
6421 18360 2.935481 TGGAGTGGCAAGGGAGGG 60.935 66.667 0.00 0.00 0.00 4.30
6454 18393 3.882888 TGTTTCTGTTTGTGGAGATCACC 59.117 43.478 1.62 1.62 45.48 4.02
6538 18477 1.200020 CAGATTGAAACGCCCAAGGAC 59.800 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.