Multiple sequence alignment - TraesCS7D01G509200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G509200 chr7D 100.000 2711 0 0 1 2711 612778755 612781465 0.000000e+00 5007
1 TraesCS7D01G509200 chr7B 91.743 2071 84 37 658 2711 702244512 702246512 0.000000e+00 2796
2 TraesCS7D01G509200 chr7B 93.554 605 29 2 1066 1670 664292515 664291921 0.000000e+00 893
3 TraesCS7D01G509200 chr7B 83.137 255 22 7 419 661 702244182 702244427 2.110000e-51 213
4 TraesCS7D01G509200 chr7A 90.694 1354 60 23 730 2051 703567292 703568611 0.000000e+00 1742
5 TraesCS7D01G509200 chr7A 93.058 605 39 1 1066 1670 217720262 217720863 0.000000e+00 881
6 TraesCS7D01G509200 chr1B 94.581 609 29 2 1066 1674 594500660 594501264 0.000000e+00 939
7 TraesCS7D01G509200 chr3A 94.711 605 28 2 1066 1670 146191482 146192082 0.000000e+00 937
8 TraesCS7D01G509200 chrUn 94.215 605 30 3 1066 1670 263126409 263127008 0.000000e+00 918
9 TraesCS7D01G509200 chr2B 93.212 604 30 5 1066 1669 231602179 231602771 0.000000e+00 878
10 TraesCS7D01G509200 chr2A 92.208 616 34 2 1066 1670 758111030 758110418 0.000000e+00 859
11 TraesCS7D01G509200 chr3D 77.551 392 63 17 492 869 38165690 38165310 2.110000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G509200 chr7D 612778755 612781465 2710 False 5007.0 5007 100.000 1 2711 1 chr7D.!!$F1 2710
1 TraesCS7D01G509200 chr7B 702244182 702246512 2330 False 1504.5 2796 87.440 419 2711 2 chr7B.!!$F1 2292
2 TraesCS7D01G509200 chr7B 664291921 664292515 594 True 893.0 893 93.554 1066 1670 1 chr7B.!!$R1 604
3 TraesCS7D01G509200 chr7A 703567292 703568611 1319 False 1742.0 1742 90.694 730 2051 1 chr7A.!!$F2 1321
4 TraesCS7D01G509200 chr7A 217720262 217720863 601 False 881.0 881 93.058 1066 1670 1 chr7A.!!$F1 604
5 TraesCS7D01G509200 chr1B 594500660 594501264 604 False 939.0 939 94.581 1066 1674 1 chr1B.!!$F1 608
6 TraesCS7D01G509200 chr3A 146191482 146192082 600 False 937.0 937 94.711 1066 1670 1 chr3A.!!$F1 604
7 TraesCS7D01G509200 chrUn 263126409 263127008 599 False 918.0 918 94.215 1066 1670 1 chrUn.!!$F1 604
8 TraesCS7D01G509200 chr2B 231602179 231602771 592 False 878.0 878 93.212 1066 1669 1 chr2B.!!$F1 603
9 TraesCS7D01G509200 chr2A 758110418 758111030 612 True 859.0 859 92.208 1066 1670 1 chr2A.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.250727 TGGAAAGACGAGGCCAAAGG 60.251 55.0 5.01 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1865 0.597568 CGAAGCACCAAAATGGCTGA 59.402 50.0 0.0 0.0 42.67 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.729836 ACGAAGAAAGAAAAACAAAAGAAAGC 58.270 30.769 0.00 0.00 0.00 3.51
57 58 7.148639 ACGAAGAAAGAAAAACAAAAGAAAGCC 60.149 33.333 0.00 0.00 0.00 4.35
58 59 7.148656 CGAAGAAAGAAAAACAAAAGAAAGCCA 60.149 33.333 0.00 0.00 0.00 4.75
59 60 7.977789 AGAAAGAAAAACAAAAGAAAGCCAA 57.022 28.000 0.00 0.00 0.00 4.52
60 61 8.565896 AGAAAGAAAAACAAAAGAAAGCCAAT 57.434 26.923 0.00 0.00 0.00 3.16
61 62 8.453320 AGAAAGAAAAACAAAAGAAAGCCAATG 58.547 29.630 0.00 0.00 0.00 2.82
62 63 7.920160 AAGAAAAACAAAAGAAAGCCAATGA 57.080 28.000 0.00 0.00 0.00 2.57
63 64 7.920160 AGAAAAACAAAAGAAAGCCAATGAA 57.080 28.000 0.00 0.00 0.00 2.57
64 65 8.334263 AGAAAAACAAAAGAAAGCCAATGAAA 57.666 26.923 0.00 0.00 0.00 2.69
65 66 8.791675 AGAAAAACAAAAGAAAGCCAATGAAAA 58.208 25.926 0.00 0.00 0.00 2.29
66 67 8.969121 AAAAACAAAAGAAAGCCAATGAAAAG 57.031 26.923 0.00 0.00 0.00 2.27
67 68 7.920160 AAACAAAAGAAAGCCAATGAAAAGA 57.080 28.000 0.00 0.00 0.00 2.52
68 69 7.920160 AACAAAAGAAAGCCAATGAAAAGAA 57.080 28.000 0.00 0.00 0.00 2.52
69 70 7.920160 ACAAAAGAAAGCCAATGAAAAGAAA 57.080 28.000 0.00 0.00 0.00 2.52
70 71 8.334263 ACAAAAGAAAGCCAATGAAAAGAAAA 57.666 26.923 0.00 0.00 0.00 2.29
71 72 8.791675 ACAAAAGAAAGCCAATGAAAAGAAAAA 58.208 25.926 0.00 0.00 0.00 1.94
92 93 7.835634 AAAAACAAAGCATAACGAAGGAAAA 57.164 28.000 0.00 0.00 0.00 2.29
93 94 7.835634 AAAACAAAGCATAACGAAGGAAAAA 57.164 28.000 0.00 0.00 0.00 1.94
94 95 8.432110 AAAACAAAGCATAACGAAGGAAAAAT 57.568 26.923 0.00 0.00 0.00 1.82
95 96 9.535878 AAAACAAAGCATAACGAAGGAAAAATA 57.464 25.926 0.00 0.00 0.00 1.40
96 97 9.535878 AAACAAAGCATAACGAAGGAAAAATAA 57.464 25.926 0.00 0.00 0.00 1.40
97 98 9.535878 AACAAAGCATAACGAAGGAAAAATAAA 57.464 25.926 0.00 0.00 0.00 1.40
98 99 9.191995 ACAAAGCATAACGAAGGAAAAATAAAG 57.808 29.630 0.00 0.00 0.00 1.85
99 100 9.405587 CAAAGCATAACGAAGGAAAAATAAAGA 57.594 29.630 0.00 0.00 0.00 2.52
161 162 6.710692 AAAAGAATAAAGCAAATCAAGCGG 57.289 33.333 0.00 0.00 37.01 5.52
162 163 5.643379 AAGAATAAAGCAAATCAAGCGGA 57.357 34.783 0.00 0.00 37.01 5.54
163 164 5.841957 AGAATAAAGCAAATCAAGCGGAT 57.158 34.783 0.00 0.00 38.05 4.18
164 165 6.942532 AGAATAAAGCAAATCAAGCGGATA 57.057 33.333 0.00 0.00 34.28 2.59
165 166 7.516198 AGAATAAAGCAAATCAAGCGGATAT 57.484 32.000 0.00 0.00 34.28 1.63
166 167 8.621532 AGAATAAAGCAAATCAAGCGGATATA 57.378 30.769 0.00 0.00 34.28 0.86
167 168 9.236006 AGAATAAAGCAAATCAAGCGGATATAT 57.764 29.630 0.00 0.00 34.28 0.86
170 171 7.986085 AAAGCAAATCAAGCGGATATATAGT 57.014 32.000 0.00 0.00 34.28 2.12
171 172 6.974932 AGCAAATCAAGCGGATATATAGTG 57.025 37.500 0.00 0.00 34.28 2.74
172 173 6.701340 AGCAAATCAAGCGGATATATAGTGA 58.299 36.000 0.00 0.00 34.28 3.41
173 174 7.161404 AGCAAATCAAGCGGATATATAGTGAA 58.839 34.615 0.00 0.00 34.28 3.18
174 175 7.118390 AGCAAATCAAGCGGATATATAGTGAAC 59.882 37.037 0.00 0.00 34.28 3.18
175 176 7.095229 GCAAATCAAGCGGATATATAGTGAACA 60.095 37.037 0.00 0.00 34.28 3.18
176 177 8.773645 CAAATCAAGCGGATATATAGTGAACAA 58.226 33.333 0.00 0.00 34.28 2.83
177 178 9.507329 AAATCAAGCGGATATATAGTGAACAAT 57.493 29.630 0.00 0.00 34.28 2.71
179 180 9.809096 ATCAAGCGGATATATAGTGAACAATAG 57.191 33.333 0.00 0.00 33.37 1.73
180 181 8.803235 TCAAGCGGATATATAGTGAACAATAGT 58.197 33.333 0.00 0.00 0.00 2.12
181 182 8.864024 CAAGCGGATATATAGTGAACAATAGTG 58.136 37.037 0.00 0.00 0.00 2.74
182 183 7.548097 AGCGGATATATAGTGAACAATAGTGG 58.452 38.462 0.00 0.00 0.00 4.00
183 184 6.757010 GCGGATATATAGTGAACAATAGTGGG 59.243 42.308 0.00 0.00 0.00 4.61
184 185 6.757010 CGGATATATAGTGAACAATAGTGGGC 59.243 42.308 0.00 0.00 0.00 5.36
185 186 7.048512 GGATATATAGTGAACAATAGTGGGCC 58.951 42.308 0.00 0.00 0.00 5.80
186 187 5.904984 ATATAGTGAACAATAGTGGGCCA 57.095 39.130 0.00 0.00 0.00 5.36
187 188 4.796110 ATAGTGAACAATAGTGGGCCAT 57.204 40.909 10.70 1.02 0.00 4.40
188 189 2.726821 AGTGAACAATAGTGGGCCATG 58.273 47.619 10.70 6.37 0.00 3.66
189 190 1.134946 GTGAACAATAGTGGGCCATGC 59.865 52.381 10.70 0.00 0.00 4.06
202 203 0.743097 GCCATGCCAATTCACTCTCC 59.257 55.000 0.00 0.00 0.00 3.71
203 204 1.396653 CCATGCCAATTCACTCTCCC 58.603 55.000 0.00 0.00 0.00 4.30
204 205 1.019673 CATGCCAATTCACTCTCCCG 58.980 55.000 0.00 0.00 0.00 5.14
205 206 0.620556 ATGCCAATTCACTCTCCCGT 59.379 50.000 0.00 0.00 0.00 5.28
206 207 1.271856 TGCCAATTCACTCTCCCGTA 58.728 50.000 0.00 0.00 0.00 4.02
207 208 1.207089 TGCCAATTCACTCTCCCGTAG 59.793 52.381 0.00 0.00 0.00 3.51
231 232 7.091443 AGGCGATTCCTAATAAGTAGAAATCG 58.909 38.462 10.59 10.59 45.41 3.34
232 233 6.310711 GGCGATTCCTAATAAGTAGAAATCGG 59.689 42.308 14.94 1.80 30.50 4.18
233 234 6.867293 GCGATTCCTAATAAGTAGAAATCGGT 59.133 38.462 14.94 0.00 30.50 4.69
234 235 8.025445 GCGATTCCTAATAAGTAGAAATCGGTA 58.975 37.037 14.94 0.00 30.50 4.02
238 239 8.130671 TCCTAATAAGTAGAAATCGGTATGGG 57.869 38.462 0.00 0.00 30.50 4.00
239 240 7.951806 TCCTAATAAGTAGAAATCGGTATGGGA 59.048 37.037 0.00 0.00 30.50 4.37
240 241 8.251721 CCTAATAAGTAGAAATCGGTATGGGAG 58.748 40.741 0.00 0.00 30.50 4.30
241 242 7.850935 AATAAGTAGAAATCGGTATGGGAGA 57.149 36.000 0.00 0.00 0.00 3.71
242 243 5.793030 AAGTAGAAATCGGTATGGGAGAG 57.207 43.478 0.00 0.00 0.00 3.20
243 244 5.063017 AGTAGAAATCGGTATGGGAGAGA 57.937 43.478 0.00 0.00 0.00 3.10
244 245 4.828387 AGTAGAAATCGGTATGGGAGAGAC 59.172 45.833 0.00 0.00 0.00 3.36
245 246 3.643237 AGAAATCGGTATGGGAGAGACA 58.357 45.455 0.00 0.00 0.00 3.41
246 247 4.227197 AGAAATCGGTATGGGAGAGACAT 58.773 43.478 0.00 0.00 0.00 3.06
247 248 5.394738 AGAAATCGGTATGGGAGAGACATA 58.605 41.667 0.00 0.00 0.00 2.29
248 249 5.478679 AGAAATCGGTATGGGAGAGACATAG 59.521 44.000 0.00 0.00 31.92 2.23
249 250 2.515854 TCGGTATGGGAGAGACATAGC 58.484 52.381 0.00 0.00 42.71 2.97
250 251 1.546476 CGGTATGGGAGAGACATAGCC 59.454 57.143 8.49 2.96 43.02 3.93
251 252 1.903183 GGTATGGGAGAGACATAGCCC 59.097 57.143 0.00 0.00 41.20 5.19
252 253 2.493687 GGTATGGGAGAGACATAGCCCT 60.494 54.545 0.00 0.00 41.20 5.19
253 254 2.022718 ATGGGAGAGACATAGCCCTC 57.977 55.000 0.00 0.00 41.28 4.30
254 255 0.468214 TGGGAGAGACATAGCCCTCG 60.468 60.000 0.00 0.00 41.28 4.63
255 256 1.663173 GGAGAGACATAGCCCTCGC 59.337 63.158 0.00 0.00 34.75 5.03
256 257 1.284408 GAGAGACATAGCCCTCGCG 59.716 63.158 0.00 0.00 41.18 5.87
257 258 2.136196 GAGAGACATAGCCCTCGCGG 62.136 65.000 6.13 0.00 41.18 6.46
258 259 2.442272 AGACATAGCCCTCGCGGT 60.442 61.111 6.13 0.00 41.18 5.68
259 260 2.279517 GACATAGCCCTCGCGGTG 60.280 66.667 6.13 0.00 41.18 4.94
260 261 2.758327 ACATAGCCCTCGCGGTGA 60.758 61.111 6.13 0.00 41.18 4.02
261 262 2.088674 GACATAGCCCTCGCGGTGAT 62.089 60.000 6.13 0.00 41.18 3.06
262 263 0.826256 ACATAGCCCTCGCGGTGATA 60.826 55.000 6.13 0.00 41.18 2.15
263 264 0.388649 CATAGCCCTCGCGGTGATAC 60.389 60.000 6.13 0.00 41.18 2.24
264 265 0.826256 ATAGCCCTCGCGGTGATACA 60.826 55.000 6.13 0.00 41.18 2.29
265 266 1.731433 TAGCCCTCGCGGTGATACAC 61.731 60.000 6.13 0.00 41.18 2.90
266 267 2.278596 CCCTCGCGGTGATACACG 60.279 66.667 6.13 0.00 34.83 4.49
267 268 2.278596 CCTCGCGGTGATACACGG 60.279 66.667 6.13 0.00 37.67 4.94
273 274 3.491581 CGGTGATACACGGCCTATC 57.508 57.895 0.00 2.02 34.83 2.08
274 275 0.959553 CGGTGATACACGGCCTATCT 59.040 55.000 0.00 0.00 34.83 1.98
275 276 2.156917 CGGTGATACACGGCCTATCTA 58.843 52.381 0.00 0.00 34.83 1.98
276 277 2.161808 CGGTGATACACGGCCTATCTAG 59.838 54.545 0.00 0.00 34.83 2.43
277 278 3.418995 GGTGATACACGGCCTATCTAGA 58.581 50.000 0.00 0.00 34.83 2.43
278 279 4.017808 GGTGATACACGGCCTATCTAGAT 58.982 47.826 10.73 10.73 34.83 1.98
279 280 4.096682 GGTGATACACGGCCTATCTAGATC 59.903 50.000 8.95 0.00 34.83 2.75
280 281 4.700692 GTGATACACGGCCTATCTAGATCA 59.299 45.833 8.95 0.00 0.00 2.92
281 282 4.700692 TGATACACGGCCTATCTAGATCAC 59.299 45.833 8.95 0.00 0.00 3.06
282 283 2.240279 ACACGGCCTATCTAGATCACC 58.760 52.381 8.95 8.38 0.00 4.02
283 284 2.239400 CACGGCCTATCTAGATCACCA 58.761 52.381 8.95 0.00 0.00 4.17
284 285 2.828520 CACGGCCTATCTAGATCACCAT 59.171 50.000 8.95 0.00 0.00 3.55
285 286 3.093057 ACGGCCTATCTAGATCACCATC 58.907 50.000 8.95 0.00 0.00 3.51
286 287 2.098280 CGGCCTATCTAGATCACCATCG 59.902 54.545 8.95 3.91 33.75 3.84
287 288 3.093057 GGCCTATCTAGATCACCATCGT 58.907 50.000 8.95 0.00 33.75 3.73
288 289 3.511934 GGCCTATCTAGATCACCATCGTT 59.488 47.826 8.95 0.00 33.75 3.85
289 290 4.489810 GCCTATCTAGATCACCATCGTTG 58.510 47.826 8.95 0.00 33.75 4.10
300 301 1.019673 CCATCGTTGGCATCTTCTGG 58.980 55.000 0.00 0.00 35.85 3.86
301 302 1.679944 CCATCGTTGGCATCTTCTGGT 60.680 52.381 0.00 0.00 35.85 4.00
302 303 2.086869 CATCGTTGGCATCTTCTGGTT 58.913 47.619 0.00 0.00 0.00 3.67
303 304 2.270352 TCGTTGGCATCTTCTGGTTT 57.730 45.000 0.00 0.00 0.00 3.27
304 305 3.410631 TCGTTGGCATCTTCTGGTTTA 57.589 42.857 0.00 0.00 0.00 2.01
305 306 3.950397 TCGTTGGCATCTTCTGGTTTAT 58.050 40.909 0.00 0.00 0.00 1.40
306 307 5.092554 TCGTTGGCATCTTCTGGTTTATA 57.907 39.130 0.00 0.00 0.00 0.98
307 308 5.680619 TCGTTGGCATCTTCTGGTTTATAT 58.319 37.500 0.00 0.00 0.00 0.86
308 309 5.758296 TCGTTGGCATCTTCTGGTTTATATC 59.242 40.000 0.00 0.00 0.00 1.63
309 310 5.527214 CGTTGGCATCTTCTGGTTTATATCA 59.473 40.000 0.00 0.00 0.00 2.15
310 311 6.205464 CGTTGGCATCTTCTGGTTTATATCAT 59.795 38.462 0.00 0.00 0.00 2.45
311 312 7.255242 CGTTGGCATCTTCTGGTTTATATCATT 60.255 37.037 0.00 0.00 0.00 2.57
312 313 7.514784 TGGCATCTTCTGGTTTATATCATTG 57.485 36.000 0.00 0.00 0.00 2.82
313 314 7.062322 TGGCATCTTCTGGTTTATATCATTGT 58.938 34.615 0.00 0.00 0.00 2.71
314 315 7.229306 TGGCATCTTCTGGTTTATATCATTGTC 59.771 37.037 0.00 0.00 0.00 3.18
315 316 7.446625 GGCATCTTCTGGTTTATATCATTGTCT 59.553 37.037 0.00 0.00 0.00 3.41
316 317 8.844244 GCATCTTCTGGTTTATATCATTGTCTT 58.156 33.333 0.00 0.00 0.00 3.01
322 323 9.739276 TCTGGTTTATATCATTGTCTTTTCAGT 57.261 29.630 0.00 0.00 0.00 3.41
333 334 9.477484 TCATTGTCTTTTCAGTTAGTACTTCTC 57.523 33.333 0.00 0.00 30.26 2.87
334 335 8.713271 CATTGTCTTTTCAGTTAGTACTTCTCC 58.287 37.037 0.00 0.00 30.26 3.71
335 336 7.356089 TGTCTTTTCAGTTAGTACTTCTCCA 57.644 36.000 0.00 0.00 30.26 3.86
336 337 7.788026 TGTCTTTTCAGTTAGTACTTCTCCAA 58.212 34.615 0.00 0.00 30.26 3.53
337 338 8.262227 TGTCTTTTCAGTTAGTACTTCTCCAAA 58.738 33.333 0.00 0.04 30.26 3.28
338 339 8.766151 GTCTTTTCAGTTAGTACTTCTCCAAAG 58.234 37.037 0.00 10.13 30.26 2.77
339 340 8.483758 TCTTTTCAGTTAGTACTTCTCCAAAGT 58.516 33.333 0.00 0.00 30.26 2.66
340 341 9.110502 CTTTTCAGTTAGTACTTCTCCAAAGTT 57.889 33.333 0.00 0.00 30.26 2.66
341 342 8.658499 TTTCAGTTAGTACTTCTCCAAAGTTC 57.342 34.615 0.00 0.00 30.26 3.01
342 343 7.598759 TCAGTTAGTACTTCTCCAAAGTTCT 57.401 36.000 0.00 0.00 33.45 3.01
343 344 8.701908 TCAGTTAGTACTTCTCCAAAGTTCTA 57.298 34.615 0.00 0.00 31.71 2.10
344 345 9.310449 TCAGTTAGTACTTCTCCAAAGTTCTAT 57.690 33.333 0.00 0.00 32.66 1.98
345 346 9.360093 CAGTTAGTACTTCTCCAAAGTTCTATG 57.640 37.037 0.00 0.51 32.66 2.23
346 347 9.091220 AGTTAGTACTTCTCCAAAGTTCTATGT 57.909 33.333 0.00 0.00 32.66 2.29
347 348 9.708092 GTTAGTACTTCTCCAAAGTTCTATGTT 57.292 33.333 0.00 0.00 32.66 2.71
349 350 8.834749 AGTACTTCTCCAAAGTTCTATGTTTC 57.165 34.615 0.00 0.00 0.00 2.78
350 351 8.429641 AGTACTTCTCCAAAGTTCTATGTTTCA 58.570 33.333 0.00 0.00 0.00 2.69
351 352 9.052759 GTACTTCTCCAAAGTTCTATGTTTCAA 57.947 33.333 0.00 0.00 0.00 2.69
352 353 7.931275 ACTTCTCCAAAGTTCTATGTTTCAAC 58.069 34.615 0.00 0.00 0.00 3.18
353 354 7.556275 ACTTCTCCAAAGTTCTATGTTTCAACA 59.444 33.333 0.00 0.00 44.06 3.33
354 355 7.873719 TCTCCAAAGTTCTATGTTTCAACAA 57.126 32.000 0.00 0.00 43.03 2.83
355 356 8.463930 TCTCCAAAGTTCTATGTTTCAACAAT 57.536 30.769 0.00 0.00 43.03 2.71
356 357 8.352201 TCTCCAAAGTTCTATGTTTCAACAATG 58.648 33.333 0.00 0.00 43.03 2.82
357 358 8.006298 TCCAAAGTTCTATGTTTCAACAATGT 57.994 30.769 0.00 0.00 43.03 2.71
358 359 8.474025 TCCAAAGTTCTATGTTTCAACAATGTT 58.526 29.630 0.00 0.00 43.03 2.71
359 360 8.542132 CCAAAGTTCTATGTTTCAACAATGTTG 58.458 33.333 19.23 19.23 43.03 3.33
360 361 7.698836 AAGTTCTATGTTTCAACAATGTTGC 57.301 32.000 20.34 8.09 43.03 4.17
361 362 7.042797 AGTTCTATGTTTCAACAATGTTGCT 57.957 32.000 20.34 5.62 43.03 3.91
362 363 7.141363 AGTTCTATGTTTCAACAATGTTGCTC 58.859 34.615 20.34 12.92 43.03 4.26
363 364 6.882610 TCTATGTTTCAACAATGTTGCTCT 57.117 33.333 20.34 6.51 43.03 4.09
364 365 6.671190 TCTATGTTTCAACAATGTTGCTCTG 58.329 36.000 20.34 7.38 43.03 3.35
365 366 4.044336 TGTTTCAACAATGTTGCTCTGG 57.956 40.909 20.34 0.00 35.67 3.86
366 367 3.698539 TGTTTCAACAATGTTGCTCTGGA 59.301 39.130 20.34 0.04 35.67 3.86
367 368 4.159321 TGTTTCAACAATGTTGCTCTGGAA 59.841 37.500 20.34 6.43 35.67 3.53
368 369 4.998671 TTCAACAATGTTGCTCTGGAAA 57.001 36.364 20.34 5.74 0.00 3.13
369 370 4.572985 TCAACAATGTTGCTCTGGAAAG 57.427 40.909 20.34 0.00 0.00 2.62
370 371 4.206375 TCAACAATGTTGCTCTGGAAAGA 58.794 39.130 20.34 0.00 0.00 2.52
371 372 4.036734 TCAACAATGTTGCTCTGGAAAGAC 59.963 41.667 20.34 0.00 0.00 3.01
372 373 2.549754 ACAATGTTGCTCTGGAAAGACG 59.450 45.455 0.00 0.00 0.00 4.18
373 374 2.807967 CAATGTTGCTCTGGAAAGACGA 59.192 45.455 0.00 0.00 0.00 4.20
374 375 2.154854 TGTTGCTCTGGAAAGACGAG 57.845 50.000 0.00 0.00 0.00 4.18
375 376 1.270305 TGTTGCTCTGGAAAGACGAGG 60.270 52.381 0.00 0.00 0.00 4.63
376 377 0.320771 TTGCTCTGGAAAGACGAGGC 60.321 55.000 0.00 0.00 0.00 4.70
377 378 1.448717 GCTCTGGAAAGACGAGGCC 60.449 63.158 0.00 0.00 0.00 5.19
378 379 1.975327 CTCTGGAAAGACGAGGCCA 59.025 57.895 5.01 0.00 0.00 5.36
379 380 0.321671 CTCTGGAAAGACGAGGCCAA 59.678 55.000 5.01 0.00 0.00 4.52
380 381 0.762418 TCTGGAAAGACGAGGCCAAA 59.238 50.000 5.01 0.00 0.00 3.28
381 382 1.160137 CTGGAAAGACGAGGCCAAAG 58.840 55.000 5.01 0.00 0.00 2.77
382 383 0.250727 TGGAAAGACGAGGCCAAAGG 60.251 55.000 5.01 0.00 0.00 3.11
396 397 3.575965 CCAAAGGCAATAGCGAACTTT 57.424 42.857 0.00 0.00 43.41 2.66
397 398 3.244976 CCAAAGGCAATAGCGAACTTTG 58.755 45.455 0.00 0.00 42.31 2.77
398 399 2.636768 AAGGCAATAGCGAACTTTGC 57.363 45.000 0.00 0.00 43.83 3.68
399 400 1.826385 AGGCAATAGCGAACTTTGCT 58.174 45.000 8.62 8.62 43.98 3.91
400 401 1.740025 AGGCAATAGCGAACTTTGCTC 59.260 47.619 6.80 0.00 43.98 4.26
401 402 1.468520 GGCAATAGCGAACTTTGCTCA 59.531 47.619 6.80 0.00 43.98 4.26
402 403 2.509870 GCAATAGCGAACTTTGCTCAC 58.490 47.619 6.80 0.00 42.85 3.51
403 404 2.762472 CAATAGCGAACTTTGCTCACG 58.238 47.619 6.80 0.00 42.85 4.35
404 405 2.363788 ATAGCGAACTTTGCTCACGA 57.636 45.000 6.80 0.00 42.85 4.35
405 406 2.363788 TAGCGAACTTTGCTCACGAT 57.636 45.000 6.80 0.00 42.85 3.73
406 407 0.792640 AGCGAACTTTGCTCACGATG 59.207 50.000 0.00 0.00 38.62 3.84
407 408 0.790207 GCGAACTTTGCTCACGATGA 59.210 50.000 0.00 0.00 0.00 2.92
408 409 1.201855 GCGAACTTTGCTCACGATGAG 60.202 52.381 9.73 9.73 46.90 2.90
417 418 3.629858 TCACGATGAGACGCTGATG 57.370 52.632 0.00 0.00 36.70 3.07
423 424 1.530293 GATGAGACGCTGATGGATTGC 59.470 52.381 0.00 0.00 0.00 3.56
489 501 6.699575 AATATAAAGGTGACATGCTTCCAC 57.300 37.500 0.00 0.00 0.00 4.02
504 516 6.417191 TGCTTCCACGTGAATAGTAAAATC 57.583 37.500 19.30 0.00 31.06 2.17
506 518 5.353123 GCTTCCACGTGAATAGTAAAATCCA 59.647 40.000 19.30 0.00 31.06 3.41
507 519 6.128117 GCTTCCACGTGAATAGTAAAATCCAA 60.128 38.462 19.30 0.00 31.06 3.53
556 568 8.782339 AAAATCTGAAATTTTGGGATAGCAAG 57.218 30.769 0.00 0.00 30.84 4.01
577 589 2.027192 GCTTGGACCACCATTCTACTCA 60.027 50.000 0.00 0.00 46.34 3.41
579 591 2.902608 TGGACCACCATTCTACTCACT 58.097 47.619 0.00 0.00 41.77 3.41
589 602 5.934625 ACCATTCTACTCACTGTGATGTTTC 59.065 40.000 11.45 0.00 0.00 2.78
596 609 2.543848 TCACTGTGATGTTTCGTGAAGC 59.456 45.455 6.36 0.00 32.26 3.86
610 623 2.034066 AAGCACCGACACCCATGG 59.966 61.111 4.14 4.14 0.00 3.66
611 624 2.463589 GAAGCACCGACACCCATGGA 62.464 60.000 15.22 0.00 0.00 3.41
612 625 2.746277 GCACCGACACCCATGGAC 60.746 66.667 15.22 0.62 0.00 4.02
613 626 2.046314 CACCGACACCCATGGACC 60.046 66.667 15.22 0.00 0.00 4.46
614 627 2.528127 ACCGACACCCATGGACCA 60.528 61.111 15.22 0.00 0.00 4.02
615 628 1.923395 ACCGACACCCATGGACCAT 60.923 57.895 15.22 0.00 0.00 3.55
616 629 1.451927 CCGACACCCATGGACCATG 60.452 63.158 25.27 25.27 41.10 3.66
631 644 5.364778 TGGACCATGGTATTCGTAATGAAG 58.635 41.667 19.80 0.00 40.65 3.02
648 661 9.490663 CGTAATGAAGAAAATACAATTCAGACC 57.509 33.333 0.00 0.00 35.31 3.85
669 769 8.687242 CAGACCTTACTATCTATCAAACAGTGA 58.313 37.037 0.00 0.00 41.67 3.41
729 830 6.710744 CCCCATATTACTACAGGTGTCATTTC 59.289 42.308 0.00 0.00 0.00 2.17
733 834 9.823647 CATATTACTACAGGTGTCATTTCTTCT 57.176 33.333 0.00 0.00 0.00 2.85
745 846 7.380602 GGTGTCATTTCTTCTTGAAACTTCATG 59.619 37.037 0.00 0.00 46.08 3.07
761 862 1.958579 TCATGCGCTAGTATACCGGTT 59.041 47.619 15.04 3.05 0.00 4.44
768 869 4.671250 GCGCTAGTATACCGGTTGACTATC 60.671 50.000 21.94 18.21 0.00 2.08
779 880 6.827727 ACCGGTTGACTATCTATGCTAAAAT 58.172 36.000 0.00 0.00 0.00 1.82
840 942 6.194235 AGATTTACAATTCATAAGGGGTGCA 58.806 36.000 0.00 0.00 0.00 4.57
843 945 3.711863 ACAATTCATAAGGGGTGCATGT 58.288 40.909 0.00 0.00 0.00 3.21
845 947 3.668141 ATTCATAAGGGGTGCATGTGA 57.332 42.857 0.00 0.00 0.00 3.58
858 960 3.922240 GTGCATGTGAAACCATGTTCATC 59.078 43.478 2.44 0.00 43.33 2.92
863 965 6.183360 GCATGTGAAACCATGTTCATCAAATC 60.183 38.462 2.44 0.00 43.33 2.17
866 968 4.522405 TGAAACCATGTTCATCAAATCCGT 59.478 37.500 0.00 0.00 32.56 4.69
937 1047 5.676532 TGAAAGAGAAAAATAAACCGCGA 57.323 34.783 8.23 0.00 0.00 5.87
938 1048 6.062434 TGAAAGAGAAAAATAAACCGCGAA 57.938 33.333 8.23 0.00 0.00 4.70
939 1049 6.140110 TGAAAGAGAAAAATAAACCGCGAAG 58.860 36.000 8.23 0.00 0.00 3.79
940 1050 5.934935 AAGAGAAAAATAAACCGCGAAGA 57.065 34.783 8.23 0.00 0.00 2.87
941 1051 6.496338 AAGAGAAAAATAAACCGCGAAGAT 57.504 33.333 8.23 0.00 0.00 2.40
942 1052 7.605410 AAGAGAAAAATAAACCGCGAAGATA 57.395 32.000 8.23 0.00 0.00 1.98
943 1053 7.001695 AGAGAAAAATAAACCGCGAAGATAC 57.998 36.000 8.23 0.00 0.00 2.24
944 1054 6.592607 AGAGAAAAATAAACCGCGAAGATACA 59.407 34.615 8.23 0.00 0.00 2.29
945 1055 6.772078 AGAAAAATAAACCGCGAAGATACAG 58.228 36.000 8.23 0.00 0.00 2.74
946 1056 5.479716 AAAATAAACCGCGAAGATACAGG 57.520 39.130 8.23 0.00 0.00 4.00
947 1057 2.589798 TAAACCGCGAAGATACAGGG 57.410 50.000 8.23 0.00 0.00 4.45
948 1058 0.611714 AAACCGCGAAGATACAGGGT 59.388 50.000 8.23 0.00 0.00 4.34
949 1059 1.477553 AACCGCGAAGATACAGGGTA 58.522 50.000 8.23 0.00 0.00 3.69
950 1060 0.743097 ACCGCGAAGATACAGGGTAC 59.257 55.000 8.23 0.00 0.00 3.34
1008 1120 3.577313 GCCCGAAAGATGCCGCTC 61.577 66.667 0.00 0.00 0.00 5.03
1091 1206 2.680352 TCTCCTTCGCGGCCTCTT 60.680 61.111 6.13 0.00 0.00 2.85
1092 1207 2.266055 CTCCTTCGCGGCCTCTTT 59.734 61.111 6.13 0.00 0.00 2.52
1719 1857 1.003580 TGGGAAGACTGATTGGCTGAC 59.996 52.381 0.00 0.00 31.76 3.51
1720 1858 1.280421 GGGAAGACTGATTGGCTGACT 59.720 52.381 0.00 0.00 31.76 3.41
1721 1859 2.354259 GGAAGACTGATTGGCTGACTG 58.646 52.381 0.00 0.00 31.76 3.51
1722 1860 2.027745 GGAAGACTGATTGGCTGACTGA 60.028 50.000 0.00 0.00 31.76 3.41
1723 1861 3.370315 GGAAGACTGATTGGCTGACTGAT 60.370 47.826 0.00 0.00 31.76 2.90
1724 1862 3.996921 AGACTGATTGGCTGACTGATT 57.003 42.857 0.00 0.00 28.85 2.57
1725 1863 5.423015 GAAGACTGATTGGCTGACTGATTA 58.577 41.667 0.00 0.00 31.76 1.75
1726 1864 4.764172 AGACTGATTGGCTGACTGATTAC 58.236 43.478 0.00 0.00 28.85 1.89
1727 1865 4.469227 AGACTGATTGGCTGACTGATTACT 59.531 41.667 0.00 0.00 28.85 2.24
1728 1866 4.764172 ACTGATTGGCTGACTGATTACTC 58.236 43.478 0.00 0.00 0.00 2.59
1729 1867 4.223700 ACTGATTGGCTGACTGATTACTCA 59.776 41.667 0.00 0.00 0.00 3.41
1748 1886 1.737735 GCCATTTTGGTGCTTCGCC 60.738 57.895 0.00 0.00 40.46 5.54
1752 1890 1.805428 ATTTTGGTGCTTCGCCGCTT 61.805 50.000 0.00 0.00 36.72 4.68
1983 2142 6.656270 ACATGAGAACTATTTTGTGATGCTGA 59.344 34.615 0.00 0.00 0.00 4.26
1984 2143 7.338703 ACATGAGAACTATTTTGTGATGCTGAT 59.661 33.333 0.00 0.00 0.00 2.90
1985 2144 7.080353 TGAGAACTATTTTGTGATGCTGATG 57.920 36.000 0.00 0.00 0.00 3.07
1986 2145 5.888105 AGAACTATTTTGTGATGCTGATGC 58.112 37.500 0.00 0.00 40.20 3.91
1987 2146 4.644103 ACTATTTTGTGATGCTGATGCC 57.356 40.909 0.00 0.00 38.71 4.40
1988 2147 4.275810 ACTATTTTGTGATGCTGATGCCT 58.724 39.130 0.00 0.00 38.71 4.75
2064 2223 7.900782 TGCTGTAGAAGTTAGGTTTGTATTC 57.099 36.000 0.00 0.00 0.00 1.75
2065 2224 7.446769 TGCTGTAGAAGTTAGGTTTGTATTCA 58.553 34.615 0.00 0.00 0.00 2.57
2091 2250 7.865706 ATAACTTAGATTCGTGAAATTGGCT 57.134 32.000 0.00 0.00 0.00 4.75
2094 2253 5.705441 ACTTAGATTCGTGAAATTGGCTGAA 59.295 36.000 0.00 0.00 0.00 3.02
2150 2309 9.521841 TTAATCTCGTATCCACTCTATGAGAAT 57.478 33.333 6.40 2.15 41.91 2.40
2199 2358 8.965986 TTCGTAATGAGATATGGTTTATCGAG 57.034 34.615 0.00 0.00 0.00 4.04
2328 2487 7.201705 GCAAAGTGAACACCTAGTTAAGAGTTT 60.202 37.037 1.11 0.00 41.51 2.66
2358 2517 3.118775 TGCATTAGCTGTCCGTACAATCT 60.119 43.478 0.00 0.00 42.74 2.40
2376 2535 7.086685 ACAATCTCCCTTTTGGTTTACTAGA 57.913 36.000 0.00 0.00 38.10 2.43
2378 2537 8.832735 ACAATCTCCCTTTTGGTTTACTAGATA 58.167 33.333 0.00 0.00 38.10 1.98
2405 2564 4.201851 CCATAATCCTCGCTGAAACACTTG 60.202 45.833 0.00 0.00 0.00 3.16
2407 2566 1.865865 TCCTCGCTGAAACACTTGTC 58.134 50.000 0.00 0.00 0.00 3.18
2422 2581 2.301583 ACTTGTCCTGCCTCTTCTCTTC 59.698 50.000 0.00 0.00 0.00 2.87
2426 2585 3.392616 TGTCCTGCCTCTTCTCTTCTTTT 59.607 43.478 0.00 0.00 0.00 2.27
2440 2600 5.896678 TCTCTTCTTTTGGGGATTTTGACAA 59.103 36.000 0.00 0.00 0.00 3.18
2444 2604 5.208121 TCTTTTGGGGATTTTGACAAGACT 58.792 37.500 0.00 0.00 0.00 3.24
2445 2605 5.660864 TCTTTTGGGGATTTTGACAAGACTT 59.339 36.000 0.00 0.00 0.00 3.01
2446 2606 4.935352 TTGGGGATTTTGACAAGACTTG 57.065 40.909 13.77 13.77 0.00 3.16
2447 2607 3.230134 TGGGGATTTTGACAAGACTTGG 58.770 45.455 19.16 2.01 34.12 3.61
2448 2608 3.117322 TGGGGATTTTGACAAGACTTGGA 60.117 43.478 19.16 2.77 34.12 3.53
2449 2609 4.089361 GGGGATTTTGACAAGACTTGGAT 58.911 43.478 19.16 0.00 34.12 3.41
2450 2610 4.158579 GGGGATTTTGACAAGACTTGGATC 59.841 45.833 19.16 9.18 34.12 3.36
2451 2611 4.766891 GGGATTTTGACAAGACTTGGATCA 59.233 41.667 19.16 11.59 34.12 2.92
2452 2612 5.105997 GGGATTTTGACAAGACTTGGATCAG 60.106 44.000 19.16 0.00 34.12 2.90
2453 2613 5.474876 GGATTTTGACAAGACTTGGATCAGT 59.525 40.000 19.16 5.46 34.12 3.41
2454 2614 6.348868 GGATTTTGACAAGACTTGGATCAGTC 60.349 42.308 19.16 12.24 43.26 3.51
2481 2641 4.137543 ACACATCTTGTTCTGGGTTCTTC 58.862 43.478 0.00 0.00 33.09 2.87
2546 2706 3.367703 CCATTGCACTCTCACAATTTCCC 60.368 47.826 0.00 0.00 34.32 3.97
2653 2813 0.034059 AAGGACTGACAGCACCGAAG 59.966 55.000 1.25 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.221100 GCTTTCTTTTGTTTTTCTTTCTTCGTT 58.779 29.630 0.00 0.00 0.00 3.85
31 32 7.148639 GGCTTTCTTTTGTTTTTCTTTCTTCGT 60.149 33.333 0.00 0.00 0.00 3.85
32 33 7.148656 TGGCTTTCTTTTGTTTTTCTTTCTTCG 60.149 33.333 0.00 0.00 0.00 3.79
33 34 8.028540 TGGCTTTCTTTTGTTTTTCTTTCTTC 57.971 30.769 0.00 0.00 0.00 2.87
34 35 7.977789 TGGCTTTCTTTTGTTTTTCTTTCTT 57.022 28.000 0.00 0.00 0.00 2.52
35 36 7.977789 TTGGCTTTCTTTTGTTTTTCTTTCT 57.022 28.000 0.00 0.00 0.00 2.52
36 37 8.450180 TCATTGGCTTTCTTTTGTTTTTCTTTC 58.550 29.630 0.00 0.00 0.00 2.62
37 38 8.334263 TCATTGGCTTTCTTTTGTTTTTCTTT 57.666 26.923 0.00 0.00 0.00 2.52
38 39 7.920160 TCATTGGCTTTCTTTTGTTTTTCTT 57.080 28.000 0.00 0.00 0.00 2.52
39 40 7.920160 TTCATTGGCTTTCTTTTGTTTTTCT 57.080 28.000 0.00 0.00 0.00 2.52
40 41 8.962857 TTTTCATTGGCTTTCTTTTGTTTTTC 57.037 26.923 0.00 0.00 0.00 2.29
41 42 8.791675 TCTTTTCATTGGCTTTCTTTTGTTTTT 58.208 25.926 0.00 0.00 0.00 1.94
42 43 8.334263 TCTTTTCATTGGCTTTCTTTTGTTTT 57.666 26.923 0.00 0.00 0.00 2.43
43 44 7.920160 TCTTTTCATTGGCTTTCTTTTGTTT 57.080 28.000 0.00 0.00 0.00 2.83
44 45 7.920160 TTCTTTTCATTGGCTTTCTTTTGTT 57.080 28.000 0.00 0.00 0.00 2.83
45 46 7.920160 TTTCTTTTCATTGGCTTTCTTTTGT 57.080 28.000 0.00 0.00 0.00 2.83
68 69 7.835634 TTTTCCTTCGTTATGCTTTGTTTTT 57.164 28.000 0.00 0.00 0.00 1.94
69 70 7.835634 TTTTTCCTTCGTTATGCTTTGTTTT 57.164 28.000 0.00 0.00 0.00 2.43
70 71 9.535878 TTATTTTTCCTTCGTTATGCTTTGTTT 57.464 25.926 0.00 0.00 0.00 2.83
71 72 9.535878 TTTATTTTTCCTTCGTTATGCTTTGTT 57.464 25.926 0.00 0.00 0.00 2.83
72 73 9.191995 CTTTATTTTTCCTTCGTTATGCTTTGT 57.808 29.630 0.00 0.00 0.00 2.83
73 74 9.405587 TCTTTATTTTTCCTTCGTTATGCTTTG 57.594 29.630 0.00 0.00 0.00 2.77
137 138 6.928492 TCCGCTTGATTTGCTTTATTCTTTTT 59.072 30.769 0.00 0.00 0.00 1.94
138 139 6.454795 TCCGCTTGATTTGCTTTATTCTTTT 58.545 32.000 0.00 0.00 0.00 2.27
139 140 6.024552 TCCGCTTGATTTGCTTTATTCTTT 57.975 33.333 0.00 0.00 0.00 2.52
140 141 5.643379 TCCGCTTGATTTGCTTTATTCTT 57.357 34.783 0.00 0.00 0.00 2.52
141 142 5.841957 ATCCGCTTGATTTGCTTTATTCT 57.158 34.783 0.00 0.00 0.00 2.40
144 145 9.672673 ACTATATATCCGCTTGATTTGCTTTAT 57.327 29.630 0.00 0.00 34.76 1.40
145 146 8.935844 CACTATATATCCGCTTGATTTGCTTTA 58.064 33.333 0.00 0.00 34.76 1.85
146 147 7.661437 TCACTATATATCCGCTTGATTTGCTTT 59.339 33.333 0.00 0.00 34.76 3.51
147 148 7.161404 TCACTATATATCCGCTTGATTTGCTT 58.839 34.615 0.00 0.00 34.76 3.91
148 149 6.701340 TCACTATATATCCGCTTGATTTGCT 58.299 36.000 0.00 0.00 34.76 3.91
149 150 6.968131 TCACTATATATCCGCTTGATTTGC 57.032 37.500 0.00 0.00 34.76 3.68
150 151 8.310406 TGTTCACTATATATCCGCTTGATTTG 57.690 34.615 0.00 0.00 34.76 2.32
151 152 8.902540 TTGTTCACTATATATCCGCTTGATTT 57.097 30.769 0.00 0.00 34.76 2.17
153 154 9.809096 CTATTGTTCACTATATATCCGCTTGAT 57.191 33.333 0.00 0.00 37.49 2.57
154 155 8.803235 ACTATTGTTCACTATATATCCGCTTGA 58.197 33.333 0.00 0.00 0.00 3.02
155 156 8.864024 CACTATTGTTCACTATATATCCGCTTG 58.136 37.037 0.00 0.00 0.00 4.01
156 157 8.035394 CCACTATTGTTCACTATATATCCGCTT 58.965 37.037 0.00 0.00 0.00 4.68
157 158 7.363880 CCCACTATTGTTCACTATATATCCGCT 60.364 40.741 0.00 0.00 0.00 5.52
158 159 6.757010 CCCACTATTGTTCACTATATATCCGC 59.243 42.308 0.00 0.00 0.00 5.54
159 160 6.757010 GCCCACTATTGTTCACTATATATCCG 59.243 42.308 0.00 0.00 0.00 4.18
160 161 7.048512 GGCCCACTATTGTTCACTATATATCC 58.951 42.308 0.00 0.00 0.00 2.59
161 162 7.620880 TGGCCCACTATTGTTCACTATATATC 58.379 38.462 0.00 0.00 0.00 1.63
162 163 7.568128 TGGCCCACTATTGTTCACTATATAT 57.432 36.000 0.00 0.00 0.00 0.86
163 164 7.394016 CATGGCCCACTATTGTTCACTATATA 58.606 38.462 0.00 0.00 0.00 0.86
164 165 5.904984 TGGCCCACTATTGTTCACTATAT 57.095 39.130 0.00 0.00 0.00 0.86
165 166 5.620206 CATGGCCCACTATTGTTCACTATA 58.380 41.667 0.00 0.00 0.00 1.31
166 167 4.464008 CATGGCCCACTATTGTTCACTAT 58.536 43.478 0.00 0.00 0.00 2.12
167 168 3.884895 CATGGCCCACTATTGTTCACTA 58.115 45.455 0.00 0.00 0.00 2.74
168 169 2.726821 CATGGCCCACTATTGTTCACT 58.273 47.619 0.00 0.00 0.00 3.41
169 170 1.134946 GCATGGCCCACTATTGTTCAC 59.865 52.381 0.00 0.00 0.00 3.18
170 171 1.473258 GCATGGCCCACTATTGTTCA 58.527 50.000 0.00 0.00 0.00 3.18
171 172 0.746659 GGCATGGCCCACTATTGTTC 59.253 55.000 8.35 0.00 44.06 3.18
172 173 2.900547 GGCATGGCCCACTATTGTT 58.099 52.632 8.35 0.00 44.06 2.83
173 174 4.684623 GGCATGGCCCACTATTGT 57.315 55.556 8.35 0.00 44.06 2.71
183 184 0.743097 GGAGAGTGAATTGGCATGGC 59.257 55.000 13.29 13.29 0.00 4.40
184 185 1.396653 GGGAGAGTGAATTGGCATGG 58.603 55.000 0.00 0.00 0.00 3.66
185 186 1.019673 CGGGAGAGTGAATTGGCATG 58.980 55.000 0.00 0.00 0.00 4.06
186 187 0.620556 ACGGGAGAGTGAATTGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
187 188 1.207089 CTACGGGAGAGTGAATTGGCA 59.793 52.381 0.00 0.00 0.00 4.92
188 189 1.473434 CCTACGGGAGAGTGAATTGGC 60.473 57.143 0.00 0.00 33.58 4.52
189 190 1.473434 GCCTACGGGAGAGTGAATTGG 60.473 57.143 0.00 0.00 33.58 3.16
190 191 1.802880 CGCCTACGGGAGAGTGAATTG 60.803 57.143 0.00 0.00 34.16 2.32
191 192 0.460311 CGCCTACGGGAGAGTGAATT 59.540 55.000 0.00 0.00 34.16 2.17
192 193 0.395311 TCGCCTACGGGAGAGTGAAT 60.395 55.000 0.00 0.00 36.52 2.57
193 194 0.395311 ATCGCCTACGGGAGAGTGAA 60.395 55.000 0.00 0.00 44.23 3.18
194 195 0.395311 AATCGCCTACGGGAGAGTGA 60.395 55.000 0.00 0.00 44.23 3.41
195 196 0.030908 GAATCGCCTACGGGAGAGTG 59.969 60.000 0.00 0.00 44.23 3.51
196 197 1.108132 GGAATCGCCTACGGGAGAGT 61.108 60.000 0.00 0.00 44.23 3.24
197 198 1.660917 GGAATCGCCTACGGGAGAG 59.339 63.158 0.00 0.00 44.23 3.20
198 199 3.851955 GGAATCGCCTACGGGAGA 58.148 61.111 0.00 0.00 45.04 3.71
212 213 8.591072 CCCATACCGATTTCTACTTATTAGGAA 58.409 37.037 0.00 0.00 29.12 3.36
213 214 7.951806 TCCCATACCGATTTCTACTTATTAGGA 59.048 37.037 0.00 0.00 0.00 2.94
214 215 8.130671 TCCCATACCGATTTCTACTTATTAGG 57.869 38.462 0.00 0.00 0.00 2.69
215 216 9.021807 TCTCCCATACCGATTTCTACTTATTAG 57.978 37.037 0.00 0.00 0.00 1.73
216 217 8.945195 TCTCCCATACCGATTTCTACTTATTA 57.055 34.615 0.00 0.00 0.00 0.98
217 218 7.728981 TCTCTCCCATACCGATTTCTACTTATT 59.271 37.037 0.00 0.00 0.00 1.40
218 219 7.177041 GTCTCTCCCATACCGATTTCTACTTAT 59.823 40.741 0.00 0.00 0.00 1.73
219 220 6.489361 GTCTCTCCCATACCGATTTCTACTTA 59.511 42.308 0.00 0.00 0.00 2.24
220 221 5.302313 GTCTCTCCCATACCGATTTCTACTT 59.698 44.000 0.00 0.00 0.00 2.24
221 222 4.828387 GTCTCTCCCATACCGATTTCTACT 59.172 45.833 0.00 0.00 0.00 2.57
222 223 4.583489 TGTCTCTCCCATACCGATTTCTAC 59.417 45.833 0.00 0.00 0.00 2.59
223 224 4.800023 TGTCTCTCCCATACCGATTTCTA 58.200 43.478 0.00 0.00 0.00 2.10
224 225 3.643237 TGTCTCTCCCATACCGATTTCT 58.357 45.455 0.00 0.00 0.00 2.52
225 226 4.608948 ATGTCTCTCCCATACCGATTTC 57.391 45.455 0.00 0.00 0.00 2.17
226 227 4.021016 GCTATGTCTCTCCCATACCGATTT 60.021 45.833 0.00 0.00 0.00 2.17
227 228 3.511934 GCTATGTCTCTCCCATACCGATT 59.488 47.826 0.00 0.00 0.00 3.34
228 229 3.093057 GCTATGTCTCTCCCATACCGAT 58.907 50.000 0.00 0.00 0.00 4.18
229 230 2.515854 GCTATGTCTCTCCCATACCGA 58.484 52.381 0.00 0.00 0.00 4.69
230 231 1.546476 GGCTATGTCTCTCCCATACCG 59.454 57.143 0.00 0.00 0.00 4.02
231 232 1.903183 GGGCTATGTCTCTCCCATACC 59.097 57.143 0.00 0.00 38.62 2.73
232 233 2.829120 GAGGGCTATGTCTCTCCCATAC 59.171 54.545 0.00 0.00 41.22 2.39
233 234 2.555448 CGAGGGCTATGTCTCTCCCATA 60.555 54.545 0.00 0.00 41.22 2.74
234 235 1.825242 CGAGGGCTATGTCTCTCCCAT 60.825 57.143 0.00 0.00 41.22 4.00
235 236 0.468214 CGAGGGCTATGTCTCTCCCA 60.468 60.000 0.00 0.00 41.22 4.37
236 237 1.811645 GCGAGGGCTATGTCTCTCCC 61.812 65.000 0.00 0.00 39.05 4.30
237 238 1.663173 GCGAGGGCTATGTCTCTCC 59.337 63.158 0.00 0.00 35.83 3.71
238 239 1.284408 CGCGAGGGCTATGTCTCTC 59.716 63.158 0.00 0.00 36.88 3.20
239 240 3.437867 CGCGAGGGCTATGTCTCT 58.562 61.111 0.00 0.00 36.88 3.10
251 252 2.954868 GCCGTGTATCACCGCGAG 60.955 66.667 8.23 0.00 40.64 5.03
252 253 4.501714 GGCCGTGTATCACCGCGA 62.502 66.667 8.23 0.00 38.93 5.87
253 254 2.416244 ATAGGCCGTGTATCACCGCG 62.416 60.000 0.00 0.00 38.93 6.46
254 255 0.666577 GATAGGCCGTGTATCACCGC 60.667 60.000 0.00 5.05 37.74 5.68
255 256 0.959553 AGATAGGCCGTGTATCACCG 59.040 55.000 11.84 0.00 30.42 4.94
256 257 3.418995 TCTAGATAGGCCGTGTATCACC 58.581 50.000 11.84 0.00 30.42 4.02
257 258 4.700692 TGATCTAGATAGGCCGTGTATCAC 59.299 45.833 4.89 0.00 30.42 3.06
258 259 4.700692 GTGATCTAGATAGGCCGTGTATCA 59.299 45.833 4.89 7.03 30.42 2.15
259 260 4.096682 GGTGATCTAGATAGGCCGTGTATC 59.903 50.000 4.89 0.00 0.00 2.24
260 261 4.017808 GGTGATCTAGATAGGCCGTGTAT 58.982 47.826 4.89 0.00 0.00 2.29
261 262 3.181437 TGGTGATCTAGATAGGCCGTGTA 60.181 47.826 4.89 0.00 0.00 2.90
262 263 2.240279 GGTGATCTAGATAGGCCGTGT 58.760 52.381 4.89 0.00 0.00 4.49
263 264 2.239400 TGGTGATCTAGATAGGCCGTG 58.761 52.381 4.89 0.00 0.00 4.94
264 265 2.677542 TGGTGATCTAGATAGGCCGT 57.322 50.000 4.89 0.00 0.00 5.68
265 266 2.098280 CGATGGTGATCTAGATAGGCCG 59.902 54.545 4.89 1.72 0.00 6.13
266 267 3.093057 ACGATGGTGATCTAGATAGGCC 58.907 50.000 4.89 8.74 0.00 5.19
267 268 4.489810 CAACGATGGTGATCTAGATAGGC 58.510 47.826 4.89 0.00 0.00 3.93
268 269 5.065704 CCAACGATGGTGATCTAGATAGG 57.934 47.826 4.89 0.00 42.18 2.57
282 283 1.742761 ACCAGAAGATGCCAACGATG 58.257 50.000 0.00 0.00 0.00 3.84
283 284 2.496899 AACCAGAAGATGCCAACGAT 57.503 45.000 0.00 0.00 0.00 3.73
284 285 2.270352 AAACCAGAAGATGCCAACGA 57.730 45.000 0.00 0.00 0.00 3.85
285 286 5.527214 TGATATAAACCAGAAGATGCCAACG 59.473 40.000 0.00 0.00 0.00 4.10
286 287 6.942532 TGATATAAACCAGAAGATGCCAAC 57.057 37.500 0.00 0.00 0.00 3.77
287 288 7.560991 ACAATGATATAAACCAGAAGATGCCAA 59.439 33.333 0.00 0.00 0.00 4.52
288 289 7.062322 ACAATGATATAAACCAGAAGATGCCA 58.938 34.615 0.00 0.00 0.00 4.92
289 290 7.446625 AGACAATGATATAAACCAGAAGATGCC 59.553 37.037 0.00 0.00 0.00 4.40
290 291 8.388484 AGACAATGATATAAACCAGAAGATGC 57.612 34.615 0.00 0.00 0.00 3.91
296 297 9.739276 ACTGAAAAGACAATGATATAAACCAGA 57.261 29.630 0.00 0.00 0.00 3.86
307 308 9.477484 GAGAAGTACTAACTGAAAAGACAATGA 57.523 33.333 0.00 0.00 35.62 2.57
308 309 8.713271 GGAGAAGTACTAACTGAAAAGACAATG 58.287 37.037 0.00 0.00 35.62 2.82
309 310 8.429641 TGGAGAAGTACTAACTGAAAAGACAAT 58.570 33.333 0.00 0.00 35.62 2.71
310 311 7.788026 TGGAGAAGTACTAACTGAAAAGACAA 58.212 34.615 0.00 0.00 35.62 3.18
311 312 7.356089 TGGAGAAGTACTAACTGAAAAGACA 57.644 36.000 0.00 0.00 35.62 3.41
312 313 8.658499 TTTGGAGAAGTACTAACTGAAAAGAC 57.342 34.615 0.00 0.00 35.62 3.01
313 314 8.483758 ACTTTGGAGAAGTACTAACTGAAAAGA 58.516 33.333 22.96 5.22 35.62 2.52
314 315 8.664211 ACTTTGGAGAAGTACTAACTGAAAAG 57.336 34.615 19.09 19.09 35.62 2.27
315 316 9.106070 GAACTTTGGAGAAGTACTAACTGAAAA 57.894 33.333 0.00 2.14 35.62 2.29
316 317 8.483758 AGAACTTTGGAGAAGTACTAACTGAAA 58.516 33.333 0.00 0.88 35.62 2.69
317 318 8.019656 AGAACTTTGGAGAAGTACTAACTGAA 57.980 34.615 0.00 0.00 35.62 3.02
318 319 7.598759 AGAACTTTGGAGAAGTACTAACTGA 57.401 36.000 0.00 0.00 35.62 3.41
319 320 9.360093 CATAGAACTTTGGAGAAGTACTAACTG 57.640 37.037 0.00 0.00 35.62 3.16
320 321 9.091220 ACATAGAACTTTGGAGAAGTACTAACT 57.909 33.333 0.00 0.00 37.65 2.24
321 322 9.708092 AACATAGAACTTTGGAGAAGTACTAAC 57.292 33.333 0.00 0.00 0.00 2.34
323 324 9.924650 GAAACATAGAACTTTGGAGAAGTACTA 57.075 33.333 0.00 0.00 0.00 1.82
324 325 8.429641 TGAAACATAGAACTTTGGAGAAGTACT 58.570 33.333 0.00 0.00 0.00 2.73
325 326 8.603242 TGAAACATAGAACTTTGGAGAAGTAC 57.397 34.615 0.00 0.00 0.00 2.73
326 327 9.052759 GTTGAAACATAGAACTTTGGAGAAGTA 57.947 33.333 0.00 0.00 0.00 2.24
327 328 7.556275 TGTTGAAACATAGAACTTTGGAGAAGT 59.444 33.333 0.00 0.00 33.17 3.01
328 329 7.930217 TGTTGAAACATAGAACTTTGGAGAAG 58.070 34.615 0.00 0.00 33.17 2.85
329 330 7.873719 TGTTGAAACATAGAACTTTGGAGAA 57.126 32.000 0.00 0.00 33.17 2.87
330 331 7.873719 TTGTTGAAACATAGAACTTTGGAGA 57.126 32.000 0.00 0.00 38.95 3.71
331 332 8.137437 ACATTGTTGAAACATAGAACTTTGGAG 58.863 33.333 0.00 0.00 38.95 3.86
332 333 8.006298 ACATTGTTGAAACATAGAACTTTGGA 57.994 30.769 0.00 0.00 38.95 3.53
333 334 8.542132 CAACATTGTTGAAACATAGAACTTTGG 58.458 33.333 22.28 0.00 38.95 3.28
334 335 8.057742 GCAACATTGTTGAAACATAGAACTTTG 58.942 33.333 29.04 1.77 38.95 2.77
335 336 7.981225 AGCAACATTGTTGAAACATAGAACTTT 59.019 29.630 29.04 0.00 38.95 2.66
336 337 7.491682 AGCAACATTGTTGAAACATAGAACTT 58.508 30.769 29.04 0.16 38.95 2.66
337 338 7.013655 AGAGCAACATTGTTGAAACATAGAACT 59.986 33.333 29.04 14.20 38.95 3.01
338 339 7.113965 CAGAGCAACATTGTTGAAACATAGAAC 59.886 37.037 29.04 10.19 38.95 3.01
339 340 7.140705 CAGAGCAACATTGTTGAAACATAGAA 58.859 34.615 29.04 0.00 38.95 2.10
340 341 6.294120 CCAGAGCAACATTGTTGAAACATAGA 60.294 38.462 29.04 0.00 38.95 1.98
341 342 5.860182 CCAGAGCAACATTGTTGAAACATAG 59.140 40.000 29.04 12.94 38.95 2.23
342 343 5.534278 TCCAGAGCAACATTGTTGAAACATA 59.466 36.000 29.04 9.97 38.95 2.29
343 344 4.341806 TCCAGAGCAACATTGTTGAAACAT 59.658 37.500 29.04 11.30 38.95 2.71
344 345 3.698539 TCCAGAGCAACATTGTTGAAACA 59.301 39.130 29.04 7.71 37.08 2.83
345 346 4.305989 TCCAGAGCAACATTGTTGAAAC 57.694 40.909 29.04 18.73 0.00 2.78
346 347 4.998671 TTCCAGAGCAACATTGTTGAAA 57.001 36.364 29.04 11.85 0.00 2.69
347 348 4.644234 TCTTTCCAGAGCAACATTGTTGAA 59.356 37.500 29.04 12.95 0.00 2.69
348 349 4.036734 GTCTTTCCAGAGCAACATTGTTGA 59.963 41.667 29.04 7.83 0.00 3.18
349 350 4.293415 GTCTTTCCAGAGCAACATTGTTG 58.707 43.478 22.40 22.40 0.00 3.33
350 351 3.003689 CGTCTTTCCAGAGCAACATTGTT 59.996 43.478 0.00 0.00 0.00 2.83
351 352 2.549754 CGTCTTTCCAGAGCAACATTGT 59.450 45.455 0.00 0.00 0.00 2.71
352 353 2.807967 TCGTCTTTCCAGAGCAACATTG 59.192 45.455 0.00 0.00 0.00 2.82
353 354 3.070018 CTCGTCTTTCCAGAGCAACATT 58.930 45.455 0.00 0.00 0.00 2.71
354 355 2.613977 CCTCGTCTTTCCAGAGCAACAT 60.614 50.000 0.00 0.00 0.00 2.71
355 356 1.270305 CCTCGTCTTTCCAGAGCAACA 60.270 52.381 0.00 0.00 0.00 3.33
356 357 1.433534 CCTCGTCTTTCCAGAGCAAC 58.566 55.000 0.00 0.00 0.00 4.17
357 358 0.320771 GCCTCGTCTTTCCAGAGCAA 60.321 55.000 0.00 0.00 0.00 3.91
358 359 1.293498 GCCTCGTCTTTCCAGAGCA 59.707 57.895 0.00 0.00 0.00 4.26
359 360 1.448717 GGCCTCGTCTTTCCAGAGC 60.449 63.158 0.00 0.00 0.00 4.09
360 361 0.321671 TTGGCCTCGTCTTTCCAGAG 59.678 55.000 3.32 0.00 0.00 3.35
361 362 0.762418 TTTGGCCTCGTCTTTCCAGA 59.238 50.000 3.32 0.00 0.00 3.86
362 363 1.160137 CTTTGGCCTCGTCTTTCCAG 58.840 55.000 3.32 0.00 0.00 3.86
363 364 0.250727 CCTTTGGCCTCGTCTTTCCA 60.251 55.000 3.32 0.00 0.00 3.53
364 365 1.587043 GCCTTTGGCCTCGTCTTTCC 61.587 60.000 3.32 0.00 44.06 3.13
365 366 1.876664 GCCTTTGGCCTCGTCTTTC 59.123 57.895 3.32 0.00 44.06 2.62
366 367 4.081050 GCCTTTGGCCTCGTCTTT 57.919 55.556 3.32 0.00 44.06 2.52
376 377 3.244976 CAAAGTTCGCTATTGCCTTTGG 58.755 45.455 15.98 4.30 39.76 3.28
377 378 2.663119 GCAAAGTTCGCTATTGCCTTTG 59.337 45.455 18.04 18.04 42.92 2.77
378 379 2.946564 GCAAAGTTCGCTATTGCCTTT 58.053 42.857 0.00 0.00 42.70 3.11
379 380 2.636768 GCAAAGTTCGCTATTGCCTT 57.363 45.000 0.00 0.00 42.70 4.35
383 384 2.411748 TCGTGAGCAAAGTTCGCTATTG 59.588 45.455 0.00 0.00 40.63 1.90
384 385 2.683968 TCGTGAGCAAAGTTCGCTATT 58.316 42.857 0.00 0.00 40.63 1.73
385 386 2.363788 TCGTGAGCAAAGTTCGCTAT 57.636 45.000 0.00 0.00 40.63 2.97
386 387 1.992667 CATCGTGAGCAAAGTTCGCTA 59.007 47.619 0.00 0.00 40.63 4.26
387 388 0.792640 CATCGTGAGCAAAGTTCGCT 59.207 50.000 0.00 0.00 44.10 4.93
388 389 0.790207 TCATCGTGAGCAAAGTTCGC 59.210 50.000 0.00 0.00 0.00 4.70
389 390 2.091277 GTCTCATCGTGAGCAAAGTTCG 59.909 50.000 9.34 0.00 43.95 3.95
390 391 2.091277 CGTCTCATCGTGAGCAAAGTTC 59.909 50.000 9.34 0.00 43.95 3.01
391 392 2.061773 CGTCTCATCGTGAGCAAAGTT 58.938 47.619 9.34 0.00 43.95 2.66
392 393 1.702886 CGTCTCATCGTGAGCAAAGT 58.297 50.000 9.34 0.00 43.95 2.66
393 394 0.368227 GCGTCTCATCGTGAGCAAAG 59.632 55.000 9.34 3.71 43.95 2.77
394 395 0.038251 AGCGTCTCATCGTGAGCAAA 60.038 50.000 9.34 0.00 43.95 3.68
395 396 0.733909 CAGCGTCTCATCGTGAGCAA 60.734 55.000 9.34 0.00 43.95 3.91
396 397 1.153958 CAGCGTCTCATCGTGAGCA 60.154 57.895 9.34 0.00 43.95 4.26
397 398 0.248825 ATCAGCGTCTCATCGTGAGC 60.249 55.000 9.34 5.32 43.95 4.26
398 399 1.475045 CATCAGCGTCTCATCGTGAG 58.525 55.000 8.24 8.24 45.59 3.51
399 400 0.101219 CCATCAGCGTCTCATCGTGA 59.899 55.000 0.00 0.00 0.00 4.35
400 401 0.101219 TCCATCAGCGTCTCATCGTG 59.899 55.000 0.00 0.00 0.00 4.35
401 402 1.035923 ATCCATCAGCGTCTCATCGT 58.964 50.000 0.00 0.00 0.00 3.73
402 403 1.791204 CAATCCATCAGCGTCTCATCG 59.209 52.381 0.00 0.00 0.00 3.84
403 404 1.530293 GCAATCCATCAGCGTCTCATC 59.470 52.381 0.00 0.00 0.00 2.92
404 405 1.140452 AGCAATCCATCAGCGTCTCAT 59.860 47.619 0.00 0.00 0.00 2.90
405 406 0.538584 AGCAATCCATCAGCGTCTCA 59.461 50.000 0.00 0.00 0.00 3.27
406 407 1.661341 AAGCAATCCATCAGCGTCTC 58.339 50.000 0.00 0.00 0.00 3.36
407 408 2.988010 TAAGCAATCCATCAGCGTCT 57.012 45.000 0.00 0.00 0.00 4.18
408 409 3.198068 TCTTAAGCAATCCATCAGCGTC 58.802 45.455 0.00 0.00 0.00 5.19
409 410 3.266510 TCTTAAGCAATCCATCAGCGT 57.733 42.857 0.00 0.00 0.00 5.07
410 411 4.206698 CTTCTTAAGCAATCCATCAGCG 57.793 45.455 0.00 0.00 0.00 5.18
477 478 3.262420 ACTATTCACGTGGAAGCATGTC 58.738 45.455 17.00 0.00 39.30 3.06
479 480 5.794687 TTTACTATTCACGTGGAAGCATG 57.205 39.130 17.00 2.77 39.30 4.06
480 481 6.038271 GGATTTTACTATTCACGTGGAAGCAT 59.962 38.462 17.00 3.29 39.30 3.79
481 482 5.353123 GGATTTTACTATTCACGTGGAAGCA 59.647 40.000 17.00 0.00 39.30 3.91
482 483 5.353123 TGGATTTTACTATTCACGTGGAAGC 59.647 40.000 17.00 0.00 39.30 3.86
483 484 6.978343 TGGATTTTACTATTCACGTGGAAG 57.022 37.500 17.00 12.81 39.30 3.46
484 485 7.747155 TTTGGATTTTACTATTCACGTGGAA 57.253 32.000 17.00 9.21 40.46 3.53
530 542 9.223099 CTTGCTATCCCAAAATTTCAGATTTTT 57.777 29.630 0.00 0.00 0.00 1.94
577 589 2.287915 GTGCTTCACGAAACATCACAGT 59.712 45.455 0.00 0.00 0.00 3.55
579 591 1.601903 GGTGCTTCACGAAACATCACA 59.398 47.619 0.00 0.00 34.83 3.58
589 602 3.041940 GGGTGTCGGTGCTTCACG 61.042 66.667 0.00 0.00 34.83 4.35
596 609 2.046314 GGTCCATGGGTGTCGGTG 60.046 66.667 13.02 0.00 0.00 4.94
610 623 7.548196 TTTCTTCATTACGAATACCATGGTC 57.452 36.000 23.76 6.29 31.69 4.02
611 624 7.931578 TTTTCTTCATTACGAATACCATGGT 57.068 32.000 23.55 23.55 31.69 3.55
612 625 9.878599 GTATTTTCTTCATTACGAATACCATGG 57.121 33.333 11.19 11.19 31.69 3.66
703 804 4.886163 TGACACCTGTAGTAATATGGGGA 58.114 43.478 2.23 0.00 0.00 4.81
704 805 5.825593 ATGACACCTGTAGTAATATGGGG 57.174 43.478 0.00 0.00 0.00 4.96
705 806 7.509546 AGAAATGACACCTGTAGTAATATGGG 58.490 38.462 0.00 0.00 0.00 4.00
709 810 9.653287 CAAGAAGAAATGACACCTGTAGTAATA 57.347 33.333 0.00 0.00 0.00 0.98
712 813 7.297936 TCAAGAAGAAATGACACCTGTAGTA 57.702 36.000 0.00 0.00 0.00 1.82
729 830 3.549299 AGCGCATGAAGTTTCAAGAAG 57.451 42.857 11.47 0.00 41.13 2.85
733 834 5.522460 GGTATACTAGCGCATGAAGTTTCAA 59.478 40.000 11.47 0.00 41.13 2.69
816 917 6.194235 TGCACCCCTTATGAATTGTAAATCT 58.806 36.000 0.00 0.00 0.00 2.40
824 925 3.979911 TCACATGCACCCCTTATGAATT 58.020 40.909 0.00 0.00 0.00 2.17
829 930 2.225242 TGGTTTCACATGCACCCCTTAT 60.225 45.455 0.00 0.00 0.00 1.73
840 942 6.400568 GGATTTGATGAACATGGTTTCACAT 58.599 36.000 0.00 0.00 38.31 3.21
843 945 4.522405 ACGGATTTGATGAACATGGTTTCA 59.478 37.500 0.00 0.00 39.79 2.69
845 947 4.766891 AGACGGATTTGATGAACATGGTTT 59.233 37.500 0.00 0.00 0.00 3.27
937 1047 0.396139 TCCGCGGTACCCTGTATCTT 60.396 55.000 27.15 0.00 0.00 2.40
938 1048 0.822532 CTCCGCGGTACCCTGTATCT 60.823 60.000 27.15 0.00 0.00 1.98
939 1049 1.658673 CTCCGCGGTACCCTGTATC 59.341 63.158 27.15 0.00 0.00 2.24
940 1050 2.496291 GCTCCGCGGTACCCTGTAT 61.496 63.158 27.15 0.00 0.00 2.29
941 1051 3.142838 GCTCCGCGGTACCCTGTA 61.143 66.667 27.15 1.04 0.00 2.74
945 1055 4.171103 AATGGCTCCGCGGTACCC 62.171 66.667 28.26 23.96 0.00 3.69
946 1056 2.588034 GAATGGCTCCGCGGTACC 60.588 66.667 27.15 26.41 0.00 3.34
947 1057 1.591863 GAGAATGGCTCCGCGGTAC 60.592 63.158 27.15 18.17 37.69 3.34
948 1058 2.812499 GAGAATGGCTCCGCGGTA 59.188 61.111 27.15 11.20 37.69 4.02
1091 1206 2.358984 GGGGCGCTTCCGTTGTAA 60.359 61.111 7.64 0.00 36.67 2.41
1092 1207 2.791501 GAAGGGGCGCTTCCGTTGTA 62.792 60.000 28.33 0.00 35.34 2.41
1602 1729 3.230005 CTCCTCGATCCTCGCGTCG 62.230 68.421 5.77 8.44 40.21 5.12
1658 1785 1.550524 CCATCTCCACCGTCTTCTTGA 59.449 52.381 0.00 0.00 0.00 3.02
1719 1857 4.676196 GCACCAAAATGGCTGAGTAATCAG 60.676 45.833 15.74 15.74 42.67 2.90
1720 1858 3.193267 GCACCAAAATGGCTGAGTAATCA 59.807 43.478 0.00 0.00 42.67 2.57
1721 1859 3.445096 AGCACCAAAATGGCTGAGTAATC 59.555 43.478 0.00 0.00 42.67 1.75
1722 1860 3.434309 AGCACCAAAATGGCTGAGTAAT 58.566 40.909 0.00 0.00 42.67 1.89
1723 1861 2.875296 AGCACCAAAATGGCTGAGTAA 58.125 42.857 0.00 0.00 42.67 2.24
1724 1862 2.584835 AGCACCAAAATGGCTGAGTA 57.415 45.000 0.00 0.00 42.67 2.59
1725 1863 1.615392 GAAGCACCAAAATGGCTGAGT 59.385 47.619 0.00 0.00 42.67 3.41
1726 1864 1.401931 CGAAGCACCAAAATGGCTGAG 60.402 52.381 0.00 0.00 42.67 3.35
1727 1865 0.597568 CGAAGCACCAAAATGGCTGA 59.402 50.000 0.00 0.00 42.67 4.26
1728 1866 3.111536 CGAAGCACCAAAATGGCTG 57.888 52.632 0.00 0.00 42.67 4.85
1748 1886 2.264813 CCTTTTGCATGATCCAAAGCG 58.735 47.619 0.00 0.00 34.10 4.68
1809 1951 8.429641 GGGGATTTCTTACTACATTGATACAGA 58.570 37.037 0.00 0.00 0.00 3.41
1811 1953 8.096621 TGGGGATTTCTTACTACATTGATACA 57.903 34.615 0.00 0.00 0.00 2.29
1825 1967 7.783119 ACACTAACTTTAACTTGGGGATTTCTT 59.217 33.333 0.00 0.00 0.00 2.52
1983 2142 5.806654 AACACAATGGTTCTTTTAGGCAT 57.193 34.783 0.00 0.00 0.00 4.40
1984 2143 5.606348 AAACACAATGGTTCTTTTAGGCA 57.394 34.783 0.00 0.00 0.00 4.75
1985 2144 6.918892 AAAAACACAATGGTTCTTTTAGGC 57.081 33.333 0.00 0.00 0.00 3.93
2064 2223 9.599322 GCCAATTTCACGAATCTAAGTTATATG 57.401 33.333 0.00 0.00 0.00 1.78
2065 2224 9.561069 AGCCAATTTCACGAATCTAAGTTATAT 57.439 29.630 0.00 0.00 0.00 0.86
2086 2245 3.181329 TCCTCCTAGAATGTTCAGCCAA 58.819 45.455 0.00 0.00 0.00 4.52
2091 2250 9.838339 GAGAAAATAATCCTCCTAGAATGTTCA 57.162 33.333 0.00 0.00 0.00 3.18
2094 2253 9.844257 CTTGAGAAAATAATCCTCCTAGAATGT 57.156 33.333 0.00 0.00 0.00 2.71
2328 2487 1.810151 GACAGCTAATGCAAAACGGGA 59.190 47.619 0.00 0.00 42.74 5.14
2358 2517 7.184936 TGGGAATATCTAGTAAACCAAAAGGGA 59.815 37.037 0.00 0.00 41.15 4.20
2376 2535 5.762179 TTCAGCGAGGATTATGGGAATAT 57.238 39.130 0.00 0.00 0.00 1.28
2378 2537 4.137543 GTTTCAGCGAGGATTATGGGAAT 58.862 43.478 0.00 0.00 0.00 3.01
2405 2564 3.694043 AAAGAAGAGAAGAGGCAGGAC 57.306 47.619 0.00 0.00 0.00 3.85
2407 2566 3.080319 CCAAAAGAAGAGAAGAGGCAGG 58.920 50.000 0.00 0.00 0.00 4.85
2422 2581 5.535753 AGTCTTGTCAAAATCCCCAAAAG 57.464 39.130 0.00 0.00 0.00 2.27
2426 2585 3.117322 TCCAAGTCTTGTCAAAATCCCCA 60.117 43.478 11.61 0.00 0.00 4.96
2453 2613 3.554960 CCCAGAACAAGATGTGTCGAAGA 60.555 47.826 0.00 0.00 40.60 2.87
2454 2614 2.738846 CCCAGAACAAGATGTGTCGAAG 59.261 50.000 0.00 0.00 40.60 3.79
2455 2615 2.104111 ACCCAGAACAAGATGTGTCGAA 59.896 45.455 0.00 0.00 40.60 3.71
2481 2641 9.079833 CAAATGTAAGCATGGAGTTTAAGATTG 57.920 33.333 0.00 0.00 35.15 2.67
2546 2706 1.805254 GCAGGCTGCATAACACCAG 59.195 57.895 33.33 0.00 44.26 4.00
2653 2813 3.490155 CGTCATCTGTCATTCAGCTCATC 59.510 47.826 0.00 0.00 43.32 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.