Multiple sequence alignment - TraesCS7D01G509000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G509000 chr7D 100.000 3964 0 0 1 3964 612771629 612775592 0.000000e+00 7321.0
1 TraesCS7D01G509000 chr7D 85.155 1226 149 19 2145 3358 612708058 612709262 0.000000e+00 1225.0
2 TraesCS7D01G509000 chr7D 83.569 706 95 11 1132 1832 612706615 612707304 3.340000e-180 641.0
3 TraesCS7D01G509000 chr7D 95.028 362 16 2 1 361 121631619 121631259 5.750000e-158 568.0
4 TraesCS7D01G509000 chr7D 94.475 362 19 1 1 361 576534093 576534454 1.240000e-154 556.0
5 TraesCS7D01G509000 chr7D 93.750 368 22 1 1 367 576555817 576556184 5.790000e-153 551.0
6 TraesCS7D01G509000 chr7D 74.562 1427 272 57 1506 2872 612404066 612405461 1.250000e-149 540.0
7 TraesCS7D01G509000 chr7D 74.157 1068 202 51 1800 2810 612935407 612936457 3.740000e-100 375.0
8 TraesCS7D01G509000 chr7D 89.080 174 10 4 3561 3733 612709337 612709502 1.440000e-49 207.0
9 TraesCS7D01G509000 chr7D 83.117 231 34 4 1235 1462 612965674 612965446 5.190000e-49 206.0
10 TraesCS7D01G509000 chr7D 93.671 79 5 0 3883 3961 612709625 612709703 6.960000e-23 119.0
11 TraesCS7D01G509000 chr7D 92.500 80 5 1 3796 3875 612709504 612709582 3.240000e-21 113.0
12 TraesCS7D01G509000 chr7D 90.769 65 4 1 866 928 28178317 28178253 7.060000e-13 86.1
13 TraesCS7D01G509000 chr7A 94.141 1980 81 13 1993 3964 703560422 703562374 0.000000e+00 2981.0
14 TraesCS7D01G509000 chr7A 89.009 1292 88 18 720 1995 703557450 703558703 0.000000e+00 1550.0
15 TraesCS7D01G509000 chr7A 75.587 1577 292 65 1237 2762 701620698 701619164 0.000000e+00 693.0
16 TraesCS7D01G509000 chr7A 84.627 644 62 20 2725 3358 703545801 703546417 1.220000e-169 606.0
17 TraesCS7D01G509000 chr7A 93.514 370 19 3 362 728 703556761 703557128 2.690000e-151 545.0
18 TraesCS7D01G509000 chr7A 73.191 1645 307 75 1165 2744 701605028 701603453 4.640000e-129 472.0
19 TraesCS7D01G509000 chr7A 86.857 175 14 6 3561 3734 703546492 703546658 1.880000e-43 187.0
20 TraesCS7D01G509000 chr7A 91.463 82 7 0 3883 3964 703546770 703546851 3.240000e-21 113.0
21 TraesCS7D01G509000 chr7A 76.515 132 25 5 2395 2523 704392022 704392150 2.560000e-07 67.6
22 TraesCS7D01G509000 chr7B 81.592 1972 255 52 1406 3358 702177142 702179024 0.000000e+00 1531.0
23 TraesCS7D01G509000 chr7B 94.598 833 36 5 2188 3017 702228550 702229376 0.000000e+00 1280.0
24 TraesCS7D01G509000 chr7B 95.536 672 23 2 3293 3964 702233686 702234350 0.000000e+00 1068.0
25 TraesCS7D01G509000 chr7B 86.798 712 63 16 1170 1874 702224721 702225408 0.000000e+00 765.0
26 TraesCS7D01G509000 chr7B 75.249 1705 323 70 1245 2892 701013682 701012020 0.000000e+00 719.0
27 TraesCS7D01G509000 chr7B 87.602 492 40 8 362 850 702207261 702207734 5.790000e-153 551.0
28 TraesCS7D01G509000 chr7B 91.573 356 14 4 1859 2206 702227059 702227406 9.970000e-131 477.0
29 TraesCS7D01G509000 chr7B 92.797 236 11 2 3014 3243 702233438 702233673 1.760000e-88 337.0
30 TraesCS7D01G509000 chr7B 74.880 625 118 15 2198 2810 702461114 702461711 8.510000e-62 248.0
31 TraesCS7D01G509000 chr7B 76.623 308 69 3 2484 2789 702470154 702470460 2.450000e-37 167.0
32 TraesCS7D01G509000 chr7B 92.683 82 6 0 3883 3964 702179370 702179451 6.960000e-23 119.0
33 TraesCS7D01G509000 chr7B 90.361 83 6 2 3813 3893 702179268 702179350 1.510000e-19 108.0
34 TraesCS7D01G509000 chr1B 80.020 2002 289 71 1165 3108 10048517 10046569 0.000000e+00 1378.0
35 TraesCS7D01G509000 chr1B 90.411 73 3 2 3449 3518 571834695 571834624 4.220000e-15 93.5
36 TraesCS7D01G509000 chr1B 90.625 64 5 1 866 928 49024317 49024380 2.540000e-12 84.2
37 TraesCS7D01G509000 chr1B 88.571 70 5 2 861 928 1346398 1346330 9.130000e-12 82.4
38 TraesCS7D01G509000 chr1D 81.505 930 126 25 1154 2070 7235284 7236180 0.000000e+00 723.0
39 TraesCS7D01G509000 chr1D 80.064 943 148 27 2196 3108 7236560 7237492 0.000000e+00 664.0
40 TraesCS7D01G509000 chr1D 90.411 73 3 2 3449 3518 422984285 422984214 4.220000e-15 93.5
41 TraesCS7D01G509000 chr3D 95.028 362 17 1 1 361 11893140 11893501 5.750000e-158 568.0
42 TraesCS7D01G509000 chr3D 94.766 363 17 2 1 362 11898561 11898922 7.440000e-157 564.0
43 TraesCS7D01G509000 chr3D 94.521 365 19 1 1 365 278189290 278188927 2.670000e-156 562.0
44 TraesCS7D01G509000 chr5B 73.883 1612 329 62 1246 2806 689180330 689178760 9.620000e-156 560.0
45 TraesCS7D01G509000 chr4D 94.490 363 18 2 1 361 7264481 7264119 3.460000e-155 558.0
46 TraesCS7D01G509000 chr4D 94.475 362 19 1 1 361 414005145 414005506 1.240000e-154 556.0
47 TraesCS7D01G509000 chr4D 93.750 368 21 2 1 366 26031168 26030801 5.790000e-153 551.0
48 TraesCS7D01G509000 chr2A 79.935 309 55 6 2428 2734 698177993 698178296 1.850000e-53 220.0
49 TraesCS7D01G509000 chr2A 88.571 70 5 2 861 928 775979923 775979855 9.130000e-12 82.4
50 TraesCS7D01G509000 chr2D 77.603 317 58 10 2424 2734 557950238 557950547 3.150000e-41 180.0
51 TraesCS7D01G509000 chr2D 90.769 65 4 1 866 928 36493070 36493006 7.060000e-13 86.1
52 TraesCS7D01G509000 chr1A 91.781 73 2 3 3449 3518 518935136 518935065 9.070000e-17 99.0
53 TraesCS7D01G509000 chr6D 89.855 69 5 2 861 928 18495545 18495478 1.960000e-13 87.9
54 TraesCS7D01G509000 chr2B 90.769 65 5 1 865 928 403704550 403704614 7.060000e-13 86.1
55 TraesCS7D01G509000 chr6A 90.625 64 5 1 866 928 599872629 599872566 2.540000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G509000 chr7D 612771629 612775592 3963 False 7321.000000 7321 100.000000 1 3964 1 chr7D.!!$F4 3963
1 TraesCS7D01G509000 chr7D 612404066 612405461 1395 False 540.000000 540 74.562000 1506 2872 1 chr7D.!!$F3 1366
2 TraesCS7D01G509000 chr7D 612706615 612709703 3088 False 461.000000 1225 88.795000 1132 3961 5 chr7D.!!$F6 2829
3 TraesCS7D01G509000 chr7D 612935407 612936457 1050 False 375.000000 375 74.157000 1800 2810 1 chr7D.!!$F5 1010
4 TraesCS7D01G509000 chr7A 703556761 703562374 5613 False 1692.000000 2981 92.221333 362 3964 3 chr7A.!!$F3 3602
5 TraesCS7D01G509000 chr7A 701619164 701620698 1534 True 693.000000 693 75.587000 1237 2762 1 chr7A.!!$R2 1525
6 TraesCS7D01G509000 chr7A 701603453 701605028 1575 True 472.000000 472 73.191000 1165 2744 1 chr7A.!!$R1 1579
7 TraesCS7D01G509000 chr7A 703545801 703546851 1050 False 302.000000 606 87.649000 2725 3964 3 chr7A.!!$F2 1239
8 TraesCS7D01G509000 chr7B 702224721 702229376 4655 False 840.666667 1280 90.989667 1170 3017 3 chr7B.!!$F5 1847
9 TraesCS7D01G509000 chr7B 701012020 701013682 1662 True 719.000000 719 75.249000 1245 2892 1 chr7B.!!$R1 1647
10 TraesCS7D01G509000 chr7B 702233438 702234350 912 False 702.500000 1068 94.166500 3014 3964 2 chr7B.!!$F6 950
11 TraesCS7D01G509000 chr7B 702177142 702179451 2309 False 586.000000 1531 88.212000 1406 3964 3 chr7B.!!$F4 2558
12 TraesCS7D01G509000 chr7B 702461114 702461711 597 False 248.000000 248 74.880000 2198 2810 1 chr7B.!!$F2 612
13 TraesCS7D01G509000 chr1B 10046569 10048517 1948 True 1378.000000 1378 80.020000 1165 3108 1 chr1B.!!$R2 1943
14 TraesCS7D01G509000 chr1D 7235284 7237492 2208 False 693.500000 723 80.784500 1154 3108 2 chr1D.!!$F1 1954
15 TraesCS7D01G509000 chr5B 689178760 689180330 1570 True 560.000000 560 73.883000 1246 2806 1 chr5B.!!$R1 1560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.037160 AACCCCTTTATCGCGTTGGT 59.963 50.0 5.77 0.0 0.0 3.67 F
212 213 0.102300 GCGTTGGTTGCAAGGTTCTT 59.898 50.0 0.00 0.0 0.0 2.52 F
859 1193 0.114168 TTGTTGGATGGTTGGGAGGG 59.886 55.0 0.00 0.0 0.0 4.30 F
1181 1532 0.533755 CCATGGAGTTGAGATCGGGC 60.534 60.0 5.56 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1161 1509 0.533755 CCCGATCTCAACTCCATGGC 60.534 60.0 6.96 0.0 0.00 4.40 R
1728 2106 0.968393 GAGAGCAAGGAGTCGAGGGT 60.968 60.0 0.00 0.0 0.00 4.34 R
2039 6241 0.980423 GGGAGCTGTCCTTGTCTCTT 59.020 55.0 0.00 0.0 43.36 2.85 R
2978 8726 0.243636 ATGCAAAAGTAAGCCCACGC 59.756 50.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.120976 AGTGAAACCTATGGCCCCT 57.879 52.632 0.00 0.00 37.80 4.79
19 20 0.625849 AGTGAAACCTATGGCCCCTG 59.374 55.000 0.00 0.00 37.80 4.45
20 21 0.395724 GTGAAACCTATGGCCCCTGG 60.396 60.000 0.00 1.20 0.00 4.45
21 22 1.230212 GAAACCTATGGCCCCTGGG 59.770 63.158 5.50 5.50 38.57 4.45
22 23 1.546460 AAACCTATGGCCCCTGGGT 60.546 57.895 12.71 1.78 37.65 4.51
23 24 1.580994 AAACCTATGGCCCCTGGGTC 61.581 60.000 12.71 0.00 41.01 4.46
24 25 2.039405 CCTATGGCCCCTGGGTCT 60.039 66.667 12.71 0.00 41.25 3.85
25 26 1.238938 CCTATGGCCCCTGGGTCTA 59.761 63.158 12.71 0.00 41.25 2.59
26 27 0.178861 CCTATGGCCCCTGGGTCTAT 60.179 60.000 12.71 4.70 41.25 1.98
27 28 1.747444 CTATGGCCCCTGGGTCTATT 58.253 55.000 12.71 0.00 41.25 1.73
28 29 2.065799 CTATGGCCCCTGGGTCTATTT 58.934 52.381 12.71 0.00 41.25 1.40
29 30 1.318934 ATGGCCCCTGGGTCTATTTT 58.681 50.000 12.71 0.00 41.25 1.82
30 31 0.629058 TGGCCCCTGGGTCTATTTTC 59.371 55.000 12.71 0.00 41.25 2.29
31 32 0.106167 GGCCCCTGGGTCTATTTTCC 60.106 60.000 12.71 0.00 36.84 3.13
32 33 0.629058 GCCCCTGGGTCTATTTTCCA 59.371 55.000 12.71 0.00 37.65 3.53
33 34 1.217942 GCCCCTGGGTCTATTTTCCAT 59.782 52.381 12.71 0.00 37.65 3.41
34 35 2.753168 GCCCCTGGGTCTATTTTCCATC 60.753 54.545 12.71 0.00 37.65 3.51
35 36 2.513738 CCCCTGGGTCTATTTTCCATCA 59.486 50.000 12.71 0.00 0.00 3.07
36 37 3.140895 CCCCTGGGTCTATTTTCCATCAT 59.859 47.826 12.71 0.00 0.00 2.45
37 38 4.353788 CCCCTGGGTCTATTTTCCATCATA 59.646 45.833 12.71 0.00 0.00 2.15
38 39 5.015603 CCCCTGGGTCTATTTTCCATCATAT 59.984 44.000 12.71 0.00 0.00 1.78
39 40 6.469239 CCCCTGGGTCTATTTTCCATCATATT 60.469 42.308 12.71 0.00 0.00 1.28
40 41 7.257382 CCCCTGGGTCTATTTTCCATCATATTA 60.257 40.741 12.71 0.00 0.00 0.98
41 42 8.170061 CCCTGGGTCTATTTTCCATCATATTAA 58.830 37.037 3.97 0.00 0.00 1.40
42 43 9.759473 CCTGGGTCTATTTTCCATCATATTAAT 57.241 33.333 0.00 0.00 0.00 1.40
48 49 9.890629 TCTATTTTCCATCATATTAATCTCCCG 57.109 33.333 0.00 0.00 0.00 5.14
49 50 9.672673 CTATTTTCCATCATATTAATCTCCCGT 57.327 33.333 0.00 0.00 0.00 5.28
50 51 7.979444 TTTTCCATCATATTAATCTCCCGTC 57.021 36.000 0.00 0.00 0.00 4.79
51 52 6.680148 TTCCATCATATTAATCTCCCGTCA 57.320 37.500 0.00 0.00 0.00 4.35
52 53 6.680148 TCCATCATATTAATCTCCCGTCAA 57.320 37.500 0.00 0.00 0.00 3.18
53 54 6.464222 TCCATCATATTAATCTCCCGTCAAC 58.536 40.000 0.00 0.00 0.00 3.18
54 55 6.270000 TCCATCATATTAATCTCCCGTCAACT 59.730 38.462 0.00 0.00 0.00 3.16
55 56 7.453439 TCCATCATATTAATCTCCCGTCAACTA 59.547 37.037 0.00 0.00 0.00 2.24
56 57 7.761704 CCATCATATTAATCTCCCGTCAACTAG 59.238 40.741 0.00 0.00 0.00 2.57
57 58 6.688578 TCATATTAATCTCCCGTCAACTAGC 58.311 40.000 0.00 0.00 0.00 3.42
58 59 6.493802 TCATATTAATCTCCCGTCAACTAGCT 59.506 38.462 0.00 0.00 0.00 3.32
59 60 7.668469 TCATATTAATCTCCCGTCAACTAGCTA 59.332 37.037 0.00 0.00 0.00 3.32
60 61 5.511234 TTAATCTCCCGTCAACTAGCTAC 57.489 43.478 0.00 0.00 0.00 3.58
61 62 2.803030 TCTCCCGTCAACTAGCTACT 57.197 50.000 0.00 0.00 0.00 2.57
62 63 3.083122 TCTCCCGTCAACTAGCTACTT 57.917 47.619 0.00 0.00 0.00 2.24
63 64 3.428532 TCTCCCGTCAACTAGCTACTTT 58.571 45.455 0.00 0.00 0.00 2.66
64 65 3.830755 TCTCCCGTCAACTAGCTACTTTT 59.169 43.478 0.00 0.00 0.00 2.27
65 66 5.012239 TCTCCCGTCAACTAGCTACTTTTA 58.988 41.667 0.00 0.00 0.00 1.52
66 67 5.655532 TCTCCCGTCAACTAGCTACTTTTAT 59.344 40.000 0.00 0.00 0.00 1.40
67 68 5.899299 TCCCGTCAACTAGCTACTTTTATC 58.101 41.667 0.00 0.00 0.00 1.75
68 69 4.738740 CCCGTCAACTAGCTACTTTTATCG 59.261 45.833 0.00 0.00 0.00 2.92
69 70 5.338365 CCGTCAACTAGCTACTTTTATCGT 58.662 41.667 0.00 0.00 0.00 3.73
70 71 6.458751 CCCGTCAACTAGCTACTTTTATCGTA 60.459 42.308 0.00 0.00 0.00 3.43
71 72 6.632035 CCGTCAACTAGCTACTTTTATCGTAG 59.368 42.308 0.00 0.00 37.88 3.51
72 73 7.185453 CGTCAACTAGCTACTTTTATCGTAGT 58.815 38.462 0.00 0.00 37.31 2.73
73 74 7.695618 CGTCAACTAGCTACTTTTATCGTAGTT 59.304 37.037 0.00 0.00 37.31 2.24
74 75 9.351570 GTCAACTAGCTACTTTTATCGTAGTTT 57.648 33.333 0.00 0.00 37.31 2.66
81 82 9.983804 AGCTACTTTTATCGTAGTTTATTTTGC 57.016 29.630 0.00 0.00 37.31 3.68
82 83 9.763465 GCTACTTTTATCGTAGTTTATTTTGCA 57.237 29.630 0.00 0.00 37.31 4.08
158 159 9.709495 ATTATCTCTATCAGATCTGACTTTTGC 57.291 33.333 27.37 0.00 41.39 3.68
159 160 6.535963 TCTCTATCAGATCTGACTTTTGCA 57.464 37.500 27.37 3.10 43.11 4.08
160 161 6.939622 TCTCTATCAGATCTGACTTTTGCAA 58.060 36.000 27.37 2.31 43.11 4.08
161 162 7.040494 TCTCTATCAGATCTGACTTTTGCAAG 58.960 38.462 27.37 14.96 43.11 4.01
162 163 6.705302 TCTATCAGATCTGACTTTTGCAAGT 58.295 36.000 27.37 10.18 46.64 3.16
163 164 5.624344 ATCAGATCTGACTTTTGCAAGTG 57.376 39.130 27.37 0.00 43.79 3.16
164 165 3.817084 TCAGATCTGACTTTTGCAAGTGG 59.183 43.478 21.67 0.00 43.79 4.00
165 166 2.555757 AGATCTGACTTTTGCAAGTGGC 59.444 45.455 0.00 0.00 43.79 5.01
166 167 1.032014 TCTGACTTTTGCAAGTGGCC 58.968 50.000 0.00 0.00 43.79 5.36
167 168 0.746063 CTGACTTTTGCAAGTGGCCA 59.254 50.000 0.00 0.00 43.79 5.36
168 169 1.136695 CTGACTTTTGCAAGTGGCCAA 59.863 47.619 7.24 0.00 43.79 4.52
169 170 1.136695 TGACTTTTGCAAGTGGCCAAG 59.863 47.619 7.24 0.00 43.79 3.61
170 171 1.408702 GACTTTTGCAAGTGGCCAAGA 59.591 47.619 7.24 0.00 43.79 3.02
171 172 1.830477 ACTTTTGCAAGTGGCCAAGAA 59.170 42.857 7.24 0.00 42.05 2.52
172 173 2.159057 ACTTTTGCAAGTGGCCAAGAAG 60.159 45.455 7.24 4.92 42.05 2.85
173 174 0.752054 TTTGCAAGTGGCCAAGAAGG 59.248 50.000 7.24 0.00 43.89 3.46
174 175 1.114722 TTGCAAGTGGCCAAGAAGGG 61.115 55.000 7.24 0.00 43.89 3.95
175 176 1.228552 GCAAGTGGCCAAGAAGGGA 60.229 57.895 7.24 0.00 38.09 4.20
176 177 0.613012 GCAAGTGGCCAAGAAGGGAT 60.613 55.000 7.24 0.00 38.09 3.85
177 178 1.928868 CAAGTGGCCAAGAAGGGATT 58.071 50.000 7.24 0.00 38.09 3.01
178 179 1.547372 CAAGTGGCCAAGAAGGGATTG 59.453 52.381 7.24 0.00 38.09 2.67
179 180 1.075601 AGTGGCCAAGAAGGGATTGA 58.924 50.000 7.24 0.00 38.09 2.57
180 181 1.177401 GTGGCCAAGAAGGGATTGAC 58.823 55.000 7.24 0.00 38.09 3.18
181 182 0.776810 TGGCCAAGAAGGGATTGACA 59.223 50.000 0.61 0.00 38.09 3.58
182 183 1.146774 TGGCCAAGAAGGGATTGACAA 59.853 47.619 0.61 0.00 38.09 3.18
183 184 1.546029 GGCCAAGAAGGGATTGACAAC 59.454 52.381 0.00 0.00 38.09 3.32
184 185 1.546029 GCCAAGAAGGGATTGACAACC 59.454 52.381 0.00 0.00 38.09 3.77
185 186 2.171003 CCAAGAAGGGATTGACAACCC 58.829 52.381 14.59 14.59 45.88 4.11
186 187 2.171003 CAAGAAGGGATTGACAACCCC 58.829 52.381 10.02 10.02 46.64 4.95
193 194 2.949644 GGGATTGACAACCCCTTTATCG 59.050 50.000 10.82 0.00 40.19 2.92
194 195 2.357952 GGATTGACAACCCCTTTATCGC 59.642 50.000 0.00 0.00 0.00 4.58
195 196 1.444836 TTGACAACCCCTTTATCGCG 58.555 50.000 0.00 0.00 0.00 5.87
196 197 0.322322 TGACAACCCCTTTATCGCGT 59.678 50.000 5.77 0.00 0.00 6.01
197 198 1.270947 TGACAACCCCTTTATCGCGTT 60.271 47.619 5.77 0.00 0.00 4.84
198 199 1.129811 GACAACCCCTTTATCGCGTTG 59.870 52.381 5.77 2.01 39.70 4.10
199 200 0.450184 CAACCCCTTTATCGCGTTGG 59.550 55.000 5.77 2.32 32.14 3.77
200 201 0.037160 AACCCCTTTATCGCGTTGGT 59.963 50.000 5.77 0.00 0.00 3.67
201 202 0.037160 ACCCCTTTATCGCGTTGGTT 59.963 50.000 5.77 0.00 0.00 3.67
202 203 0.450184 CCCCTTTATCGCGTTGGTTG 59.550 55.000 5.77 0.00 0.00 3.77
203 204 0.179174 CCCTTTATCGCGTTGGTTGC 60.179 55.000 5.77 0.00 0.00 4.17
204 205 0.519519 CCTTTATCGCGTTGGTTGCA 59.480 50.000 5.77 0.00 0.00 4.08
205 206 1.068885 CCTTTATCGCGTTGGTTGCAA 60.069 47.619 5.77 0.00 0.00 4.08
206 207 2.241722 CTTTATCGCGTTGGTTGCAAG 58.758 47.619 5.77 0.00 0.00 4.01
207 208 0.519519 TTATCGCGTTGGTTGCAAGG 59.480 50.000 5.77 0.00 0.00 3.61
208 209 0.604243 TATCGCGTTGGTTGCAAGGT 60.604 50.000 5.77 0.00 0.00 3.50
209 210 1.452145 ATCGCGTTGGTTGCAAGGTT 61.452 50.000 5.77 0.00 0.00 3.50
210 211 1.657181 CGCGTTGGTTGCAAGGTTC 60.657 57.895 0.00 0.00 0.00 3.62
211 212 1.733526 GCGTTGGTTGCAAGGTTCT 59.266 52.632 0.00 0.00 0.00 3.01
212 213 0.102300 GCGTTGGTTGCAAGGTTCTT 59.898 50.000 0.00 0.00 0.00 2.52
213 214 1.335496 GCGTTGGTTGCAAGGTTCTTA 59.665 47.619 0.00 0.00 0.00 2.10
214 215 2.223618 GCGTTGGTTGCAAGGTTCTTAA 60.224 45.455 0.00 0.00 0.00 1.85
215 216 3.552068 GCGTTGGTTGCAAGGTTCTTAAT 60.552 43.478 0.00 0.00 0.00 1.40
216 217 4.616953 CGTTGGTTGCAAGGTTCTTAATT 58.383 39.130 0.00 0.00 0.00 1.40
217 218 4.444056 CGTTGGTTGCAAGGTTCTTAATTG 59.556 41.667 0.00 0.00 0.00 2.32
218 219 5.356426 GTTGGTTGCAAGGTTCTTAATTGT 58.644 37.500 0.00 0.00 0.00 2.71
219 220 5.606348 TGGTTGCAAGGTTCTTAATTGTT 57.394 34.783 0.00 0.00 0.00 2.83
220 221 5.983540 TGGTTGCAAGGTTCTTAATTGTTT 58.016 33.333 0.00 0.00 0.00 2.83
221 222 5.814705 TGGTTGCAAGGTTCTTAATTGTTTG 59.185 36.000 0.00 0.00 0.00 2.93
222 223 5.815222 GGTTGCAAGGTTCTTAATTGTTTGT 59.185 36.000 0.00 0.00 0.00 2.83
223 224 6.238076 GGTTGCAAGGTTCTTAATTGTTTGTG 60.238 38.462 0.00 0.00 0.00 3.33
224 225 4.808364 TGCAAGGTTCTTAATTGTTTGTGC 59.192 37.500 0.00 0.00 0.00 4.57
225 226 4.808364 GCAAGGTTCTTAATTGTTTGTGCA 59.192 37.500 0.00 0.00 0.00 4.57
226 227 5.466393 GCAAGGTTCTTAATTGTTTGTGCAT 59.534 36.000 0.00 0.00 0.00 3.96
227 228 6.564499 GCAAGGTTCTTAATTGTTTGTGCATG 60.564 38.462 0.00 0.00 0.00 4.06
228 229 6.160576 AGGTTCTTAATTGTTTGTGCATGT 57.839 33.333 0.00 0.00 0.00 3.21
229 230 7.283625 AGGTTCTTAATTGTTTGTGCATGTA 57.716 32.000 0.00 0.00 0.00 2.29
230 231 7.145323 AGGTTCTTAATTGTTTGTGCATGTAC 58.855 34.615 7.03 7.03 0.00 2.90
231 232 7.014230 AGGTTCTTAATTGTTTGTGCATGTACT 59.986 33.333 15.25 0.00 0.00 2.73
232 233 8.293867 GGTTCTTAATTGTTTGTGCATGTACTA 58.706 33.333 15.25 4.64 0.00 1.82
233 234 9.329913 GTTCTTAATTGTTTGTGCATGTACTAG 57.670 33.333 15.25 0.00 0.00 2.57
234 235 8.039603 TCTTAATTGTTTGTGCATGTACTAGG 57.960 34.615 15.25 0.00 0.00 3.02
235 236 5.643379 AATTGTTTGTGCATGTACTAGGG 57.357 39.130 15.25 0.00 0.00 3.53
236 237 4.359434 TTGTTTGTGCATGTACTAGGGA 57.641 40.909 15.25 0.00 0.00 4.20
237 238 4.568072 TGTTTGTGCATGTACTAGGGAT 57.432 40.909 15.25 0.00 0.00 3.85
238 239 4.917385 TGTTTGTGCATGTACTAGGGATT 58.083 39.130 15.25 0.00 0.00 3.01
239 240 5.321102 TGTTTGTGCATGTACTAGGGATTT 58.679 37.500 15.25 0.00 0.00 2.17
240 241 5.182950 TGTTTGTGCATGTACTAGGGATTTG 59.817 40.000 15.25 0.00 0.00 2.32
241 242 3.278574 TGTGCATGTACTAGGGATTTGC 58.721 45.455 15.25 0.00 0.00 3.68
242 243 2.287915 GTGCATGTACTAGGGATTTGCG 59.712 50.000 6.69 0.00 0.00 4.85
243 244 2.093181 TGCATGTACTAGGGATTTGCGT 60.093 45.455 0.00 0.00 0.00 5.24
244 245 2.287915 GCATGTACTAGGGATTTGCGTG 59.712 50.000 0.00 0.00 0.00 5.34
245 246 3.531538 CATGTACTAGGGATTTGCGTGT 58.468 45.455 0.00 0.00 0.00 4.49
246 247 4.689071 CATGTACTAGGGATTTGCGTGTA 58.311 43.478 0.00 0.00 0.00 2.90
247 248 4.380841 TGTACTAGGGATTTGCGTGTAG 57.619 45.455 0.00 0.00 0.00 2.74
258 259 1.437986 GCGTGTAGCCTCCTACTGG 59.562 63.158 2.95 0.00 43.51 4.00
259 260 1.035932 GCGTGTAGCCTCCTACTGGA 61.036 60.000 2.95 0.00 43.51 3.86
260 261 1.693627 CGTGTAGCCTCCTACTGGAT 58.306 55.000 2.95 0.00 43.51 3.41
261 262 2.032620 CGTGTAGCCTCCTACTGGATT 58.967 52.381 2.95 0.00 43.51 3.01
262 263 2.223829 CGTGTAGCCTCCTACTGGATTG 60.224 54.545 2.95 0.00 43.51 2.67
263 264 3.031736 GTGTAGCCTCCTACTGGATTGA 58.968 50.000 2.95 0.00 43.51 2.57
264 265 3.643792 GTGTAGCCTCCTACTGGATTGAT 59.356 47.826 2.95 0.00 43.51 2.57
265 266 4.833380 GTGTAGCCTCCTACTGGATTGATA 59.167 45.833 2.95 0.00 43.51 2.15
266 267 5.482175 GTGTAGCCTCCTACTGGATTGATAT 59.518 44.000 2.95 0.00 43.51 1.63
267 268 5.717178 TGTAGCCTCCTACTGGATTGATATC 59.283 44.000 0.00 0.00 43.51 1.63
268 269 5.022227 AGCCTCCTACTGGATTGATATCT 57.978 43.478 3.98 0.00 42.29 1.98
269 270 5.410602 AGCCTCCTACTGGATTGATATCTT 58.589 41.667 3.98 0.00 42.29 2.40
270 271 5.248020 AGCCTCCTACTGGATTGATATCTTG 59.752 44.000 3.98 0.00 42.29 3.02
271 272 5.570439 GCCTCCTACTGGATTGATATCTTGG 60.570 48.000 3.98 0.00 42.29 3.61
272 273 5.545723 CCTCCTACTGGATTGATATCTTGGT 59.454 44.000 3.98 0.00 42.29 3.67
273 274 6.043706 CCTCCTACTGGATTGATATCTTGGTT 59.956 42.308 3.98 0.00 42.29 3.67
274 275 7.067496 TCCTACTGGATTGATATCTTGGTTC 57.933 40.000 3.98 0.00 37.46 3.62
275 276 6.846505 TCCTACTGGATTGATATCTTGGTTCT 59.153 38.462 3.98 0.00 37.46 3.01
276 277 7.015682 TCCTACTGGATTGATATCTTGGTTCTC 59.984 40.741 3.98 0.00 37.46 2.87
277 278 6.566079 ACTGGATTGATATCTTGGTTCTCA 57.434 37.500 3.98 0.00 0.00 3.27
278 279 6.962182 ACTGGATTGATATCTTGGTTCTCAA 58.038 36.000 3.98 0.00 0.00 3.02
279 280 7.405292 ACTGGATTGATATCTTGGTTCTCAAA 58.595 34.615 3.98 0.00 34.56 2.69
280 281 7.890127 ACTGGATTGATATCTTGGTTCTCAAAA 59.110 33.333 3.98 0.00 34.56 2.44
281 282 8.648698 TGGATTGATATCTTGGTTCTCAAAAA 57.351 30.769 3.98 0.00 34.56 1.94
282 283 8.522830 TGGATTGATATCTTGGTTCTCAAAAAC 58.477 33.333 3.98 0.00 34.56 2.43
283 284 8.743714 GGATTGATATCTTGGTTCTCAAAAACT 58.256 33.333 3.98 0.00 34.56 2.66
284 285 9.565213 GATTGATATCTTGGTTCTCAAAAACTG 57.435 33.333 3.98 0.00 34.56 3.16
285 286 8.690203 TTGATATCTTGGTTCTCAAAAACTGA 57.310 30.769 3.98 0.00 34.56 3.41
299 300 8.895932 CTCAAAAACTGAGGGAAATATTTACG 57.104 34.615 4.30 0.00 46.89 3.18
300 301 7.309920 TCAAAAACTGAGGGAAATATTTACGC 58.690 34.615 4.30 5.68 0.00 4.42
301 302 5.830000 AAACTGAGGGAAATATTTACGCC 57.170 39.130 4.30 0.47 0.00 5.68
302 303 4.497291 ACTGAGGGAAATATTTACGCCA 57.503 40.909 4.30 4.18 0.00 5.69
303 304 4.196971 ACTGAGGGAAATATTTACGCCAC 58.803 43.478 4.30 0.00 0.00 5.01
304 305 4.080526 ACTGAGGGAAATATTTACGCCACT 60.081 41.667 4.30 0.00 0.00 4.00
305 306 4.850680 TGAGGGAAATATTTACGCCACTT 58.149 39.130 4.30 0.00 0.00 3.16
306 307 5.258051 TGAGGGAAATATTTACGCCACTTT 58.742 37.500 4.30 0.00 0.00 2.66
307 308 5.124776 TGAGGGAAATATTTACGCCACTTTG 59.875 40.000 4.30 0.00 0.00 2.77
308 309 4.109766 GGGAAATATTTACGCCACTTTGC 58.890 43.478 4.30 0.00 0.00 3.68
309 310 4.142249 GGGAAATATTTACGCCACTTTGCT 60.142 41.667 4.30 0.00 0.00 3.91
310 311 4.798387 GGAAATATTTACGCCACTTTGCTG 59.202 41.667 0.00 0.00 0.00 4.41
311 312 2.911819 TATTTACGCCACTTTGCTGC 57.088 45.000 0.00 0.00 0.00 5.25
312 313 0.958091 ATTTACGCCACTTTGCTGCA 59.042 45.000 0.00 0.00 0.00 4.41
313 314 0.958091 TTTACGCCACTTTGCTGCAT 59.042 45.000 1.84 0.00 0.00 3.96
314 315 0.521291 TTACGCCACTTTGCTGCATC 59.479 50.000 1.84 0.00 0.00 3.91
315 316 0.605050 TACGCCACTTTGCTGCATCA 60.605 50.000 1.84 0.00 0.00 3.07
316 317 1.443194 CGCCACTTTGCTGCATCAC 60.443 57.895 1.84 0.00 0.00 3.06
317 318 1.080298 GCCACTTTGCTGCATCACC 60.080 57.895 1.84 0.00 0.00 4.02
318 319 1.588082 CCACTTTGCTGCATCACCC 59.412 57.895 1.84 0.00 0.00 4.61
319 320 0.896940 CCACTTTGCTGCATCACCCT 60.897 55.000 1.84 0.00 0.00 4.34
320 321 0.963962 CACTTTGCTGCATCACCCTT 59.036 50.000 1.84 0.00 0.00 3.95
321 322 1.342174 CACTTTGCTGCATCACCCTTT 59.658 47.619 1.84 0.00 0.00 3.11
322 323 2.041701 ACTTTGCTGCATCACCCTTTT 58.958 42.857 1.84 0.00 0.00 2.27
323 324 2.036346 ACTTTGCTGCATCACCCTTTTC 59.964 45.455 1.84 0.00 0.00 2.29
324 325 1.999648 TTGCTGCATCACCCTTTTCT 58.000 45.000 1.84 0.00 0.00 2.52
325 326 1.538047 TGCTGCATCACCCTTTTCTC 58.462 50.000 0.00 0.00 0.00 2.87
326 327 1.074405 TGCTGCATCACCCTTTTCTCT 59.926 47.619 0.00 0.00 0.00 3.10
327 328 2.165998 GCTGCATCACCCTTTTCTCTT 58.834 47.619 0.00 0.00 0.00 2.85
328 329 2.560105 GCTGCATCACCCTTTTCTCTTT 59.440 45.455 0.00 0.00 0.00 2.52
329 330 3.758554 GCTGCATCACCCTTTTCTCTTTA 59.241 43.478 0.00 0.00 0.00 1.85
330 331 4.218417 GCTGCATCACCCTTTTCTCTTTAA 59.782 41.667 0.00 0.00 0.00 1.52
331 332 5.620879 GCTGCATCACCCTTTTCTCTTTAAG 60.621 44.000 0.00 0.00 0.00 1.85
332 333 4.766891 TGCATCACCCTTTTCTCTTTAAGG 59.233 41.667 0.00 0.00 40.50 2.69
349 350 4.868195 GGAAACCAACGCATGCTC 57.132 55.556 17.13 4.11 0.00 4.26
350 351 1.956043 GGAAACCAACGCATGCTCA 59.044 52.632 17.13 0.00 0.00 4.26
351 352 0.313672 GGAAACCAACGCATGCTCAA 59.686 50.000 17.13 0.00 0.00 3.02
352 353 1.666888 GGAAACCAACGCATGCTCAAG 60.667 52.381 17.13 2.03 0.00 3.02
353 354 1.266718 GAAACCAACGCATGCTCAAGA 59.733 47.619 17.13 0.00 0.00 3.02
354 355 0.877071 AACCAACGCATGCTCAAGAG 59.123 50.000 17.13 0.80 0.00 2.85
355 356 0.957395 ACCAACGCATGCTCAAGAGG 60.957 55.000 17.13 10.99 0.00 3.69
356 357 0.957395 CCAACGCATGCTCAAGAGGT 60.957 55.000 17.13 0.71 0.00 3.85
357 358 1.675714 CCAACGCATGCTCAAGAGGTA 60.676 52.381 17.13 0.00 0.00 3.08
358 359 1.662629 CAACGCATGCTCAAGAGGTAG 59.337 52.381 17.13 0.00 0.00 3.18
359 360 0.460987 ACGCATGCTCAAGAGGTAGC 60.461 55.000 17.13 0.00 39.25 3.58
381 382 4.348656 CATGCATCGACAAGATCCTTTTG 58.651 43.478 0.00 0.00 37.52 2.44
395 396 5.482878 AGATCCTTTTGATGCTGACCAATTT 59.517 36.000 0.00 0.00 32.41 1.82
453 456 7.360361 ACCGTTGCTAGTTTAAATCTTTGAAG 58.640 34.615 0.00 0.00 0.00 3.02
524 528 1.403382 GGGGTCTTACGGAAACTCGTC 60.403 57.143 0.00 0.00 42.82 4.20
537 541 4.995487 GGAAACTCGTCTAAGTTTGGTCAT 59.005 41.667 6.74 0.00 46.69 3.06
552 556 2.301583 TGGTCATGGTCATCTCGAAACA 59.698 45.455 0.00 0.00 0.00 2.83
553 557 3.244387 TGGTCATGGTCATCTCGAAACAA 60.244 43.478 0.00 0.00 0.00 2.83
579 583 8.406172 AGTCAACAACAACATGAAAATGTTAC 57.594 30.769 0.00 5.55 42.32 2.50
588 592 8.031864 ACAACATGAAAATGTTACAAGAACACA 58.968 29.630 0.00 0.00 42.32 3.72
627 631 6.378280 ACAAAGTCAGGTTTTGATGTTTCTCT 59.622 34.615 4.87 0.00 38.29 3.10
641 645 1.593196 TTCTCTGCTTGTTTCACCCG 58.407 50.000 0.00 0.00 0.00 5.28
650 654 1.749258 GTTTCACCCGCTGGATCCC 60.749 63.158 9.90 0.00 34.81 3.85
662 666 1.140852 CTGGATCCCGCAACAATCCTA 59.859 52.381 9.90 0.00 39.78 2.94
674 678 5.448632 CGCAACAATCCTATGAAGGGTTAAC 60.449 44.000 0.00 0.00 44.97 2.01
681 685 6.630203 TCCTATGAAGGGTTAACTTTGCTA 57.370 37.500 5.42 0.00 43.84 3.49
694 698 9.471084 GGTTAACTTTGCTAGCTTGATTTTAAA 57.529 29.630 17.23 4.43 0.00 1.52
768 1102 5.032327 AGGGTTATCCTTCGGTTTGTATC 57.968 43.478 0.00 0.00 45.47 2.24
800 1134 8.696410 AAAATCAATTAATAACGGCGATGTTT 57.304 26.923 16.62 0.00 33.32 2.83
826 1160 5.218885 CGCCACAAAATGTTAAATGTGAGA 58.781 37.500 6.34 0.00 44.52 3.27
836 1170 4.025229 TGTTAAATGTGAGACGAAGCACAC 60.025 41.667 10.17 0.00 46.52 3.82
855 1189 3.768757 ACACATATTGTTGGATGGTTGGG 59.231 43.478 0.00 0.00 33.09 4.12
859 1193 0.114168 TTGTTGGATGGTTGGGAGGG 59.886 55.000 0.00 0.00 0.00 4.30
883 1217 1.428869 AGTTCAAGTCCTGGTGCTCT 58.571 50.000 0.00 0.00 0.00 4.09
893 1227 3.760684 GTCCTGGTGCTCTCATTTTCATT 59.239 43.478 0.00 0.00 0.00 2.57
920 1254 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
980 1322 3.489180 ACTCACGTATATATGAGCGCC 57.511 47.619 2.29 0.00 45.23 6.53
991 1333 1.656652 ATGAGCGCCTGTGATTGTAC 58.343 50.000 2.29 0.00 0.00 2.90
995 1337 1.298157 GCGCCTGTGATTGTACTGCA 61.298 55.000 0.00 0.00 0.00 4.41
1008 1351 9.282247 GTGATTGTACTGCATTCTAGAAAAATG 57.718 33.333 9.71 4.72 37.21 2.32
1038 1381 9.932207 AATGTCAGATTATTTGAAAAATGCTGA 57.068 25.926 0.00 0.00 0.00 4.26
1039 1382 9.932207 ATGTCAGATTATTTGAAAAATGCTGAA 57.068 25.926 12.28 7.28 32.42 3.02
1040 1383 9.932207 TGTCAGATTATTTGAAAAATGCTGAAT 57.068 25.926 12.28 0.08 32.42 2.57
1048 1391 6.864360 TTGAAAAATGCTGAATTTTGAGGG 57.136 33.333 7.10 0.00 45.73 4.30
1049 1392 5.307204 TGAAAAATGCTGAATTTTGAGGGG 58.693 37.500 7.10 0.00 45.73 4.79
1050 1393 4.980339 AAAATGCTGAATTTTGAGGGGT 57.020 36.364 5.54 0.00 44.94 4.95
1051 1394 4.980339 AAATGCTGAATTTTGAGGGGTT 57.020 36.364 0.00 0.00 34.72 4.11
1052 1395 4.980339 AATGCTGAATTTTGAGGGGTTT 57.020 36.364 0.00 0.00 0.00 3.27
1053 1396 4.980339 ATGCTGAATTTTGAGGGGTTTT 57.020 36.364 0.00 0.00 0.00 2.43
1054 1397 4.070630 TGCTGAATTTTGAGGGGTTTTG 57.929 40.909 0.00 0.00 0.00 2.44
1055 1398 3.708631 TGCTGAATTTTGAGGGGTTTTGA 59.291 39.130 0.00 0.00 0.00 2.69
1056 1399 4.163078 TGCTGAATTTTGAGGGGTTTTGAA 59.837 37.500 0.00 0.00 0.00 2.69
1057 1400 5.122519 GCTGAATTTTGAGGGGTTTTGAAA 58.877 37.500 0.00 0.00 0.00 2.69
1058 1401 5.588246 GCTGAATTTTGAGGGGTTTTGAAAA 59.412 36.000 0.00 0.00 0.00 2.29
1059 1402 6.094742 GCTGAATTTTGAGGGGTTTTGAAAAA 59.905 34.615 0.00 0.00 0.00 1.94
1119 1466 2.345880 GAATAGTCGCCCGGCTCGAA 62.346 60.000 16.75 5.16 37.73 3.71
1120 1467 1.745320 AATAGTCGCCCGGCTCGAAT 61.745 55.000 18.31 18.31 37.73 3.34
1121 1468 1.745320 ATAGTCGCCCGGCTCGAATT 61.745 55.000 19.19 12.77 37.73 2.17
1122 1469 1.952102 TAGTCGCCCGGCTCGAATTT 61.952 55.000 19.19 10.83 37.73 1.82
1123 1470 2.817834 TCGCCCGGCTCGAATTTG 60.818 61.111 13.50 0.00 32.53 2.32
1161 1509 2.108700 CCGTCTCGTTTTGCAAAGTTG 58.891 47.619 12.41 6.52 0.00 3.16
1181 1532 0.533755 CCATGGAGTTGAGATCGGGC 60.534 60.000 5.56 0.00 0.00 6.13
1221 1575 1.003839 CAGCGGCTAGGTCAACCAA 60.004 57.895 0.26 0.00 38.89 3.67
1231 1585 4.243008 TCAACCAAGCGGCGGTGA 62.243 61.111 14.17 1.39 36.67 4.02
1503 1872 2.989824 CTGACCGGGTCGACACCT 60.990 66.667 21.52 0.00 43.22 4.00
2167 6677 8.982685 GTGATATATGTATATCCCGCTCAATTG 58.017 37.037 14.38 0.00 42.35 2.32
2188 6699 3.694072 TGTTTTTCCAGGACTTGTCTGTG 59.306 43.478 0.00 0.00 0.00 3.66
2712 8431 3.755112 TCTTCGGTGGAATGTTGTGTA 57.245 42.857 0.00 0.00 0.00 2.90
2764 8489 2.727777 TGTATGATTAGCGTGCTCGTC 58.272 47.619 10.18 2.47 39.49 4.20
2853 8588 8.064222 CCAATTATAGAGTTTGTGCTTGTATCG 58.936 37.037 0.00 0.00 0.00 2.92
2854 8589 8.604035 CAATTATAGAGTTTGTGCTTGTATCGT 58.396 33.333 0.00 0.00 0.00 3.73
2855 8590 7.751047 TTATAGAGTTTGTGCTTGTATCGTC 57.249 36.000 0.00 0.00 0.00 4.20
2856 8591 3.326747 AGAGTTTGTGCTTGTATCGTCC 58.673 45.455 0.00 0.00 0.00 4.79
2862 8597 4.209307 TGTGCTTGTATCGTCCCAATTA 57.791 40.909 0.00 0.00 0.00 1.40
2863 8598 4.776349 TGTGCTTGTATCGTCCCAATTAT 58.224 39.130 0.00 0.00 0.00 1.28
3245 9016 9.424319 CTTCTTTTAGCTAATTGACTCACAGTA 57.576 33.333 7.08 0.00 0.00 2.74
3261 9032 3.309682 CACAGTAACAGTCAACACACAGG 59.690 47.826 0.00 0.00 0.00 4.00
3273 9044 1.154197 CACACAGGCTGACACATGAG 58.846 55.000 23.66 3.18 0.00 2.90
3276 9047 0.327259 ACAGGCTGACACATGAGCAT 59.673 50.000 23.66 0.00 36.90 3.79
3277 9048 1.271762 ACAGGCTGACACATGAGCATT 60.272 47.619 23.66 0.00 36.90 3.56
3279 9050 1.003928 AGGCTGACACATGAGCATTCA 59.996 47.619 0.00 0.00 36.90 2.57
3280 9051 1.814394 GGCTGACACATGAGCATTCAA 59.186 47.619 0.00 0.00 36.78 2.69
3281 9052 2.159421 GGCTGACACATGAGCATTCAAG 60.159 50.000 0.00 0.00 36.78 3.02
3282 9053 2.745821 GCTGACACATGAGCATTCAAGA 59.254 45.455 0.00 0.00 36.78 3.02
3283 9054 3.189910 GCTGACACATGAGCATTCAAGAA 59.810 43.478 0.00 0.00 36.78 2.52
3284 9055 4.720090 CTGACACATGAGCATTCAAGAAC 58.280 43.478 0.00 0.00 36.78 3.01
3285 9056 4.136051 TGACACATGAGCATTCAAGAACA 58.864 39.130 0.00 0.00 36.78 3.18
3286 9057 4.023792 TGACACATGAGCATTCAAGAACAC 60.024 41.667 0.00 0.00 36.78 3.32
3287 9058 3.254166 ACACATGAGCATTCAAGAACACC 59.746 43.478 0.00 0.00 36.78 4.16
3288 9059 3.253921 CACATGAGCATTCAAGAACACCA 59.746 43.478 0.00 0.00 36.78 4.17
3289 9060 4.082408 CACATGAGCATTCAAGAACACCAT 60.082 41.667 0.00 0.00 36.78 3.55
3290 9061 5.124297 CACATGAGCATTCAAGAACACCATA 59.876 40.000 0.00 0.00 36.78 2.74
3291 9062 5.711506 ACATGAGCATTCAAGAACACCATAA 59.288 36.000 0.00 0.00 36.78 1.90
3394 9194 2.754472 TGATCACAACTCACAAGGACG 58.246 47.619 0.00 0.00 0.00 4.79
3712 9517 7.953752 AGCTCTCTGTTTACTGTTTAGTTAGT 58.046 34.615 0.00 0.00 38.36 2.24
3807 9612 2.790791 CCCAGGTCTCTGCTAGCGG 61.791 68.421 17.99 17.99 39.61 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.625849 CAGGGGCCATAGGTTTCACT 59.374 55.000 4.39 0.00 0.00 3.41
1 2 0.395724 CCAGGGGCCATAGGTTTCAC 60.396 60.000 4.39 0.00 0.00 3.18
2 3 1.580066 CCCAGGGGCCATAGGTTTCA 61.580 60.000 4.39 0.00 0.00 2.69
3 4 1.230212 CCCAGGGGCCATAGGTTTC 59.770 63.158 4.39 0.00 0.00 2.78
4 5 1.546460 ACCCAGGGGCCATAGGTTT 60.546 57.895 11.37 0.00 39.32 3.27
5 6 2.006991 GACCCAGGGGCCATAGGTT 61.007 63.158 10.22 0.00 39.32 3.50
6 7 1.609408 TAGACCCAGGGGCCATAGGT 61.609 60.000 8.35 8.35 39.32 3.08
7 8 0.178861 ATAGACCCAGGGGCCATAGG 60.179 60.000 8.20 2.49 39.32 2.57
8 9 1.747444 AATAGACCCAGGGGCCATAG 58.253 55.000 8.20 0.00 39.32 2.23
9 10 2.222461 AAATAGACCCAGGGGCCATA 57.778 50.000 8.20 0.00 39.32 2.74
10 11 1.217942 GAAAATAGACCCAGGGGCCAT 59.782 52.381 8.20 0.00 39.32 4.40
11 12 0.629058 GAAAATAGACCCAGGGGCCA 59.371 55.000 8.20 0.00 39.32 5.36
12 13 0.106167 GGAAAATAGACCCAGGGGCC 60.106 60.000 8.20 0.00 39.32 5.80
13 14 0.629058 TGGAAAATAGACCCAGGGGC 59.371 55.000 11.37 6.92 39.32 5.80
14 15 2.513738 TGATGGAAAATAGACCCAGGGG 59.486 50.000 11.37 6.87 42.03 4.79
15 16 3.951563 TGATGGAAAATAGACCCAGGG 57.048 47.619 2.85 2.85 32.90 4.45
16 17 9.759473 ATTAATATGATGGAAAATAGACCCAGG 57.241 33.333 0.00 0.00 32.90 4.45
22 23 9.890629 CGGGAGATTAATATGATGGAAAATAGA 57.109 33.333 0.00 0.00 0.00 1.98
23 24 9.672673 ACGGGAGATTAATATGATGGAAAATAG 57.327 33.333 0.00 0.00 0.00 1.73
24 25 9.667107 GACGGGAGATTAATATGATGGAAAATA 57.333 33.333 0.00 0.00 0.00 1.40
25 26 8.163408 TGACGGGAGATTAATATGATGGAAAAT 58.837 33.333 0.00 0.00 0.00 1.82
26 27 7.513856 TGACGGGAGATTAATATGATGGAAAA 58.486 34.615 0.00 0.00 0.00 2.29
27 28 7.073457 TGACGGGAGATTAATATGATGGAAA 57.927 36.000 0.00 0.00 0.00 3.13
28 29 6.680148 TGACGGGAGATTAATATGATGGAA 57.320 37.500 0.00 0.00 0.00 3.53
29 30 6.270000 AGTTGACGGGAGATTAATATGATGGA 59.730 38.462 0.00 0.00 0.00 3.41
30 31 6.467677 AGTTGACGGGAGATTAATATGATGG 58.532 40.000 0.00 0.00 0.00 3.51
31 32 7.276658 GCTAGTTGACGGGAGATTAATATGATG 59.723 40.741 0.00 0.00 0.00 3.07
32 33 7.179338 AGCTAGTTGACGGGAGATTAATATGAT 59.821 37.037 0.00 0.00 0.00 2.45
33 34 6.493802 AGCTAGTTGACGGGAGATTAATATGA 59.506 38.462 0.00 0.00 0.00 2.15
34 35 6.692486 AGCTAGTTGACGGGAGATTAATATG 58.308 40.000 0.00 0.00 0.00 1.78
35 36 6.919775 AGCTAGTTGACGGGAGATTAATAT 57.080 37.500 0.00 0.00 0.00 1.28
36 37 7.002879 AGTAGCTAGTTGACGGGAGATTAATA 58.997 38.462 0.00 0.00 0.00 0.98
37 38 5.834204 AGTAGCTAGTTGACGGGAGATTAAT 59.166 40.000 0.00 0.00 0.00 1.40
38 39 5.198965 AGTAGCTAGTTGACGGGAGATTAA 58.801 41.667 0.00 0.00 0.00 1.40
39 40 4.789807 AGTAGCTAGTTGACGGGAGATTA 58.210 43.478 0.00 0.00 0.00 1.75
40 41 3.633418 AGTAGCTAGTTGACGGGAGATT 58.367 45.455 0.00 0.00 0.00 2.40
41 42 3.300239 AGTAGCTAGTTGACGGGAGAT 57.700 47.619 0.00 0.00 0.00 2.75
42 43 2.803030 AGTAGCTAGTTGACGGGAGA 57.197 50.000 0.00 0.00 0.00 3.71
43 44 3.870633 AAAGTAGCTAGTTGACGGGAG 57.129 47.619 14.55 0.00 0.00 4.30
44 45 5.449588 CGATAAAAGTAGCTAGTTGACGGGA 60.450 44.000 14.55 0.00 0.00 5.14
45 46 4.738740 CGATAAAAGTAGCTAGTTGACGGG 59.261 45.833 14.55 1.76 0.00 5.28
46 47 5.338365 ACGATAAAAGTAGCTAGTTGACGG 58.662 41.667 14.55 6.39 0.00 4.79
47 48 7.185453 ACTACGATAAAAGTAGCTAGTTGACG 58.815 38.462 14.55 17.22 43.86 4.35
48 49 8.908172 AACTACGATAAAAGTAGCTAGTTGAC 57.092 34.615 14.55 6.05 43.86 3.18
55 56 9.983804 GCAAAATAAACTACGATAAAAGTAGCT 57.016 29.630 0.00 0.00 43.86 3.32
56 57 9.763465 TGCAAAATAAACTACGATAAAAGTAGC 57.237 29.630 3.58 0.00 43.86 3.58
132 133 9.709495 GCAAAAGTCAGATCTGATAGAGATAAT 57.291 33.333 27.51 0.00 41.91 1.28
133 134 8.699130 TGCAAAAGTCAGATCTGATAGAGATAA 58.301 33.333 27.51 8.69 41.91 1.75
134 135 8.242729 TGCAAAAGTCAGATCTGATAGAGATA 57.757 34.615 27.51 10.63 41.91 1.98
135 136 7.122138 TGCAAAAGTCAGATCTGATAGAGAT 57.878 36.000 27.51 10.19 44.78 2.75
136 137 6.535963 TGCAAAAGTCAGATCTGATAGAGA 57.464 37.500 27.51 1.79 42.18 3.10
137 138 6.817641 ACTTGCAAAAGTCAGATCTGATAGAG 59.182 38.462 27.51 16.99 42.18 2.43
138 139 6.592994 CACTTGCAAAAGTCAGATCTGATAGA 59.407 38.462 27.51 2.99 42.18 1.98
139 140 6.183360 CCACTTGCAAAAGTCAGATCTGATAG 60.183 42.308 27.51 16.05 42.18 2.08
140 141 5.645067 CCACTTGCAAAAGTCAGATCTGATA 59.355 40.000 27.51 4.20 42.18 2.15
141 142 4.458295 CCACTTGCAAAAGTCAGATCTGAT 59.542 41.667 27.51 10.85 42.18 2.90
142 143 3.817084 CCACTTGCAAAAGTCAGATCTGA 59.183 43.478 21.67 21.67 37.24 3.27
143 144 3.611057 GCCACTTGCAAAAGTCAGATCTG 60.611 47.826 17.07 17.07 40.77 2.90
144 145 2.555757 GCCACTTGCAAAAGTCAGATCT 59.444 45.455 0.00 0.00 40.77 2.75
145 146 2.352127 GGCCACTTGCAAAAGTCAGATC 60.352 50.000 0.00 0.00 43.89 2.75
146 147 1.615392 GGCCACTTGCAAAAGTCAGAT 59.385 47.619 0.00 0.00 43.89 2.90
147 148 1.032014 GGCCACTTGCAAAAGTCAGA 58.968 50.000 0.00 0.00 43.89 3.27
148 149 0.746063 TGGCCACTTGCAAAAGTCAG 59.254 50.000 0.00 0.00 43.89 3.51
149 150 1.136695 CTTGGCCACTTGCAAAAGTCA 59.863 47.619 3.88 0.00 43.89 3.41
150 151 1.408702 TCTTGGCCACTTGCAAAAGTC 59.591 47.619 3.88 0.00 43.89 3.01
151 152 1.484038 TCTTGGCCACTTGCAAAAGT 58.516 45.000 3.88 0.00 43.89 2.66
152 153 2.476821 CTTCTTGGCCACTTGCAAAAG 58.523 47.619 3.88 0.00 43.89 2.27
153 154 1.138661 CCTTCTTGGCCACTTGCAAAA 59.861 47.619 3.88 0.00 43.89 2.44
154 155 0.752054 CCTTCTTGGCCACTTGCAAA 59.248 50.000 3.88 0.00 43.89 3.68
155 156 1.114722 CCCTTCTTGGCCACTTGCAA 61.115 55.000 3.88 0.00 43.89 4.08
156 157 1.531365 CCCTTCTTGGCCACTTGCA 60.531 57.895 3.88 0.00 43.89 4.08
157 158 0.613012 ATCCCTTCTTGGCCACTTGC 60.613 55.000 3.88 0.00 40.16 4.01
158 159 1.547372 CAATCCCTTCTTGGCCACTTG 59.453 52.381 3.88 0.00 0.00 3.16
159 160 1.428912 TCAATCCCTTCTTGGCCACTT 59.571 47.619 3.88 0.00 0.00 3.16
160 161 1.075601 TCAATCCCTTCTTGGCCACT 58.924 50.000 3.88 0.00 0.00 4.00
161 162 1.177401 GTCAATCCCTTCTTGGCCAC 58.823 55.000 3.88 0.00 0.00 5.01
162 163 0.776810 TGTCAATCCCTTCTTGGCCA 59.223 50.000 0.00 0.00 0.00 5.36
163 164 1.546029 GTTGTCAATCCCTTCTTGGCC 59.454 52.381 0.00 0.00 0.00 5.36
164 165 1.546029 GGTTGTCAATCCCTTCTTGGC 59.454 52.381 0.00 0.00 0.00 4.52
165 166 2.171003 GGGTTGTCAATCCCTTCTTGG 58.829 52.381 3.15 0.00 40.48 3.61
166 167 2.171003 GGGGTTGTCAATCCCTTCTTG 58.829 52.381 24.72 0.00 43.00 3.02
167 168 2.604912 GGGGTTGTCAATCCCTTCTT 57.395 50.000 24.72 0.00 43.00 2.52
172 173 2.949644 CGATAAAGGGGTTGTCAATCCC 59.050 50.000 24.64 24.64 42.73 3.85
173 174 2.357952 GCGATAAAGGGGTTGTCAATCC 59.642 50.000 6.29 6.29 0.00 3.01
174 175 2.031683 CGCGATAAAGGGGTTGTCAATC 59.968 50.000 0.00 0.00 0.00 2.67
175 176 2.014128 CGCGATAAAGGGGTTGTCAAT 58.986 47.619 0.00 0.00 0.00 2.57
176 177 1.270947 ACGCGATAAAGGGGTTGTCAA 60.271 47.619 15.93 0.00 0.00 3.18
177 178 0.322322 ACGCGATAAAGGGGTTGTCA 59.678 50.000 15.93 0.00 0.00 3.58
178 179 1.129811 CAACGCGATAAAGGGGTTGTC 59.870 52.381 15.93 0.00 46.81 3.18
179 180 1.161843 CAACGCGATAAAGGGGTTGT 58.838 50.000 15.93 0.00 46.81 3.32
180 181 3.988459 CAACGCGATAAAGGGGTTG 57.012 52.632 15.93 0.00 46.85 3.77
181 182 0.037160 ACCAACGCGATAAAGGGGTT 59.963 50.000 15.93 0.00 40.63 4.11
182 183 0.037160 AACCAACGCGATAAAGGGGT 59.963 50.000 15.93 0.15 0.00 4.95
183 184 0.450184 CAACCAACGCGATAAAGGGG 59.550 55.000 15.93 0.00 0.00 4.79
184 185 0.179174 GCAACCAACGCGATAAAGGG 60.179 55.000 15.93 7.02 0.00 3.95
185 186 0.519519 TGCAACCAACGCGATAAAGG 59.480 50.000 15.93 9.35 0.00 3.11
186 187 2.241722 CTTGCAACCAACGCGATAAAG 58.758 47.619 15.93 0.00 0.00 1.85
187 188 1.068885 CCTTGCAACCAACGCGATAAA 60.069 47.619 15.93 0.00 0.00 1.40
188 189 0.519519 CCTTGCAACCAACGCGATAA 59.480 50.000 15.93 0.00 0.00 1.75
189 190 0.604243 ACCTTGCAACCAACGCGATA 60.604 50.000 15.93 0.00 0.00 2.92
190 191 1.452145 AACCTTGCAACCAACGCGAT 61.452 50.000 15.93 0.00 0.00 4.58
191 192 2.054140 GAACCTTGCAACCAACGCGA 62.054 55.000 15.93 0.00 0.00 5.87
192 193 1.657181 GAACCTTGCAACCAACGCG 60.657 57.895 3.53 3.53 0.00 6.01
193 194 0.102300 AAGAACCTTGCAACCAACGC 59.898 50.000 0.00 0.00 0.00 4.84
194 195 3.701532 TTAAGAACCTTGCAACCAACG 57.298 42.857 0.00 0.00 0.00 4.10
195 196 5.356426 ACAATTAAGAACCTTGCAACCAAC 58.644 37.500 0.00 0.00 0.00 3.77
196 197 5.606348 ACAATTAAGAACCTTGCAACCAA 57.394 34.783 0.00 0.00 0.00 3.67
197 198 5.606348 AACAATTAAGAACCTTGCAACCA 57.394 34.783 0.00 0.00 0.00 3.67
198 199 5.815222 ACAAACAATTAAGAACCTTGCAACC 59.185 36.000 0.00 0.00 0.00 3.77
199 200 6.704819 CACAAACAATTAAGAACCTTGCAAC 58.295 36.000 0.00 0.00 0.00 4.17
200 201 5.293079 GCACAAACAATTAAGAACCTTGCAA 59.707 36.000 0.00 0.00 0.00 4.08
201 202 4.808364 GCACAAACAATTAAGAACCTTGCA 59.192 37.500 0.00 0.00 0.00 4.08
202 203 4.808364 TGCACAAACAATTAAGAACCTTGC 59.192 37.500 0.00 0.00 0.00 4.01
203 204 6.479660 ACATGCACAAACAATTAAGAACCTTG 59.520 34.615 0.00 0.00 0.00 3.61
204 205 6.581712 ACATGCACAAACAATTAAGAACCTT 58.418 32.000 0.00 0.00 0.00 3.50
205 206 6.160576 ACATGCACAAACAATTAAGAACCT 57.839 33.333 0.00 0.00 0.00 3.50
206 207 7.145323 AGTACATGCACAAACAATTAAGAACC 58.855 34.615 0.00 0.00 0.00 3.62
207 208 9.329913 CTAGTACATGCACAAACAATTAAGAAC 57.670 33.333 0.00 0.00 0.00 3.01
208 209 8.511321 CCTAGTACATGCACAAACAATTAAGAA 58.489 33.333 0.00 0.00 0.00 2.52
209 210 7.120579 CCCTAGTACATGCACAAACAATTAAGA 59.879 37.037 0.00 0.00 0.00 2.10
210 211 7.120579 TCCCTAGTACATGCACAAACAATTAAG 59.879 37.037 0.00 0.00 0.00 1.85
211 212 6.943146 TCCCTAGTACATGCACAAACAATTAA 59.057 34.615 0.00 0.00 0.00 1.40
212 213 6.477253 TCCCTAGTACATGCACAAACAATTA 58.523 36.000 0.00 0.00 0.00 1.40
213 214 5.321102 TCCCTAGTACATGCACAAACAATT 58.679 37.500 0.00 0.00 0.00 2.32
214 215 4.917385 TCCCTAGTACATGCACAAACAAT 58.083 39.130 0.00 0.00 0.00 2.71
215 216 4.359434 TCCCTAGTACATGCACAAACAA 57.641 40.909 0.00 0.00 0.00 2.83
216 217 4.568072 ATCCCTAGTACATGCACAAACA 57.432 40.909 0.00 0.00 0.00 2.83
217 218 5.640732 CAAATCCCTAGTACATGCACAAAC 58.359 41.667 0.00 0.00 0.00 2.93
218 219 4.157656 GCAAATCCCTAGTACATGCACAAA 59.842 41.667 0.00 0.00 32.80 2.83
219 220 3.694072 GCAAATCCCTAGTACATGCACAA 59.306 43.478 0.00 0.00 32.80 3.33
220 221 3.278574 GCAAATCCCTAGTACATGCACA 58.721 45.455 0.00 0.00 32.80 4.57
221 222 2.287915 CGCAAATCCCTAGTACATGCAC 59.712 50.000 0.00 0.00 32.80 4.57
222 223 2.093181 ACGCAAATCCCTAGTACATGCA 60.093 45.455 0.00 0.00 32.80 3.96
223 224 2.287915 CACGCAAATCCCTAGTACATGC 59.712 50.000 0.00 0.00 0.00 4.06
224 225 3.531538 ACACGCAAATCCCTAGTACATG 58.468 45.455 0.00 0.00 0.00 3.21
225 226 3.906720 ACACGCAAATCCCTAGTACAT 57.093 42.857 0.00 0.00 0.00 2.29
226 227 3.429822 GCTACACGCAAATCCCTAGTACA 60.430 47.826 0.00 0.00 38.92 2.90
227 228 3.121544 GCTACACGCAAATCCCTAGTAC 58.878 50.000 0.00 0.00 38.92 2.73
228 229 2.101917 GGCTACACGCAAATCCCTAGTA 59.898 50.000 0.00 0.00 41.67 1.82
229 230 1.134491 GGCTACACGCAAATCCCTAGT 60.134 52.381 0.00 0.00 41.67 2.57
230 231 1.139058 AGGCTACACGCAAATCCCTAG 59.861 52.381 0.00 0.00 41.67 3.02
231 232 1.138266 GAGGCTACACGCAAATCCCTA 59.862 52.381 0.00 0.00 41.67 3.53
232 233 0.107654 GAGGCTACACGCAAATCCCT 60.108 55.000 0.00 0.00 41.67 4.20
233 234 1.095807 GGAGGCTACACGCAAATCCC 61.096 60.000 0.00 0.00 41.67 3.85
234 235 0.107654 AGGAGGCTACACGCAAATCC 60.108 55.000 0.00 0.00 41.67 3.01
235 236 2.159085 AGTAGGAGGCTACACGCAAATC 60.159 50.000 0.00 0.00 41.67 2.17
236 237 1.831736 AGTAGGAGGCTACACGCAAAT 59.168 47.619 0.00 0.00 41.67 2.32
237 238 1.067142 CAGTAGGAGGCTACACGCAAA 60.067 52.381 0.00 0.00 41.67 3.68
238 239 0.530744 CAGTAGGAGGCTACACGCAA 59.469 55.000 0.00 0.00 41.67 4.85
239 240 1.320344 CCAGTAGGAGGCTACACGCA 61.320 60.000 0.00 0.00 37.48 5.24
240 241 1.035932 TCCAGTAGGAGGCTACACGC 61.036 60.000 0.00 0.00 39.61 5.34
241 242 3.186345 TCCAGTAGGAGGCTACACG 57.814 57.895 0.00 0.00 39.61 4.49
251 252 7.072263 AGAACCAAGATATCAATCCAGTAGG 57.928 40.000 5.32 0.00 31.98 3.18
252 253 7.730084 TGAGAACCAAGATATCAATCCAGTAG 58.270 38.462 5.32 0.00 31.98 2.57
253 254 7.675161 TGAGAACCAAGATATCAATCCAGTA 57.325 36.000 5.32 0.00 31.98 2.74
254 255 6.566079 TGAGAACCAAGATATCAATCCAGT 57.434 37.500 5.32 0.00 31.98 4.00
255 256 7.870509 TTTGAGAACCAAGATATCAATCCAG 57.129 36.000 5.32 0.00 35.94 3.86
256 257 8.522830 GTTTTTGAGAACCAAGATATCAATCCA 58.477 33.333 5.32 0.00 35.94 3.41
257 258 8.743714 AGTTTTTGAGAACCAAGATATCAATCC 58.256 33.333 5.32 0.00 35.94 3.01
258 259 9.565213 CAGTTTTTGAGAACCAAGATATCAATC 57.435 33.333 5.32 0.00 35.94 2.67
259 260 9.300681 TCAGTTTTTGAGAACCAAGATATCAAT 57.699 29.630 5.32 0.00 35.94 2.57
260 261 8.690203 TCAGTTTTTGAGAACCAAGATATCAA 57.310 30.769 5.32 0.00 35.94 2.57
275 276 7.309920 GCGTAAATATTTCCCTCAGTTTTTGA 58.690 34.615 3.39 0.00 0.00 2.69
276 277 6.530181 GGCGTAAATATTTCCCTCAGTTTTTG 59.470 38.462 3.39 0.00 0.00 2.44
277 278 6.209788 TGGCGTAAATATTTCCCTCAGTTTTT 59.790 34.615 3.39 0.00 0.00 1.94
278 279 5.712917 TGGCGTAAATATTTCCCTCAGTTTT 59.287 36.000 3.39 0.00 0.00 2.43
279 280 5.124936 GTGGCGTAAATATTTCCCTCAGTTT 59.875 40.000 3.39 0.00 0.00 2.66
280 281 4.638865 GTGGCGTAAATATTTCCCTCAGTT 59.361 41.667 3.39 0.00 0.00 3.16
281 282 4.080526 AGTGGCGTAAATATTTCCCTCAGT 60.081 41.667 3.39 0.83 0.00 3.41
282 283 4.451900 AGTGGCGTAAATATTTCCCTCAG 58.548 43.478 3.39 0.00 0.00 3.35
283 284 4.497291 AGTGGCGTAAATATTTCCCTCA 57.503 40.909 3.39 0.00 0.00 3.86
284 285 5.578776 CAAAGTGGCGTAAATATTTCCCTC 58.421 41.667 3.39 5.42 0.00 4.30
285 286 4.142249 GCAAAGTGGCGTAAATATTTCCCT 60.142 41.667 3.39 0.00 0.00 4.20
286 287 4.109766 GCAAAGTGGCGTAAATATTTCCC 58.890 43.478 3.39 4.92 0.00 3.97
287 288 4.798387 CAGCAAAGTGGCGTAAATATTTCC 59.202 41.667 3.39 0.65 39.27 3.13
288 289 4.265320 GCAGCAAAGTGGCGTAAATATTTC 59.735 41.667 3.39 0.00 39.27 2.17
289 290 4.173256 GCAGCAAAGTGGCGTAAATATTT 58.827 39.130 5.89 5.89 39.27 1.40
290 291 3.192422 TGCAGCAAAGTGGCGTAAATATT 59.808 39.130 0.00 0.00 39.27 1.28
291 292 2.752354 TGCAGCAAAGTGGCGTAAATAT 59.248 40.909 0.00 0.00 39.27 1.28
292 293 2.155279 TGCAGCAAAGTGGCGTAAATA 58.845 42.857 0.00 0.00 39.27 1.40
293 294 0.958091 TGCAGCAAAGTGGCGTAAAT 59.042 45.000 0.00 0.00 39.27 1.40
294 295 0.958091 ATGCAGCAAAGTGGCGTAAA 59.042 45.000 0.00 0.00 39.27 2.01
295 296 0.521291 GATGCAGCAAAGTGGCGTAA 59.479 50.000 0.00 0.00 39.27 3.18
296 297 0.605050 TGATGCAGCAAAGTGGCGTA 60.605 50.000 0.00 0.00 39.27 4.42
297 298 1.898094 TGATGCAGCAAAGTGGCGT 60.898 52.632 0.00 0.00 39.27 5.68
298 299 1.443194 GTGATGCAGCAAAGTGGCG 60.443 57.895 6.05 0.00 39.27 5.69
299 300 1.080298 GGTGATGCAGCAAAGTGGC 60.080 57.895 6.05 0.00 0.00 5.01
300 301 0.896940 AGGGTGATGCAGCAAAGTGG 60.897 55.000 6.05 0.00 33.07 4.00
301 302 0.963962 AAGGGTGATGCAGCAAAGTG 59.036 50.000 6.05 0.00 33.07 3.16
302 303 1.708341 AAAGGGTGATGCAGCAAAGT 58.292 45.000 6.05 0.00 33.07 2.66
303 304 2.298163 AGAAAAGGGTGATGCAGCAAAG 59.702 45.455 6.05 0.00 33.07 2.77
304 305 2.297033 GAGAAAAGGGTGATGCAGCAAA 59.703 45.455 6.05 0.00 33.07 3.68
305 306 1.888512 GAGAAAAGGGTGATGCAGCAA 59.111 47.619 6.05 0.00 33.07 3.91
306 307 1.074405 AGAGAAAAGGGTGATGCAGCA 59.926 47.619 0.00 0.00 33.07 4.41
307 308 1.831580 AGAGAAAAGGGTGATGCAGC 58.168 50.000 0.00 0.00 0.00 5.25
308 309 5.105997 CCTTAAAGAGAAAAGGGTGATGCAG 60.106 44.000 0.00 0.00 38.91 4.41
309 310 4.766891 CCTTAAAGAGAAAAGGGTGATGCA 59.233 41.667 0.00 0.00 38.91 3.96
310 311 5.316327 CCTTAAAGAGAAAAGGGTGATGC 57.684 43.478 0.00 0.00 38.91 3.91
317 318 6.513180 GTTGGTTTCCCTTAAAGAGAAAAGG 58.487 40.000 0.00 0.00 41.69 3.11
318 319 6.206498 CGTTGGTTTCCCTTAAAGAGAAAAG 58.794 40.000 0.00 0.00 31.71 2.27
319 320 5.450826 GCGTTGGTTTCCCTTAAAGAGAAAA 60.451 40.000 0.00 0.00 31.71 2.29
320 321 4.037089 GCGTTGGTTTCCCTTAAAGAGAAA 59.963 41.667 0.00 0.00 0.00 2.52
321 322 3.566742 GCGTTGGTTTCCCTTAAAGAGAA 59.433 43.478 0.00 0.00 0.00 2.87
322 323 3.143728 GCGTTGGTTTCCCTTAAAGAGA 58.856 45.455 0.00 0.00 0.00 3.10
323 324 2.882137 TGCGTTGGTTTCCCTTAAAGAG 59.118 45.455 0.00 0.00 0.00 2.85
324 325 2.933573 TGCGTTGGTTTCCCTTAAAGA 58.066 42.857 0.00 0.00 0.00 2.52
325 326 3.574614 CATGCGTTGGTTTCCCTTAAAG 58.425 45.455 0.00 0.00 0.00 1.85
326 327 2.288518 GCATGCGTTGGTTTCCCTTAAA 60.289 45.455 0.00 0.00 0.00 1.52
327 328 1.271102 GCATGCGTTGGTTTCCCTTAA 59.729 47.619 0.00 0.00 0.00 1.85
328 329 0.885196 GCATGCGTTGGTTTCCCTTA 59.115 50.000 0.00 0.00 0.00 2.69
329 330 0.827507 AGCATGCGTTGGTTTCCCTT 60.828 50.000 13.01 0.00 29.87 3.95
330 331 1.228552 AGCATGCGTTGGTTTCCCT 60.229 52.632 13.01 0.00 29.87 4.20
331 332 1.212751 GAGCATGCGTTGGTTTCCC 59.787 57.895 13.01 0.00 35.82 3.97
332 333 0.313672 TTGAGCATGCGTTGGTTTCC 59.686 50.000 13.01 0.00 35.82 3.13
333 334 1.266718 TCTTGAGCATGCGTTGGTTTC 59.733 47.619 13.01 2.75 35.82 2.78
334 335 1.267806 CTCTTGAGCATGCGTTGGTTT 59.732 47.619 13.01 0.00 35.82 3.27
335 336 0.877071 CTCTTGAGCATGCGTTGGTT 59.123 50.000 13.01 0.00 35.82 3.67
336 337 0.957395 CCTCTTGAGCATGCGTTGGT 60.957 55.000 13.01 0.00 39.22 3.67
337 338 0.957395 ACCTCTTGAGCATGCGTTGG 60.957 55.000 13.01 12.07 0.00 3.77
338 339 1.662629 CTACCTCTTGAGCATGCGTTG 59.337 52.381 13.01 4.40 0.00 4.10
339 340 2.009042 GCTACCTCTTGAGCATGCGTT 61.009 52.381 13.01 0.00 38.62 4.84
340 341 0.460987 GCTACCTCTTGAGCATGCGT 60.461 55.000 13.01 4.65 38.62 5.24
341 342 0.460811 TGCTACCTCTTGAGCATGCG 60.461 55.000 13.01 0.00 43.64 4.73
342 343 3.465990 TGCTACCTCTTGAGCATGC 57.534 52.632 10.51 10.51 43.64 4.06
346 347 1.872313 GATGCATGCTACCTCTTGAGC 59.128 52.381 20.33 0.00 39.25 4.26
347 348 2.133553 CGATGCATGCTACCTCTTGAG 58.866 52.381 20.33 0.00 0.00 3.02
348 349 1.756538 TCGATGCATGCTACCTCTTGA 59.243 47.619 20.33 2.80 0.00 3.02
349 350 1.863454 GTCGATGCATGCTACCTCTTG 59.137 52.381 20.33 0.37 0.00 3.02
350 351 1.482182 TGTCGATGCATGCTACCTCTT 59.518 47.619 20.33 0.00 0.00 2.85
351 352 1.114627 TGTCGATGCATGCTACCTCT 58.885 50.000 20.33 0.00 0.00 3.69
352 353 1.863454 CTTGTCGATGCATGCTACCTC 59.137 52.381 20.33 9.34 0.00 3.85
353 354 1.482182 TCTTGTCGATGCATGCTACCT 59.518 47.619 20.33 0.46 0.00 3.08
354 355 1.939974 TCTTGTCGATGCATGCTACC 58.060 50.000 20.33 6.85 0.00 3.18
355 356 2.478134 GGATCTTGTCGATGCATGCTAC 59.522 50.000 20.33 11.59 39.96 3.58
356 357 2.366590 AGGATCTTGTCGATGCATGCTA 59.633 45.455 20.33 5.73 42.39 3.49
357 358 1.140452 AGGATCTTGTCGATGCATGCT 59.860 47.619 20.33 4.11 42.39 3.79
358 359 1.590932 AGGATCTTGTCGATGCATGC 58.409 50.000 11.82 11.82 42.39 4.06
359 360 4.095334 TCAAAAGGATCTTGTCGATGCATG 59.905 41.667 2.46 0.00 42.39 4.06
360 361 4.264253 TCAAAAGGATCTTGTCGATGCAT 58.736 39.130 0.00 0.00 42.39 3.96
381 382 5.030295 CACATAACGAAATTGGTCAGCATC 58.970 41.667 0.00 0.00 0.00 3.91
395 396 5.294799 ACACTAGCAAAACAACACATAACGA 59.705 36.000 0.00 0.00 0.00 3.85
489 493 0.046397 ACCCCTCTTTCCTATGGGCT 59.954 55.000 0.00 0.00 40.04 5.19
490 494 0.474614 GACCCCTCTTTCCTATGGGC 59.525 60.000 0.00 0.00 40.04 5.36
524 528 4.568359 CGAGATGACCATGACCAAACTTAG 59.432 45.833 0.00 0.00 0.00 2.18
537 541 4.066646 TGACTTTGTTTCGAGATGACCA 57.933 40.909 0.00 0.00 0.00 4.02
552 556 7.903995 ACATTTTCATGTTGTTGTTGACTTT 57.096 28.000 0.00 0.00 41.16 2.66
610 614 4.646492 ACAAGCAGAGAAACATCAAAACCT 59.354 37.500 0.00 0.00 0.00 3.50
627 631 2.192861 CCAGCGGGTGAAACAAGCA 61.193 57.895 9.09 0.00 42.03 3.91
641 645 1.728490 GGATTGTTGCGGGATCCAGC 61.728 60.000 27.79 27.79 39.30 4.85
650 654 2.643551 ACCCTTCATAGGATTGTTGCG 58.356 47.619 0.00 0.00 45.05 4.85
653 657 7.309805 GCAAAGTTAACCCTTCATAGGATTGTT 60.310 37.037 0.88 0.00 45.05 2.83
662 666 4.923415 AGCTAGCAAAGTTAACCCTTCAT 58.077 39.130 18.83 0.00 0.00 2.57
681 685 8.776470 CATGACCAACAAATTTAAAATCAAGCT 58.224 29.630 0.00 0.00 0.00 3.74
694 698 4.040339 GGGAGGAAAACATGACCAACAAAT 59.960 41.667 0.00 0.00 0.00 2.32
777 1111 9.228636 GTAAAACATCGCCGTTATTAATTGATT 57.771 29.630 0.00 0.00 0.00 2.57
800 1134 6.504398 TCACATTTAACATTTTGTGGCGTAA 58.496 32.000 0.00 0.00 39.86 3.18
807 1141 6.636850 GCTTCGTCTCACATTTAACATTTTGT 59.363 34.615 0.00 0.00 0.00 2.83
813 1147 4.025229 GTGTGCTTCGTCTCACATTTAACA 60.025 41.667 8.91 0.00 43.94 2.41
826 1160 3.407698 TCCAACAATATGTGTGCTTCGT 58.592 40.909 0.00 0.00 40.60 3.85
836 1170 3.638160 CCTCCCAACCATCCAACAATATG 59.362 47.826 0.00 0.00 0.00 1.78
855 1189 1.903183 AGGACTTGAACTACTGCCCTC 59.097 52.381 0.00 0.00 0.00 4.30
859 1193 2.417719 CACCAGGACTTGAACTACTGC 58.582 52.381 0.00 0.00 0.00 4.40
893 1227 5.823570 TCGCCGGAAATCCTAAAATAAATCA 59.176 36.000 5.05 0.00 0.00 2.57
978 1320 3.012518 AGAATGCAGTACAATCACAGGC 58.987 45.455 0.00 0.00 29.89 4.85
980 1322 7.601073 TTTCTAGAATGCAGTACAATCACAG 57.399 36.000 5.89 0.00 29.89 3.66
1095 1438 2.735237 CGGGCGACTATTCCCCTC 59.265 66.667 0.00 0.00 39.39 4.30
1161 1509 0.533755 CCCGATCTCAACTCCATGGC 60.534 60.000 6.96 0.00 0.00 4.40
1181 1532 1.878522 CGAGAAATGGAGGCGACGG 60.879 63.158 0.00 0.00 0.00 4.79
1728 2106 0.968393 GAGAGCAAGGAGTCGAGGGT 60.968 60.000 0.00 0.00 0.00 4.34
2039 6241 0.980423 GGGAGCTGTCCTTGTCTCTT 59.020 55.000 0.00 0.00 43.36 2.85
2158 6621 3.004734 AGTCCTGGAAAAACAATTGAGCG 59.995 43.478 13.59 0.00 0.00 5.03
2167 6677 3.694566 ACACAGACAAGTCCTGGAAAAAC 59.305 43.478 0.00 0.00 36.03 2.43
2188 6699 3.511934 AGTTATCCGCCTCATCCTGATAC 59.488 47.826 0.00 0.00 0.00 2.24
2586 8305 2.001357 CATCGGTGCACATCTGACG 58.999 57.895 20.43 11.84 0.00 4.35
2712 8431 9.486123 AACATATACTCACCAGAGCTATGATAT 57.514 33.333 10.62 1.13 46.09 1.63
2794 8521 6.092092 TGCCACATATTCAACAAATCTTTCG 58.908 36.000 0.00 0.00 0.00 3.46
2855 8590 9.034544 GCATTTTGACTTAGCTAAATAATTGGG 57.965 33.333 7.74 0.00 0.00 4.12
2856 8591 9.807649 AGCATTTTGACTTAGCTAAATAATTGG 57.192 29.630 7.74 0.00 33.06 3.16
2863 8598 9.840427 GAAATGTAGCATTTTGACTTAGCTAAA 57.160 29.630 7.74 0.00 39.26 1.85
2884 8619 7.549842 TGTTGGATCATAATTTTGGCAGAAATG 59.450 33.333 0.00 0.00 30.06 2.32
2978 8726 0.243636 ATGCAAAAGTAAGCCCACGC 59.756 50.000 0.00 0.00 0.00 5.34
3018 8766 4.202567 ACATATGTGAAAGGAAGGGTGTGT 60.203 41.667 7.78 0.00 0.00 3.72
3245 9016 1.065491 TCAGCCTGTGTGTTGACTGTT 60.065 47.619 0.00 0.00 0.00 3.16
3261 9032 2.745821 TCTTGAATGCTCATGTGTCAGC 59.254 45.455 0.00 0.00 36.08 4.26
3273 9044 6.308766 GTGAATGTTATGGTGTTCTTGAATGC 59.691 38.462 0.00 0.00 0.00 3.56
3276 9047 6.770303 TGAGTGAATGTTATGGTGTTCTTGAA 59.230 34.615 0.00 0.00 0.00 2.69
3277 9048 6.204688 GTGAGTGAATGTTATGGTGTTCTTGA 59.795 38.462 0.00 0.00 0.00 3.02
3279 9050 6.017109 GTGTGAGTGAATGTTATGGTGTTCTT 60.017 38.462 0.00 0.00 0.00 2.52
3280 9051 5.470098 GTGTGAGTGAATGTTATGGTGTTCT 59.530 40.000 0.00 0.00 0.00 3.01
3281 9052 5.238432 TGTGTGAGTGAATGTTATGGTGTTC 59.762 40.000 0.00 0.00 0.00 3.18
3282 9053 5.129634 TGTGTGAGTGAATGTTATGGTGTT 58.870 37.500 0.00 0.00 0.00 3.32
3283 9054 4.713553 TGTGTGAGTGAATGTTATGGTGT 58.286 39.130 0.00 0.00 0.00 4.16
3284 9055 5.451908 GTTGTGTGAGTGAATGTTATGGTG 58.548 41.667 0.00 0.00 0.00 4.17
3285 9056 4.518970 GGTTGTGTGAGTGAATGTTATGGT 59.481 41.667 0.00 0.00 0.00 3.55
3286 9057 4.378356 CGGTTGTGTGAGTGAATGTTATGG 60.378 45.833 0.00 0.00 0.00 2.74
3287 9058 4.450757 TCGGTTGTGTGAGTGAATGTTATG 59.549 41.667 0.00 0.00 0.00 1.90
3288 9059 4.451096 GTCGGTTGTGTGAGTGAATGTTAT 59.549 41.667 0.00 0.00 0.00 1.89
3289 9060 3.805422 GTCGGTTGTGTGAGTGAATGTTA 59.195 43.478 0.00 0.00 0.00 2.41
3290 9061 2.612212 GTCGGTTGTGTGAGTGAATGTT 59.388 45.455 0.00 0.00 0.00 2.71
3291 9062 2.210116 GTCGGTTGTGTGAGTGAATGT 58.790 47.619 0.00 0.00 0.00 2.71
3394 9194 1.536766 GTTTACCCACCGGTTTACTGC 59.463 52.381 2.97 0.00 40.58 4.40
3532 9332 2.672908 CTGGCATGTGAGCAGGGA 59.327 61.111 0.00 0.00 35.83 4.20
3593 9393 1.392853 CGCTCTCAGCAGTGTGAATTC 59.607 52.381 0.00 0.00 42.58 2.17
3712 9517 5.372343 TCAATATTGCTCTGGCTTCCTAA 57.628 39.130 10.76 0.00 39.59 2.69
3807 9612 6.887626 TTAACAATTCCCTAACAGACCAAC 57.112 37.500 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.