Multiple sequence alignment - TraesCS7D01G507700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G507700 chr7D 100.000 3701 0 0 1 3701 611743453 611739753 0.000000e+00 6835.0
1 TraesCS7D01G507700 chr7D 83.102 432 36 13 147 572 129955206 129954806 3.510000e-95 359.0
2 TraesCS7D01G507700 chr7D 97.753 89 2 0 888 976 611742482 611742394 1.780000e-33 154.0
3 TraesCS7D01G507700 chr7D 97.753 89 2 0 972 1060 611742566 611742478 1.780000e-33 154.0
4 TraesCS7D01G507700 chr7B 91.765 2720 130 37 1011 3701 701205238 701202584 0.000000e+00 3696.0
5 TraesCS7D01G507700 chr7B 91.686 866 48 10 1 849 701206093 701205235 0.000000e+00 1179.0
6 TraesCS7D01G507700 chr7B 96.078 51 1 1 965 1015 717332055 717332104 8.520000e-12 82.4
7 TraesCS7D01G507700 chr7B 94.000 50 3 0 927 976 701205238 701205189 3.960000e-10 76.8
8 TraesCS7D01G507700 chr7A 95.358 1508 42 10 1011 2501 701666654 701665158 0.000000e+00 2372.0
9 TraesCS7D01G507700 chr7A 90.599 968 47 16 2500 3457 701665054 701664121 0.000000e+00 1243.0
10 TraesCS7D01G507700 chr7A 89.691 873 57 12 1 849 701667514 701666651 0.000000e+00 1083.0
11 TraesCS7D01G507700 chr7A 88.839 448 40 6 1 447 14647917 14647479 3.250000e-150 542.0
12 TraesCS7D01G507700 chr7A 88.688 442 40 6 1 441 3165408 3165840 7.040000e-147 531.0
13 TraesCS7D01G507700 chr7A 87.946 448 44 6 1 447 162747220 162746782 1.520000e-143 520.0
14 TraesCS7D01G507700 chr7A 94.760 229 10 2 3474 3701 701664151 701663924 4.550000e-94 355.0
15 TraesCS7D01G507700 chr7A 96.000 50 2 0 927 976 701666654 701666605 8.520000e-12 82.4
16 TraesCS7D01G507700 chr7A 90.000 60 5 1 956 1014 309401383 309401324 3.960000e-10 76.8
17 TraesCS7D01G507700 chr2A 87.946 448 44 6 1 447 604075584 604075146 1.520000e-143 520.0
18 TraesCS7D01G507700 chr2A 86.830 448 49 7 1 447 272399400 272398962 3.320000e-135 492.0
19 TraesCS7D01G507700 chr2A 83.333 432 31 18 147 572 714801335 714800939 9.770000e-96 361.0
20 TraesCS7D01G507700 chr2A 85.503 338 34 10 1 337 549131957 549131634 4.580000e-89 339.0
21 TraesCS7D01G507700 chr2A 92.632 95 5 2 835 928 200063965 200063872 6.450000e-28 135.0
22 TraesCS7D01G507700 chr2A 93.548 93 3 3 845 935 617636119 617636028 6.450000e-28 135.0
23 TraesCS7D01G507700 chr2A 94.382 89 3 1 846 932 632952993 632952905 6.450000e-28 135.0
24 TraesCS7D01G507700 chr2A 97.917 48 1 0 969 1016 632952952 632952905 2.370000e-12 84.2
25 TraesCS7D01G507700 chr5A 87.723 448 45 7 1 447 233503044 233502606 7.090000e-142 514.0
26 TraesCS7D01G507700 chr2D 83.102 432 33 14 147 572 646016143 646015746 1.260000e-94 357.0
27 TraesCS7D01G507700 chr4A 82.639 432 36 14 147 572 519259699 519259301 2.740000e-91 346.0
28 TraesCS7D01G507700 chr4A 96.591 88 1 1 846 931 428159973 428159886 1.070000e-30 145.0
29 TraesCS7D01G507700 chr4A 92.632 95 3 3 845 936 379040947 379041040 2.320000e-27 134.0
30 TraesCS7D01G507700 chr1A 82.176 432 38 14 147 572 212153655 212153257 5.920000e-88 335.0
31 TraesCS7D01G507700 chr1A 84.615 338 37 10 1 337 439587995 439588318 4.610000e-84 322.0
32 TraesCS7D01G507700 chr1A 84.226 336 38 10 3 337 264360484 264360163 2.780000e-81 313.0
33 TraesCS7D01G507700 chr1A 93.333 90 4 1 846 933 527083931 527084020 8.340000e-27 132.0
34 TraesCS7D01G507700 chr1A 88.182 110 10 2 831 937 518662861 518662752 1.080000e-25 128.0
35 TraesCS7D01G507700 chr1A 97.959 49 1 0 969 1017 527083972 527084020 6.590000e-13 86.1
36 TraesCS7D01G507700 chr1A 91.228 57 5 0 969 1025 530756618 530756562 1.100000e-10 78.7
37 TraesCS7D01G507700 chr3A 84.661 339 35 11 1 337 114914631 114914308 4.610000e-84 322.0
38 TraesCS7D01G507700 chr3A 93.478 92 3 3 838 928 692055447 692055358 2.320000e-27 134.0
39 TraesCS7D01G507700 chrUn 88.312 154 14 3 419 572 24202799 24202948 8.160000e-42 182.0
40 TraesCS7D01G507700 chr6B 94.118 68 4 0 606 673 440456880 440456947 1.820000e-18 104.0
41 TraesCS7D01G507700 chr6D 97.959 49 1 0 966 1014 12489842 12489794 6.590000e-13 86.1
42 TraesCS7D01G507700 chr5D 97.917 48 1 0 969 1016 538675108 538675155 2.370000e-12 84.2
43 TraesCS7D01G507700 chr6A 94.231 52 3 0 969 1020 349779871 349779820 3.060000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G507700 chr7D 611739753 611743453 3700 True 2381.00 6835 98.502000 1 3701 3 chr7D.!!$R2 3700
1 TraesCS7D01G507700 chr7B 701202584 701206093 3509 True 1650.60 3696 92.483667 1 3701 3 chr7B.!!$R1 3700
2 TraesCS7D01G507700 chr7A 701663924 701667514 3590 True 1027.08 2372 93.281600 1 3701 5 chr7A.!!$R4 3700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.321346 CCTGGCCAATTTGGTGGAAC 59.679 55.0 16.62 0.00 41.65 3.62 F
280 292 0.808453 GCATCGCCGTTGCTTAGGTA 60.808 55.0 12.62 0.00 37.14 3.08 F
1453 1480 1.028330 GCTGGCAGCTCATGTGCTTA 61.028 55.0 31.37 8.42 41.98 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1462 1.676746 ATAAGCACATGAGCTGCCAG 58.323 50.000 18.70 0.0 45.89 4.85 R
1478 1522 2.745281 GCACGTTGTGGCTTAAGGATAA 59.255 45.455 4.29 0.0 33.64 1.75 R
2799 2950 0.178990 GTTTCCACCTTGTCCCAGCT 60.179 55.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.373116 TCGCCTCGCCTTGTGGAC 62.373 66.667 0.00 0.00 32.77 4.02
93 94 2.755469 CTCGCCCCCATGGTTTGG 60.755 66.667 11.73 9.36 46.00 3.28
129 130 3.414700 CTTCTGCGTGCGTGGGTC 61.415 66.667 0.00 0.00 0.00 4.46
183 184 0.321346 CCTGGCCAATTTGGTGGAAC 59.679 55.000 16.62 0.00 41.65 3.62
236 248 2.780643 CCAAGCGTGTCGATGCTG 59.219 61.111 10.02 5.53 44.13 4.41
238 250 3.121030 AAGCGTGTCGATGCTGCC 61.121 61.111 10.02 0.00 44.13 4.85
245 257 1.663074 GTCGATGCTGCCGATCTCC 60.663 63.158 4.41 0.00 38.38 3.71
249 261 1.752358 GATGCTGCCGATCTCCCTGA 61.752 60.000 0.00 0.00 0.00 3.86
258 270 2.311463 CGATCTCCCTGATGTACCACT 58.689 52.381 0.00 0.00 35.14 4.00
279 291 2.106683 GCATCGCCGTTGCTTAGGT 61.107 57.895 12.62 0.00 37.14 3.08
280 292 0.808453 GCATCGCCGTTGCTTAGGTA 60.808 55.000 12.62 0.00 37.14 3.08
281 293 1.209128 CATCGCCGTTGCTTAGGTAG 58.791 55.000 0.00 0.00 34.43 3.18
306 318 2.687842 GCTACAGGCACATCAGAGC 58.312 57.895 0.00 0.00 41.35 4.09
432 444 3.118738 ACCAATCGACAGATGTAGGAACC 60.119 47.826 0.00 0.00 37.14 3.62
442 454 7.016153 ACAGATGTAGGAACCTGTTTATTCA 57.984 36.000 3.36 0.00 36.57 2.57
443 455 7.633789 ACAGATGTAGGAACCTGTTTATTCAT 58.366 34.615 3.36 0.00 36.57 2.57
444 456 8.109634 ACAGATGTAGGAACCTGTTTATTCATT 58.890 33.333 3.36 0.00 36.57 2.57
445 457 8.616076 CAGATGTAGGAACCTGTTTATTCATTC 58.384 37.037 3.36 0.00 0.00 2.67
503 523 1.538512 CACACAGGCAAATCAGAGTGG 59.461 52.381 0.00 0.00 0.00 4.00
599 619 6.556874 AGGATTTGGAGTATTTGAAAACCCAA 59.443 34.615 0.00 0.00 0.00 4.12
614 634 3.701205 ACCCAAAAAGGAATGAATGCC 57.299 42.857 0.00 0.00 41.22 4.40
625 645 1.662517 ATGAATGCCGCATGACGTTA 58.337 45.000 6.63 0.00 41.42 3.18
676 696 8.477256 AGCATTTTTAGCATGTGTATAACCATT 58.523 29.630 0.00 0.00 0.00 3.16
841 867 3.819368 TCTCAATGTTTGTGGAGCTGAA 58.181 40.909 0.00 0.00 0.00 3.02
846 872 5.534278 TCAATGTTTGTGGAGCTGAAACATA 59.466 36.000 16.91 6.14 45.26 2.29
847 873 4.829064 TGTTTGTGGAGCTGAAACATAC 57.171 40.909 0.00 0.00 35.26 2.39
848 874 4.460263 TGTTTGTGGAGCTGAAACATACT 58.540 39.130 0.00 0.00 35.26 2.12
849 875 4.515191 TGTTTGTGGAGCTGAAACATACTC 59.485 41.667 0.00 0.00 35.26 2.59
850 876 7.740733 ATGTTTGTGGAGCTGAAACATACTCC 61.741 42.308 15.80 11.51 44.56 3.85
851 877 2.027192 TGTGGAGCTGAAACATACTCCC 60.027 50.000 14.16 8.92 46.76 4.30
852 878 2.237392 GTGGAGCTGAAACATACTCCCT 59.763 50.000 14.16 0.00 46.76 4.20
853 879 2.501723 TGGAGCTGAAACATACTCCCTC 59.498 50.000 14.16 0.00 46.76 4.30
854 880 2.769095 GGAGCTGAAACATACTCCCTCT 59.231 50.000 0.00 0.00 42.44 3.69
855 881 3.431486 GGAGCTGAAACATACTCCCTCTG 60.431 52.174 0.00 0.00 42.44 3.35
856 882 3.177228 AGCTGAAACATACTCCCTCTGT 58.823 45.455 0.00 0.00 0.00 3.41
857 883 4.353777 AGCTGAAACATACTCCCTCTGTA 58.646 43.478 0.00 0.00 0.00 2.74
858 884 4.777896 AGCTGAAACATACTCCCTCTGTAA 59.222 41.667 0.00 0.00 0.00 2.41
859 885 5.248477 AGCTGAAACATACTCCCTCTGTAAA 59.752 40.000 0.00 0.00 0.00 2.01
860 886 5.351740 GCTGAAACATACTCCCTCTGTAAAC 59.648 44.000 0.00 0.00 0.00 2.01
861 887 6.428083 TGAAACATACTCCCTCTGTAAACA 57.572 37.500 0.00 0.00 0.00 2.83
862 888 6.833041 TGAAACATACTCCCTCTGTAAACAA 58.167 36.000 0.00 0.00 0.00 2.83
863 889 7.284074 TGAAACATACTCCCTCTGTAAACAAA 58.716 34.615 0.00 0.00 0.00 2.83
864 890 7.942341 TGAAACATACTCCCTCTGTAAACAAAT 59.058 33.333 0.00 0.00 0.00 2.32
865 891 9.444600 GAAACATACTCCCTCTGTAAACAAATA 57.555 33.333 0.00 0.00 0.00 1.40
866 892 9.975218 AAACATACTCCCTCTGTAAACAAATAT 57.025 29.630 0.00 0.00 0.00 1.28
872 898 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
873 899 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
874 900 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
875 901 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
876 902 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
884 910 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
922 948 7.426929 ACGCTCTTATATTTCTTTATGCAGG 57.573 36.000 0.00 0.00 0.00 4.85
923 949 6.428159 ACGCTCTTATATTTCTTTATGCAGGG 59.572 38.462 0.00 0.00 0.00 4.45
924 950 6.650807 CGCTCTTATATTTCTTTATGCAGGGA 59.349 38.462 0.00 0.00 0.00 4.20
925 951 7.148507 CGCTCTTATATTTCTTTATGCAGGGAG 60.149 40.741 0.00 0.00 0.00 4.30
926 952 7.663493 GCTCTTATATTTCTTTATGCAGGGAGT 59.337 37.037 0.00 0.00 0.00 3.85
928 954 9.998106 TCTTATATTTCTTTATGCAGGGAGTAC 57.002 33.333 0.00 0.00 0.00 2.73
933 959 8.682936 ATTTCTTTATGCAGGGAGTACTAATG 57.317 34.615 0.00 0.00 0.00 1.90
934 960 6.808321 TCTTTATGCAGGGAGTACTAATGT 57.192 37.500 0.00 0.00 0.00 2.71
935 961 7.195374 TCTTTATGCAGGGAGTACTAATGTT 57.805 36.000 0.00 0.00 0.00 2.71
936 962 7.272978 TCTTTATGCAGGGAGTACTAATGTTC 58.727 38.462 0.00 0.00 0.00 3.18
937 963 6.808321 TTATGCAGGGAGTACTAATGTTCT 57.192 37.500 0.00 0.00 0.00 3.01
938 964 4.737855 TGCAGGGAGTACTAATGTTCTC 57.262 45.455 0.00 0.00 39.09 2.87
944 970 4.978083 GAGTACTAATGTTCTCCCGTGA 57.022 45.455 0.00 0.00 35.44 4.35
945 971 4.922719 GAGTACTAATGTTCTCCCGTGAG 58.077 47.826 0.00 0.00 40.17 3.51
964 990 3.312736 AGGTCCACCTGATGTTGTTTT 57.687 42.857 0.00 0.00 46.55 2.43
965 991 3.642141 AGGTCCACCTGATGTTGTTTTT 58.358 40.909 0.00 0.00 46.55 1.94
966 992 4.798882 AGGTCCACCTGATGTTGTTTTTA 58.201 39.130 0.00 0.00 46.55 1.52
967 993 5.393866 AGGTCCACCTGATGTTGTTTTTAT 58.606 37.500 0.00 0.00 46.55 1.40
968 994 5.476945 AGGTCCACCTGATGTTGTTTTTATC 59.523 40.000 0.00 0.00 46.55 1.75
969 995 5.476945 GGTCCACCTGATGTTGTTTTTATCT 59.523 40.000 0.00 0.00 0.00 1.98
970 996 6.015434 GGTCCACCTGATGTTGTTTTTATCTT 60.015 38.462 0.00 0.00 0.00 2.40
971 997 7.433680 GTCCACCTGATGTTGTTTTTATCTTT 58.566 34.615 0.00 0.00 0.00 2.52
972 998 8.573035 GTCCACCTGATGTTGTTTTTATCTTTA 58.427 33.333 0.00 0.00 0.00 1.85
973 999 8.792633 TCCACCTGATGTTGTTTTTATCTTTAG 58.207 33.333 0.00 0.00 0.00 1.85
974 1000 8.576442 CCACCTGATGTTGTTTTTATCTTTAGT 58.424 33.333 0.00 0.00 0.00 2.24
975 1001 9.398170 CACCTGATGTTGTTTTTATCTTTAGTG 57.602 33.333 0.00 0.00 0.00 2.74
976 1002 9.349713 ACCTGATGTTGTTTTTATCTTTAGTGA 57.650 29.630 0.00 0.00 0.00 3.41
988 1014 9.871238 TTTTATCTTTAGTGATCTAAACGCTCT 57.129 29.630 0.00 0.00 40.05 4.09
989 1015 9.871238 TTTATCTTTAGTGATCTAAACGCTCTT 57.129 29.630 0.00 0.00 40.05 2.85
1006 1032 7.426929 ACGCTCTTATATTTCTTTATGCAGG 57.573 36.000 0.00 0.00 0.00 4.85
1007 1033 6.428159 ACGCTCTTATATTTCTTTATGCAGGG 59.572 38.462 0.00 0.00 0.00 4.45
1008 1034 6.650807 CGCTCTTATATTTCTTTATGCAGGGA 59.349 38.462 0.00 0.00 0.00 4.20
1009 1035 7.148507 CGCTCTTATATTTCTTTATGCAGGGAG 60.149 40.741 0.00 0.00 0.00 4.30
1180 1206 3.261981 ACTTTGCCTTGTATCCTACGG 57.738 47.619 0.00 0.00 0.00 4.02
1234 1260 3.664551 TCGACTTCTCTTATGAGGGGA 57.335 47.619 5.84 0.00 40.58 4.81
1251 1277 7.977789 TGAGGGGAAAATTGCTTTTATTTTC 57.022 32.000 10.90 10.90 45.03 2.29
1380 1407 5.412594 TGGAGTGCTATGTGAAGAATTTGTC 59.587 40.000 0.00 0.00 0.00 3.18
1435 1462 5.627367 TGCGTTTGTATAAATGTTTCACTGC 59.373 36.000 6.10 0.00 35.64 4.40
1451 1478 2.750637 GCTGGCAGCTCATGTGCT 60.751 61.111 31.37 16.33 45.18 4.40
1452 1479 2.341101 GCTGGCAGCTCATGTGCTT 61.341 57.895 31.37 2.98 41.98 3.91
1453 1480 1.028330 GCTGGCAGCTCATGTGCTTA 61.028 55.000 31.37 8.42 41.98 3.09
1454 1481 1.676746 CTGGCAGCTCATGTGCTTAT 58.323 50.000 19.25 0.00 41.98 1.73
1456 1483 1.746787 TGGCAGCTCATGTGCTTATTG 59.253 47.619 19.25 10.45 41.98 1.90
1460 1504 4.346129 GCAGCTCATGTGCTTATTGTTAC 58.654 43.478 19.25 0.00 41.98 2.50
1478 1522 5.095809 TGTTACTGTTACCCCTTGACCTAT 58.904 41.667 0.00 0.00 0.00 2.57
1537 1581 1.996798 TCGAAGTCTCCTCACTTGGT 58.003 50.000 0.00 0.00 36.71 3.67
1552 1596 5.751586 TCACTTGGTTACTTCTTTTCACCT 58.248 37.500 0.00 0.00 0.00 4.00
1607 1651 2.819608 GAGCAGAATGGGCACTAAACAA 59.180 45.455 0.00 0.00 35.86 2.83
1614 1658 6.875195 CAGAATGGGCACTAAACAATTGATTT 59.125 34.615 13.59 11.17 0.00 2.17
1761 1805 8.941995 AGAGCAATACTATGAGGTGTCTAATA 57.058 34.615 0.00 0.00 0.00 0.98
1970 2014 7.282585 CCAAGATGATGGAGAACATAGGTAAA 58.717 38.462 0.00 0.00 43.54 2.01
1976 2020 4.523083 TGGAGAACATAGGTAAATGGCAC 58.477 43.478 0.00 0.00 0.00 5.01
2166 2210 7.609960 TGTTGTGCATGTTCCATTTGTTATAT 58.390 30.769 0.00 0.00 0.00 0.86
2173 2217 9.369904 GCATGTTCCATTTGTTATATTTTGAGT 57.630 29.630 0.00 0.00 0.00 3.41
2177 2221 9.353999 GTTCCATTTGTTATATTTTGAGTCCAC 57.646 33.333 0.00 0.00 0.00 4.02
2286 2330 7.891183 AGTGTGTCTGAATCTATGTTGTTAC 57.109 36.000 0.00 0.00 0.00 2.50
2325 2369 1.421646 AGTACCTGCCTTTTCAGCTGT 59.578 47.619 14.67 0.00 32.87 4.40
2420 2466 4.829064 TGGTTTTGTAGCAATGACACTC 57.171 40.909 0.00 0.00 0.00 3.51
2568 2719 5.162794 TGGCAATGATTTTCTGTCGATTTG 58.837 37.500 0.00 0.00 0.00 2.32
2578 2729 4.848562 TCTGTCGATTTGGCTCGTATAT 57.151 40.909 0.00 0.00 39.62 0.86
2713 2864 5.728898 GCAAACAGCTAGATGTAGAACATGC 60.729 44.000 15.12 13.53 38.55 4.06
2714 2865 4.065321 ACAGCTAGATGTAGAACATGCC 57.935 45.455 12.92 0.00 39.27 4.40
2716 2867 2.036475 AGCTAGATGTAGAACATGCCGG 59.964 50.000 0.00 0.00 39.27 6.13
2727 2878 0.395586 ACATGCCGGCAATATGTGGT 60.396 50.000 36.33 18.90 34.04 4.16
2756 2907 1.518325 TGATGCGACAAACATCCGTT 58.482 45.000 1.61 0.00 42.68 4.44
2759 2910 1.131826 GCGACAAACATCCGTTCCG 59.868 57.895 0.00 0.00 32.91 4.30
2781 2932 1.000827 ACTGCTTCACACTCGAGTCAG 60.001 52.381 16.96 19.91 0.00 3.51
2782 2933 1.268079 CTGCTTCACACTCGAGTCAGA 59.732 52.381 16.96 13.63 0.00 3.27
2783 2934 1.681264 TGCTTCACACTCGAGTCAGAA 59.319 47.619 16.96 19.86 0.00 3.02
2784 2935 2.297315 TGCTTCACACTCGAGTCAGAAT 59.703 45.455 22.44 3.95 0.00 2.40
2785 2936 2.665537 GCTTCACACTCGAGTCAGAATG 59.334 50.000 22.44 18.04 37.54 2.67
2786 2937 3.858877 GCTTCACACTCGAGTCAGAATGT 60.859 47.826 22.44 12.49 37.40 2.71
2787 2938 4.302455 CTTCACACTCGAGTCAGAATGTT 58.698 43.478 22.44 0.00 37.40 2.71
2788 2939 3.642705 TCACACTCGAGTCAGAATGTTG 58.357 45.455 16.96 3.56 37.40 3.33
2789 2940 3.068165 TCACACTCGAGTCAGAATGTTGT 59.932 43.478 16.96 4.27 37.40 3.32
2790 2941 3.804325 CACACTCGAGTCAGAATGTTGTT 59.196 43.478 16.96 0.00 37.40 2.83
2791 2942 4.051922 ACACTCGAGTCAGAATGTTGTTC 58.948 43.478 16.96 0.00 37.40 3.18
2792 2943 3.430218 CACTCGAGTCAGAATGTTGTTCC 59.570 47.826 16.96 0.00 37.40 3.62
2793 2944 3.069586 ACTCGAGTCAGAATGTTGTTCCA 59.930 43.478 13.58 0.00 37.40 3.53
2799 2950 3.826157 GTCAGAATGTTGTTCCATGGGAA 59.174 43.478 13.02 1.99 36.99 3.97
2821 2972 0.107831 TGGGACAAGGTGGAAACTCG 59.892 55.000 0.00 0.00 31.92 4.18
3014 3172 3.291584 TGACTATCGGCAGAGACATTCT 58.708 45.455 0.00 0.00 36.25 2.40
3054 3212 0.950836 TCACAAACACCGCCAGAATG 59.049 50.000 0.00 0.00 0.00 2.67
3080 3239 9.346725 GTGAAAAGAAAAGCAGATACCTTATTG 57.653 33.333 0.00 0.00 0.00 1.90
3087 3246 3.064931 GCAGATACCTTATTGGGTACGC 58.935 50.000 2.35 2.35 43.58 4.42
3103 3262 4.045104 GGTACGCATCTGAACTGATACTG 58.955 47.826 0.00 0.00 0.00 2.74
3148 3307 1.967066 CTCCAGGGCTATGTAGGACTG 59.033 57.143 0.00 0.00 0.00 3.51
3167 3326 5.480422 GGACTGGGTTTCCTGATAACATTTT 59.520 40.000 0.00 0.00 36.08 1.82
3185 3344 5.300792 ACATTTTGTGGGTACGAATTTGACT 59.699 36.000 0.00 0.00 30.46 3.41
3226 3385 0.969149 TAGCTGTGTGGTCAGTCAGG 59.031 55.000 0.00 0.00 37.70 3.86
3256 3415 0.994247 TCCACATCCAGCCTTGTCAT 59.006 50.000 0.00 0.00 0.00 3.06
3273 3432 7.013655 GCCTTGTCATTATGTTATGGATCTGTT 59.986 37.037 0.00 0.00 0.00 3.16
3354 3516 2.288961 TTAGTTCGGGAAGATGACGC 57.711 50.000 0.00 0.00 0.00 5.19
3378 3540 1.086067 CGCTCGCAGGACATGATTGT 61.086 55.000 0.00 0.00 39.32 2.71
3398 3560 1.515521 GCCTCACCTTGGTTGGTTCG 61.516 60.000 9.36 0.00 38.45 3.95
3446 3612 6.835488 AGCATGATATGGAACCTGTTACAAAT 59.165 34.615 0.00 0.00 36.91 2.32
3448 3614 7.416664 GCATGATATGGAACCTGTTACAAATGT 60.417 37.037 0.00 0.00 36.91 2.71
3460 3626 4.156739 TGTTACAAATGTGCACAAGTGACA 59.843 37.500 27.98 27.98 0.00 3.58
3469 3635 4.157472 TGTGCACAAGTGACAAGAAATTGA 59.843 37.500 19.28 0.00 0.00 2.57
3560 3729 8.557029 AGTTCTGTAAAACCTTTTGTCTAATCG 58.443 33.333 0.00 0.00 0.00 3.34
3590 3759 6.814146 AGAGACTTCTGATGACCGTAATTTTC 59.186 38.462 0.00 0.00 30.72 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.080093 GACGGATCTGCGTCCACAA 60.080 57.895 12.50 0.00 38.21 3.33
18 19 1.235281 TATCCCTCGACGGATCTGCG 61.235 60.000 17.82 6.74 41.92 5.18
93 94 5.460419 CAGAAGTTACCAGATGCGTCTAATC 59.540 44.000 8.44 0.00 32.09 1.75
183 184 0.904865 TGTACAGGCCCCAGAGACAG 60.905 60.000 0.00 0.00 0.00 3.51
236 248 0.318762 GGTACATCAGGGAGATCGGC 59.681 60.000 0.00 0.00 33.72 5.54
238 250 2.311463 AGTGGTACATCAGGGAGATCG 58.689 52.381 0.00 0.00 44.52 3.69
245 257 3.320626 CGATGCATAGTGGTACATCAGG 58.679 50.000 0.00 0.00 44.52 3.86
249 261 1.605457 CGGCGATGCATAGTGGTACAT 60.605 52.381 0.00 0.00 44.52 2.29
258 270 1.217001 CTAAGCAACGGCGATGCATA 58.783 50.000 37.02 29.51 46.22 3.14
371 383 7.037438 ACAAAAGGATGCAGCATATAAACAAG 58.963 34.615 8.22 0.00 0.00 3.16
432 444 6.506500 AGAAGCCACTGAATGAATAAACAG 57.493 37.500 0.00 0.00 36.58 3.16
442 454 3.357203 TCTCTACGAGAAGCCACTGAAT 58.643 45.455 0.00 0.00 35.59 2.57
443 455 2.750166 CTCTCTACGAGAAGCCACTGAA 59.250 50.000 0.00 0.00 42.62 3.02
444 456 2.027100 TCTCTCTACGAGAAGCCACTGA 60.027 50.000 0.00 0.00 45.55 3.41
445 457 2.360844 TCTCTCTACGAGAAGCCACTG 58.639 52.381 0.00 0.00 45.55 3.66
473 485 1.448540 GCCTGTGTGGATCTGGACG 60.449 63.158 0.00 0.00 38.35 4.79
596 616 2.001872 GCGGCATTCATTCCTTTTTGG 58.998 47.619 0.00 0.00 37.10 3.28
599 619 2.496871 TCATGCGGCATTCATTCCTTTT 59.503 40.909 13.81 0.00 0.00 2.27
614 634 2.478894 ACTTCCAAAGTAACGTCATGCG 59.521 45.455 7.79 7.79 42.89 4.73
625 645 9.930693 CTCTTACTAAGACAATACTTCCAAAGT 57.069 33.333 0.00 0.00 38.19 2.66
676 696 1.982660 TAACACGGCACCAAAATCCA 58.017 45.000 0.00 0.00 0.00 3.41
846 872 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
847 873 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
848 874 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
849 875 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
850 876 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
858 884 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
896 922 8.345565 CCTGCATAAAGAAATATAAGAGCGTTT 58.654 33.333 0.00 0.00 0.00 3.60
897 923 7.041098 CCCTGCATAAAGAAATATAAGAGCGTT 60.041 37.037 0.00 0.00 0.00 4.84
898 924 6.428159 CCCTGCATAAAGAAATATAAGAGCGT 59.572 38.462 0.00 0.00 0.00 5.07
899 925 6.650807 TCCCTGCATAAAGAAATATAAGAGCG 59.349 38.462 0.00 0.00 0.00 5.03
900 926 7.663493 ACTCCCTGCATAAAGAAATATAAGAGC 59.337 37.037 0.00 0.00 0.00 4.09
902 928 9.998106 GTACTCCCTGCATAAAGAAATATAAGA 57.002 33.333 0.00 0.00 0.00 2.10
907 933 9.778741 CATTAGTACTCCCTGCATAAAGAAATA 57.221 33.333 0.00 0.00 0.00 1.40
908 934 8.275040 ACATTAGTACTCCCTGCATAAAGAAAT 58.725 33.333 0.00 0.00 0.00 2.17
909 935 7.630082 ACATTAGTACTCCCTGCATAAAGAAA 58.370 34.615 0.00 0.00 0.00 2.52
910 936 7.195374 ACATTAGTACTCCCTGCATAAAGAA 57.805 36.000 0.00 0.00 0.00 2.52
911 937 6.808321 ACATTAGTACTCCCTGCATAAAGA 57.192 37.500 0.00 0.00 0.00 2.52
912 938 7.275920 AGAACATTAGTACTCCCTGCATAAAG 58.724 38.462 0.00 0.00 0.00 1.85
913 939 7.195374 AGAACATTAGTACTCCCTGCATAAA 57.805 36.000 0.00 0.00 0.00 1.40
914 940 6.183360 GGAGAACATTAGTACTCCCTGCATAA 60.183 42.308 0.00 0.00 41.89 1.90
915 941 5.304614 GGAGAACATTAGTACTCCCTGCATA 59.695 44.000 0.00 0.00 41.89 3.14
916 942 4.101741 GGAGAACATTAGTACTCCCTGCAT 59.898 45.833 0.00 0.00 41.89 3.96
917 943 3.451178 GGAGAACATTAGTACTCCCTGCA 59.549 47.826 0.00 0.00 41.89 4.41
918 944 4.061357 GGAGAACATTAGTACTCCCTGC 57.939 50.000 0.00 0.00 41.89 4.85
922 948 3.698040 TCACGGGAGAACATTAGTACTCC 59.302 47.826 0.00 0.00 45.50 3.85
923 949 4.202030 CCTCACGGGAGAACATTAGTACTC 60.202 50.000 18.51 0.00 44.26 2.59
924 950 3.700038 CCTCACGGGAGAACATTAGTACT 59.300 47.826 18.51 0.00 44.26 2.73
925 951 3.446516 ACCTCACGGGAGAACATTAGTAC 59.553 47.826 18.51 0.00 44.26 2.73
926 952 3.698040 GACCTCACGGGAGAACATTAGTA 59.302 47.826 18.51 0.00 44.26 1.82
927 953 2.496470 GACCTCACGGGAGAACATTAGT 59.504 50.000 18.51 2.71 44.26 2.24
928 954 2.159085 GGACCTCACGGGAGAACATTAG 60.159 54.545 18.51 0.00 44.26 1.73
929 955 1.829222 GGACCTCACGGGAGAACATTA 59.171 52.381 18.51 0.00 44.26 1.90
930 956 0.613777 GGACCTCACGGGAGAACATT 59.386 55.000 18.51 0.00 44.26 2.71
931 957 0.544357 TGGACCTCACGGGAGAACAT 60.544 55.000 18.51 0.00 44.26 2.71
932 958 1.152419 TGGACCTCACGGGAGAACA 60.152 57.895 18.51 9.09 44.26 3.18
933 959 1.292541 GTGGACCTCACGGGAGAAC 59.707 63.158 18.51 9.41 44.26 3.01
934 960 1.911766 GGTGGACCTCACGGGAGAA 60.912 63.158 18.51 0.00 46.96 2.87
935 961 2.283676 GGTGGACCTCACGGGAGA 60.284 66.667 18.51 0.00 46.96 3.71
936 962 2.283966 AGGTGGACCTCACGGGAG 60.284 66.667 8.02 8.02 44.77 4.30
937 963 2.455960 ATCAGGTGGACCTCACGGGA 62.456 60.000 0.00 0.00 46.65 5.14
938 964 1.990060 ATCAGGTGGACCTCACGGG 60.990 63.158 0.00 0.00 46.65 5.28
939 965 1.219124 CATCAGGTGGACCTCACGG 59.781 63.158 0.00 0.00 46.65 4.94
940 966 0.321671 AACATCAGGTGGACCTCACG 59.678 55.000 0.00 0.00 46.65 4.35
941 967 1.072331 ACAACATCAGGTGGACCTCAC 59.928 52.381 0.00 0.00 46.65 3.51
942 968 1.434188 ACAACATCAGGTGGACCTCA 58.566 50.000 0.00 0.00 46.65 3.86
943 969 2.568623 AACAACATCAGGTGGACCTC 57.431 50.000 0.00 0.00 46.65 3.85
945 971 5.476945 AGATAAAAACAACATCAGGTGGACC 59.523 40.000 0.00 0.00 0.00 4.46
946 972 6.575162 AGATAAAAACAACATCAGGTGGAC 57.425 37.500 0.00 0.00 0.00 4.02
947 973 7.595819 AAAGATAAAAACAACATCAGGTGGA 57.404 32.000 0.00 0.00 0.00 4.02
948 974 8.576442 ACTAAAGATAAAAACAACATCAGGTGG 58.424 33.333 0.00 0.00 0.00 4.61
949 975 9.398170 CACTAAAGATAAAAACAACATCAGGTG 57.602 33.333 0.00 0.00 0.00 4.00
950 976 9.349713 TCACTAAAGATAAAAACAACATCAGGT 57.650 29.630 0.00 0.00 0.00 4.00
962 988 9.871238 AGAGCGTTTAGATCACTAAAGATAAAA 57.129 29.630 0.00 0.00 45.42 1.52
963 989 9.871238 AAGAGCGTTTAGATCACTAAAGATAAA 57.129 29.630 0.00 0.00 45.42 1.40
980 1006 8.345565 CCTGCATAAAGAAATATAAGAGCGTTT 58.654 33.333 0.00 0.00 0.00 3.60
981 1007 7.041098 CCCTGCATAAAGAAATATAAGAGCGTT 60.041 37.037 0.00 0.00 0.00 4.84
982 1008 6.428159 CCCTGCATAAAGAAATATAAGAGCGT 59.572 38.462 0.00 0.00 0.00 5.07
983 1009 6.650807 TCCCTGCATAAAGAAATATAAGAGCG 59.349 38.462 0.00 0.00 0.00 5.03
984 1010 7.663493 ACTCCCTGCATAAAGAAATATAAGAGC 59.337 37.037 0.00 0.00 0.00 4.09
986 1012 9.998106 GTACTCCCTGCATAAAGAAATATAAGA 57.002 33.333 0.00 0.00 0.00 2.10
991 1017 9.778741 CATTAGTACTCCCTGCATAAAGAAATA 57.221 33.333 0.00 0.00 0.00 1.40
992 1018 8.275040 ACATTAGTACTCCCTGCATAAAGAAAT 58.725 33.333 0.00 0.00 0.00 2.17
993 1019 7.630082 ACATTAGTACTCCCTGCATAAAGAAA 58.370 34.615 0.00 0.00 0.00 2.52
994 1020 7.195374 ACATTAGTACTCCCTGCATAAAGAA 57.805 36.000 0.00 0.00 0.00 2.52
995 1021 6.808321 ACATTAGTACTCCCTGCATAAAGA 57.192 37.500 0.00 0.00 0.00 2.52
996 1022 7.275920 AGAACATTAGTACTCCCTGCATAAAG 58.724 38.462 0.00 0.00 0.00 1.85
997 1023 7.195374 AGAACATTAGTACTCCCTGCATAAA 57.805 36.000 0.00 0.00 0.00 1.40
998 1024 6.183360 GGAGAACATTAGTACTCCCTGCATAA 60.183 42.308 0.00 0.00 41.89 1.90
999 1025 5.304614 GGAGAACATTAGTACTCCCTGCATA 59.695 44.000 0.00 0.00 41.89 3.14
1000 1026 4.101741 GGAGAACATTAGTACTCCCTGCAT 59.898 45.833 0.00 0.00 41.89 3.96
1001 1027 3.451178 GGAGAACATTAGTACTCCCTGCA 59.549 47.826 0.00 0.00 41.89 4.41
1002 1028 4.061357 GGAGAACATTAGTACTCCCTGC 57.939 50.000 0.00 0.00 41.89 4.85
1006 1032 3.698040 TCACGGGAGAACATTAGTACTCC 59.302 47.826 0.00 0.00 45.50 3.85
1007 1033 4.202030 CCTCACGGGAGAACATTAGTACTC 60.202 50.000 18.51 0.00 44.26 2.59
1008 1034 3.700038 CCTCACGGGAGAACATTAGTACT 59.300 47.826 18.51 0.00 44.26 2.73
1009 1035 3.446516 ACCTCACGGGAGAACATTAGTAC 59.553 47.826 18.51 0.00 44.26 2.73
1339 1366 4.269603 CACTCCACGCAAGATTCTCTTATG 59.730 45.833 0.00 0.00 33.78 1.90
1356 1383 5.316167 ACAAATTCTTCACATAGCACTCCA 58.684 37.500 0.00 0.00 0.00 3.86
1357 1384 5.446473 CGACAAATTCTTCACATAGCACTCC 60.446 44.000 0.00 0.00 0.00 3.85
1413 1440 6.305399 CCAGCAGTGAAACATTTATACAAACG 59.695 38.462 0.00 0.00 41.43 3.60
1435 1462 1.676746 ATAAGCACATGAGCTGCCAG 58.323 50.000 18.70 0.00 45.89 4.85
1451 1478 6.044637 AGGTCAAGGGGTAACAGTAACAATAA 59.955 38.462 0.00 0.00 39.74 1.40
1452 1479 5.548836 AGGTCAAGGGGTAACAGTAACAATA 59.451 40.000 0.00 0.00 39.74 1.90
1453 1480 4.352893 AGGTCAAGGGGTAACAGTAACAAT 59.647 41.667 0.00 0.00 39.74 2.71
1454 1481 3.717913 AGGTCAAGGGGTAACAGTAACAA 59.282 43.478 0.00 0.00 39.74 2.83
1456 1483 5.688814 ATAGGTCAAGGGGTAACAGTAAC 57.311 43.478 0.00 0.00 39.74 2.50
1460 1504 5.607171 AGGATAATAGGTCAAGGGGTAACAG 59.393 44.000 0.00 0.00 39.74 3.16
1478 1522 2.745281 GCACGTTGTGGCTTAAGGATAA 59.255 45.455 4.29 0.00 33.64 1.75
1537 1581 8.208224 TGAATACTCACAGGTGAAAAGAAGTAA 58.792 33.333 3.45 0.00 39.39 2.24
1614 1658 6.811665 CGAACCTATCACACAACAGAATAGAA 59.188 38.462 0.00 0.00 0.00 2.10
1970 2014 7.850193 AGGTTTGAAATGTATTTATGTGCCAT 58.150 30.769 0.00 0.00 0.00 4.40
1982 2026 9.137459 TCTTGGATGTAAAAGGTTTGAAATGTA 57.863 29.630 0.00 0.00 0.00 2.29
2037 2081 7.348080 TCTGCTAAGCTTCTACTTGCTTATA 57.652 36.000 0.00 1.43 46.43 0.98
2038 2082 6.227298 TCTGCTAAGCTTCTACTTGCTTAT 57.773 37.500 0.00 0.00 46.43 1.73
2173 2217 5.738619 TGTTGCTATTAACTCTGAGTGGA 57.261 39.130 11.71 3.47 0.00 4.02
2224 2268 7.040409 AGCACAGGTTACTTCTTTCTATTTTGG 60.040 37.037 0.00 0.00 0.00 3.28
2325 2369 6.758416 CAGCAAGCAATGTACTGTAGATAGAA 59.242 38.462 0.00 0.00 0.00 2.10
2412 2458 5.095145 ACAGCTATGATTGTGAGTGTCAT 57.905 39.130 0.00 0.00 36.60 3.06
2568 2719 4.321378 GGAAGTGAGGAAGATATACGAGCC 60.321 50.000 0.00 0.00 0.00 4.70
2578 2729 2.964209 ACAGACAGGAAGTGAGGAAGA 58.036 47.619 0.00 0.00 0.00 2.87
2713 2864 4.712122 AACTTAAACCACATATTGCCGG 57.288 40.909 0.00 0.00 0.00 6.13
2714 2865 7.476667 TCATAAACTTAAACCACATATTGCCG 58.523 34.615 0.00 0.00 0.00 5.69
2716 2867 8.755018 GCATCATAAACTTAAACCACATATTGC 58.245 33.333 0.00 0.00 0.00 3.56
2727 2878 7.753132 GGATGTTTGTCGCATCATAAACTTAAA 59.247 33.333 7.46 0.00 43.17 1.52
2756 2907 0.318699 CGAGTGTGAAGCAGTTCGGA 60.319 55.000 0.00 0.00 35.17 4.55
2759 2910 2.055100 GACTCGAGTGTGAAGCAGTTC 58.945 52.381 25.58 0.00 0.00 3.01
2788 2939 0.681243 GTCCCAGCTTCCCATGGAAC 60.681 60.000 15.22 0.00 36.71 3.62
2789 2940 1.139498 TGTCCCAGCTTCCCATGGAA 61.139 55.000 15.22 4.85 39.66 3.53
2790 2941 1.139498 TTGTCCCAGCTTCCCATGGA 61.139 55.000 15.22 0.00 39.02 3.41
2791 2942 0.682209 CTTGTCCCAGCTTCCCATGG 60.682 60.000 4.14 4.14 36.27 3.66
2792 2943 0.682209 CCTTGTCCCAGCTTCCCATG 60.682 60.000 0.00 0.00 0.00 3.66
2793 2944 1.142688 ACCTTGTCCCAGCTTCCCAT 61.143 55.000 0.00 0.00 0.00 4.00
2799 2950 0.178990 GTTTCCACCTTGTCCCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
2821 2972 8.520351 AGTAGAATACATTAAAAGTGGGCAAAC 58.480 33.333 0.00 0.00 46.26 2.93
2930 3083 1.878088 ACACACTGTACTCGACGTGAT 59.122 47.619 3.58 0.00 36.61 3.06
3014 3172 2.942804 TCAACCAAAGGTCAGCATCAA 58.057 42.857 0.00 0.00 33.12 2.57
3054 3212 9.346725 CAATAAGGTATCTGCTTTTCTTTTCAC 57.653 33.333 0.00 0.00 0.00 3.18
3080 3239 2.604046 ATCAGTTCAGATGCGTACCC 57.396 50.000 0.00 0.00 0.00 3.69
3087 3246 3.865446 TGCCACAGTATCAGTTCAGATG 58.135 45.455 0.00 0.00 0.00 2.90
3103 3262 0.895100 TTCAACCATGAGCCTGCCAC 60.895 55.000 0.00 0.00 36.78 5.01
3148 3307 5.478407 CCACAAAATGTTATCAGGAAACCC 58.522 41.667 0.00 0.00 0.00 4.11
3167 3326 3.576982 AGAGAGTCAAATTCGTACCCACA 59.423 43.478 0.00 0.00 0.00 4.17
3185 3344 9.319060 AGCTAGTATCATCCATAAATGAAGAGA 57.681 33.333 0.00 0.00 39.04 3.10
3226 3385 3.265791 CTGGATGTGGACTCTACTTTGC 58.734 50.000 0.00 0.00 0.00 3.68
3354 3516 3.402691 ATGTCCTGCGAGCGAGACG 62.403 63.158 11.05 0.00 31.75 4.18
3378 3540 0.467290 GAACCAACCAAGGTGAGGCA 60.467 55.000 10.04 0.00 42.25 4.75
3398 3560 2.076863 CAAACTGCTAGGGTGCACTAC 58.923 52.381 17.98 10.36 38.12 2.73
3446 3612 4.157472 TCAATTTCTTGTCACTTGTGCACA 59.843 37.500 17.42 17.42 33.87 4.57
3448 3614 4.979943 TCAATTTCTTGTCACTTGTGCA 57.020 36.364 0.00 0.00 33.87 4.57
3469 3635 9.605951 ATTTGCAAAATAGGTTCCATATCCTAT 57.394 29.630 17.19 0.00 45.53 2.57
3560 3729 4.396790 ACGGTCATCAGAAGTCTCTCTTAC 59.603 45.833 0.00 0.00 36.40 2.34
3590 3759 1.284657 GAGAGATGCACACATGTCCG 58.715 55.000 0.00 0.00 45.45 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.