Multiple sequence alignment - TraesCS7D01G507400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G507400 chr7D 100.000 5337 0 0 3970 9306 611598808 611593472 0.000000e+00 9856
1 TraesCS7D01G507400 chr7D 100.000 3667 0 0 1 3667 611602777 611599111 0.000000e+00 6772
2 TraesCS7D01G507400 chr7A 91.918 3019 156 40 719 3667 701539217 701536217 0.000000e+00 4143
3 TraesCS7D01G507400 chr7A 95.127 2442 101 16 3970 6404 701536199 701533769 0.000000e+00 3834
4 TraesCS7D01G507400 chr7A 91.915 2387 118 37 6619 8982 701533470 701531136 0.000000e+00 3269
5 TraesCS7D01G507400 chr7A 91.329 346 28 2 1418 1762 77890798 77891142 1.090000e-128 472
6 TraesCS7D01G507400 chr7A 86.310 336 43 3 5 338 701539760 701539426 6.870000e-96 363
7 TraesCS7D01G507400 chr7A 87.251 251 23 8 6371 6620 701533763 701533521 2.560000e-70 278
8 TraesCS7D01G507400 chr7A 90.323 155 14 1 546 700 701539427 701539274 1.580000e-47 202
9 TraesCS7D01G507400 chr7B 93.363 2667 119 23 3970 6622 700834764 700832142 0.000000e+00 3892
10 TraesCS7D01G507400 chr7B 90.438 2510 157 35 1150 3626 700837474 700835015 0.000000e+00 3229
11 TraesCS7D01G507400 chr7B 90.848 2393 146 40 6619 8969 700832090 700829729 0.000000e+00 3138
12 TraesCS7D01G507400 chr7B 84.637 716 74 21 1 685 700838769 700838059 0.000000e+00 680
13 TraesCS7D01G507400 chr7B 91.395 430 16 9 719 1135 700837945 700837524 3.770000e-158 569
14 TraesCS7D01G507400 chr7B 89.020 255 21 4 9054 9306 700829728 700829479 9.080000e-80 309
15 TraesCS7D01G507400 chr4A 92.486 346 24 2 1418 1762 597815343 597815687 2.330000e-135 494
16 TraesCS7D01G507400 chr4A 90.741 162 15 0 1771 1932 597815851 597816012 5.660000e-52 217
17 TraesCS7D01G507400 chr6B 92.647 340 23 2 1424 1762 506136205 506135867 1.090000e-133 488
18 TraesCS7D01G507400 chr6B 90.661 257 22 1 1771 2025 506135704 506135448 3.220000e-89 340
19 TraesCS7D01G507400 chr2B 91.908 346 26 2 1418 1762 61166198 61166542 5.050000e-132 483
20 TraesCS7D01G507400 chr2B 91.829 257 19 1 1771 2025 61166705 61166961 3.200000e-94 357
21 TraesCS7D01G507400 chr1B 91.329 346 28 2 1418 1762 53850948 53851292 1.090000e-128 472
22 TraesCS7D01G507400 chr1B 91.829 257 19 1 1771 2025 53851455 53851711 3.200000e-94 357
23 TraesCS7D01G507400 chr1A 90.000 340 32 2 1424 1762 31387097 31386759 1.110000e-118 438
24 TraesCS7D01G507400 chr1A 91.051 257 21 2 1771 2025 31386596 31386340 6.920000e-91 346
25 TraesCS7D01G507400 chr4B 89.118 340 32 3 1424 1762 236165940 236165605 1.450000e-112 418
26 TraesCS7D01G507400 chr4B 90.272 257 23 1 1771 2025 236165442 236165186 1.500000e-87 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G507400 chr7D 611593472 611602777 9305 True 8314.000000 9856 100.000000 1 9306 2 chr7D.!!$R1 9305
1 TraesCS7D01G507400 chr7A 701531136 701539760 8624 True 2014.833333 4143 90.474000 5 8982 6 chr7A.!!$R1 8977
2 TraesCS7D01G507400 chr7B 700829479 700838769 9290 True 1969.500000 3892 89.950167 1 9306 6 chr7B.!!$R1 9305
3 TraesCS7D01G507400 chr4A 597815343 597816012 669 False 355.500000 494 91.613500 1418 1932 2 chr4A.!!$F1 514
4 TraesCS7D01G507400 chr6B 506135448 506136205 757 True 414.000000 488 91.654000 1424 2025 2 chr6B.!!$R1 601
5 TraesCS7D01G507400 chr2B 61166198 61166961 763 False 420.000000 483 91.868500 1418 2025 2 chr2B.!!$F1 607
6 TraesCS7D01G507400 chr1B 53850948 53851711 763 False 414.500000 472 91.579000 1418 2025 2 chr1B.!!$F1 607
7 TraesCS7D01G507400 chr1A 31386340 31387097 757 True 392.000000 438 90.525500 1424 2025 2 chr1A.!!$R1 601
8 TraesCS7D01G507400 chr4B 236165186 236165940 754 True 376.500000 418 89.695000 1424 2025 2 chr4B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 627 0.105778 GGCCGGAGAGAAAGAGGATG 59.894 60.000 5.05 0.00 0.00 3.51 F
1289 1470 0.251354 TTCTGTCTGGAGCTCATGCC 59.749 55.000 17.19 0.00 40.80 4.40 F
2378 2730 0.398381 AGAGGGGCAAAACCAAGCAA 60.398 50.000 0.00 0.00 42.05 3.91 F
3315 3699 1.675641 GCTTTGTCCGCCAGATGGT 60.676 57.895 0.00 0.00 37.57 3.55 F
3606 3998 2.228138 AAAACTGCTGCATGTTGTGG 57.772 45.000 14.93 0.68 0.00 4.17 F
4448 5035 2.901840 ACGCTGGCACACCTGTTG 60.902 61.111 0.00 0.00 37.23 3.33 F
5356 5955 0.896226 GGACTACCAAGACTCGGCTT 59.104 55.000 0.00 0.00 35.97 4.35 F
5358 5957 2.494870 GGACTACCAAGACTCGGCTTTA 59.505 50.000 0.00 0.00 35.97 1.85 F
6425 7028 3.584406 AGAAGTCGAGTTCATCACTGG 57.416 47.619 29.60 0.00 35.01 4.00 F
6622 7312 1.173913 GGCCCTTATGTTGGTCACAC 58.826 55.000 0.00 0.00 38.61 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2716 1.150827 GCTCATTGCTTGGTTTTGCC 58.849 50.000 0.00 0.0 38.95 4.52 R
2975 3330 2.165998 GCCAAAAGGAATGTCTCAGCT 58.834 47.619 0.00 0.0 0.00 4.24 R
3590 3982 1.151221 TCCCACAACATGCAGCAGT 59.849 52.632 0.00 0.0 0.00 4.40 R
4433 5020 1.174712 ATGACAACAGGTGTGCCAGC 61.175 55.000 0.00 0.0 41.96 4.85 R
4496 5084 1.596752 TGCGGCGTGAAGTGAACAT 60.597 52.632 9.37 0.0 0.00 2.71 R
6188 6787 2.592102 ATGCACAGGGTGAGAACAAT 57.408 45.000 0.00 0.0 35.23 2.71 R
6535 7170 0.890542 TGGCAACCAGTAAGCAGCAG 60.891 55.000 0.00 0.0 0.00 4.24 R
6543 7178 1.143889 TGTTCCATGTGGCAACCAGTA 59.856 47.619 0.00 0.0 32.34 2.74 R
7467 8173 1.275010 TGAGCACTTAACATCGAGCCA 59.725 47.619 0.00 0.0 0.00 4.75 R
8581 9304 0.603569 ACGGTGAGGTACAGCAGAAG 59.396 55.000 0.00 0.0 45.96 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.975693 ATACACCAACCAAATTTGTCGAT 57.024 34.783 16.73 0.00 0.00 3.59
81 82 4.647853 TCGGTAGACACCATTAACTATGCT 59.352 41.667 0.00 0.00 46.14 3.79
83 84 6.492429 TCGGTAGACACCATTAACTATGCTAT 59.508 38.462 0.00 0.00 46.14 2.97
186 187 5.901413 ATCCATCATACTCATTCACAGGT 57.099 39.130 0.00 0.00 0.00 4.00
208 209 3.389656 TGTGTTCCAATCACCTAGACACA 59.610 43.478 4.63 4.63 35.25 3.72
221 222 1.298339 GACACACAAACTGCACGGC 60.298 57.895 0.00 0.00 0.00 5.68
223 224 2.822255 ACACAAACTGCACGGCGT 60.822 55.556 6.77 6.77 0.00 5.68
234 235 0.999228 GCACGGCGTAGAGATCATCG 60.999 60.000 14.22 0.00 0.00 3.84
250 251 3.564027 CGCCGATCTTTCGCCACC 61.564 66.667 0.00 0.00 44.12 4.61
275 276 2.476821 CTTTGCTGCAAAACTCCAAGG 58.523 47.619 25.93 10.19 32.75 3.61
296 297 5.386060 AGGTGATCTCATGTCGGACTATAA 58.614 41.667 9.88 0.00 0.00 0.98
313 314 2.721425 TAACCGGGCTAAATCCCTTG 57.279 50.000 6.32 0.00 44.30 3.61
315 316 1.828224 CCGGGCTAAATCCCTTGGC 60.828 63.158 0.00 0.00 44.30 4.52
317 318 1.103398 CGGGCTAAATCCCTTGGCAG 61.103 60.000 0.00 0.00 43.07 4.85
318 319 1.395045 GGGCTAAATCCCTTGGCAGC 61.395 60.000 0.00 0.00 43.07 5.25
319 320 1.728490 GGCTAAATCCCTTGGCAGCG 61.728 60.000 0.00 0.00 43.07 5.18
320 321 1.032114 GCTAAATCCCTTGGCAGCGT 61.032 55.000 0.00 0.00 41.04 5.07
321 322 0.734889 CTAAATCCCTTGGCAGCGTG 59.265 55.000 0.00 0.00 0.00 5.34
322 323 1.312371 TAAATCCCTTGGCAGCGTGC 61.312 55.000 1.92 1.92 44.08 5.34
348 349 2.832672 GCAATAGCCAACCTTCTTCG 57.167 50.000 0.00 0.00 33.58 3.79
349 350 2.084546 GCAATAGCCAACCTTCTTCGT 58.915 47.619 0.00 0.00 33.58 3.85
350 351 2.096013 GCAATAGCCAACCTTCTTCGTC 59.904 50.000 0.00 0.00 33.58 4.20
352 353 3.983044 ATAGCCAACCTTCTTCGTCTT 57.017 42.857 0.00 0.00 0.00 3.01
353 354 2.171341 AGCCAACCTTCTTCGTCTTC 57.829 50.000 0.00 0.00 0.00 2.87
354 355 1.416401 AGCCAACCTTCTTCGTCTTCA 59.584 47.619 0.00 0.00 0.00 3.02
356 357 2.833794 CCAACCTTCTTCGTCTTCACA 58.166 47.619 0.00 0.00 0.00 3.58
382 383 7.556844 TCTTGATCTACAACCTCTTTCCATAC 58.443 38.462 0.00 0.00 34.56 2.39
387 388 7.074653 TCTACAACCTCTTTCCATACAAAGT 57.925 36.000 0.00 0.00 35.25 2.66
391 392 6.431234 ACAACCTCTTTCCATACAAAGTCATC 59.569 38.462 0.00 0.00 35.25 2.92
401 402 7.405292 TCCATACAAAGTCATCTTCTCCATTT 58.595 34.615 0.00 0.00 32.90 2.32
406 407 4.559862 AGTCATCTTCTCCATTTCCGTT 57.440 40.909 0.00 0.00 0.00 4.44
408 409 6.049955 AGTCATCTTCTCCATTTCCGTTTA 57.950 37.500 0.00 0.00 0.00 2.01
411 412 7.021790 GTCATCTTCTCCATTTCCGTTTAAAC 58.978 38.462 8.35 8.35 0.00 2.01
414 415 3.075884 TCTCCATTTCCGTTTAAACCGG 58.924 45.455 12.66 15.64 46.83 5.28
430 431 1.278537 CCGGGGGTTACTTGGTTCTA 58.721 55.000 0.00 0.00 0.00 2.10
435 436 3.079578 GGGGTTACTTGGTTCTACTTGC 58.920 50.000 0.00 0.00 0.00 4.01
439 440 4.504340 GGTTACTTGGTTCTACTTGCTCCA 60.504 45.833 0.00 0.00 0.00 3.86
447 448 1.078497 TACTTGCTCCACCATGCGG 60.078 57.895 0.00 0.00 38.77 5.69
449 450 4.657408 TTGCTCCACCATGCGGCA 62.657 61.111 4.58 4.58 34.57 5.69
454 455 3.530260 CCACCATGCGGCATTCCC 61.530 66.667 13.81 0.00 34.57 3.97
455 456 2.440796 CACCATGCGGCATTCCCT 60.441 61.111 13.81 0.00 34.57 4.20
456 457 2.053865 CACCATGCGGCATTCCCTT 61.054 57.895 13.81 0.00 34.57 3.95
457 458 1.305213 ACCATGCGGCATTCCCTTT 60.305 52.632 13.81 0.00 34.57 3.11
458 459 1.142314 CCATGCGGCATTCCCTTTG 59.858 57.895 13.81 1.26 0.00 2.77
459 460 1.142314 CATGCGGCATTCCCTTTGG 59.858 57.895 13.81 0.00 0.00 3.28
460 461 1.305213 ATGCGGCATTCCCTTTGGT 60.305 52.632 10.23 0.00 0.00 3.67
461 462 1.606885 ATGCGGCATTCCCTTTGGTG 61.607 55.000 10.23 0.00 0.00 4.17
462 463 2.275380 GCGGCATTCCCTTTGGTGT 61.275 57.895 0.00 0.00 0.00 4.16
463 464 1.883021 CGGCATTCCCTTTGGTGTC 59.117 57.895 0.00 0.00 0.00 3.67
464 465 1.595093 CGGCATTCCCTTTGGTGTCC 61.595 60.000 0.00 0.00 0.00 4.02
465 466 1.595093 GGCATTCCCTTTGGTGTCCG 61.595 60.000 0.00 0.00 0.00 4.79
466 467 0.608035 GCATTCCCTTTGGTGTCCGA 60.608 55.000 0.00 0.00 0.00 4.55
467 468 1.904287 CATTCCCTTTGGTGTCCGAA 58.096 50.000 0.00 0.00 0.00 4.30
468 469 1.539827 CATTCCCTTTGGTGTCCGAAC 59.460 52.381 0.00 0.00 0.00 3.95
469 470 0.841289 TTCCCTTTGGTGTCCGAACT 59.159 50.000 0.00 0.00 0.00 3.01
470 471 0.395312 TCCCTTTGGTGTCCGAACTC 59.605 55.000 0.00 0.00 0.00 3.01
471 472 0.396811 CCCTTTGGTGTCCGAACTCT 59.603 55.000 0.00 0.00 0.00 3.24
472 473 1.608283 CCCTTTGGTGTCCGAACTCTC 60.608 57.143 0.00 0.00 0.00 3.20
473 474 1.344763 CCTTTGGTGTCCGAACTCTCT 59.655 52.381 0.00 0.00 0.00 3.10
484 485 4.735822 GTCCGAACTCTCTGATATCAAACG 59.264 45.833 6.90 5.20 0.00 3.60
492 493 4.877823 TCTCTGATATCAAACGCTTGCATT 59.122 37.500 6.90 0.00 32.14 3.56
493 494 4.912214 TCTGATATCAAACGCTTGCATTG 58.088 39.130 6.90 0.00 32.14 2.82
525 571 4.394712 GGGCAGACAGGTGACCGG 62.395 72.222 0.00 0.00 35.28 5.28
562 608 1.433837 GCCCGGGTAGTATTTGTGCG 61.434 60.000 24.63 0.00 0.00 5.34
581 627 0.105778 GGCCGGAGAGAAAGAGGATG 59.894 60.000 5.05 0.00 0.00 3.51
627 673 4.371786 TCCATGAACGAGATACATCTTGC 58.628 43.478 6.40 0.00 41.15 4.01
661 707 0.398522 ATCATGTGCGAGGGAGGGTA 60.399 55.000 0.00 0.00 0.00 3.69
688 736 5.048991 TGTGTTAGAGCGGAAAAAGGATTTC 60.049 40.000 0.00 0.00 37.28 2.17
974 1115 0.616111 TCCAGACCAGAGAAGCCCTC 60.616 60.000 0.00 0.00 42.28 4.30
980 1121 1.587054 CAGAGAAGCCCTCGACGTT 59.413 57.895 0.00 0.00 46.49 3.99
1185 1362 1.845809 GCTGGAGTGGCTTGTTGTCG 61.846 60.000 0.00 0.00 0.00 4.35
1273 1454 1.363744 GCAGCGATGTGTTAGCTTCT 58.636 50.000 1.22 0.00 39.48 2.85
1276 1457 2.346847 CAGCGATGTGTTAGCTTCTGTC 59.653 50.000 0.00 0.00 39.48 3.51
1289 1470 0.251354 TTCTGTCTGGAGCTCATGCC 59.749 55.000 17.19 0.00 40.80 4.40
1302 1483 2.510238 ATGCCGAGTTCAGCGCTC 60.510 61.111 7.13 0.00 0.00 5.03
1402 1583 3.008049 CCCTGCCTTACTGTACTTGTCTT 59.992 47.826 0.00 0.00 0.00 3.01
1403 1584 4.246458 CCTGCCTTACTGTACTTGTCTTC 58.754 47.826 0.00 0.00 0.00 2.87
1404 1585 4.021016 CCTGCCTTACTGTACTTGTCTTCT 60.021 45.833 0.00 0.00 0.00 2.85
1405 1586 5.135508 TGCCTTACTGTACTTGTCTTCTC 57.864 43.478 0.00 0.00 0.00 2.87
1408 1589 5.632959 CCTTACTGTACTTGTCTTCTCTCG 58.367 45.833 0.00 0.00 0.00 4.04
1431 1623 5.160641 GTTTTCAACGGCATGACATACAAT 58.839 37.500 0.00 0.00 0.00 2.71
1441 1633 5.450826 GGCATGACATACAATTCTGATGCAA 60.451 40.000 0.00 0.00 33.46 4.08
1557 1750 6.273825 TGCTATTCAGTATCTCGGTTTCTTC 58.726 40.000 0.00 0.00 0.00 2.87
1798 2147 4.178540 GTGCCTGGTGAATGAAATGATTG 58.821 43.478 0.00 0.00 0.00 2.67
1838 2187 6.790232 AACTTCCAAAATTGAGTTCCTGAA 57.210 33.333 0.00 0.00 0.00 3.02
1850 2199 3.565307 AGTTCCTGAACAGAAAATGCCA 58.435 40.909 12.21 0.00 43.47 4.92
1989 2340 7.154656 AGATAAATTTTGGGCACTTTCAGTTC 58.845 34.615 0.00 0.00 0.00 3.01
2069 2421 3.804325 GGACACATCAATCATACCACGAG 59.196 47.826 0.00 0.00 0.00 4.18
2310 2662 4.389374 ACATGTTGTACCTGTTTGGAGAG 58.611 43.478 0.00 0.00 39.71 3.20
2313 2665 5.818678 TGTTGTACCTGTTTGGAGAGTAT 57.181 39.130 0.00 0.00 39.71 2.12
2364 2716 1.511613 TTATCTGGGCCTTCAGAGGG 58.488 55.000 15.72 0.00 45.60 4.30
2378 2730 0.398381 AGAGGGGCAAAACCAAGCAA 60.398 50.000 0.00 0.00 42.05 3.91
2474 2826 5.937975 AATAAGGTGCCTGCAATTATTGT 57.062 34.783 16.60 2.02 33.06 2.71
2499 2853 6.575162 TTCTTTGGAGATAGTTTGCTTTCC 57.425 37.500 0.00 0.00 0.00 3.13
2510 2864 3.555547 AGTTTGCTTTCCGAATTTTGTGC 59.444 39.130 0.00 0.00 0.00 4.57
2511 2865 2.879002 TGCTTTCCGAATTTTGTGCA 57.121 40.000 0.00 0.00 0.00 4.57
2537 2891 7.639039 TGTTGACAAGTCTGTTTATCATTGAC 58.361 34.615 1.53 0.00 35.30 3.18
2797 3151 6.072728 CCTGTCATTTCGAACAGGTGATTTTA 60.073 38.462 21.10 0.00 43.38 1.52
2879 3233 8.158789 ACAATGATGAAATTCCCAAACAAATCT 58.841 29.630 0.00 0.00 0.00 2.40
2893 3247 7.307930 CCCAAACAAATCTTGGTTTATTCAAGC 60.308 37.037 1.23 0.00 38.84 4.01
2897 3251 6.043127 ACAAATCTTGGTTTATTCAAGCCCTT 59.957 34.615 0.00 0.00 40.82 3.95
2974 3329 5.261040 TGGAGATCCAGTTCAGGAAATTT 57.739 39.130 0.00 0.00 42.01 1.82
2975 3330 6.387192 TGGAGATCCAGTTCAGGAAATTTA 57.613 37.500 0.00 0.00 42.01 1.40
2976 3331 6.418101 TGGAGATCCAGTTCAGGAAATTTAG 58.582 40.000 0.00 0.00 42.01 1.85
2977 3332 5.298026 GGAGATCCAGTTCAGGAAATTTAGC 59.702 44.000 0.00 0.00 41.92 3.09
2978 3333 6.072199 AGATCCAGTTCAGGAAATTTAGCT 57.928 37.500 0.00 0.00 41.92 3.32
2979 3334 5.884792 AGATCCAGTTCAGGAAATTTAGCTG 59.115 40.000 0.00 0.00 41.92 4.24
2980 3335 5.241403 TCCAGTTCAGGAAATTTAGCTGA 57.759 39.130 0.00 0.00 33.93 4.26
2981 3336 5.248640 TCCAGTTCAGGAAATTTAGCTGAG 58.751 41.667 0.00 0.00 33.93 3.35
2988 3343 5.882557 TCAGGAAATTTAGCTGAGACATTCC 59.117 40.000 0.00 3.16 36.25 3.01
3001 3356 6.095440 GCTGAGACATTCCTTTTGGCTTTATA 59.905 38.462 0.00 0.00 40.12 0.98
3041 3396 5.821204 AGTTTTTGGAGATTTGACTTGTCG 58.179 37.500 0.00 0.00 0.00 4.35
3060 3415 8.362639 ACTTGTCGATAAAACCTTTACTGACTA 58.637 33.333 0.00 5.86 0.00 2.59
3085 3440 5.922544 GCGTCCTAGTTCAAACTAAGTAACA 59.077 40.000 4.32 0.00 40.70 2.41
3157 3512 4.161565 TGTGGAAATACGGATACAGAGCTT 59.838 41.667 0.00 0.00 0.00 3.74
3158 3513 5.116882 GTGGAAATACGGATACAGAGCTTT 58.883 41.667 0.00 0.00 0.00 3.51
3170 3553 2.224867 ACAGAGCTTTATGCCACCAAGT 60.225 45.455 0.00 0.00 44.23 3.16
3239 3623 8.816640 ACAGGAAGTGCATTGTTTTATTTTAG 57.183 30.769 0.00 0.00 0.00 1.85
3267 3651 4.142315 ACACATTTTCATGCTCCTACATGC 60.142 41.667 0.00 0.00 45.75 4.06
3279 3663 4.265073 CTCCTACATGCCAAGCTTAAGTT 58.735 43.478 0.00 0.00 0.00 2.66
3283 3667 6.889722 TCCTACATGCCAAGCTTAAGTTTTAT 59.110 34.615 0.00 0.00 0.00 1.40
3315 3699 1.675641 GCTTTGTCCGCCAGATGGT 60.676 57.895 0.00 0.00 37.57 3.55
3495 3879 8.947940 GCTGATAATTCAATAAAAGTAAGTGCG 58.052 33.333 0.00 0.00 0.00 5.34
3537 3921 4.682787 TCACATCATTGATAGTGACGGAC 58.317 43.478 19.25 0.00 36.20 4.79
3547 3939 4.763279 TGATAGTGACGGACAAGAACTGTA 59.237 41.667 0.00 0.00 38.84 2.74
3548 3940 5.242171 TGATAGTGACGGACAAGAACTGTAA 59.758 40.000 0.00 0.00 38.84 2.41
3579 3971 4.542662 GCTGTTGAGCTGTAACATATGG 57.457 45.455 7.80 4.16 42.52 2.74
3590 3982 6.719370 AGCTGTAACATATGGAAGGTCAAAAA 59.281 34.615 7.80 0.00 0.00 1.94
3606 3998 2.228138 AAAACTGCTGCATGTTGTGG 57.772 45.000 14.93 0.68 0.00 4.17
3633 4218 4.408182 AGTGCTTAGCCTGTTACATAGG 57.592 45.455 0.29 0.00 38.39 2.57
4023 4608 6.349363 GCTTTGCAGCAGGTTAATAAGTAACT 60.349 38.462 0.00 0.00 46.49 2.24
4050 4635 5.167845 TCAGCCAAGAAAAACAAAGTCAAC 58.832 37.500 0.00 0.00 0.00 3.18
4084 4669 8.186163 TGAGATGATATTTGCTTTGACAATCAC 58.814 33.333 0.00 0.00 0.00 3.06
4096 4681 7.083858 GCTTTGACAATCACATTAAGTTAGCA 58.916 34.615 0.00 0.00 0.00 3.49
4124 4711 8.977505 CAACACCTTATTTCAGTTTACATTTGG 58.022 33.333 0.00 0.00 0.00 3.28
4127 4714 9.757227 CACCTTATTTCAGTTTACATTTGGAAA 57.243 29.630 0.00 0.00 0.00 3.13
4128 4715 9.981114 ACCTTATTTCAGTTTACATTTGGAAAG 57.019 29.630 0.00 0.00 0.00 2.62
4269 4856 3.023832 CCCTCCAAGTTTGTTGTGTCTT 58.976 45.455 0.00 0.00 0.00 3.01
4279 4866 8.424731 CAAGTTTGTTGTGTCTTTACTTTTGTC 58.575 33.333 0.00 0.00 0.00 3.18
4286 4873 6.339730 TGTGTCTTTACTTTTGTCTCGGTTA 58.660 36.000 0.00 0.00 0.00 2.85
4298 4885 7.789273 TTTGTCTCGGTTATGTTTTAGTGAA 57.211 32.000 0.00 0.00 0.00 3.18
4303 4890 7.331193 GTCTCGGTTATGTTTTAGTGAATCAGT 59.669 37.037 0.00 0.00 0.00 3.41
4339 4926 8.632679 TGTTAGATTCTATGGCAATGGAAAATC 58.367 33.333 3.72 0.00 36.91 2.17
4433 5020 6.689178 AACATAAATTTTTACAGCAGCACG 57.311 33.333 0.00 0.00 0.00 5.34
4448 5035 2.901840 ACGCTGGCACACCTGTTG 60.902 61.111 0.00 0.00 37.23 3.33
4519 5107 2.203015 ACTTCACGCCGCACACTT 60.203 55.556 0.00 0.00 0.00 3.16
4563 5151 5.008613 GCATGTTTGTCTTCTTGTCAGGTTA 59.991 40.000 0.00 0.00 0.00 2.85
4761 5352 9.109393 CTTCCGTTTCATCATTTCCTTATTAGA 57.891 33.333 0.00 0.00 0.00 2.10
4886 5477 7.325660 TCATATCATGTTCTTCTGCTTTTCC 57.674 36.000 0.00 0.00 0.00 3.13
5026 5617 5.581085 CCAGTATTCTGTGCACCTTTACTAC 59.419 44.000 15.69 8.56 39.82 2.73
5054 5645 8.931775 GTTGAAAAGAAACCACAAACTGTTATT 58.068 29.630 0.00 0.00 0.00 1.40
5356 5955 0.896226 GGACTACCAAGACTCGGCTT 59.104 55.000 0.00 0.00 35.97 4.35
5358 5957 2.494870 GGACTACCAAGACTCGGCTTTA 59.505 50.000 0.00 0.00 35.97 1.85
5706 6305 5.606348 ACTCAGATATTGACTTGTCTCCC 57.394 43.478 2.35 0.00 0.00 4.30
5931 6530 7.846107 GTGCTTGTATTGTTTGATACAGTATCG 59.154 37.037 14.67 0.00 41.89 2.92
6075 6674 5.814188 CAGTTTAGCAAGACAGATAGATGCA 59.186 40.000 0.00 0.00 39.42 3.96
6188 6787 7.775053 ATCTTTGGTAGGCTTTCATTGTTTA 57.225 32.000 0.00 0.00 0.00 2.01
6328 6929 8.107095 AGGCAAATAAATACTACTTTCAGTCCA 58.893 33.333 0.00 0.00 0.00 4.02
6329 6930 8.182227 GGCAAATAAATACTACTTTCAGTCCAC 58.818 37.037 0.00 0.00 0.00 4.02
6425 7028 3.584406 AGAAGTCGAGTTCATCACTGG 57.416 47.619 29.60 0.00 35.01 4.00
6491 7125 8.914011 TCTGTTGATAAAACTATGCTAGAGCTA 58.086 33.333 2.72 0.00 42.66 3.32
6586 7221 7.754625 ACAGCTTCTGAAAAACGTAAACTTTA 58.245 30.769 0.29 0.00 35.18 1.85
6601 7236 6.735063 CGTAAACTTTACCGACATGTTCATTC 59.265 38.462 0.00 0.00 0.00 2.67
6622 7312 1.173913 GGCCCTTATGTTGGTCACAC 58.826 55.000 0.00 0.00 38.61 3.82
6683 7373 2.473984 GCAAAGAGTTGAATGCAAGCAC 59.526 45.455 0.00 0.00 38.63 4.40
6778 7468 8.120465 GGATGACAAACATACGTAGTTTATTGG 58.880 37.037 17.11 10.81 45.11 3.16
7125 7815 9.841295 AGGTAATGTACTTTTGTCTCTGTTTTA 57.159 29.630 0.00 0.00 0.00 1.52
7131 7821 9.052759 TGTACTTTTGTCTCTGTTTTAATCCTC 57.947 33.333 0.00 0.00 0.00 3.71
7153 7843 6.647895 CCTCAAAATTTCTGCTGCAAAGTAAT 59.352 34.615 3.02 0.00 0.00 1.89
7204 7896 8.362464 TGCTAGTTTCTCAGGTTAGAATTAGA 57.638 34.615 0.00 0.00 35.48 2.10
7228 7920 8.857098 AGACGGTGTATATAATAGAATGTGTGT 58.143 33.333 0.00 0.00 0.00 3.72
7264 7956 9.846248 ATTTAGTTATTGACTGAGCATTTTGAC 57.154 29.630 0.00 0.00 39.48 3.18
7273 7965 6.017523 TGACTGAGCATTTTGACGAACATTTA 60.018 34.615 0.00 0.00 0.00 1.40
7276 7968 6.370593 TGAGCATTTTGACGAACATTTAGAC 58.629 36.000 0.00 0.00 0.00 2.59
7280 7972 6.251376 GCATTTTGACGAACATTTAGACCATC 59.749 38.462 0.00 0.00 0.00 3.51
7281 7973 5.873179 TTTGACGAACATTTAGACCATCC 57.127 39.130 0.00 0.00 0.00 3.51
7282 7974 4.545208 TGACGAACATTTAGACCATCCA 57.455 40.909 0.00 0.00 0.00 3.41
7283 7975 5.097742 TGACGAACATTTAGACCATCCAT 57.902 39.130 0.00 0.00 0.00 3.41
7284 7976 6.228616 TGACGAACATTTAGACCATCCATA 57.771 37.500 0.00 0.00 0.00 2.74
7285 7977 6.046593 TGACGAACATTTAGACCATCCATAC 58.953 40.000 0.00 0.00 0.00 2.39
7286 7978 5.984725 ACGAACATTTAGACCATCCATACA 58.015 37.500 0.00 0.00 0.00 2.29
7287 7979 6.411376 ACGAACATTTAGACCATCCATACAA 58.589 36.000 0.00 0.00 0.00 2.41
7288 7980 6.882140 ACGAACATTTAGACCATCCATACAAA 59.118 34.615 0.00 0.00 0.00 2.83
7293 7985 7.833682 ACATTTAGACCATCCATACAAACATGA 59.166 33.333 0.00 0.00 0.00 3.07
7369 8065 9.612066 TGACAAATATAGTGCAATATGAAGTGA 57.388 29.630 16.61 2.15 0.00 3.41
7372 8068 9.750882 CAAATATAGTGCAATATGAAGTGATCG 57.249 33.333 16.61 0.00 0.00 3.69
7374 8070 8.694975 ATATAGTGCAATATGAAGTGATCGTC 57.305 34.615 16.61 0.00 0.00 4.20
7375 8071 4.758688 AGTGCAATATGAAGTGATCGTCA 58.241 39.130 0.00 0.00 36.61 4.35
7377 8073 5.643348 AGTGCAATATGAAGTGATCGTCAAA 59.357 36.000 0.00 0.00 35.90 2.69
7378 8074 5.961843 GTGCAATATGAAGTGATCGTCAAAG 59.038 40.000 0.00 0.00 35.90 2.77
7383 8089 2.807967 TGAAGTGATCGTCAAAGCTTGG 59.192 45.455 0.00 0.00 0.00 3.61
7397 8103 5.359576 TCAAAGCTTGGTGACTGTAAATGTT 59.640 36.000 0.00 0.00 0.00 2.71
7398 8104 5.852282 AAGCTTGGTGACTGTAAATGTTT 57.148 34.783 0.00 0.00 0.00 2.83
7402 8108 7.777095 AGCTTGGTGACTGTAAATGTTTTAAA 58.223 30.769 0.00 0.00 0.00 1.52
7408 8114 8.357402 GGTGACTGTAAATGTTTTAAAGGACAT 58.643 33.333 0.54 0.54 38.08 3.06
7422 8128 9.757227 TTTTAAAGGACATTTATTTGTGACTGG 57.243 29.630 0.00 0.00 33.40 4.00
7424 8130 7.595819 AAAGGACATTTATTTGTGACTGGAA 57.404 32.000 0.00 0.00 0.00 3.53
7426 8132 5.711976 AGGACATTTATTTGTGACTGGAAGG 59.288 40.000 0.00 0.00 39.30 3.46
7429 8135 6.306987 ACATTTATTTGTGACTGGAAGGAGT 58.693 36.000 0.00 0.00 39.30 3.85
7433 8139 4.602340 TTTGTGACTGGAAGGAGTACTC 57.398 45.455 14.87 14.87 39.30 2.59
7442 8148 6.702329 ACTGGAAGGAGTACTCATTTAAGTG 58.298 40.000 25.42 16.67 39.30 3.16
7467 8173 7.877097 TGATATTTTTGTTTTGTGCATAAGCCT 59.123 29.630 0.00 0.00 41.13 4.58
7469 8175 3.383620 TTGTTTTGTGCATAAGCCTGG 57.616 42.857 0.00 0.00 41.13 4.45
7472 8178 1.176527 TTTGTGCATAAGCCTGGCTC 58.823 50.000 23.61 10.05 38.25 4.70
7475 8181 0.533755 GTGCATAAGCCTGGCTCGAT 60.534 55.000 23.61 15.54 38.25 3.59
7476 8182 0.533531 TGCATAAGCCTGGCTCGATG 60.534 55.000 27.22 27.22 38.25 3.84
7478 8184 1.959042 CATAAGCCTGGCTCGATGTT 58.041 50.000 23.61 7.67 38.25 2.71
7488 8195 1.661112 GGCTCGATGTTAAGTGCTCAC 59.339 52.381 0.00 0.00 0.00 3.51
7490 8197 2.930887 GCTCGATGTTAAGTGCTCACCA 60.931 50.000 0.00 0.00 0.00 4.17
7498 8205 4.455533 TGTTAAGTGCTCACCATCACATTC 59.544 41.667 0.00 0.00 35.76 2.67
7503 8210 2.224843 TGCTCACCATCACATTCCTGTT 60.225 45.455 0.00 0.00 31.62 3.16
7851 8561 4.772624 TCTTCATAGTAAGCACTGACCTGT 59.227 41.667 0.00 0.00 36.14 4.00
7882 8592 1.428448 CAGATTCAGCGTTCACCGAA 58.572 50.000 0.00 0.00 39.56 4.30
8102 8812 7.778083 TCTGAAGGTATGTGATAACGTGTATT 58.222 34.615 0.00 0.00 0.00 1.89
8103 8813 7.704899 TCTGAAGGTATGTGATAACGTGTATTG 59.295 37.037 0.00 0.00 0.00 1.90
8104 8814 6.759356 TGAAGGTATGTGATAACGTGTATTGG 59.241 38.462 0.00 0.00 0.00 3.16
8108 8818 4.873768 TGTGATAACGTGTATTGGCATG 57.126 40.909 0.00 0.00 0.00 4.06
8125 8835 3.509575 GGCATGTTAAACCCATTGAGTCA 59.490 43.478 0.00 0.00 0.00 3.41
8126 8836 4.485163 GCATGTTAAACCCATTGAGTCAC 58.515 43.478 0.00 0.00 0.00 3.67
8127 8837 4.618227 GCATGTTAAACCCATTGAGTCACC 60.618 45.833 0.00 0.00 0.00 4.02
8152 8867 7.364056 CCAAGCATATTTCATCTTCCTTGGAAA 60.364 37.037 9.79 0.00 46.78 3.13
8320 9035 5.342259 GCAGTTTTAGTTGCAGGTAATTTCG 59.658 40.000 0.00 0.00 40.02 3.46
8383 9100 9.825109 AGACTTAGTTGGAGCTAGAAAATATTC 57.175 33.333 0.00 0.00 35.70 1.75
8490 9213 5.157940 TGCAGCTTCTTCTGAACTCTTAT 57.842 39.130 0.00 0.00 36.19 1.73
8491 9214 5.555017 TGCAGCTTCTTCTGAACTCTTATT 58.445 37.500 0.00 0.00 36.19 1.40
8523 9246 7.931948 ACTAAATATCCTATTTCCTTGTGGTCG 59.068 37.037 0.00 0.00 34.23 4.79
8555 9278 5.916883 CCGATTTCTGAAATCAATGCATACC 59.083 40.000 31.36 10.90 45.94 2.73
8581 9304 0.037590 TCCATGTGGCTGTTGTACCC 59.962 55.000 0.00 0.00 34.44 3.69
8764 9493 3.809832 AGAAATATTCGGGAATGTCGCAG 59.190 43.478 4.21 0.00 32.50 5.18
8865 9597 6.567891 CGGTGTTTTGACTTCTAAAATCCCTC 60.568 42.308 0.00 0.00 30.62 4.30
8907 9640 5.224135 GCTATCGAAGAACTTATCACCCTC 58.776 45.833 0.00 0.00 43.58 4.30
8952 9685 5.473931 TCGAGATTGAGAAGTCCTGAAAAG 58.526 41.667 0.00 0.00 0.00 2.27
8969 9702 4.040706 TGAAAAGCAAATGGATTCCAAGCT 59.959 37.500 19.16 19.16 40.21 3.74
8970 9703 3.604875 AAGCAAATGGATTCCAAGCTG 57.395 42.857 23.14 15.60 39.11 4.24
8982 9715 5.163195 GGATTCCAAGCTGAGGATTAAGGTA 60.163 44.000 8.83 0.00 34.56 3.08
8983 9716 5.772393 TTCCAAGCTGAGGATTAAGGTAA 57.228 39.130 8.83 0.00 34.56 2.85
8984 9717 5.099042 TCCAAGCTGAGGATTAAGGTAAC 57.901 43.478 4.11 0.00 0.00 2.50
8985 9718 4.534500 TCCAAGCTGAGGATTAAGGTAACA 59.466 41.667 4.11 0.00 41.41 2.41
8986 9719 5.191722 TCCAAGCTGAGGATTAAGGTAACAT 59.808 40.000 4.11 0.00 41.41 2.71
8987 9720 5.297776 CCAAGCTGAGGATTAAGGTAACATG 59.702 44.000 0.00 0.00 41.41 3.21
8988 9721 5.700402 AGCTGAGGATTAAGGTAACATGT 57.300 39.130 0.00 0.00 41.41 3.21
8989 9722 6.808321 AGCTGAGGATTAAGGTAACATGTA 57.192 37.500 0.00 0.00 41.41 2.29
8990 9723 7.195374 AGCTGAGGATTAAGGTAACATGTAA 57.805 36.000 0.00 0.00 41.41 2.41
8991 9724 7.630082 AGCTGAGGATTAAGGTAACATGTAAA 58.370 34.615 0.00 0.00 41.41 2.01
8992 9725 8.107095 AGCTGAGGATTAAGGTAACATGTAAAA 58.893 33.333 0.00 0.00 41.41 1.52
8993 9726 8.736244 GCTGAGGATTAAGGTAACATGTAAAAA 58.264 33.333 0.00 0.00 41.41 1.94
8995 9728 9.575868 TGAGGATTAAGGTAACATGTAAAAACA 57.424 29.630 0.00 0.00 41.41 2.83
9004 9737 9.744468 AGGTAACATGTAAAAACAACTTTGATC 57.256 29.630 0.00 0.00 41.41 2.92
9005 9738 8.974408 GGTAACATGTAAAAACAACTTTGATCC 58.026 33.333 0.00 0.00 0.00 3.36
9006 9739 8.974408 GTAACATGTAAAAACAACTTTGATCCC 58.026 33.333 0.00 0.00 0.00 3.85
9007 9740 7.118496 ACATGTAAAAACAACTTTGATCCCA 57.882 32.000 0.00 0.00 0.00 4.37
9008 9741 7.209475 ACATGTAAAAACAACTTTGATCCCAG 58.791 34.615 0.00 0.00 0.00 4.45
9009 9742 6.783708 TGTAAAAACAACTTTGATCCCAGT 57.216 33.333 0.00 0.00 0.00 4.00
9010 9743 6.801575 TGTAAAAACAACTTTGATCCCAGTC 58.198 36.000 0.00 0.00 0.00 3.51
9011 9744 4.937201 AAAACAACTTTGATCCCAGTCC 57.063 40.909 0.00 0.00 0.00 3.85
9012 9745 2.586648 ACAACTTTGATCCCAGTCCC 57.413 50.000 0.00 0.00 0.00 4.46
9013 9746 1.780309 ACAACTTTGATCCCAGTCCCA 59.220 47.619 0.00 0.00 0.00 4.37
9014 9747 2.176798 ACAACTTTGATCCCAGTCCCAA 59.823 45.455 0.00 0.00 0.00 4.12
9015 9748 2.558359 CAACTTTGATCCCAGTCCCAAC 59.442 50.000 0.00 0.00 0.00 3.77
9016 9749 2.065799 ACTTTGATCCCAGTCCCAACT 58.934 47.619 0.00 0.00 35.60 3.16
9017 9750 3.256704 ACTTTGATCCCAGTCCCAACTA 58.743 45.455 0.00 0.00 33.25 2.24
9018 9751 3.009143 ACTTTGATCCCAGTCCCAACTAC 59.991 47.826 0.00 0.00 33.25 2.73
9019 9752 2.642171 TGATCCCAGTCCCAACTACT 57.358 50.000 0.00 0.00 33.25 2.57
9020 9753 3.769189 TGATCCCAGTCCCAACTACTA 57.231 47.619 0.00 0.00 33.25 1.82
9021 9754 3.371965 TGATCCCAGTCCCAACTACTAC 58.628 50.000 0.00 0.00 33.25 2.73
9022 9755 2.242882 TCCCAGTCCCAACTACTACC 57.757 55.000 0.00 0.00 33.25 3.18
9023 9756 0.822164 CCCAGTCCCAACTACTACCG 59.178 60.000 0.00 0.00 33.25 4.02
9024 9757 0.175073 CCAGTCCCAACTACTACCGC 59.825 60.000 0.00 0.00 33.25 5.68
9025 9758 1.183549 CAGTCCCAACTACTACCGCT 58.816 55.000 0.00 0.00 33.25 5.52
9026 9759 1.549170 CAGTCCCAACTACTACCGCTT 59.451 52.381 0.00 0.00 33.25 4.68
9027 9760 1.549170 AGTCCCAACTACTACCGCTTG 59.451 52.381 0.00 0.00 32.59 4.01
9028 9761 1.274447 GTCCCAACTACTACCGCTTGT 59.726 52.381 0.00 0.00 0.00 3.16
9029 9762 2.493278 GTCCCAACTACTACCGCTTGTA 59.507 50.000 0.00 0.00 0.00 2.41
9030 9763 7.615455 CAGTCCCAACTACTACCGCTTGTAG 62.615 52.000 8.30 8.30 42.47 2.74
9039 9772 2.094762 ACCGCTTGTAGAATGGTGAC 57.905 50.000 0.00 0.00 0.00 3.67
9040 9773 1.623811 ACCGCTTGTAGAATGGTGACT 59.376 47.619 0.00 0.00 0.00 3.41
9041 9774 2.829720 ACCGCTTGTAGAATGGTGACTA 59.170 45.455 0.00 0.00 0.00 2.59
9042 9775 3.451178 ACCGCTTGTAGAATGGTGACTAT 59.549 43.478 0.00 0.00 0.00 2.12
9043 9776 4.081087 ACCGCTTGTAGAATGGTGACTATT 60.081 41.667 0.00 0.00 0.00 1.73
9044 9777 4.271049 CCGCTTGTAGAATGGTGACTATTG 59.729 45.833 0.00 0.00 0.00 1.90
9045 9778 4.271049 CGCTTGTAGAATGGTGACTATTGG 59.729 45.833 0.00 0.00 0.00 3.16
9046 9779 5.428253 GCTTGTAGAATGGTGACTATTGGA 58.572 41.667 0.00 0.00 0.00 3.53
9047 9780 6.058183 GCTTGTAGAATGGTGACTATTGGAT 58.942 40.000 0.00 0.00 0.00 3.41
9048 9781 6.017605 GCTTGTAGAATGGTGACTATTGGATG 60.018 42.308 0.00 0.00 0.00 3.51
9049 9782 6.560003 TGTAGAATGGTGACTATTGGATGT 57.440 37.500 0.00 0.00 0.00 3.06
9050 9783 6.957631 TGTAGAATGGTGACTATTGGATGTT 58.042 36.000 0.00 0.00 0.00 2.71
9051 9784 6.823182 TGTAGAATGGTGACTATTGGATGTTG 59.177 38.462 0.00 0.00 0.00 3.33
9052 9785 5.195940 AGAATGGTGACTATTGGATGTTGG 58.804 41.667 0.00 0.00 0.00 3.77
9053 9786 4.860802 ATGGTGACTATTGGATGTTGGA 57.139 40.909 0.00 0.00 0.00 3.53
9054 9787 4.649267 TGGTGACTATTGGATGTTGGAA 57.351 40.909 0.00 0.00 0.00 3.53
9055 9788 4.991776 TGGTGACTATTGGATGTTGGAAA 58.008 39.130 0.00 0.00 0.00 3.13
9056 9789 5.389520 TGGTGACTATTGGATGTTGGAAAA 58.610 37.500 0.00 0.00 0.00 2.29
9057 9790 6.015918 TGGTGACTATTGGATGTTGGAAAAT 58.984 36.000 0.00 0.00 0.00 1.82
9058 9791 6.071447 TGGTGACTATTGGATGTTGGAAAATG 60.071 38.462 0.00 0.00 0.00 2.32
9059 9792 5.807011 GTGACTATTGGATGTTGGAAAATGC 59.193 40.000 0.00 0.00 0.00 3.56
9060 9793 5.716228 TGACTATTGGATGTTGGAAAATGCT 59.284 36.000 0.00 0.00 0.00 3.79
9061 9794 6.889177 TGACTATTGGATGTTGGAAAATGCTA 59.111 34.615 0.00 0.00 0.00 3.49
9062 9795 7.560991 TGACTATTGGATGTTGGAAAATGCTAT 59.439 33.333 0.00 0.00 0.00 2.97
9063 9796 7.945134 ACTATTGGATGTTGGAAAATGCTATC 58.055 34.615 0.00 0.00 0.00 2.08
9069 9802 7.615365 TGGATGTTGGAAAATGCTATCTAAAGT 59.385 33.333 0.00 0.00 0.00 2.66
9105 9838 6.036517 ACGCATAAATCAGAGTCAATTGTCTC 59.963 38.462 20.79 20.79 0.00 3.36
9106 9839 6.417327 GCATAAATCAGAGTCAATTGTCTCG 58.583 40.000 21.68 17.37 35.78 4.04
9110 9843 3.914312 TCAGAGTCAATTGTCTCGGTTC 58.086 45.455 23.75 6.72 35.78 3.62
9114 9847 3.919216 AGTCAATTGTCTCGGTTCTCTG 58.081 45.455 5.13 0.00 0.00 3.35
9195 9930 4.065088 TGTCCACACTTGAAGCTATGTTC 58.935 43.478 0.00 0.00 0.00 3.18
9196 9931 4.065088 GTCCACACTTGAAGCTATGTTCA 58.935 43.478 0.00 0.00 34.56 3.18
9197 9932 4.697352 GTCCACACTTGAAGCTATGTTCAT 59.303 41.667 0.00 0.00 36.34 2.57
9198 9933 4.937620 TCCACACTTGAAGCTATGTTCATC 59.062 41.667 0.00 0.00 36.34 2.92
9199 9934 4.940046 CCACACTTGAAGCTATGTTCATCT 59.060 41.667 0.00 0.00 36.34 2.90
9200 9935 5.413833 CCACACTTGAAGCTATGTTCATCTT 59.586 40.000 0.00 0.00 36.34 2.40
9201 9936 6.312487 CACACTTGAAGCTATGTTCATCTTG 58.688 40.000 0.00 0.00 36.34 3.02
9202 9937 6.000219 ACACTTGAAGCTATGTTCATCTTGT 59.000 36.000 0.00 0.00 36.34 3.16
9203 9938 7.118245 CACACTTGAAGCTATGTTCATCTTGTA 59.882 37.037 0.00 0.00 36.34 2.41
9204 9939 7.332926 ACACTTGAAGCTATGTTCATCTTGTAG 59.667 37.037 0.00 0.00 36.34 2.74
9207 9942 8.621532 TTGAAGCTATGTTCATCTTGTAGTTT 57.378 30.769 0.00 0.00 36.34 2.66
9208 9943 8.621532 TGAAGCTATGTTCATCTTGTAGTTTT 57.378 30.769 0.00 0.00 31.31 2.43
9209 9944 8.506437 TGAAGCTATGTTCATCTTGTAGTTTTG 58.494 33.333 0.00 0.00 31.31 2.44
9210 9945 8.621532 AAGCTATGTTCATCTTGTAGTTTTGA 57.378 30.769 0.00 0.00 0.00 2.69
9211 9946 8.798859 AGCTATGTTCATCTTGTAGTTTTGAT 57.201 30.769 0.00 0.00 0.00 2.57
9213 9948 8.668353 GCTATGTTCATCTTGTAGTTTTGATGA 58.332 33.333 0.00 0.00 42.11 2.92
9216 9951 8.620116 TGTTCATCTTGTAGTTTTGATGATGA 57.380 30.769 0.00 0.00 42.92 2.92
9220 9955 8.939929 TCATCTTGTAGTTTTGATGATGAGTTC 58.060 33.333 0.00 0.00 39.91 3.01
9222 9957 8.315391 TCTTGTAGTTTTGATGATGAGTTCTG 57.685 34.615 0.00 0.00 0.00 3.02
9223 9958 7.933577 TCTTGTAGTTTTGATGATGAGTTCTGT 59.066 33.333 0.00 0.00 0.00 3.41
9224 9959 7.425577 TGTAGTTTTGATGATGAGTTCTGTG 57.574 36.000 0.00 0.00 0.00 3.66
9225 9960 5.368256 AGTTTTGATGATGAGTTCTGTGC 57.632 39.130 0.00 0.00 0.00 4.57
9226 9961 5.068636 AGTTTTGATGATGAGTTCTGTGCT 58.931 37.500 0.00 0.00 0.00 4.40
9227 9962 6.233434 AGTTTTGATGATGAGTTCTGTGCTA 58.767 36.000 0.00 0.00 0.00 3.49
9243 9978 3.392285 TGTGCTATGTTATCTGGCTGGAT 59.608 43.478 0.00 0.00 0.00 3.41
9269 10004 3.920231 TCCAGGGTCATCTTCATCTTG 57.080 47.619 0.00 0.00 0.00 3.02
9283 10018 9.604626 CATCTTCATCTTGTAGTTGTTCTTTTC 57.395 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.825085 ACTATCGACAAATTTGGTTGGTGT 59.175 37.500 21.74 10.74 32.50 4.16
7 8 6.362283 GGTTCAACTATCGACAAATTTGGTTG 59.638 38.462 21.74 21.04 35.56 3.77
16 17 2.673043 GCTCGGGTTCAACTATCGACAA 60.673 50.000 0.00 0.00 0.00 3.18
23 24 0.543410 TGGAGGCTCGGGTTCAACTA 60.543 55.000 8.69 0.00 0.00 2.24
81 82 8.375493 AGGTACCAGATAACTTCTTGAACATA 57.625 34.615 15.94 0.00 29.93 2.29
83 84 6.681729 AGGTACCAGATAACTTCTTGAACA 57.318 37.500 15.94 0.00 29.93 3.18
96 97 4.654724 GCTAGGGTCTTAAAGGTACCAGAT 59.345 45.833 15.94 1.76 34.83 2.90
186 187 3.389656 TGTGTCTAGGTGATTGGAACACA 59.610 43.478 4.63 4.63 39.29 3.72
208 209 0.944311 CTCTACGCCGTGCAGTTTGT 60.944 55.000 0.00 0.00 0.00 2.83
221 222 2.166741 GATCGGCGATGATCTCTACG 57.833 55.000 29.20 0.00 41.26 3.51
260 261 3.152341 AGATCACCTTGGAGTTTTGCAG 58.848 45.455 0.00 0.00 0.00 4.41
264 265 4.990526 ACATGAGATCACCTTGGAGTTTT 58.009 39.130 0.00 0.00 0.00 2.43
275 276 5.462405 GGTTATAGTCCGACATGAGATCAC 58.538 45.833 0.00 0.00 0.00 3.06
315 316 1.585267 TATTGCCAAGGTGCACGCTG 61.585 55.000 11.45 10.19 41.88 5.18
317 318 1.137404 CTATTGCCAAGGTGCACGC 59.863 57.895 11.45 9.18 41.88 5.34
318 319 1.137404 GCTATTGCCAAGGTGCACG 59.863 57.895 11.45 0.00 41.88 5.34
337 338 4.310769 AGATGTGAAGACGAAGAAGGTTG 58.689 43.478 0.00 0.00 0.00 3.77
339 340 4.039245 TCAAGATGTGAAGACGAAGAAGGT 59.961 41.667 0.00 0.00 31.51 3.50
342 343 6.030548 AGATCAAGATGTGAAGACGAAGAA 57.969 37.500 0.00 0.00 40.50 2.52
343 344 5.651387 AGATCAAGATGTGAAGACGAAGA 57.349 39.130 0.00 0.00 40.50 2.87
344 345 6.325596 TGTAGATCAAGATGTGAAGACGAAG 58.674 40.000 0.00 0.00 40.50 3.79
347 348 5.289675 GGTTGTAGATCAAGATGTGAAGACG 59.710 44.000 0.00 0.00 40.50 4.18
348 349 6.402222 AGGTTGTAGATCAAGATGTGAAGAC 58.598 40.000 0.00 0.00 40.50 3.01
349 350 6.438741 AGAGGTTGTAGATCAAGATGTGAAGA 59.561 38.462 0.00 0.00 40.50 2.87
350 351 6.638610 AGAGGTTGTAGATCAAGATGTGAAG 58.361 40.000 0.00 0.00 40.50 3.02
352 353 6.611613 AAGAGGTTGTAGATCAAGATGTGA 57.388 37.500 0.00 0.00 41.67 3.58
353 354 6.314896 GGAAAGAGGTTGTAGATCAAGATGTG 59.685 42.308 0.00 0.00 36.66 3.21
354 355 6.013379 TGGAAAGAGGTTGTAGATCAAGATGT 60.013 38.462 0.00 0.00 36.66 3.06
356 357 6.627087 TGGAAAGAGGTTGTAGATCAAGAT 57.373 37.500 0.00 0.00 36.66 2.40
382 383 4.697352 ACGGAAATGGAGAAGATGACTTTG 59.303 41.667 0.00 0.00 36.39 2.77
387 388 6.150474 GGTTTAAACGGAAATGGAGAAGATGA 59.850 38.462 12.07 0.00 0.00 2.92
391 392 4.719040 CGGTTTAAACGGAAATGGAGAAG 58.281 43.478 18.29 0.00 0.00 2.85
406 407 1.779700 ACCAAGTAACCCCCGGTTTAA 59.220 47.619 0.00 0.00 44.33 1.52
408 409 0.557238 AACCAAGTAACCCCCGGTTT 59.443 50.000 0.00 0.00 44.33 3.27
411 412 1.065926 GTAGAACCAAGTAACCCCCGG 60.066 57.143 0.00 0.00 0.00 5.73
414 415 3.079578 GCAAGTAGAACCAAGTAACCCC 58.920 50.000 0.00 0.00 0.00 4.95
430 431 2.360350 CCGCATGGTGGAGCAAGT 60.360 61.111 0.00 0.00 34.74 3.16
435 436 2.484062 GGAATGCCGCATGGTGGAG 61.484 63.158 6.63 0.00 34.74 3.86
439 440 1.305213 AAAGGGAATGCCGCATGGT 60.305 52.632 6.63 0.00 37.67 3.55
447 448 0.608035 TCGGACACCAAAGGGAATGC 60.608 55.000 0.00 0.00 38.05 3.56
449 450 1.423921 AGTTCGGACACCAAAGGGAAT 59.576 47.619 0.00 0.00 38.05 3.01
454 455 2.035961 TCAGAGAGTTCGGACACCAAAG 59.964 50.000 0.00 0.00 0.00 2.77
455 456 2.036387 TCAGAGAGTTCGGACACCAAA 58.964 47.619 0.00 0.00 0.00 3.28
456 457 1.699730 TCAGAGAGTTCGGACACCAA 58.300 50.000 0.00 0.00 0.00 3.67
457 458 1.924731 ATCAGAGAGTTCGGACACCA 58.075 50.000 0.00 0.00 30.24 4.17
458 459 3.632604 TGATATCAGAGAGTTCGGACACC 59.367 47.826 0.00 0.00 30.24 4.16
459 460 4.902443 TGATATCAGAGAGTTCGGACAC 57.098 45.455 0.00 0.00 30.24 3.67
460 461 5.651530 GTTTGATATCAGAGAGTTCGGACA 58.348 41.667 5.39 0.00 30.24 4.02
461 462 4.735822 CGTTTGATATCAGAGAGTTCGGAC 59.264 45.833 5.39 0.00 30.24 4.79
462 463 4.733815 GCGTTTGATATCAGAGAGTTCGGA 60.734 45.833 5.39 0.00 32.06 4.55
463 464 3.487574 GCGTTTGATATCAGAGAGTTCGG 59.512 47.826 5.39 0.00 0.00 4.30
464 465 4.355437 AGCGTTTGATATCAGAGAGTTCG 58.645 43.478 5.39 2.53 0.00 3.95
465 466 5.501574 GCAAGCGTTTGATATCAGAGAGTTC 60.502 44.000 16.78 0.00 36.36 3.01
466 467 4.331168 GCAAGCGTTTGATATCAGAGAGTT 59.669 41.667 16.78 0.00 36.36 3.01
467 468 3.868077 GCAAGCGTTTGATATCAGAGAGT 59.132 43.478 16.78 0.00 36.36 3.24
468 469 3.867493 TGCAAGCGTTTGATATCAGAGAG 59.133 43.478 16.78 0.37 36.36 3.20
469 470 3.860641 TGCAAGCGTTTGATATCAGAGA 58.139 40.909 16.78 0.00 36.36 3.10
470 471 4.808077 ATGCAAGCGTTTGATATCAGAG 57.192 40.909 16.78 2.99 36.36 3.35
471 472 4.731483 GCAATGCAAGCGTTTGATATCAGA 60.731 41.667 16.78 0.00 36.36 3.27
472 473 3.484649 GCAATGCAAGCGTTTGATATCAG 59.515 43.478 16.78 6.87 36.36 2.90
473 474 3.437428 GCAATGCAAGCGTTTGATATCA 58.563 40.909 16.78 0.00 36.36 2.15
510 511 3.311110 TCCCGGTCACCTGTCTGC 61.311 66.667 0.00 0.00 0.00 4.26
562 608 0.105778 CATCCTCTTTCTCTCCGGCC 59.894 60.000 0.00 0.00 0.00 6.13
581 627 1.073923 CAATACCCATCCCCTAGCACC 59.926 57.143 0.00 0.00 0.00 5.01
627 673 5.289193 CGCACATGATGAGTTTATTTTTGGG 59.711 40.000 0.00 0.00 0.00 4.12
661 707 3.502211 CCTTTTTCCGCTCTAACACACAT 59.498 43.478 0.00 0.00 0.00 3.21
737 865 2.577593 GGCCAGACCCGACTGTAC 59.422 66.667 0.00 0.00 36.30 2.90
868 1001 2.361737 GGGGAGCAAAGGGTGAGC 60.362 66.667 0.00 0.00 0.00 4.26
1166 1342 1.845809 CGACAACAAGCCACTCCAGC 61.846 60.000 0.00 0.00 0.00 4.85
1168 1344 0.753867 TACGACAACAAGCCACTCCA 59.246 50.000 0.00 0.00 0.00 3.86
1169 1345 1.429463 CTACGACAACAAGCCACTCC 58.571 55.000 0.00 0.00 0.00 3.85
1176 1353 0.320374 TCCCTGGCTACGACAACAAG 59.680 55.000 0.00 0.00 0.00 3.16
1179 1356 1.448013 GCTCCCTGGCTACGACAAC 60.448 63.158 0.00 0.00 0.00 3.32
1180 1357 1.605058 GAGCTCCCTGGCTACGACAA 61.605 60.000 0.87 0.00 43.20 3.18
1185 1362 3.438017 CTGCGAGCTCCCTGGCTAC 62.438 68.421 8.47 0.00 42.55 3.58
1273 1454 1.953231 CTCGGCATGAGCTCCAGACA 61.953 60.000 12.15 0.00 41.70 3.41
1289 1470 0.371645 GGAATTGAGCGCTGAACTCG 59.628 55.000 18.48 0.00 36.94 4.18
1408 1589 4.153958 TGTATGTCATGCCGTTGAAAAC 57.846 40.909 0.00 0.00 45.31 2.43
1420 1606 6.093909 TCGTTTGCATCAGAATTGTATGTCAT 59.906 34.615 0.00 0.00 0.00 3.06
1422 1608 5.734498 GTCGTTTGCATCAGAATTGTATGTC 59.266 40.000 0.00 0.00 0.00 3.06
1428 1620 4.161333 GGAAGTCGTTTGCATCAGAATTG 58.839 43.478 3.83 0.00 0.00 2.32
1431 1623 2.844946 TGGAAGTCGTTTGCATCAGAA 58.155 42.857 0.00 0.00 31.59 3.02
1798 2147 5.475564 TGGAAGTTTGGAATAAGTAGCCAAC 59.524 40.000 0.00 0.00 41.08 3.77
1838 2187 4.401022 TCTGAGACAATGGCATTTTCTGT 58.599 39.130 28.30 16.62 29.98 3.41
1850 2199 8.532186 AGATCTACAAGTACATCTGAGACAAT 57.468 34.615 0.00 0.00 0.00 2.71
1899 2248 6.546034 ACATTACAAGTGCACCTATTATTCCC 59.454 38.462 14.63 0.00 0.00 3.97
1989 2340 8.753497 AAACAAGGAAAAGGAGCTAATATAGG 57.247 34.615 0.00 0.00 0.00 2.57
2168 2520 6.213600 ACATGATATAGTGGGGTCTGGATAAC 59.786 42.308 0.00 0.00 0.00 1.89
2313 2665 8.704668 TCACCTTTAATATCTGCACTGAGAATA 58.295 33.333 0.00 0.00 0.00 1.75
2364 2716 1.150827 GCTCATTGCTTGGTTTTGCC 58.849 50.000 0.00 0.00 38.95 4.52
2367 2719 2.825861 CAGGCTCATTGCTTGGTTTT 57.174 45.000 0.00 0.00 43.90 2.43
2378 2730 4.641989 GTGATATGTTTCCAACAGGCTCAT 59.358 41.667 0.00 0.00 45.95 2.90
2474 2826 7.433680 GGAAAGCAAACTATCTCCAAAGAAAA 58.566 34.615 0.00 0.00 34.49 2.29
2499 2853 4.503734 ACTTGTCAACATGCACAAAATTCG 59.496 37.500 0.00 0.00 32.16 3.34
2510 2864 8.291740 TCAATGATAAACAGACTTGTCAACATG 58.708 33.333 3.49 0.00 36.23 3.21
2511 2865 8.292448 GTCAATGATAAACAGACTTGTCAACAT 58.708 33.333 3.49 0.00 36.23 2.71
2537 2891 6.348498 TCACTACCAATAATGACCTGATGTG 58.652 40.000 0.00 0.00 0.00 3.21
2612 2966 5.716703 ACTGATGAATCCCAACCCTTAAAAG 59.283 40.000 0.00 0.00 0.00 2.27
2879 3233 6.987403 AAGTTAAGGGCTTGAATAAACCAA 57.013 33.333 0.00 0.00 0.00 3.67
2893 3247 8.801882 TCATAATCACAAACCTAAGTTAAGGG 57.198 34.615 0.00 0.00 41.32 3.95
2944 3298 8.101309 TCCTGAACTGGATCTCCAAATTAATA 57.899 34.615 0.00 0.00 46.97 0.98
2952 3306 4.934797 AATTTCCTGAACTGGATCTCCA 57.065 40.909 0.00 0.00 45.30 3.86
2971 3326 5.105595 GCCAAAAGGAATGTCTCAGCTAAAT 60.106 40.000 0.00 0.00 0.00 1.40
2972 3327 4.218417 GCCAAAAGGAATGTCTCAGCTAAA 59.782 41.667 0.00 0.00 0.00 1.85
2974 3329 3.009473 AGCCAAAAGGAATGTCTCAGCTA 59.991 43.478 0.00 0.00 0.00 3.32
2975 3330 2.165998 GCCAAAAGGAATGTCTCAGCT 58.834 47.619 0.00 0.00 0.00 4.24
2976 3331 2.165998 AGCCAAAAGGAATGTCTCAGC 58.834 47.619 0.00 0.00 0.00 4.26
2977 3332 4.861102 AAAGCCAAAAGGAATGTCTCAG 57.139 40.909 0.00 0.00 0.00 3.35
2978 3333 9.866655 ATATATAAAGCCAAAAGGAATGTCTCA 57.133 29.630 0.00 0.00 0.00 3.27
3041 3396 7.219372 GACGCTAGTCAGTAAAGGTTTTATC 57.781 40.000 0.00 0.00 46.32 1.75
3060 3415 4.868314 ACTTAGTTTGAACTAGGACGCT 57.132 40.909 16.81 0.00 42.04 5.07
3157 3512 5.344743 TGAAAAACAACTTGGTGGCATAA 57.655 34.783 0.00 0.00 0.00 1.90
3158 3513 5.295950 CATGAAAAACAACTTGGTGGCATA 58.704 37.500 0.00 0.00 0.00 3.14
3239 3623 8.208718 TGTAGGAGCATGAAAATGTGTATTAC 57.791 34.615 0.00 0.00 0.00 1.89
3259 3643 5.391312 AAAACTTAAGCTTGGCATGTAGG 57.609 39.130 9.86 0.00 0.00 3.18
3315 3699 1.839994 CCAGATGCTAGAAGGGGTTGA 59.160 52.381 0.00 0.00 0.00 3.18
3529 3913 4.989168 AGATTTACAGTTCTTGTCCGTCAC 59.011 41.667 0.00 0.00 41.29 3.67
3561 3953 5.186198 ACCTTCCATATGTTACAGCTCAAC 58.814 41.667 1.24 1.47 0.00 3.18
3579 3971 2.869233 TGCAGCAGTTTTTGACCTTC 57.131 45.000 0.00 0.00 0.00 3.46
3590 3982 1.151221 TCCCACAACATGCAGCAGT 59.849 52.632 0.00 0.00 0.00 4.40
3606 3998 1.196012 ACAGGCTAAGCACTAGGTCC 58.804 55.000 0.00 0.00 0.00 4.46
3983 4568 2.028165 GCAAAGCTCGATTCAGTACGAC 59.972 50.000 0.00 0.00 34.82 4.34
3986 4571 2.222908 GCTGCAAAGCTCGATTCAGTAC 60.223 50.000 0.00 0.00 0.00 2.73
4008 4593 9.969001 TTGGCTGATTTAGTTACTTATTAACCT 57.031 29.630 0.00 0.00 41.10 3.50
4023 4608 7.551585 TGACTTTGTTTTTCTTGGCTGATTTA 58.448 30.769 0.00 0.00 0.00 1.40
4084 4669 5.376854 AAGGTGTTGCTGCTAACTTAATG 57.623 39.130 0.00 0.00 0.00 1.90
4096 4681 6.952773 TGTAAACTGAAATAAGGTGTTGCT 57.047 33.333 0.00 0.00 0.00 3.91
4269 4856 9.328845 ACTAAAACATAACCGAGACAAAAGTAA 57.671 29.630 0.00 0.00 0.00 2.24
4279 4866 7.545965 AGACTGATTCACTAAAACATAACCGAG 59.454 37.037 0.00 0.00 0.00 4.63
4303 4890 9.679661 TGCCATAGAATCTAACAACAAAATAGA 57.320 29.630 0.00 0.00 0.00 1.98
4433 5020 1.174712 ATGACAACAGGTGTGCCAGC 61.175 55.000 0.00 0.00 41.96 4.85
4467 5054 5.649831 ACTTCAATAGCATTTTCAGAGGACC 59.350 40.000 0.00 0.00 0.00 4.46
4496 5084 1.596752 TGCGGCGTGAAGTGAACAT 60.597 52.632 9.37 0.00 0.00 2.71
4519 5107 3.073798 TGCAGGAATTCAGGGTAAAGACA 59.926 43.478 7.93 0.00 0.00 3.41
4710 5301 9.574516 AGGCGATAAAGGAATAGTAATCAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
4715 5306 6.310711 CGGAAGGCGATAAAGGAATAGTAATC 59.689 42.308 0.00 0.00 0.00 1.75
4761 5352 8.199449 TGCAGAGAAGAAGAAAATGTCAAAATT 58.801 29.630 0.00 0.00 0.00 1.82
4886 5477 7.678947 ACTTCCAGAAGAAATTACACAGATG 57.321 36.000 14.19 0.00 40.79 2.90
5026 5617 5.925969 ACAGTTTGTGGTTTCTTTTCAACAG 59.074 36.000 0.00 0.00 0.00 3.16
5309 5901 2.776536 AGCTTGTTCTGATCTAGCCCAT 59.223 45.455 15.31 0.00 35.09 4.00
5374 5973 8.275758 GGAATTTCTTAAAGAAGAGGTAGGGAT 58.724 37.037 0.00 0.00 42.66 3.85
5706 6305 3.506067 ACTTTTAAAATCCCAGACCTGCG 59.494 43.478 0.09 0.00 0.00 5.18
5931 6530 6.677781 TCAAATCTACGGACCATTTTCATC 57.322 37.500 0.00 0.00 0.00 2.92
6075 6674 5.694458 TGTTATAGATACATCAACGCGCATT 59.306 36.000 5.73 0.00 0.00 3.56
6188 6787 2.592102 ATGCACAGGGTGAGAACAAT 57.408 45.000 0.00 0.00 35.23 2.71
6464 7098 8.260818 AGCTCTAGCATAGTTTTATCAACAGAA 58.739 33.333 4.54 0.00 45.16 3.02
6535 7170 0.890542 TGGCAACCAGTAAGCAGCAG 60.891 55.000 0.00 0.00 0.00 4.24
6543 7178 1.143889 TGTTCCATGTGGCAACCAGTA 59.856 47.619 0.00 0.00 32.34 2.74
6586 7221 1.453155 GCCAGAATGAACATGTCGGT 58.547 50.000 0.00 0.00 39.69 4.69
6601 7236 1.271871 TGTGACCAACATAAGGGCCAG 60.272 52.381 6.18 0.00 32.36 4.85
6622 7312 6.507023 ACTTCATGGAAAGCAAAACTGTAAG 58.493 36.000 0.00 0.00 42.29 2.34
6683 7373 3.931468 CACTATCAGTCTTGAGTTGCCTG 59.069 47.826 0.00 0.00 36.61 4.85
6733 7423 7.946219 TGTCATCCATAATGGCAGAAGATTATT 59.054 33.333 0.00 0.00 44.97 1.40
6756 7446 7.799784 ACACCAATAAACTACGTATGTTTGTC 58.200 34.615 22.43 0.00 38.02 3.18
6778 7468 9.787532 TGAGCTAAATAATAAATTGCAGAACAC 57.212 29.630 0.00 0.00 0.00 3.32
6835 7525 5.079643 ACAAAGCTTGATTAACCCTGTCAT 58.920 37.500 0.00 0.00 0.00 3.06
7109 7799 9.801873 TTTTGAGGATTAAAACAGAGACAAAAG 57.198 29.630 0.00 0.00 32.49 2.27
7119 7809 7.171337 GCAGCAGAAATTTTGAGGATTAAAACA 59.829 33.333 0.00 0.00 30.64 2.83
7125 7815 4.877378 TGCAGCAGAAATTTTGAGGATT 57.123 36.364 0.00 0.00 0.00 3.01
7131 7821 7.410800 TCATTACTTTGCAGCAGAAATTTTG 57.589 32.000 0.00 0.00 0.00 2.44
7140 7830 4.081406 ACAGGATTCATTACTTTGCAGCA 58.919 39.130 0.00 0.00 0.00 4.41
7153 7843 6.245408 AGTTAATGCAAGGTAACAGGATTCA 58.755 36.000 16.22 0.00 36.57 2.57
7182 7872 7.395489 ACCGTCTAATTCTAACCTGAGAAACTA 59.605 37.037 0.00 0.00 38.89 2.24
7187 7877 5.014858 ACACCGTCTAATTCTAACCTGAGA 58.985 41.667 0.00 0.00 0.00 3.27
7238 7930 9.846248 GTCAAAATGCTCAGTCAATAACTAAAT 57.154 29.630 0.00 0.00 36.07 1.40
7241 7933 6.871492 TCGTCAAAATGCTCAGTCAATAACTA 59.129 34.615 0.00 0.00 36.07 2.24
7243 7935 5.927030 TCGTCAAAATGCTCAGTCAATAAC 58.073 37.500 0.00 0.00 0.00 1.89
7245 7937 5.468409 TGTTCGTCAAAATGCTCAGTCAATA 59.532 36.000 0.00 0.00 0.00 1.90
7246 7938 4.275689 TGTTCGTCAAAATGCTCAGTCAAT 59.724 37.500 0.00 0.00 0.00 2.57
7247 7939 3.625313 TGTTCGTCAAAATGCTCAGTCAA 59.375 39.130 0.00 0.00 0.00 3.18
7248 7940 3.202097 TGTTCGTCAAAATGCTCAGTCA 58.798 40.909 0.00 0.00 0.00 3.41
7250 7942 4.836125 AATGTTCGTCAAAATGCTCAGT 57.164 36.364 0.00 0.00 0.00 3.41
7251 7943 6.521133 GTCTAAATGTTCGTCAAAATGCTCAG 59.479 38.462 0.00 0.00 0.00 3.35
7252 7944 6.370593 GTCTAAATGTTCGTCAAAATGCTCA 58.629 36.000 0.00 0.00 0.00 4.26
7253 7945 5.795441 GGTCTAAATGTTCGTCAAAATGCTC 59.205 40.000 0.00 0.00 0.00 4.26
7255 7947 5.457140 TGGTCTAAATGTTCGTCAAAATGC 58.543 37.500 0.00 0.00 0.00 3.56
7256 7948 6.747280 GGATGGTCTAAATGTTCGTCAAAATG 59.253 38.462 0.00 0.00 0.00 2.32
7264 7956 6.918892 TTGTATGGATGGTCTAAATGTTCG 57.081 37.500 0.00 0.00 0.00 3.95
7273 7965 7.141758 ACTATCATGTTTGTATGGATGGTCT 57.858 36.000 0.00 0.00 0.00 3.85
7276 7968 8.908786 ACTTACTATCATGTTTGTATGGATGG 57.091 34.615 12.48 0.00 0.00 3.51
7354 8050 5.469373 TTGACGATCACTTCATATTGCAC 57.531 39.130 0.00 0.00 0.00 4.57
7356 8052 4.966366 GCTTTGACGATCACTTCATATTGC 59.034 41.667 0.00 0.00 0.00 3.56
7358 8054 6.183360 CCAAGCTTTGACGATCACTTCATATT 60.183 38.462 0.00 0.00 0.00 1.28
7360 8056 4.631377 CCAAGCTTTGACGATCACTTCATA 59.369 41.667 0.00 0.00 0.00 2.15
7362 8058 2.807967 CCAAGCTTTGACGATCACTTCA 59.192 45.455 0.00 0.00 0.00 3.02
7363 8059 2.808543 ACCAAGCTTTGACGATCACTTC 59.191 45.455 4.25 0.00 0.00 3.01
7365 8061 2.146342 CACCAAGCTTTGACGATCACT 58.854 47.619 4.25 0.00 0.00 3.41
7367 8063 2.143122 GTCACCAAGCTTTGACGATCA 58.857 47.619 13.94 0.00 33.25 2.92
7368 8064 2.158449 CAGTCACCAAGCTTTGACGATC 59.842 50.000 20.31 2.97 45.71 3.69
7369 8065 2.146342 CAGTCACCAAGCTTTGACGAT 58.854 47.619 20.31 6.47 45.71 3.73
7371 8067 1.299541 ACAGTCACCAAGCTTTGACG 58.700 50.000 20.31 17.59 45.71 4.35
7372 8068 4.893424 TTTACAGTCACCAAGCTTTGAC 57.107 40.909 19.34 19.34 42.17 3.18
7374 8070 5.186996 ACATTTACAGTCACCAAGCTTTG 57.813 39.130 0.00 0.00 0.00 2.77
7375 8071 5.852282 AACATTTACAGTCACCAAGCTTT 57.148 34.783 0.00 0.00 0.00 3.51
7377 8073 5.852282 AAAACATTTACAGTCACCAAGCT 57.148 34.783 0.00 0.00 0.00 3.74
7378 8074 7.169140 CCTTTAAAACATTTACAGTCACCAAGC 59.831 37.037 0.00 0.00 0.00 4.01
7383 8089 9.744468 AATGTCCTTTAAAACATTTACAGTCAC 57.256 29.630 10.98 0.00 42.00 3.67
7397 8103 9.137459 TCCAGTCACAAATAAATGTCCTTTAAA 57.863 29.630 0.00 0.00 33.15 1.52
7398 8104 8.698973 TCCAGTCACAAATAAATGTCCTTTAA 57.301 30.769 0.00 0.00 33.15 1.52
7402 8108 5.711976 CCTTCCAGTCACAAATAAATGTCCT 59.288 40.000 0.00 0.00 0.00 3.85
7408 8114 7.074653 AGTACTCCTTCCAGTCACAAATAAA 57.925 36.000 0.00 0.00 0.00 1.40
7442 8148 8.170553 CAGGCTTATGCACAAAACAAAAATATC 58.829 33.333 2.72 0.00 41.91 1.63
7467 8173 1.275010 TGAGCACTTAACATCGAGCCA 59.725 47.619 0.00 0.00 0.00 4.75
7469 8175 1.661112 GGTGAGCACTTAACATCGAGC 59.339 52.381 0.16 0.00 0.00 5.03
7472 8178 3.062639 GTGATGGTGAGCACTTAACATCG 59.937 47.826 13.75 0.00 37.97 3.84
7475 8181 3.483808 TGTGATGGTGAGCACTTAACA 57.516 42.857 0.16 0.00 39.36 2.41
7476 8182 4.142600 GGAATGTGATGGTGAGCACTTAAC 60.143 45.833 0.16 0.00 39.36 2.01
7478 8184 3.264193 AGGAATGTGATGGTGAGCACTTA 59.736 43.478 0.16 0.00 39.36 2.24
7488 8195 5.711976 ACCTAAAGAAACAGGAATGTGATGG 59.288 40.000 0.00 0.00 35.76 3.51
7490 8197 6.149474 CGAACCTAAAGAAACAGGAATGTGAT 59.851 38.462 0.00 0.00 35.76 3.06
7503 8210 4.874966 TCGGTTTGTTTCGAACCTAAAGAA 59.125 37.500 14.49 0.00 43.70 2.52
7830 8539 6.599356 TTACAGGTCAGTGCTTACTATGAA 57.401 37.500 0.00 0.00 0.00 2.57
7882 8592 4.490706 ACGGAGATAGGCCTTTTAGGTAT 58.509 43.478 12.58 0.00 37.80 2.73
8102 8812 3.505386 ACTCAATGGGTTTAACATGCCA 58.495 40.909 0.00 0.00 0.00 4.92
8103 8813 3.509575 TGACTCAATGGGTTTAACATGCC 59.490 43.478 0.00 0.00 0.00 4.40
8104 8814 4.485163 GTGACTCAATGGGTTTAACATGC 58.515 43.478 0.00 0.00 0.00 4.06
8108 8818 4.558697 GCTTGGTGACTCAATGGGTTTAAC 60.559 45.833 0.00 0.00 0.00 2.01
8125 8835 5.361857 CCAAGGAAGATGAAATATGCTTGGT 59.638 40.000 14.43 0.00 46.96 3.67
8127 8837 6.704289 TCCAAGGAAGATGAAATATGCTTG 57.296 37.500 0.00 0.00 39.64 4.01
8152 8867 5.584649 CCGTATTGTTTCACCATGTATCTGT 59.415 40.000 0.00 0.00 0.00 3.41
8320 9035 4.493547 TCATTTGGCAAATCGGATGAAAC 58.506 39.130 22.02 0.00 0.00 2.78
8383 9100 5.351465 ACAATGTTAGCGAATTGAGGTACAG 59.649 40.000 9.63 0.00 37.26 2.74
8523 9246 2.762535 TTCAGAAATCGGGACCTGTC 57.237 50.000 0.00 0.00 0.00 3.51
8581 9304 0.603569 ACGGTGAGGTACAGCAGAAG 59.396 55.000 0.00 0.00 45.96 2.85
8925 9658 5.414360 TCAGGACTTCTCAATCTCGAAATG 58.586 41.667 0.00 0.00 0.00 2.32
8952 9685 2.159142 CCTCAGCTTGGAATCCATTTGC 60.159 50.000 1.39 8.50 31.53 3.68
8969 9702 9.575868 TGTTTTTACATGTTACCTTAATCCTCA 57.424 29.630 2.30 0.00 0.00 3.86
8982 9715 7.560368 TGGGATCAAAGTTGTTTTTACATGTT 58.440 30.769 2.30 0.00 0.00 2.71
8983 9716 7.118496 TGGGATCAAAGTTGTTTTTACATGT 57.882 32.000 2.69 2.69 0.00 3.21
8984 9717 7.209475 ACTGGGATCAAAGTTGTTTTTACATG 58.791 34.615 0.00 0.00 0.00 3.21
8985 9718 7.360113 ACTGGGATCAAAGTTGTTTTTACAT 57.640 32.000 0.00 0.00 0.00 2.29
8986 9719 6.183360 GGACTGGGATCAAAGTTGTTTTTACA 60.183 38.462 0.00 0.00 0.00 2.41
8987 9720 6.213677 GGACTGGGATCAAAGTTGTTTTTAC 58.786 40.000 0.00 0.00 0.00 2.01
8988 9721 5.303333 GGGACTGGGATCAAAGTTGTTTTTA 59.697 40.000 0.00 0.00 0.00 1.52
8989 9722 4.100963 GGGACTGGGATCAAAGTTGTTTTT 59.899 41.667 0.00 0.00 0.00 1.94
8990 9723 3.641436 GGGACTGGGATCAAAGTTGTTTT 59.359 43.478 0.00 0.00 0.00 2.43
8991 9724 3.230976 GGGACTGGGATCAAAGTTGTTT 58.769 45.455 0.00 0.00 0.00 2.83
8992 9725 2.176798 TGGGACTGGGATCAAAGTTGTT 59.823 45.455 0.00 0.00 0.00 2.83
8993 9726 1.780309 TGGGACTGGGATCAAAGTTGT 59.220 47.619 0.00 0.00 0.00 3.32
8994 9727 2.558359 GTTGGGACTGGGATCAAAGTTG 59.442 50.000 0.00 0.00 0.00 3.16
8995 9728 2.447047 AGTTGGGACTGGGATCAAAGTT 59.553 45.455 0.00 0.00 33.99 2.66
8996 9729 2.065799 AGTTGGGACTGGGATCAAAGT 58.934 47.619 0.00 0.00 33.99 2.66
8997 9730 2.887151 AGTTGGGACTGGGATCAAAG 57.113 50.000 0.00 0.00 33.99 2.77
8998 9731 3.256704 AGTAGTTGGGACTGGGATCAAA 58.743 45.455 0.00 0.00 36.60 2.69
8999 9732 2.915869 AGTAGTTGGGACTGGGATCAA 58.084 47.619 0.00 0.00 36.60 2.57
9000 9733 2.642171 AGTAGTTGGGACTGGGATCA 57.358 50.000 0.00 0.00 36.60 2.92
9001 9734 2.699321 GGTAGTAGTTGGGACTGGGATC 59.301 54.545 0.00 0.00 36.60 3.36
9002 9735 2.760581 GGTAGTAGTTGGGACTGGGAT 58.239 52.381 0.00 0.00 36.60 3.85
9003 9736 1.617804 CGGTAGTAGTTGGGACTGGGA 60.618 57.143 0.00 0.00 36.60 4.37
9004 9737 0.822164 CGGTAGTAGTTGGGACTGGG 59.178 60.000 0.00 0.00 36.60 4.45
9005 9738 0.175073 GCGGTAGTAGTTGGGACTGG 59.825 60.000 0.00 0.00 36.60 4.00
9006 9739 1.183549 AGCGGTAGTAGTTGGGACTG 58.816 55.000 0.00 0.00 36.60 3.51
9007 9740 1.549170 CAAGCGGTAGTAGTTGGGACT 59.451 52.381 0.00 0.00 39.97 3.85
9008 9741 1.274447 ACAAGCGGTAGTAGTTGGGAC 59.726 52.381 0.00 0.00 0.00 4.46
9009 9742 1.636148 ACAAGCGGTAGTAGTTGGGA 58.364 50.000 0.00 0.00 0.00 4.37
9010 9743 3.160777 CTACAAGCGGTAGTAGTTGGG 57.839 52.381 9.61 0.00 43.73 4.12
9019 9752 2.829720 AGTCACCATTCTACAAGCGGTA 59.170 45.455 0.00 0.00 0.00 4.02
9020 9753 1.623811 AGTCACCATTCTACAAGCGGT 59.376 47.619 0.00 0.00 0.00 5.68
9021 9754 2.386661 AGTCACCATTCTACAAGCGG 57.613 50.000 0.00 0.00 0.00 5.52
9022 9755 4.271049 CCAATAGTCACCATTCTACAAGCG 59.729 45.833 0.00 0.00 0.00 4.68
9023 9756 5.428253 TCCAATAGTCACCATTCTACAAGC 58.572 41.667 0.00 0.00 0.00 4.01
9024 9757 7.050377 ACATCCAATAGTCACCATTCTACAAG 58.950 38.462 0.00 0.00 0.00 3.16
9025 9758 6.957631 ACATCCAATAGTCACCATTCTACAA 58.042 36.000 0.00 0.00 0.00 2.41
9026 9759 6.560003 ACATCCAATAGTCACCATTCTACA 57.440 37.500 0.00 0.00 0.00 2.74
9027 9760 6.260936 CCAACATCCAATAGTCACCATTCTAC 59.739 42.308 0.00 0.00 0.00 2.59
9028 9761 6.157820 TCCAACATCCAATAGTCACCATTCTA 59.842 38.462 0.00 0.00 0.00 2.10
9029 9762 5.044919 TCCAACATCCAATAGTCACCATTCT 60.045 40.000 0.00 0.00 0.00 2.40
9030 9763 5.192927 TCCAACATCCAATAGTCACCATTC 58.807 41.667 0.00 0.00 0.00 2.67
9031 9764 5.191727 TCCAACATCCAATAGTCACCATT 57.808 39.130 0.00 0.00 0.00 3.16
9032 9765 4.860802 TCCAACATCCAATAGTCACCAT 57.139 40.909 0.00 0.00 0.00 3.55
9033 9766 4.649267 TTCCAACATCCAATAGTCACCA 57.351 40.909 0.00 0.00 0.00 4.17
9034 9767 5.975693 TTTTCCAACATCCAATAGTCACC 57.024 39.130 0.00 0.00 0.00 4.02
9035 9768 5.807011 GCATTTTCCAACATCCAATAGTCAC 59.193 40.000 0.00 0.00 0.00 3.67
9036 9769 5.716228 AGCATTTTCCAACATCCAATAGTCA 59.284 36.000 0.00 0.00 0.00 3.41
9037 9770 6.212888 AGCATTTTCCAACATCCAATAGTC 57.787 37.500 0.00 0.00 0.00 2.59
9038 9771 7.781693 AGATAGCATTTTCCAACATCCAATAGT 59.218 33.333 0.00 0.00 0.00 2.12
9039 9772 8.174733 AGATAGCATTTTCCAACATCCAATAG 57.825 34.615 0.00 0.00 0.00 1.73
9040 9773 9.639563 TTAGATAGCATTTTCCAACATCCAATA 57.360 29.630 0.00 0.00 0.00 1.90
9041 9774 8.537728 TTAGATAGCATTTTCCAACATCCAAT 57.462 30.769 0.00 0.00 0.00 3.16
9042 9775 7.953005 TTAGATAGCATTTTCCAACATCCAA 57.047 32.000 0.00 0.00 0.00 3.53
9043 9776 7.615365 ACTTTAGATAGCATTTTCCAACATCCA 59.385 33.333 0.00 0.00 0.00 3.41
9044 9777 7.917505 CACTTTAGATAGCATTTTCCAACATCC 59.082 37.037 0.00 0.00 0.00 3.51
9045 9778 8.677300 TCACTTTAGATAGCATTTTCCAACATC 58.323 33.333 0.00 0.00 0.00 3.06
9046 9779 8.579850 TCACTTTAGATAGCATTTTCCAACAT 57.420 30.769 0.00 0.00 0.00 2.71
9047 9780 7.994425 TCACTTTAGATAGCATTTTCCAACA 57.006 32.000 0.00 0.00 0.00 3.33
9048 9781 8.677300 TCATCACTTTAGATAGCATTTTCCAAC 58.323 33.333 0.00 0.00 0.00 3.77
9049 9782 8.806429 TCATCACTTTAGATAGCATTTTCCAA 57.194 30.769 0.00 0.00 0.00 3.53
9050 9783 8.806429 TTCATCACTTTAGATAGCATTTTCCA 57.194 30.769 0.00 0.00 0.00 3.53
9051 9784 9.890352 GATTCATCACTTTAGATAGCATTTTCC 57.110 33.333 0.00 0.00 0.00 3.13
9069 9802 5.816777 TCTGATTTATGCGTGTGATTCATCA 59.183 36.000 0.00 0.00 0.00 3.07
9082 9815 6.417327 CGAGACAATTGACTCTGATTTATGC 58.583 40.000 27.34 6.23 35.28 3.14
9084 9817 6.644347 ACCGAGACAATTGACTCTGATTTAT 58.356 36.000 26.69 9.04 35.28 1.40
9105 9838 4.921515 TCGAAAGAATTGTACAGAGAACCG 59.078 41.667 0.00 0.00 37.03 4.44
9190 9925 9.234827 TCATCATCAAAACTACAAGATGAACAT 57.765 29.630 7.88 0.00 46.77 2.71
9195 9930 8.944029 AGAACTCATCATCAAAACTACAAGATG 58.056 33.333 0.00 0.00 39.29 2.90
9196 9931 8.944029 CAGAACTCATCATCAAAACTACAAGAT 58.056 33.333 0.00 0.00 0.00 2.40
9197 9932 7.933577 ACAGAACTCATCATCAAAACTACAAGA 59.066 33.333 0.00 0.00 0.00 3.02
9198 9933 8.013947 CACAGAACTCATCATCAAAACTACAAG 58.986 37.037 0.00 0.00 0.00 3.16
9199 9934 7.520453 GCACAGAACTCATCATCAAAACTACAA 60.520 37.037 0.00 0.00 0.00 2.41
9200 9935 6.073058 GCACAGAACTCATCATCAAAACTACA 60.073 38.462 0.00 0.00 0.00 2.74
9201 9936 6.148480 AGCACAGAACTCATCATCAAAACTAC 59.852 38.462 0.00 0.00 0.00 2.73
9202 9937 6.233434 AGCACAGAACTCATCATCAAAACTA 58.767 36.000 0.00 0.00 0.00 2.24
9203 9938 5.068636 AGCACAGAACTCATCATCAAAACT 58.931 37.500 0.00 0.00 0.00 2.66
9204 9939 5.368256 AGCACAGAACTCATCATCAAAAC 57.632 39.130 0.00 0.00 0.00 2.43
9207 9942 5.737860 ACATAGCACAGAACTCATCATCAA 58.262 37.500 0.00 0.00 0.00 2.57
9208 9943 5.349061 ACATAGCACAGAACTCATCATCA 57.651 39.130 0.00 0.00 0.00 3.07
9209 9944 7.871973 AGATAACATAGCACAGAACTCATCATC 59.128 37.037 0.00 0.00 0.00 2.92
9210 9945 7.656542 CAGATAACATAGCACAGAACTCATCAT 59.343 37.037 0.00 0.00 0.00 2.45
9211 9946 6.982724 CAGATAACATAGCACAGAACTCATCA 59.017 38.462 0.00 0.00 0.00 3.07
9213 9948 6.286758 CCAGATAACATAGCACAGAACTCAT 58.713 40.000 0.00 0.00 0.00 2.90
9215 9950 4.509600 GCCAGATAACATAGCACAGAACTC 59.490 45.833 0.00 0.00 0.00 3.01
9216 9951 4.163078 AGCCAGATAACATAGCACAGAACT 59.837 41.667 0.00 0.00 0.00 3.01
9220 9955 3.136763 CCAGCCAGATAACATAGCACAG 58.863 50.000 0.00 0.00 0.00 3.66
9222 9957 3.475566 TCCAGCCAGATAACATAGCAC 57.524 47.619 0.00 0.00 0.00 4.40
9223 9958 3.244665 CCATCCAGCCAGATAACATAGCA 60.245 47.826 0.00 0.00 0.00 3.49
9224 9959 3.244700 ACCATCCAGCCAGATAACATAGC 60.245 47.826 0.00 0.00 0.00 2.97
9225 9960 4.202398 ACACCATCCAGCCAGATAACATAG 60.202 45.833 0.00 0.00 0.00 2.23
9226 9961 3.716353 ACACCATCCAGCCAGATAACATA 59.284 43.478 0.00 0.00 0.00 2.29
9227 9962 2.511218 ACACCATCCAGCCAGATAACAT 59.489 45.455 0.00 0.00 0.00 2.71
9243 9978 1.351017 GAAGATGACCCTGGAACACCA 59.649 52.381 0.00 0.00 0.00 4.17
9255 9990 7.897575 AGAACAACTACAAGATGAAGATGAC 57.102 36.000 0.00 0.00 0.00 3.06
9269 10004 8.613482 AGTAAAAGCAGAGAAAAGAACAACTAC 58.387 33.333 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.