Multiple sequence alignment - TraesCS7D01G507100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G507100 chr7D 100.000 2609 0 0 1 2609 611469256 611466648 0.000000e+00 4819.0
1 TraesCS7D01G507100 chr7D 86.192 927 80 29 803 1694 611442542 611441629 0.000000e+00 959.0
2 TraesCS7D01G507100 chr7D 85.778 900 83 28 806 1687 611459455 611458583 0.000000e+00 911.0
3 TraesCS7D01G507100 chr7D 84.410 975 89 31 1690 2609 4649020 4649986 0.000000e+00 900.0
4 TraesCS7D01G507100 chr7D 84.556 900 79 32 790 1651 611445515 611444638 0.000000e+00 837.0
5 TraesCS7D01G507100 chr7D 85.643 801 75 26 1837 2609 403546048 403546836 0.000000e+00 806.0
6 TraesCS7D01G507100 chr7D 99.732 373 1 0 1 373 611481042 611480670 0.000000e+00 684.0
7 TraesCS7D01G507100 chr7D 98.118 372 6 1 3 373 548506122 548505751 0.000000e+00 647.0
8 TraesCS7D01G507100 chr7D 97.849 372 7 1 3 373 245771562 245771191 2.190000e-180 641.0
9 TraesCS7D01G507100 chr7D 91.962 423 25 8 1690 2106 534633432 534633013 3.740000e-163 584.0
10 TraesCS7D01G507100 chr7D 82.447 188 25 7 611 793 611442820 611442636 9.670000e-35 158.0
11 TraesCS7D01G507100 chr7A 92.588 850 34 6 840 1689 701459561 701458741 0.000000e+00 1194.0
12 TraesCS7D01G507100 chr7A 85.239 901 90 26 806 1687 701428626 701427750 0.000000e+00 887.0
13 TraesCS7D01G507100 chr7A 84.658 893 85 31 790 1651 701462980 701462109 0.000000e+00 843.0
14 TraesCS7D01G507100 chr7A 97.110 173 5 0 684 856 701459745 701459573 2.540000e-75 292.0
15 TraesCS7D01G507100 chr7B 84.907 1080 90 32 593 1616 700682754 700681692 0.000000e+00 1024.0
16 TraesCS7D01G507100 chr7B 85.510 911 87 25 806 1689 700724652 700723760 0.000000e+00 909.0
17 TraesCS7D01G507100 chr7B 85.998 857 74 24 791 1616 700736571 700735730 0.000000e+00 876.0
18 TraesCS7D01G507100 chr7B 84.983 859 85 24 1788 2609 736602190 736601339 0.000000e+00 832.0
19 TraesCS7D01G507100 chr7B 94.055 471 28 0 1218 1688 700685539 700685069 0.000000e+00 715.0
20 TraesCS7D01G507100 chr7B 84.637 716 73 22 990 1684 700630545 700629846 0.000000e+00 678.0
21 TraesCS7D01G507100 chr7B 85.022 681 81 11 1018 1689 700687461 700686793 0.000000e+00 673.0
22 TraesCS7D01G507100 chr7B 89.091 110 11 1 806 914 700630687 700630578 4.530000e-28 135.0
23 TraesCS7D01G507100 chr7B 76.382 199 26 11 431 625 700738944 700738763 1.290000e-13 87.9
24 TraesCS7D01G507100 chr7B 89.474 57 6 0 447 503 700690564 700690508 3.600000e-09 73.1
25 TraesCS7D01G507100 chr2D 86.071 962 74 20 1690 2609 632334523 632333580 0.000000e+00 979.0
26 TraesCS7D01G507100 chr2D 86.095 863 71 25 1787 2609 515072357 515071504 0.000000e+00 883.0
27 TraesCS7D01G507100 chr2D 83.623 806 72 24 1837 2609 498269761 498268983 0.000000e+00 702.0
28 TraesCS7D01G507100 chr2D 97.849 372 7 1 3 373 62448368 62447997 2.190000e-180 641.0
29 TraesCS7D01G507100 chr2D 91.121 428 24 11 1690 2106 293149327 293149751 3.770000e-158 568.0
30 TraesCS7D01G507100 chr1D 85.510 980 70 29 1683 2609 422691661 422692621 0.000000e+00 957.0
31 TraesCS7D01G507100 chr1D 97.849 372 7 1 3 373 72516261 72516632 2.190000e-180 641.0
32 TraesCS7D01G507100 chr1D 91.509 424 26 7 1689 2106 475863276 475862857 2.250000e-160 575.0
33 TraesCS7D01G507100 chr4D 87.074 851 74 22 1788 2609 483465299 483464456 0.000000e+00 929.0
34 TraesCS7D01G507100 chr4D 85.099 859 80 29 1788 2607 138703477 138702628 0.000000e+00 833.0
35 TraesCS7D01G507100 chr4D 81.257 923 108 31 793 1689 117706728 117705845 0.000000e+00 686.0
36 TraesCS7D01G507100 chr4D 87.586 145 10 2 642 786 117706913 117706777 7.470000e-36 161.0
37 TraesCS7D01G507100 chr3D 84.324 976 89 31 1690 2609 20396088 20397055 0.000000e+00 896.0
38 TraesCS7D01G507100 chr3D 84.855 865 86 32 1784 2609 601934200 601935058 0.000000e+00 830.0
39 TraesCS7D01G507100 chr3D 97.849 372 7 1 3 373 526121919 526121548 2.190000e-180 641.0
40 TraesCS7D01G507100 chr3D 97.849 372 7 1 3 373 526130684 526130313 2.190000e-180 641.0
41 TraesCS7D01G507100 chr3D 91.274 424 28 7 1691 2106 3602243 3602665 1.050000e-158 569.0
42 TraesCS7D01G507100 chr5D 86.391 823 67 23 1825 2609 192262794 192261979 0.000000e+00 857.0
43 TraesCS7D01G507100 chr5D 98.928 373 4 0 1 373 27288078 27288450 0.000000e+00 667.0
44 TraesCS7D01G507100 chr5D 98.660 373 5 0 1 373 27300454 27300826 0.000000e+00 662.0
45 TraesCS7D01G507100 chr3A 84.820 863 83 25 1787 2609 491195138 491195992 0.000000e+00 824.0
46 TraesCS7D01G507100 chr4A 81.128 922 104 32 790 1689 456293608 456294481 0.000000e+00 675.0
47 TraesCS7D01G507100 chr4B 80.543 920 111 33 796 1689 179842931 179842054 0.000000e+00 645.0
48 TraesCS7D01G507100 chr4B 83.600 250 23 7 541 788 179843225 179842992 4.370000e-53 219.0
49 TraesCS7D01G507100 chr2A 91.253 423 29 7 1690 2106 19986330 19985910 1.050000e-158 569.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G507100 chr7D 611466648 611469256 2608 True 4819.000000 4819 100.000000 1 2609 1 chr7D.!!$R5 2608
1 TraesCS7D01G507100 chr7D 611458583 611459455 872 True 911.000000 911 85.778000 806 1687 1 chr7D.!!$R4 881
2 TraesCS7D01G507100 chr7D 4649020 4649986 966 False 900.000000 900 84.410000 1690 2609 1 chr7D.!!$F1 919
3 TraesCS7D01G507100 chr7D 403546048 403546836 788 False 806.000000 806 85.643000 1837 2609 1 chr7D.!!$F2 772
4 TraesCS7D01G507100 chr7D 611441629 611445515 3886 True 651.333333 959 84.398333 611 1694 3 chr7D.!!$R7 1083
5 TraesCS7D01G507100 chr7A 701427750 701428626 876 True 887.000000 887 85.239000 806 1687 1 chr7A.!!$R1 881
6 TraesCS7D01G507100 chr7A 701458741 701462980 4239 True 776.333333 1194 91.452000 684 1689 3 chr7A.!!$R2 1005
7 TraesCS7D01G507100 chr7B 700723760 700724652 892 True 909.000000 909 85.510000 806 1689 1 chr7B.!!$R1 883
8 TraesCS7D01G507100 chr7B 736601339 736602190 851 True 832.000000 832 84.983000 1788 2609 1 chr7B.!!$R2 821
9 TraesCS7D01G507100 chr7B 700681692 700690564 8872 True 621.275000 1024 88.364500 447 1689 4 chr7B.!!$R4 1242
10 TraesCS7D01G507100 chr7B 700735730 700738944 3214 True 481.950000 876 81.190000 431 1616 2 chr7B.!!$R5 1185
11 TraesCS7D01G507100 chr7B 700629846 700630687 841 True 406.500000 678 86.864000 806 1684 2 chr7B.!!$R3 878
12 TraesCS7D01G507100 chr2D 632333580 632334523 943 True 979.000000 979 86.071000 1690 2609 1 chr2D.!!$R4 919
13 TraesCS7D01G507100 chr2D 515071504 515072357 853 True 883.000000 883 86.095000 1787 2609 1 chr2D.!!$R3 822
14 TraesCS7D01G507100 chr2D 498268983 498269761 778 True 702.000000 702 83.623000 1837 2609 1 chr2D.!!$R2 772
15 TraesCS7D01G507100 chr1D 422691661 422692621 960 False 957.000000 957 85.510000 1683 2609 1 chr1D.!!$F2 926
16 TraesCS7D01G507100 chr4D 483464456 483465299 843 True 929.000000 929 87.074000 1788 2609 1 chr4D.!!$R2 821
17 TraesCS7D01G507100 chr4D 138702628 138703477 849 True 833.000000 833 85.099000 1788 2607 1 chr4D.!!$R1 819
18 TraesCS7D01G507100 chr4D 117705845 117706913 1068 True 423.500000 686 84.421500 642 1689 2 chr4D.!!$R3 1047
19 TraesCS7D01G507100 chr3D 20396088 20397055 967 False 896.000000 896 84.324000 1690 2609 1 chr3D.!!$F2 919
20 TraesCS7D01G507100 chr3D 601934200 601935058 858 False 830.000000 830 84.855000 1784 2609 1 chr3D.!!$F3 825
21 TraesCS7D01G507100 chr5D 192261979 192262794 815 True 857.000000 857 86.391000 1825 2609 1 chr5D.!!$R1 784
22 TraesCS7D01G507100 chr3A 491195138 491195992 854 False 824.000000 824 84.820000 1787 2609 1 chr3A.!!$F1 822
23 TraesCS7D01G507100 chr4A 456293608 456294481 873 False 675.000000 675 81.128000 790 1689 1 chr4A.!!$F1 899
24 TraesCS7D01G507100 chr4B 179842054 179843225 1171 True 432.000000 645 82.071500 541 1689 2 chr4B.!!$R1 1148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.037326 TCAAGGACATCTGCCGTGAC 60.037 55.0 0.0 0.0 38.66 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 15967 0.771755 AGGGCTCGGGAAAAAGACTT 59.228 50.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.680903 TGTTATAGTAGACTTGTAGTGTAAGGC 58.319 37.037 0.00 0.00 33.25 4.35
33 34 8.680903 GTTATAGTAGACTTGTAGTGTAAGGCA 58.319 37.037 0.00 0.00 35.58 4.75
34 35 7.713734 ATAGTAGACTTGTAGTGTAAGGCAA 57.286 36.000 0.00 0.00 35.58 4.52
35 36 6.026947 AGTAGACTTGTAGTGTAAGGCAAG 57.973 41.667 0.00 0.00 42.65 4.01
55 56 4.857509 AGTATTGATTAGAGACCGAGCC 57.142 45.455 0.00 0.00 0.00 4.70
56 57 2.802787 ATTGATTAGAGACCGAGCCG 57.197 50.000 0.00 0.00 0.00 5.52
70 71 4.327885 GCCGGACGCTCTTATGAG 57.672 61.111 5.05 1.25 42.96 2.90
78 79 2.029666 CTCTTATGAGCCGGCCGG 59.970 66.667 40.26 40.26 33.12 6.13
79 80 3.521529 CTCTTATGAGCCGGCCGGG 62.522 68.421 43.31 25.74 39.58 5.73
80 81 3.546543 CTTATGAGCCGGCCGGGA 61.547 66.667 43.31 10.93 38.47 5.14
81 82 3.809374 CTTATGAGCCGGCCGGGAC 62.809 68.421 43.31 28.68 38.47 4.46
82 83 4.853142 TATGAGCCGGCCGGGACT 62.853 66.667 43.31 32.89 38.47 3.85
86 87 4.772231 AGCCGGCCGGGACTCTAA 62.772 66.667 43.31 0.00 38.47 2.10
87 88 4.222847 GCCGGCCGGGACTCTAAG 62.223 72.222 43.31 17.04 38.47 2.18
88 89 3.537874 CCGGCCGGGACTCTAAGG 61.538 72.222 37.42 6.27 38.47 2.69
89 90 3.537874 CGGCCGGGACTCTAAGGG 61.538 72.222 20.10 0.00 0.00 3.95
90 91 3.862991 GGCCGGGACTCTAAGGGC 61.863 72.222 2.18 0.00 43.01 5.19
91 92 2.764547 GCCGGGACTCTAAGGGCT 60.765 66.667 2.18 0.00 40.59 5.19
92 93 3.095347 GCCGGGACTCTAAGGGCTG 62.095 68.421 2.18 0.00 40.59 4.85
93 94 2.501610 CGGGACTCTAAGGGCTGC 59.498 66.667 0.00 0.00 0.00 5.25
94 95 2.060980 CGGGACTCTAAGGGCTGCT 61.061 63.158 0.00 0.00 0.00 4.24
95 96 1.524482 GGGACTCTAAGGGCTGCTG 59.476 63.158 0.00 0.00 0.00 4.41
96 97 1.524482 GGACTCTAAGGGCTGCTGG 59.476 63.158 0.00 0.00 0.00 4.85
97 98 1.524482 GACTCTAAGGGCTGCTGGG 59.476 63.158 0.00 0.00 0.00 4.45
98 99 2.191641 CTCTAAGGGCTGCTGGGC 59.808 66.667 0.00 0.00 40.05 5.36
99 100 3.746949 CTCTAAGGGCTGCTGGGCG 62.747 68.421 0.00 0.00 41.87 6.13
100 101 4.101448 CTAAGGGCTGCTGGGCGT 62.101 66.667 0.00 0.00 41.87 5.68
101 102 4.096003 TAAGGGCTGCTGGGCGTC 62.096 66.667 0.00 0.00 41.87 5.19
119 120 4.246458 GCGTCAGCCTCCTTATATAAAGG 58.754 47.826 8.37 8.37 36.71 3.11
120 121 4.822026 CGTCAGCCTCCTTATATAAAGGG 58.178 47.826 12.99 5.22 37.99 3.95
121 122 4.527038 CGTCAGCCTCCTTATATAAAGGGA 59.473 45.833 12.99 8.66 37.99 4.20
122 123 5.011738 CGTCAGCCTCCTTATATAAAGGGAA 59.988 44.000 12.99 0.00 37.99 3.97
123 124 6.468543 GTCAGCCTCCTTATATAAAGGGAAG 58.531 44.000 12.99 5.54 37.99 3.46
124 125 6.270231 GTCAGCCTCCTTATATAAAGGGAAGA 59.730 42.308 12.99 6.89 37.99 2.87
125 126 6.270231 TCAGCCTCCTTATATAAAGGGAAGAC 59.730 42.308 12.99 3.62 37.99 3.01
126 127 5.548446 AGCCTCCTTATATAAAGGGAAGACC 59.452 44.000 12.99 0.00 37.99 3.85
137 138 4.699522 GAAGACCCGGCAGCGGTT 62.700 66.667 0.00 0.00 32.27 4.44
138 139 4.699522 AAGACCCGGCAGCGGTTC 62.700 66.667 0.00 0.00 32.27 3.62
146 147 3.793144 GCAGCGGTTCAAGGCGAG 61.793 66.667 0.00 0.00 0.00 5.03
147 148 2.048222 CAGCGGTTCAAGGCGAGA 60.048 61.111 0.00 0.00 0.00 4.04
148 149 1.667830 CAGCGGTTCAAGGCGAGAA 60.668 57.895 0.00 0.00 0.00 2.87
149 150 1.668151 AGCGGTTCAAGGCGAGAAC 60.668 57.895 14.17 14.17 43.49 3.01
150 151 1.959226 GCGGTTCAAGGCGAGAACA 60.959 57.895 20.92 0.00 45.45 3.18
151 152 1.503818 GCGGTTCAAGGCGAGAACAA 61.504 55.000 20.92 0.00 45.45 2.83
152 153 1.156736 CGGTTCAAGGCGAGAACAAT 58.843 50.000 20.92 0.00 45.45 2.71
153 154 1.128692 CGGTTCAAGGCGAGAACAATC 59.871 52.381 20.92 8.00 45.45 2.67
154 155 2.427506 GGTTCAAGGCGAGAACAATCT 58.572 47.619 20.92 0.00 45.45 2.40
155 156 2.416893 GGTTCAAGGCGAGAACAATCTC 59.583 50.000 20.92 0.00 45.45 2.75
165 166 3.451141 AGAACAATCTCATCGAGAGCC 57.549 47.619 0.00 0.00 42.26 4.70
166 167 2.123342 GAACAATCTCATCGAGAGCCG 58.877 52.381 0.00 0.00 42.26 5.52
167 168 0.387202 ACAATCTCATCGAGAGCCGG 59.613 55.000 0.00 0.00 42.26 6.13
168 169 0.319383 CAATCTCATCGAGAGCCGGG 60.319 60.000 2.18 0.00 42.26 5.73
169 170 2.093537 AATCTCATCGAGAGCCGGGC 62.094 60.000 12.11 12.11 42.26 6.13
170 171 3.531207 CTCATCGAGAGCCGGGCA 61.531 66.667 23.09 0.00 37.59 5.36
171 172 2.839632 TCATCGAGAGCCGGGCAT 60.840 61.111 23.09 9.38 39.14 4.40
172 173 1.527433 CTCATCGAGAGCCGGGCATA 61.527 60.000 23.09 1.31 37.59 3.14
173 174 1.080230 CATCGAGAGCCGGGCATAG 60.080 63.158 23.09 9.81 39.14 2.23
174 175 2.936912 ATCGAGAGCCGGGCATAGC 61.937 63.158 23.09 7.43 39.14 2.97
175 176 3.610669 CGAGAGCCGGGCATAGCT 61.611 66.667 23.09 12.37 43.55 3.32
176 177 2.030262 GAGAGCCGGGCATAGCTG 59.970 66.667 23.09 0.00 40.11 4.24
177 178 2.765807 AGAGCCGGGCATAGCTGT 60.766 61.111 23.09 0.00 40.11 4.40
178 179 2.190578 GAGCCGGGCATAGCTGTT 59.809 61.111 23.09 0.00 40.11 3.16
179 180 1.452108 GAGCCGGGCATAGCTGTTT 60.452 57.895 23.09 0.00 40.11 2.83
180 181 0.179056 GAGCCGGGCATAGCTGTTTA 60.179 55.000 23.09 0.00 40.11 2.01
181 182 0.179045 AGCCGGGCATAGCTGTTTAG 60.179 55.000 23.09 0.00 38.11 1.85
190 191 3.911137 GCTGTTTAGCTCCCTGGC 58.089 61.111 0.00 0.00 46.57 4.85
191 192 2.109126 GCTGTTTAGCTCCCTGGCG 61.109 63.158 0.00 0.00 46.57 5.69
192 193 1.596934 CTGTTTAGCTCCCTGGCGA 59.403 57.895 0.00 0.00 37.29 5.54
193 194 0.179000 CTGTTTAGCTCCCTGGCGAT 59.821 55.000 0.00 0.00 37.29 4.58
194 195 0.178068 TGTTTAGCTCCCTGGCGATC 59.822 55.000 0.00 0.00 37.29 3.69
195 196 0.876342 GTTTAGCTCCCTGGCGATCG 60.876 60.000 11.69 11.69 37.29 3.69
196 197 1.327690 TTTAGCTCCCTGGCGATCGT 61.328 55.000 17.81 0.00 37.29 3.73
197 198 0.466739 TTAGCTCCCTGGCGATCGTA 60.467 55.000 17.81 5.51 37.29 3.43
198 199 0.466739 TAGCTCCCTGGCGATCGTAA 60.467 55.000 17.81 4.30 37.29 3.18
199 200 1.591863 GCTCCCTGGCGATCGTAAC 60.592 63.158 17.81 8.24 0.00 2.50
200 201 1.067582 CTCCCTGGCGATCGTAACC 59.932 63.158 17.81 10.13 0.00 2.85
201 202 2.108362 CCCTGGCGATCGTAACCC 59.892 66.667 17.81 9.75 0.00 4.11
202 203 2.432300 CCCTGGCGATCGTAACCCT 61.432 63.158 17.81 0.00 0.00 4.34
203 204 1.111116 CCCTGGCGATCGTAACCCTA 61.111 60.000 17.81 0.00 0.00 3.53
204 205 0.748450 CCTGGCGATCGTAACCCTAA 59.252 55.000 17.81 0.00 0.00 2.69
205 206 1.343465 CCTGGCGATCGTAACCCTAAT 59.657 52.381 17.81 0.00 0.00 1.73
206 207 2.609737 CCTGGCGATCGTAACCCTAATC 60.610 54.545 17.81 0.00 0.00 1.75
207 208 2.033372 TGGCGATCGTAACCCTAATCA 58.967 47.619 17.81 0.00 0.00 2.57
208 209 2.431419 TGGCGATCGTAACCCTAATCAA 59.569 45.455 17.81 0.00 0.00 2.57
209 210 3.070446 TGGCGATCGTAACCCTAATCAAT 59.930 43.478 17.81 0.00 0.00 2.57
210 211 4.281435 TGGCGATCGTAACCCTAATCAATA 59.719 41.667 17.81 0.00 0.00 1.90
211 212 5.221481 TGGCGATCGTAACCCTAATCAATAA 60.221 40.000 17.81 0.00 0.00 1.40
212 213 5.119743 GGCGATCGTAACCCTAATCAATAAC 59.880 44.000 17.81 0.00 0.00 1.89
213 214 5.693104 GCGATCGTAACCCTAATCAATAACA 59.307 40.000 17.81 0.00 0.00 2.41
214 215 6.346359 GCGATCGTAACCCTAATCAATAACAC 60.346 42.308 17.81 0.00 0.00 3.32
215 216 6.145048 CGATCGTAACCCTAATCAATAACACC 59.855 42.308 7.03 0.00 0.00 4.16
216 217 6.549433 TCGTAACCCTAATCAATAACACCT 57.451 37.500 0.00 0.00 0.00 4.00
217 218 6.576185 TCGTAACCCTAATCAATAACACCTC 58.424 40.000 0.00 0.00 0.00 3.85
218 219 5.461078 CGTAACCCTAATCAATAACACCTCG 59.539 44.000 0.00 0.00 0.00 4.63
219 220 5.687166 AACCCTAATCAATAACACCTCGA 57.313 39.130 0.00 0.00 0.00 4.04
220 221 5.687166 ACCCTAATCAATAACACCTCGAA 57.313 39.130 0.00 0.00 0.00 3.71
221 222 5.425630 ACCCTAATCAATAACACCTCGAAC 58.574 41.667 0.00 0.00 0.00 3.95
222 223 5.189145 ACCCTAATCAATAACACCTCGAACT 59.811 40.000 0.00 0.00 0.00 3.01
223 224 5.523916 CCCTAATCAATAACACCTCGAACTG 59.476 44.000 0.00 0.00 0.00 3.16
224 225 5.523916 CCTAATCAATAACACCTCGAACTGG 59.476 44.000 0.00 0.00 0.00 4.00
225 226 4.819105 ATCAATAACACCTCGAACTGGA 57.181 40.909 0.00 0.00 0.00 3.86
226 227 3.921677 TCAATAACACCTCGAACTGGAC 58.078 45.455 0.00 0.00 0.00 4.02
227 228 2.649331 ATAACACCTCGAACTGGACG 57.351 50.000 0.00 0.00 0.00 4.79
228 229 1.321474 TAACACCTCGAACTGGACGT 58.679 50.000 0.00 0.00 0.00 4.34
229 230 1.321474 AACACCTCGAACTGGACGTA 58.679 50.000 0.00 0.00 0.00 3.57
230 231 0.879765 ACACCTCGAACTGGACGTAG 59.120 55.000 0.00 0.00 0.00 3.51
231 232 0.170561 CACCTCGAACTGGACGTAGG 59.829 60.000 0.00 0.00 35.70 3.18
232 233 1.139095 CCTCGAACTGGACGTAGGC 59.861 63.158 0.00 0.00 0.00 3.93
233 234 1.313812 CCTCGAACTGGACGTAGGCT 61.314 60.000 0.00 0.00 0.00 4.58
234 235 0.526662 CTCGAACTGGACGTAGGCTT 59.473 55.000 0.00 0.00 0.00 4.35
235 236 0.963962 TCGAACTGGACGTAGGCTTT 59.036 50.000 0.00 0.00 0.00 3.51
236 237 1.342174 TCGAACTGGACGTAGGCTTTT 59.658 47.619 0.00 0.00 0.00 2.27
237 238 2.557924 TCGAACTGGACGTAGGCTTTTA 59.442 45.455 0.00 0.00 0.00 1.52
238 239 2.665052 CGAACTGGACGTAGGCTTTTAC 59.335 50.000 0.00 0.00 0.00 2.01
239 240 2.756840 ACTGGACGTAGGCTTTTACC 57.243 50.000 0.00 0.00 0.00 2.85
240 241 2.254508 ACTGGACGTAGGCTTTTACCT 58.745 47.619 0.00 0.00 44.31 3.08
241 242 2.636403 ACTGGACGTAGGCTTTTACCTT 59.364 45.455 0.00 0.00 41.50 3.50
242 243 3.259902 CTGGACGTAGGCTTTTACCTTC 58.740 50.000 0.00 0.00 41.50 3.46
243 244 2.633967 TGGACGTAGGCTTTTACCTTCA 59.366 45.455 0.00 0.00 41.50 3.02
244 245 2.998670 GGACGTAGGCTTTTACCTTCAC 59.001 50.000 0.00 0.00 41.50 3.18
245 246 2.998670 GACGTAGGCTTTTACCTTCACC 59.001 50.000 0.00 0.00 41.50 4.02
246 247 1.997606 CGTAGGCTTTTACCTTCACCG 59.002 52.381 0.00 0.00 41.50 4.94
247 248 2.611224 CGTAGGCTTTTACCTTCACCGT 60.611 50.000 0.00 0.00 41.50 4.83
248 249 3.367292 CGTAGGCTTTTACCTTCACCGTA 60.367 47.826 0.00 0.00 41.50 4.02
249 250 3.775261 AGGCTTTTACCTTCACCGTAA 57.225 42.857 0.00 0.00 36.28 3.18
250 251 3.671716 AGGCTTTTACCTTCACCGTAAG 58.328 45.455 0.00 0.00 36.28 2.34
262 263 2.125269 CGTAAGGGGCCGAACCAG 60.125 66.667 0.00 0.00 42.05 4.00
263 264 2.951101 CGTAAGGGGCCGAACCAGT 61.951 63.158 0.00 0.00 42.05 4.00
264 265 1.606885 CGTAAGGGGCCGAACCAGTA 61.607 60.000 0.00 0.00 42.05 2.74
265 266 0.835276 GTAAGGGGCCGAACCAGTAT 59.165 55.000 0.00 0.00 42.05 2.12
266 267 2.041701 GTAAGGGGCCGAACCAGTATA 58.958 52.381 0.00 0.00 42.05 1.47
267 268 1.587066 AAGGGGCCGAACCAGTATAA 58.413 50.000 0.00 0.00 42.05 0.98
268 269 1.587066 AGGGGCCGAACCAGTATAAA 58.413 50.000 0.00 0.00 42.05 1.40
269 270 1.211212 AGGGGCCGAACCAGTATAAAC 59.789 52.381 0.00 0.00 42.05 2.01
270 271 1.671979 GGGCCGAACCAGTATAAACC 58.328 55.000 0.00 0.00 42.05 3.27
271 272 1.671979 GGCCGAACCAGTATAAACCC 58.328 55.000 0.00 0.00 38.86 4.11
272 273 1.211212 GGCCGAACCAGTATAAACCCT 59.789 52.381 0.00 0.00 38.86 4.34
273 274 2.558378 GCCGAACCAGTATAAACCCTC 58.442 52.381 0.00 0.00 0.00 4.30
274 275 2.817901 CCGAACCAGTATAAACCCTCG 58.182 52.381 0.00 0.00 0.00 4.63
275 276 2.167075 CCGAACCAGTATAAACCCTCGT 59.833 50.000 0.00 0.00 0.00 4.18
276 277 3.184541 CGAACCAGTATAAACCCTCGTG 58.815 50.000 0.00 0.00 0.00 4.35
277 278 3.367703 CGAACCAGTATAAACCCTCGTGT 60.368 47.826 0.00 0.00 0.00 4.49
278 279 4.572909 GAACCAGTATAAACCCTCGTGTT 58.427 43.478 0.00 0.00 0.00 3.32
279 280 4.628963 ACCAGTATAAACCCTCGTGTTT 57.371 40.909 5.94 5.94 41.18 2.83
280 281 4.572909 ACCAGTATAAACCCTCGTGTTTC 58.427 43.478 4.28 0.00 39.15 2.78
281 282 4.285260 ACCAGTATAAACCCTCGTGTTTCT 59.715 41.667 4.28 0.00 39.15 2.52
282 283 5.221783 ACCAGTATAAACCCTCGTGTTTCTT 60.222 40.000 4.28 0.00 39.15 2.52
283 284 5.121768 CCAGTATAAACCCTCGTGTTTCTTG 59.878 44.000 4.28 1.52 39.15 3.02
284 285 5.699458 CAGTATAAACCCTCGTGTTTCTTGT 59.301 40.000 4.28 0.00 39.15 3.16
285 286 5.930569 AGTATAAACCCTCGTGTTTCTTGTC 59.069 40.000 4.28 0.00 39.15 3.18
286 287 1.963172 AACCCTCGTGTTTCTTGTCC 58.037 50.000 0.00 0.00 0.00 4.02
287 288 0.108019 ACCCTCGTGTTTCTTGTCCC 59.892 55.000 0.00 0.00 0.00 4.46
288 289 0.949105 CCCTCGTGTTTCTTGTCCCG 60.949 60.000 0.00 0.00 0.00 5.14
289 290 0.249741 CCTCGTGTTTCTTGTCCCGT 60.250 55.000 0.00 0.00 0.00 5.28
290 291 1.000060 CCTCGTGTTTCTTGTCCCGTA 60.000 52.381 0.00 0.00 0.00 4.02
291 292 2.353406 CCTCGTGTTTCTTGTCCCGTAT 60.353 50.000 0.00 0.00 0.00 3.06
292 293 3.119388 CCTCGTGTTTCTTGTCCCGTATA 60.119 47.826 0.00 0.00 0.00 1.47
293 294 4.487948 CTCGTGTTTCTTGTCCCGTATAA 58.512 43.478 0.00 0.00 0.00 0.98
294 295 4.236935 TCGTGTTTCTTGTCCCGTATAAC 58.763 43.478 0.00 0.00 0.00 1.89
295 296 3.368843 CGTGTTTCTTGTCCCGTATAACC 59.631 47.826 0.00 0.00 0.00 2.85
296 297 3.686241 GTGTTTCTTGTCCCGTATAACCC 59.314 47.826 0.00 0.00 0.00 4.11
297 298 3.273434 GTTTCTTGTCCCGTATAACCCC 58.727 50.000 0.00 0.00 0.00 4.95
298 299 2.555732 TCTTGTCCCGTATAACCCCT 57.444 50.000 0.00 0.00 0.00 4.79
299 300 2.836667 TCTTGTCCCGTATAACCCCTT 58.163 47.619 0.00 0.00 0.00 3.95
300 301 2.767960 TCTTGTCCCGTATAACCCCTTC 59.232 50.000 0.00 0.00 0.00 3.46
301 302 2.250921 TGTCCCGTATAACCCCTTCA 57.749 50.000 0.00 0.00 0.00 3.02
302 303 2.549082 TGTCCCGTATAACCCCTTCAA 58.451 47.619 0.00 0.00 0.00 2.69
303 304 2.502538 TGTCCCGTATAACCCCTTCAAG 59.497 50.000 0.00 0.00 0.00 3.02
304 305 1.487558 TCCCGTATAACCCCTTCAAGC 59.512 52.381 0.00 0.00 0.00 4.01
305 306 1.489230 CCCGTATAACCCCTTCAAGCT 59.511 52.381 0.00 0.00 0.00 3.74
306 307 2.092592 CCCGTATAACCCCTTCAAGCTT 60.093 50.000 0.00 0.00 0.00 3.74
307 308 3.203716 CCGTATAACCCCTTCAAGCTTC 58.796 50.000 0.00 0.00 0.00 3.86
308 309 3.203716 CGTATAACCCCTTCAAGCTTCC 58.796 50.000 0.00 0.00 0.00 3.46
309 310 3.118371 CGTATAACCCCTTCAAGCTTCCT 60.118 47.826 0.00 0.00 0.00 3.36
310 311 4.100498 CGTATAACCCCTTCAAGCTTCCTA 59.900 45.833 0.00 0.00 0.00 2.94
311 312 4.779993 ATAACCCCTTCAAGCTTCCTAG 57.220 45.455 0.00 0.00 0.00 3.02
312 313 2.046280 ACCCCTTCAAGCTTCCTAGT 57.954 50.000 0.00 0.00 0.00 2.57
313 314 2.349445 ACCCCTTCAAGCTTCCTAGTT 58.651 47.619 0.00 0.00 0.00 2.24
314 315 2.040412 ACCCCTTCAAGCTTCCTAGTTG 59.960 50.000 0.00 0.00 0.00 3.16
315 316 2.087646 CCCTTCAAGCTTCCTAGTTGC 58.912 52.381 0.00 0.00 0.00 4.17
316 317 1.734465 CCTTCAAGCTTCCTAGTTGCG 59.266 52.381 0.00 0.00 0.00 4.85
317 318 2.612972 CCTTCAAGCTTCCTAGTTGCGA 60.613 50.000 0.00 0.00 0.00 5.10
318 319 3.265791 CTTCAAGCTTCCTAGTTGCGAT 58.734 45.455 0.00 0.00 0.00 4.58
319 320 2.621338 TCAAGCTTCCTAGTTGCGATG 58.379 47.619 0.00 0.00 0.00 3.84
320 321 1.667724 CAAGCTTCCTAGTTGCGATGG 59.332 52.381 0.00 0.00 0.00 3.51
321 322 0.462759 AGCTTCCTAGTTGCGATGGC 60.463 55.000 0.00 0.00 40.52 4.40
322 323 0.462759 GCTTCCTAGTTGCGATGGCT 60.463 55.000 0.15 0.00 40.82 4.75
323 324 1.576356 CTTCCTAGTTGCGATGGCTC 58.424 55.000 0.15 0.00 40.82 4.70
324 325 0.178068 TTCCTAGTTGCGATGGCTCC 59.822 55.000 0.15 0.00 40.82 4.70
325 326 0.975556 TCCTAGTTGCGATGGCTCCA 60.976 55.000 0.15 0.00 40.82 3.86
326 327 0.811616 CCTAGTTGCGATGGCTCCAC 60.812 60.000 0.15 0.00 40.82 4.02
327 328 1.148157 CTAGTTGCGATGGCTCCACG 61.148 60.000 0.15 0.00 40.82 4.94
328 329 1.600511 TAGTTGCGATGGCTCCACGA 61.601 55.000 0.15 0.00 40.82 4.35
329 330 2.434185 TTGCGATGGCTCCACGAC 60.434 61.111 0.15 6.68 40.82 4.34
330 331 2.942796 TTGCGATGGCTCCACGACT 61.943 57.895 0.15 0.00 40.82 4.18
331 332 1.600511 TTGCGATGGCTCCACGACTA 61.601 55.000 0.15 2.46 40.82 2.59
332 333 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
333 334 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
334 335 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
335 336 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
336 337 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
337 338 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
338 339 1.005097 TGGCTCCACGACTAAGTCCTA 59.995 52.381 0.00 0.00 0.00 2.94
339 340 1.677052 GGCTCCACGACTAAGTCCTAG 59.323 57.143 0.00 0.00 0.00 3.02
340 341 1.065851 GCTCCACGACTAAGTCCTAGC 59.934 57.143 0.00 0.00 0.00 3.42
341 342 2.645802 CTCCACGACTAAGTCCTAGCT 58.354 52.381 0.00 0.00 0.00 3.32
342 343 2.614983 CTCCACGACTAAGTCCTAGCTC 59.385 54.545 0.00 0.00 0.00 4.09
343 344 2.026542 TCCACGACTAAGTCCTAGCTCA 60.027 50.000 0.00 0.00 0.00 4.26
344 345 2.753452 CCACGACTAAGTCCTAGCTCAA 59.247 50.000 0.00 0.00 0.00 3.02
345 346 3.181495 CCACGACTAAGTCCTAGCTCAAG 60.181 52.174 0.00 0.00 0.00 3.02
346 347 3.018149 ACGACTAAGTCCTAGCTCAAGG 58.982 50.000 0.00 0.00 38.06 3.61
347 348 3.280295 CGACTAAGTCCTAGCTCAAGGA 58.720 50.000 0.72 0.72 43.58 3.36
354 355 1.759445 TCCTAGCTCAAGGACATCTGC 59.241 52.381 0.72 0.00 40.86 4.26
355 356 1.202627 CCTAGCTCAAGGACATCTGCC 60.203 57.143 0.00 0.00 39.15 4.85
356 357 0.461548 TAGCTCAAGGACATCTGCCG 59.538 55.000 0.00 0.00 0.00 5.69
357 358 1.078848 GCTCAAGGACATCTGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
358 359 1.364626 GCTCAAGGACATCTGCCGTG 61.365 60.000 0.00 0.00 36.42 4.94
359 360 0.247460 CTCAAGGACATCTGCCGTGA 59.753 55.000 0.00 0.00 40.73 4.35
360 361 0.037326 TCAAGGACATCTGCCGTGAC 60.037 55.000 0.00 0.00 38.66 3.67
361 362 0.320683 CAAGGACATCTGCCGTGACA 60.321 55.000 0.00 0.00 37.10 3.58
362 363 0.396435 AAGGACATCTGCCGTGACAA 59.604 50.000 0.00 0.00 0.00 3.18
363 364 0.615331 AGGACATCTGCCGTGACAAT 59.385 50.000 0.00 0.00 0.00 2.71
364 365 1.003580 AGGACATCTGCCGTGACAATT 59.996 47.619 0.00 0.00 0.00 2.32
365 366 1.398390 GGACATCTGCCGTGACAATTC 59.602 52.381 0.00 0.00 0.00 2.17
366 367 1.398390 GACATCTGCCGTGACAATTCC 59.602 52.381 0.00 0.00 0.00 3.01
367 368 1.271325 ACATCTGCCGTGACAATTCCA 60.271 47.619 0.00 0.00 0.00 3.53
368 369 1.131126 CATCTGCCGTGACAATTCCAC 59.869 52.381 0.00 0.00 0.00 4.02
375 376 2.681152 GTGACAATTCCACGACAACC 57.319 50.000 0.00 0.00 0.00 3.77
376 377 2.218603 GTGACAATTCCACGACAACCT 58.781 47.619 0.00 0.00 0.00 3.50
377 378 2.616842 GTGACAATTCCACGACAACCTT 59.383 45.455 0.00 0.00 0.00 3.50
378 379 2.616376 TGACAATTCCACGACAACCTTG 59.384 45.455 0.00 0.00 0.00 3.61
379 380 2.616842 GACAATTCCACGACAACCTTGT 59.383 45.455 0.00 0.00 45.65 3.16
395 396 8.062065 ACAACCTTGTCTTTTCATAACAAAGA 57.938 30.769 0.00 0.00 36.50 2.52
396 397 8.527810 ACAACCTTGTCTTTTCATAACAAAGAA 58.472 29.630 0.00 0.00 40.99 2.52
397 398 9.364989 CAACCTTGTCTTTTCATAACAAAGAAA 57.635 29.630 0.00 0.00 40.99 2.52
398 399 9.586435 AACCTTGTCTTTTCATAACAAAGAAAG 57.414 29.630 0.00 4.42 40.99 2.62
399 400 8.966868 ACCTTGTCTTTTCATAACAAAGAAAGA 58.033 29.630 13.26 0.00 40.99 2.52
400 401 9.237846 CCTTGTCTTTTCATAACAAAGAAAGAC 57.762 33.333 16.25 16.25 40.99 3.01
401 402 9.787532 CTTGTCTTTTCATAACAAAGAAAGACA 57.212 29.630 19.94 19.94 40.99 3.41
402 403 9.787532 TTGTCTTTTCATAACAAAGAAAGACAG 57.212 29.630 21.64 4.00 40.99 3.51
403 404 9.173021 TGTCTTTTCATAACAAAGAAAGACAGA 57.827 29.630 19.94 5.09 40.99 3.41
404 405 9.657121 GTCTTTTCATAACAAAGAAAGACAGAG 57.343 33.333 17.53 0.41 40.99 3.35
405 406 9.613428 TCTTTTCATAACAAAGAAAGACAGAGA 57.387 29.630 0.00 0.00 37.33 3.10
406 407 9.875675 CTTTTCATAACAAAGAAAGACAGAGAG 57.124 33.333 0.00 0.00 35.41 3.20
407 408 9.613428 TTTTCATAACAAAGAAAGACAGAGAGA 57.387 29.630 0.00 0.00 35.41 3.10
408 409 8.824159 TTCATAACAAAGAAAGACAGAGAGAG 57.176 34.615 0.00 0.00 0.00 3.20
409 410 8.183104 TCATAACAAAGAAAGACAGAGAGAGA 57.817 34.615 0.00 0.00 0.00 3.10
410 411 8.303156 TCATAACAAAGAAAGACAGAGAGAGAG 58.697 37.037 0.00 0.00 0.00 3.20
411 412 6.723298 AACAAAGAAAGACAGAGAGAGAGA 57.277 37.500 0.00 0.00 0.00 3.10
412 413 6.723298 ACAAAGAAAGACAGAGAGAGAGAA 57.277 37.500 0.00 0.00 0.00 2.87
413 414 7.118496 ACAAAGAAAGACAGAGAGAGAGAAA 57.882 36.000 0.00 0.00 0.00 2.52
414 415 6.983890 ACAAAGAAAGACAGAGAGAGAGAAAC 59.016 38.462 0.00 0.00 0.00 2.78
415 416 6.723298 AAGAAAGACAGAGAGAGAGAAACA 57.277 37.500 0.00 0.00 0.00 2.83
416 417 6.723298 AGAAAGACAGAGAGAGAGAAACAA 57.277 37.500 0.00 0.00 0.00 2.83
417 418 7.118496 AGAAAGACAGAGAGAGAGAAACAAA 57.882 36.000 0.00 0.00 0.00 2.83
418 419 7.209475 AGAAAGACAGAGAGAGAGAAACAAAG 58.791 38.462 0.00 0.00 0.00 2.77
419 420 4.881920 AGACAGAGAGAGAGAAACAAAGC 58.118 43.478 0.00 0.00 0.00 3.51
420 421 3.648009 ACAGAGAGAGAGAAACAAAGCG 58.352 45.455 0.00 0.00 0.00 4.68
421 422 2.992543 CAGAGAGAGAGAAACAAAGCGG 59.007 50.000 0.00 0.00 0.00 5.52
422 423 2.028567 AGAGAGAGAGAAACAAAGCGGG 60.029 50.000 0.00 0.00 0.00 6.13
423 424 1.694696 AGAGAGAGAAACAAAGCGGGT 59.305 47.619 0.00 0.00 0.00 5.28
424 425 2.104963 AGAGAGAGAAACAAAGCGGGTT 59.895 45.455 0.00 0.00 0.00 4.11
425 426 2.879026 GAGAGAGAAACAAAGCGGGTTT 59.121 45.455 0.00 0.00 40.91 3.27
432 433 4.246053 AAAGCGGGTTTGAACGGT 57.754 50.000 4.10 0.00 43.21 4.83
433 434 4.246053 AAGCGGGTTTGAACGGTT 57.754 50.000 0.00 0.00 44.68 4.44
434 435 2.495809 AAGCGGGTTTGAACGGTTT 58.504 47.368 0.00 0.00 46.97 3.27
435 436 0.101579 AAGCGGGTTTGAACGGTTTG 59.898 50.000 0.00 0.00 46.97 2.93
436 437 0.748729 AGCGGGTTTGAACGGTTTGA 60.749 50.000 0.00 0.00 37.57 2.69
437 438 0.317519 GCGGGTTTGAACGGTTTGAG 60.318 55.000 0.00 0.00 0.00 3.02
438 439 1.301423 CGGGTTTGAACGGTTTGAGA 58.699 50.000 0.00 0.00 0.00 3.27
439 440 1.671845 CGGGTTTGAACGGTTTGAGAA 59.328 47.619 0.00 0.00 0.00 2.87
440 441 2.286772 CGGGTTTGAACGGTTTGAGAAG 60.287 50.000 0.00 0.00 0.00 2.85
441 442 2.543031 GGGTTTGAACGGTTTGAGAAGC 60.543 50.000 0.00 0.00 0.00 3.86
442 443 2.357952 GGTTTGAACGGTTTGAGAAGCT 59.642 45.455 0.00 0.00 0.00 3.74
443 444 3.363178 GTTTGAACGGTTTGAGAAGCTG 58.637 45.455 0.00 0.00 0.00 4.24
444 445 0.944386 TGAACGGTTTGAGAAGCTGC 59.056 50.000 0.00 0.00 0.00 5.25
445 446 0.944386 GAACGGTTTGAGAAGCTGCA 59.056 50.000 1.02 0.00 0.00 4.41
446 447 1.537202 GAACGGTTTGAGAAGCTGCAT 59.463 47.619 1.02 0.00 0.00 3.96
447 448 1.160137 ACGGTTTGAGAAGCTGCATC 58.840 50.000 1.02 0.00 0.00 3.91
448 449 0.095935 CGGTTTGAGAAGCTGCATCG 59.904 55.000 1.02 0.00 0.00 3.84
449 450 1.442769 GGTTTGAGAAGCTGCATCGA 58.557 50.000 1.02 0.00 0.00 3.59
450 451 1.806542 GGTTTGAGAAGCTGCATCGAA 59.193 47.619 1.02 0.31 0.00 3.71
451 452 2.413371 GGTTTGAGAAGCTGCATCGAAC 60.413 50.000 17.46 17.46 36.85 3.95
462 463 3.670991 GCTGCATCGAACTGTATAGTAGC 59.329 47.826 0.00 0.00 35.69 3.58
466 467 5.009610 TGCATCGAACTGTATAGTAGCATGA 59.990 40.000 0.00 0.00 35.69 3.07
497 498 3.099002 TGCGCCTATGCATGACATT 57.901 47.368 10.16 0.00 40.62 2.71
498 499 0.946528 TGCGCCTATGCATGACATTC 59.053 50.000 10.16 0.00 40.62 2.67
503 504 3.418995 GCCTATGCATGACATTCCATCT 58.581 45.455 10.16 0.00 40.38 2.90
504 505 4.582869 GCCTATGCATGACATTCCATCTA 58.417 43.478 10.16 0.00 40.38 1.98
505 506 5.005740 GCCTATGCATGACATTCCATCTAA 58.994 41.667 10.16 0.00 40.38 2.10
507 508 6.825213 GCCTATGCATGACATTCCATCTAATA 59.175 38.462 10.16 0.00 40.38 0.98
508 509 7.337689 GCCTATGCATGACATTCCATCTAATAA 59.662 37.037 10.16 0.00 40.38 1.40
509 510 8.890718 CCTATGCATGACATTCCATCTAATAAG 58.109 37.037 10.16 0.00 40.38 1.73
511 512 6.063404 TGCATGACATTCCATCTAATAAGCA 58.937 36.000 0.00 0.00 0.00 3.91
512 513 6.016860 TGCATGACATTCCATCTAATAAGCAC 60.017 38.462 0.00 0.00 0.00 4.40
513 514 6.206243 GCATGACATTCCATCTAATAAGCACT 59.794 38.462 0.00 0.00 0.00 4.40
516 517 7.212976 TGACATTCCATCTAATAAGCACTCTC 58.787 38.462 0.00 0.00 0.00 3.20
517 518 7.070447 TGACATTCCATCTAATAAGCACTCTCT 59.930 37.037 0.00 0.00 0.00 3.10
518 519 7.441017 ACATTCCATCTAATAAGCACTCTCTC 58.559 38.462 0.00 0.00 0.00 3.20
520 521 4.520874 TCCATCTAATAAGCACTCTCTCCG 59.479 45.833 0.00 0.00 0.00 4.63
521 522 4.321601 CCATCTAATAAGCACTCTCTCCGG 60.322 50.000 0.00 0.00 0.00 5.14
522 523 4.166246 TCTAATAAGCACTCTCTCCGGA 57.834 45.455 2.93 2.93 0.00 5.14
523 524 4.533815 TCTAATAAGCACTCTCTCCGGAA 58.466 43.478 5.23 0.00 0.00 4.30
524 525 4.954202 TCTAATAAGCACTCTCTCCGGAAA 59.046 41.667 5.23 0.00 0.00 3.13
525 526 3.810310 ATAAGCACTCTCTCCGGAAAG 57.190 47.619 5.23 0.33 0.00 2.62
526 527 1.633774 AAGCACTCTCTCCGGAAAGA 58.366 50.000 7.41 7.41 0.00 2.52
527 528 1.633774 AGCACTCTCTCCGGAAAGAA 58.366 50.000 9.21 0.00 0.00 2.52
528 529 1.971357 AGCACTCTCTCCGGAAAGAAA 59.029 47.619 9.21 0.00 0.00 2.52
529 530 2.569404 AGCACTCTCTCCGGAAAGAAAT 59.431 45.455 9.21 0.00 0.00 2.17
530 531 3.769844 AGCACTCTCTCCGGAAAGAAATA 59.230 43.478 9.21 0.00 0.00 1.40
531 532 4.407296 AGCACTCTCTCCGGAAAGAAATAT 59.593 41.667 9.21 0.00 0.00 1.28
532 533 5.598830 AGCACTCTCTCCGGAAAGAAATATA 59.401 40.000 9.21 0.00 0.00 0.86
533 534 6.098409 AGCACTCTCTCCGGAAAGAAATATAA 59.902 38.462 9.21 0.00 0.00 0.98
534 535 6.761714 GCACTCTCTCCGGAAAGAAATATAAA 59.238 38.462 9.21 0.00 0.00 1.40
538 539 6.479001 TCTCTCCGGAAAGAAATATAAAAGCG 59.521 38.462 4.59 0.00 0.00 4.68
539 540 6.110707 TCTCCGGAAAGAAATATAAAAGCGT 58.889 36.000 5.23 0.00 0.00 5.07
574 575 4.940046 TGAGGCAGTTGAGAATCTGATTTC 59.060 41.667 4.11 5.25 34.92 2.17
585 586 9.790344 TTGAGAATCTGATTTCTTTTCTCTCTT 57.210 29.630 14.20 0.00 41.69 2.85
609 1642 8.532186 TTCCCAGCTAATTAATCAATTAAGCA 57.468 30.769 7.36 0.00 36.43 3.91
626 1659 9.547753 CAATTAAGCACTAGATAACTACACCAT 57.452 33.333 0.00 0.00 0.00 3.55
651 1723 2.045536 TGCCATGCCGTGCACATA 60.046 55.556 18.64 2.08 43.04 2.29
652 1724 1.655885 CTGCCATGCCGTGCACATAA 61.656 55.000 18.64 0.71 43.04 1.90
685 3755 0.459585 GGCGTCCTCGATTGCTGTTA 60.460 55.000 0.00 0.00 39.71 2.41
779 11179 2.254546 TATCCATCAATCCACGTGCC 57.745 50.000 10.91 0.00 0.00 5.01
802 11255 4.612712 CGTCATTAACATTTCGTGGTGCTT 60.613 41.667 0.00 0.00 0.00 3.91
803 11256 5.390040 CGTCATTAACATTTCGTGGTGCTTA 60.390 40.000 0.00 0.00 0.00 3.09
840 11355 1.453155 GAATTGAGGTCCACGCATGT 58.547 50.000 0.00 0.00 0.00 3.21
854 11371 5.128663 TCCACGCATGTGCCATATATACTAT 59.871 40.000 6.08 0.00 45.04 2.12
864 11381 8.924303 TGTGCCATATATACTATTACCTCCATC 58.076 37.037 0.00 0.00 0.00 3.51
921 11439 0.108615 ACAAAGCACGGAGGATCGAG 60.109 55.000 0.00 0.00 34.37 4.04
933 11456 7.307514 GCACGGAGGATCGAGATATATACTAAG 60.308 44.444 0.00 0.00 34.37 2.18
934 11457 7.927092 CACGGAGGATCGAGATATATACTAAGA 59.073 40.741 0.00 0.00 34.37 2.10
935 11458 8.484575 ACGGAGGATCGAGATATATACTAAGAA 58.515 37.037 0.00 0.00 34.37 2.52
961 11512 3.906008 CACAAAAATGACGCGGAAACTAG 59.094 43.478 12.47 0.00 0.00 2.57
972 11527 1.017701 GGAAACTAGGGCGTCGTTGG 61.018 60.000 0.00 0.00 0.00 3.77
1131 11714 2.611518 CTAGTCAGCAGCAACACTACC 58.388 52.381 0.00 0.00 0.00 3.18
1132 11715 0.319900 AGTCAGCAGCAACACTACCG 60.320 55.000 0.00 0.00 0.00 4.02
1133 11716 1.667830 TCAGCAGCAACACTACCGC 60.668 57.895 0.00 0.00 0.00 5.68
1134 11717 2.358737 AGCAGCAACACTACCGCC 60.359 61.111 0.00 0.00 0.00 6.13
1136 11719 2.391389 GCAGCAACACTACCGCCTC 61.391 63.158 0.00 0.00 0.00 4.70
1137 11720 1.293498 CAGCAACACTACCGCCTCT 59.707 57.895 0.00 0.00 0.00 3.69
1138 11721 0.737715 CAGCAACACTACCGCCTCTC 60.738 60.000 0.00 0.00 0.00 3.20
1139 11722 1.185618 AGCAACACTACCGCCTCTCA 61.186 55.000 0.00 0.00 0.00 3.27
1142 11725 2.489971 CAACACTACCGCCTCTCAAAA 58.510 47.619 0.00 0.00 0.00 2.44
1143 11726 2.875933 CAACACTACCGCCTCTCAAAAA 59.124 45.455 0.00 0.00 0.00 1.94
1227 11814 2.668550 GGCGACGGCAAGGTTTCT 60.669 61.111 17.49 0.00 42.47 2.52
1363 15276 0.251386 AGAGTTCTCGAGACTGGCCA 60.251 55.000 16.36 4.71 0.00 5.36
1464 15395 1.135199 TCTGCGGAAGACACGATTACC 60.135 52.381 0.00 0.00 0.00 2.85
1657 15601 9.481340 GCATTCTTCTAGATCACATACAATGTA 57.519 33.333 0.00 0.00 42.70 2.29
1751 15695 5.209659 AGGATTTGTAATCCGTCTCCTACT 58.790 41.667 11.65 0.00 42.87 2.57
1775 15719 2.526432 TCTTTAGGAGAGGCGTCTTGT 58.474 47.619 10.79 3.68 30.97 3.16
1779 15723 0.543174 AGGAGAGGCGTCTTGTCCTT 60.543 55.000 14.52 1.95 34.77 3.36
1833 15779 8.051535 CCTAGGCTCAATAATACATCCATCATT 58.948 37.037 0.00 0.00 0.00 2.57
1835 15781 8.345724 AGGCTCAATAATACATCCATCATTTC 57.654 34.615 0.00 0.00 0.00 2.17
1851 15799 3.593328 TCATTTCCCACCAATCCTCTCTT 59.407 43.478 0.00 0.00 0.00 2.85
1951 15899 3.461773 CGGTCGGCCTCCATGACT 61.462 66.667 3.66 0.00 33.21 3.41
1995 15943 4.867599 CTAGGGTTCGTCCGCCGC 62.868 72.222 0.00 0.00 37.00 6.53
2100 16051 6.311690 TGATCGGTGTTTTTCTTTTTGGTTTC 59.688 34.615 0.00 0.00 0.00 2.78
2102 16053 4.201637 CGGTGTTTTTCTTTTTGGTTTCCG 60.202 41.667 0.00 0.00 0.00 4.30
2103 16054 4.930405 GGTGTTTTTCTTTTTGGTTTCCGA 59.070 37.500 0.00 0.00 0.00 4.55
2104 16055 5.583061 GGTGTTTTTCTTTTTGGTTTCCGAT 59.417 36.000 0.00 0.00 0.00 4.18
2105 16056 6.237996 GGTGTTTTTCTTTTTGGTTTCCGATC 60.238 38.462 0.00 0.00 0.00 3.69
2106 16057 6.311690 GTGTTTTTCTTTTTGGTTTCCGATCA 59.688 34.615 0.00 0.00 0.00 2.92
2107 16058 6.874134 TGTTTTTCTTTTTGGTTTCCGATCAA 59.126 30.769 0.00 0.00 0.00 2.57
2108 16059 7.064016 TGTTTTTCTTTTTGGTTTCCGATCAAG 59.936 33.333 0.00 0.00 0.00 3.02
2110 16061 5.432885 TCTTTTTGGTTTCCGATCAAGAC 57.567 39.130 0.00 0.00 0.00 3.01
2112 16063 2.940994 TTGGTTTCCGATCAAGACCA 57.059 45.000 3.98 3.98 38.54 4.02
2113 16064 2.178912 TGGTTTCCGATCAAGACCAC 57.821 50.000 3.98 0.00 35.58 4.16
2114 16065 1.271163 TGGTTTCCGATCAAGACCACC 60.271 52.381 3.98 4.20 35.58 4.61
2115 16066 1.076332 GTTTCCGATCAAGACCACCG 58.924 55.000 0.00 0.00 0.00 4.94
2119 16107 2.158959 CGATCAAGACCACCGCGAC 61.159 63.158 8.23 0.00 0.00 5.19
2378 16382 3.692406 GTCACCCGCCTCCGTCTT 61.692 66.667 0.00 0.00 0.00 3.01
2383 16387 2.050350 CCCGCCTCCGTCTTGTCTA 61.050 63.158 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.680903 TGCCTTACACTACAAGTCTACTATAAC 58.319 37.037 0.00 0.00 0.00 1.89
10 11 7.713734 TTGCCTTACACTACAAGTCTACTAT 57.286 36.000 0.00 0.00 0.00 2.12
11 12 7.154435 CTTGCCTTACACTACAAGTCTACTA 57.846 40.000 0.00 0.00 35.81 1.82
12 13 6.026947 CTTGCCTTACACTACAAGTCTACT 57.973 41.667 0.00 0.00 35.81 2.57
18 19 7.849804 ATCAATACTTGCCTTACACTACAAG 57.150 36.000 0.00 0.00 43.99 3.16
19 20 9.378551 CTAATCAATACTTGCCTTACACTACAA 57.621 33.333 0.00 0.00 0.00 2.41
20 21 8.755028 TCTAATCAATACTTGCCTTACACTACA 58.245 33.333 0.00 0.00 0.00 2.74
21 22 9.250624 CTCTAATCAATACTTGCCTTACACTAC 57.749 37.037 0.00 0.00 0.00 2.73
22 23 9.197306 TCTCTAATCAATACTTGCCTTACACTA 57.803 33.333 0.00 0.00 0.00 2.74
23 24 7.982354 GTCTCTAATCAATACTTGCCTTACACT 59.018 37.037 0.00 0.00 0.00 3.55
24 25 7.224949 GGTCTCTAATCAATACTTGCCTTACAC 59.775 40.741 0.00 0.00 0.00 2.90
25 26 7.272978 GGTCTCTAATCAATACTTGCCTTACA 58.727 38.462 0.00 0.00 0.00 2.41
26 27 6.421202 CGGTCTCTAATCAATACTTGCCTTAC 59.579 42.308 0.00 0.00 0.00 2.34
27 28 6.322969 TCGGTCTCTAATCAATACTTGCCTTA 59.677 38.462 0.00 0.00 0.00 2.69
28 29 5.128827 TCGGTCTCTAATCAATACTTGCCTT 59.871 40.000 0.00 0.00 0.00 4.35
29 30 4.649674 TCGGTCTCTAATCAATACTTGCCT 59.350 41.667 0.00 0.00 0.00 4.75
30 31 4.945246 TCGGTCTCTAATCAATACTTGCC 58.055 43.478 0.00 0.00 0.00 4.52
31 32 4.446051 GCTCGGTCTCTAATCAATACTTGC 59.554 45.833 0.00 0.00 0.00 4.01
32 33 4.985409 GGCTCGGTCTCTAATCAATACTTG 59.015 45.833 0.00 0.00 0.00 3.16
33 34 4.261656 CGGCTCGGTCTCTAATCAATACTT 60.262 45.833 0.00 0.00 0.00 2.24
34 35 3.253677 CGGCTCGGTCTCTAATCAATACT 59.746 47.826 0.00 0.00 0.00 2.12
35 36 3.566523 CGGCTCGGTCTCTAATCAATAC 58.433 50.000 0.00 0.00 0.00 1.89
36 37 2.557056 CCGGCTCGGTCTCTAATCAATA 59.443 50.000 5.56 0.00 42.73 1.90
37 38 1.341531 CCGGCTCGGTCTCTAATCAAT 59.658 52.381 5.56 0.00 42.73 2.57
38 39 0.744874 CCGGCTCGGTCTCTAATCAA 59.255 55.000 5.56 0.00 42.73 2.57
39 40 2.415825 CCGGCTCGGTCTCTAATCA 58.584 57.895 5.56 0.00 42.73 2.57
53 54 4.327885 CTCATAAGAGCGTCCGGC 57.672 61.111 0.00 0.00 44.05 6.13
61 62 2.029666 CCGGCCGGCTCATAAGAG 59.970 66.667 34.96 3.26 44.96 2.85
62 63 3.546543 CCCGGCCGGCTCATAAGA 61.547 66.667 39.46 0.00 0.00 2.10
63 64 3.546543 TCCCGGCCGGCTCATAAG 61.547 66.667 39.46 22.98 0.00 1.73
64 65 3.857038 GTCCCGGCCGGCTCATAA 61.857 66.667 39.46 15.60 0.00 1.90
65 66 4.853142 AGTCCCGGCCGGCTCATA 62.853 66.667 39.46 17.51 0.00 2.15
69 70 4.772231 TTAGAGTCCCGGCCGGCT 62.772 66.667 39.46 30.53 0.00 5.52
70 71 4.222847 CTTAGAGTCCCGGCCGGC 62.223 72.222 39.46 26.05 0.00 6.13
71 72 3.537874 CCTTAGAGTCCCGGCCGG 61.538 72.222 37.99 37.99 0.00 6.13
72 73 3.537874 CCCTTAGAGTCCCGGCCG 61.538 72.222 21.04 21.04 0.00 6.13
73 74 3.862991 GCCCTTAGAGTCCCGGCC 61.863 72.222 0.00 0.00 33.30 6.13
74 75 2.764547 AGCCCTTAGAGTCCCGGC 60.765 66.667 0.00 0.00 40.03 6.13
75 76 3.095347 GCAGCCCTTAGAGTCCCGG 62.095 68.421 0.00 0.00 0.00 5.73
76 77 2.060980 AGCAGCCCTTAGAGTCCCG 61.061 63.158 0.00 0.00 0.00 5.14
77 78 1.524482 CAGCAGCCCTTAGAGTCCC 59.476 63.158 0.00 0.00 0.00 4.46
78 79 1.524482 CCAGCAGCCCTTAGAGTCC 59.476 63.158 0.00 0.00 0.00 3.85
79 80 1.524482 CCCAGCAGCCCTTAGAGTC 59.476 63.158 0.00 0.00 0.00 3.36
80 81 2.674220 GCCCAGCAGCCCTTAGAGT 61.674 63.158 0.00 0.00 0.00 3.24
81 82 2.191641 GCCCAGCAGCCCTTAGAG 59.808 66.667 0.00 0.00 0.00 2.43
82 83 3.785859 CGCCCAGCAGCCCTTAGA 61.786 66.667 0.00 0.00 0.00 2.10
83 84 4.101448 ACGCCCAGCAGCCCTTAG 62.101 66.667 0.00 0.00 0.00 2.18
84 85 4.096003 GACGCCCAGCAGCCCTTA 62.096 66.667 0.00 0.00 0.00 2.69
96 97 7.816226 CCCTTTATATAAGGAGGCTGACGCC 62.816 52.000 6.18 0.00 43.88 5.68
97 98 4.246458 CCTTTATATAAGGAGGCTGACGC 58.754 47.826 6.18 0.00 39.81 5.19
98 99 4.527038 TCCCTTTATATAAGGAGGCTGACG 59.473 45.833 6.18 0.00 39.81 4.35
99 100 6.270231 TCTTCCCTTTATATAAGGAGGCTGAC 59.730 42.308 6.18 0.00 39.81 3.51
100 101 6.270231 GTCTTCCCTTTATATAAGGAGGCTGA 59.730 42.308 6.18 2.83 39.81 4.26
101 102 6.468543 GTCTTCCCTTTATATAAGGAGGCTG 58.531 44.000 6.18 0.90 39.81 4.85
102 103 5.548446 GGTCTTCCCTTTATATAAGGAGGCT 59.452 44.000 6.18 0.00 39.81 4.58
103 104 5.806818 GGTCTTCCCTTTATATAAGGAGGC 58.193 45.833 6.18 0.00 39.81 4.70
129 130 3.793144 CTCGCCTTGAACCGCTGC 61.793 66.667 0.00 0.00 0.00 5.25
130 131 1.667830 TTCTCGCCTTGAACCGCTG 60.668 57.895 0.00 0.00 0.00 5.18
131 132 1.668151 GTTCTCGCCTTGAACCGCT 60.668 57.895 0.00 0.00 38.19 5.52
132 133 1.503818 TTGTTCTCGCCTTGAACCGC 61.504 55.000 0.00 0.00 42.04 5.68
133 134 1.128692 GATTGTTCTCGCCTTGAACCG 59.871 52.381 0.00 0.00 42.04 4.44
134 135 2.416893 GAGATTGTTCTCGCCTTGAACC 59.583 50.000 0.00 0.00 42.04 3.62
135 136 3.731274 GAGATTGTTCTCGCCTTGAAC 57.269 47.619 0.00 0.00 39.14 3.18
144 145 4.094757 CGGCTCTCGATGAGATTGTTCTC 61.095 52.174 13.83 0.00 45.39 2.87
145 146 2.223688 CGGCTCTCGATGAGATTGTTCT 60.224 50.000 13.83 0.00 45.39 3.01
146 147 2.123342 CGGCTCTCGATGAGATTGTTC 58.877 52.381 13.83 0.00 45.39 3.18
147 148 1.202463 CCGGCTCTCGATGAGATTGTT 60.202 52.381 13.83 0.00 45.39 2.83
148 149 0.387202 CCGGCTCTCGATGAGATTGT 59.613 55.000 13.83 0.00 45.39 2.71
149 150 0.319383 CCCGGCTCTCGATGAGATTG 60.319 60.000 13.83 4.63 45.39 2.67
150 151 2.045280 CCCGGCTCTCGATGAGATT 58.955 57.895 13.83 0.00 45.39 2.40
151 152 2.569354 GCCCGGCTCTCGATGAGAT 61.569 63.158 13.83 0.00 45.39 2.75
152 153 3.219928 GCCCGGCTCTCGATGAGA 61.220 66.667 13.83 0.00 45.39 3.27
153 154 1.527433 TATGCCCGGCTCTCGATGAG 61.527 60.000 11.61 7.32 45.33 2.90
154 155 1.527433 CTATGCCCGGCTCTCGATGA 61.527 60.000 11.61 0.00 42.43 2.92
155 156 1.080230 CTATGCCCGGCTCTCGATG 60.080 63.158 11.61 0.00 42.43 3.84
156 157 2.936912 GCTATGCCCGGCTCTCGAT 61.937 63.158 11.61 0.00 42.43 3.59
157 158 3.606662 GCTATGCCCGGCTCTCGA 61.607 66.667 11.61 0.00 42.43 4.04
158 159 3.610669 AGCTATGCCCGGCTCTCG 61.611 66.667 11.61 0.00 32.98 4.04
159 160 2.030262 CAGCTATGCCCGGCTCTC 59.970 66.667 11.61 0.00 36.59 3.20
160 161 1.915078 AAACAGCTATGCCCGGCTCT 61.915 55.000 11.61 0.34 36.59 4.09
161 162 0.179056 TAAACAGCTATGCCCGGCTC 60.179 55.000 11.61 0.00 36.59 4.70
162 163 0.179045 CTAAACAGCTATGCCCGGCT 60.179 55.000 11.61 0.00 39.60 5.52
163 164 1.786049 GCTAAACAGCTATGCCCGGC 61.786 60.000 1.04 1.04 0.00 6.13
164 165 0.179045 AGCTAAACAGCTATGCCCGG 60.179 55.000 0.00 0.00 44.28 5.73
165 166 1.221414 GAGCTAAACAGCTATGCCCG 58.779 55.000 0.00 0.00 46.36 6.13
166 167 1.598882 GGAGCTAAACAGCTATGCCC 58.401 55.000 0.00 0.00 46.36 5.36
167 168 1.141858 AGGGAGCTAAACAGCTATGCC 59.858 52.381 0.00 0.00 46.36 4.40
168 169 2.216898 CAGGGAGCTAAACAGCTATGC 58.783 52.381 0.00 0.00 46.36 3.14
169 170 2.843701 CCAGGGAGCTAAACAGCTATG 58.156 52.381 0.00 0.00 46.36 2.23
170 171 1.141858 GCCAGGGAGCTAAACAGCTAT 59.858 52.381 0.00 0.00 46.36 2.97
171 172 0.541863 GCCAGGGAGCTAAACAGCTA 59.458 55.000 0.00 0.00 46.36 3.32
173 174 2.109126 CGCCAGGGAGCTAAACAGC 61.109 63.158 0.00 0.00 0.00 4.40
174 175 0.179000 ATCGCCAGGGAGCTAAACAG 59.821 55.000 0.00 0.00 0.00 3.16
175 176 0.178068 GATCGCCAGGGAGCTAAACA 59.822 55.000 0.00 0.00 0.00 2.83
176 177 0.876342 CGATCGCCAGGGAGCTAAAC 60.876 60.000 0.26 0.00 0.00 2.01
177 178 1.327690 ACGATCGCCAGGGAGCTAAA 61.328 55.000 16.60 0.00 0.00 1.85
178 179 0.466739 TACGATCGCCAGGGAGCTAA 60.467 55.000 16.60 0.00 0.00 3.09
179 180 0.466739 TTACGATCGCCAGGGAGCTA 60.467 55.000 16.60 0.00 0.00 3.32
180 181 1.756950 TTACGATCGCCAGGGAGCT 60.757 57.895 16.60 0.00 0.00 4.09
181 182 1.591863 GTTACGATCGCCAGGGAGC 60.592 63.158 16.60 0.00 0.00 4.70
182 183 1.067582 GGTTACGATCGCCAGGGAG 59.932 63.158 16.60 0.00 0.00 4.30
183 184 2.428925 GGGTTACGATCGCCAGGGA 61.429 63.158 16.60 0.00 0.00 4.20
184 185 1.111116 TAGGGTTACGATCGCCAGGG 61.111 60.000 16.60 0.00 0.00 4.45
185 186 0.748450 TTAGGGTTACGATCGCCAGG 59.252 55.000 16.60 0.00 0.00 4.45
186 187 2.035449 TGATTAGGGTTACGATCGCCAG 59.965 50.000 16.60 0.00 0.00 4.85
187 188 2.033372 TGATTAGGGTTACGATCGCCA 58.967 47.619 16.60 0.00 0.00 5.69
188 189 2.806608 TGATTAGGGTTACGATCGCC 57.193 50.000 16.60 8.46 0.00 5.54
189 190 5.693104 TGTTATTGATTAGGGTTACGATCGC 59.307 40.000 16.60 0.00 0.00 4.58
190 191 6.145048 GGTGTTATTGATTAGGGTTACGATCG 59.855 42.308 14.88 14.88 0.00 3.69
191 192 7.215085 AGGTGTTATTGATTAGGGTTACGATC 58.785 38.462 0.00 0.00 0.00 3.69
192 193 7.133133 AGGTGTTATTGATTAGGGTTACGAT 57.867 36.000 0.00 0.00 0.00 3.73
193 194 6.549433 AGGTGTTATTGATTAGGGTTACGA 57.451 37.500 0.00 0.00 0.00 3.43
194 195 5.461078 CGAGGTGTTATTGATTAGGGTTACG 59.539 44.000 0.00 0.00 0.00 3.18
195 196 6.576185 TCGAGGTGTTATTGATTAGGGTTAC 58.424 40.000 0.00 0.00 0.00 2.50
196 197 6.795144 TCGAGGTGTTATTGATTAGGGTTA 57.205 37.500 0.00 0.00 0.00 2.85
197 198 5.687166 TCGAGGTGTTATTGATTAGGGTT 57.313 39.130 0.00 0.00 0.00 4.11
198 199 5.189145 AGTTCGAGGTGTTATTGATTAGGGT 59.811 40.000 0.00 0.00 0.00 4.34
199 200 5.523916 CAGTTCGAGGTGTTATTGATTAGGG 59.476 44.000 0.00 0.00 0.00 3.53
200 201 5.523916 CCAGTTCGAGGTGTTATTGATTAGG 59.476 44.000 0.00 0.00 0.00 2.69
201 202 6.255887 GTCCAGTTCGAGGTGTTATTGATTAG 59.744 42.308 0.00 0.00 0.00 1.73
202 203 6.103997 GTCCAGTTCGAGGTGTTATTGATTA 58.896 40.000 0.00 0.00 0.00 1.75
203 204 4.935808 GTCCAGTTCGAGGTGTTATTGATT 59.064 41.667 0.00 0.00 0.00 2.57
204 205 4.504858 GTCCAGTTCGAGGTGTTATTGAT 58.495 43.478 0.00 0.00 0.00 2.57
205 206 3.613193 CGTCCAGTTCGAGGTGTTATTGA 60.613 47.826 0.00 0.00 0.00 2.57
206 207 2.666508 CGTCCAGTTCGAGGTGTTATTG 59.333 50.000 0.00 0.00 0.00 1.90
207 208 2.298163 ACGTCCAGTTCGAGGTGTTATT 59.702 45.455 0.00 0.00 30.03 1.40
208 209 1.891150 ACGTCCAGTTCGAGGTGTTAT 59.109 47.619 0.00 0.00 30.03 1.89
209 210 1.321474 ACGTCCAGTTCGAGGTGTTA 58.679 50.000 0.00 0.00 30.03 2.41
210 211 1.268899 CTACGTCCAGTTCGAGGTGTT 59.731 52.381 0.00 0.00 33.23 3.32
211 212 0.879765 CTACGTCCAGTTCGAGGTGT 59.120 55.000 0.00 0.00 33.23 4.16
212 213 0.170561 CCTACGTCCAGTTCGAGGTG 59.829 60.000 0.00 0.00 33.23 4.00
213 214 1.593296 GCCTACGTCCAGTTCGAGGT 61.593 60.000 0.00 0.00 35.23 3.85
214 215 1.139095 GCCTACGTCCAGTTCGAGG 59.861 63.158 0.00 0.00 0.00 4.63
215 216 0.526662 AAGCCTACGTCCAGTTCGAG 59.473 55.000 0.00 0.00 0.00 4.04
216 217 0.963962 AAAGCCTACGTCCAGTTCGA 59.036 50.000 0.00 0.00 0.00 3.71
217 218 1.792006 AAAAGCCTACGTCCAGTTCG 58.208 50.000 0.00 0.00 0.00 3.95
218 219 2.998670 GGTAAAAGCCTACGTCCAGTTC 59.001 50.000 0.00 0.00 0.00 3.01
219 220 2.636403 AGGTAAAAGCCTACGTCCAGTT 59.364 45.455 0.00 0.00 37.04 3.16
220 221 2.254508 AGGTAAAAGCCTACGTCCAGT 58.745 47.619 0.00 0.00 37.04 4.00
221 222 3.259902 GAAGGTAAAAGCCTACGTCCAG 58.740 50.000 0.00 0.00 38.03 3.86
222 223 2.633967 TGAAGGTAAAAGCCTACGTCCA 59.366 45.455 0.00 0.00 38.03 4.02
223 224 2.998670 GTGAAGGTAAAAGCCTACGTCC 59.001 50.000 0.00 0.00 38.03 4.79
224 225 2.998670 GGTGAAGGTAAAAGCCTACGTC 59.001 50.000 0.00 0.00 38.03 4.34
225 226 2.611224 CGGTGAAGGTAAAAGCCTACGT 60.611 50.000 0.00 0.00 38.03 3.57
226 227 1.997606 CGGTGAAGGTAAAAGCCTACG 59.002 52.381 0.00 0.00 38.03 3.51
227 228 3.049708 ACGGTGAAGGTAAAAGCCTAC 57.950 47.619 0.00 0.00 38.03 3.18
228 229 4.322953 CCTTACGGTGAAGGTAAAAGCCTA 60.323 45.833 5.17 0.00 41.09 3.93
229 230 3.558533 CCTTACGGTGAAGGTAAAAGCCT 60.559 47.826 5.17 0.00 41.09 4.58
230 231 2.745821 CCTTACGGTGAAGGTAAAAGCC 59.254 50.000 5.17 0.00 41.09 4.35
231 232 2.745821 CCCTTACGGTGAAGGTAAAAGC 59.254 50.000 10.90 0.00 44.02 3.51
232 233 3.340928 CCCCTTACGGTGAAGGTAAAAG 58.659 50.000 10.90 0.00 44.02 2.27
233 234 2.552809 GCCCCTTACGGTGAAGGTAAAA 60.553 50.000 10.90 0.00 44.02 1.52
234 235 1.003464 GCCCCTTACGGTGAAGGTAAA 59.997 52.381 10.90 0.00 44.02 2.01
235 236 0.614812 GCCCCTTACGGTGAAGGTAA 59.385 55.000 10.90 0.00 44.02 2.85
236 237 1.266867 GGCCCCTTACGGTGAAGGTA 61.267 60.000 10.90 0.00 44.02 3.08
237 238 2.599757 GGCCCCTTACGGTGAAGGT 61.600 63.158 10.90 0.00 44.02 3.50
238 239 2.271173 GGCCCCTTACGGTGAAGG 59.729 66.667 0.00 6.14 44.96 3.46
239 240 2.125269 CGGCCCCTTACGGTGAAG 60.125 66.667 0.00 0.00 0.00 3.02
240 241 2.215625 TTCGGCCCCTTACGGTGAA 61.216 57.895 0.00 0.00 0.00 3.18
241 242 2.604079 TTCGGCCCCTTACGGTGA 60.604 61.111 0.00 0.00 0.00 4.02
242 243 2.435410 GTTCGGCCCCTTACGGTG 60.435 66.667 0.00 0.00 0.00 4.94
243 244 3.709633 GGTTCGGCCCCTTACGGT 61.710 66.667 0.00 0.00 0.00 4.83
244 245 3.675619 CTGGTTCGGCCCCTTACGG 62.676 68.421 0.00 0.00 36.04 4.02
245 246 1.606885 TACTGGTTCGGCCCCTTACG 61.607 60.000 0.00 0.00 36.04 3.18
246 247 0.835276 ATACTGGTTCGGCCCCTTAC 59.165 55.000 0.00 0.00 36.04 2.34
247 248 2.475339 TATACTGGTTCGGCCCCTTA 57.525 50.000 0.00 0.00 36.04 2.69
248 249 1.587066 TTATACTGGTTCGGCCCCTT 58.413 50.000 0.00 0.00 36.04 3.95
249 250 1.211212 GTTTATACTGGTTCGGCCCCT 59.789 52.381 0.00 0.00 36.04 4.79
250 251 1.671979 GTTTATACTGGTTCGGCCCC 58.328 55.000 0.00 0.00 36.04 5.80
251 252 1.671979 GGTTTATACTGGTTCGGCCC 58.328 55.000 0.00 0.00 36.04 5.80
252 253 1.211212 AGGGTTTATACTGGTTCGGCC 59.789 52.381 0.00 0.00 37.90 6.13
253 254 2.558378 GAGGGTTTATACTGGTTCGGC 58.442 52.381 0.00 0.00 0.00 5.54
254 255 2.167075 ACGAGGGTTTATACTGGTTCGG 59.833 50.000 0.00 0.00 0.00 4.30
255 256 3.184541 CACGAGGGTTTATACTGGTTCG 58.815 50.000 0.00 0.00 0.00 3.95
256 257 4.198028 ACACGAGGGTTTATACTGGTTC 57.802 45.455 0.00 0.00 0.00 3.62
257 258 4.628963 AACACGAGGGTTTATACTGGTT 57.371 40.909 0.00 0.00 0.00 3.67
258 259 4.285260 AGAAACACGAGGGTTTATACTGGT 59.715 41.667 3.18 0.00 40.85 4.00
259 260 4.828829 AGAAACACGAGGGTTTATACTGG 58.171 43.478 3.18 0.00 40.85 4.00
260 261 5.699458 ACAAGAAACACGAGGGTTTATACTG 59.301 40.000 3.18 0.21 40.85 2.74
261 262 5.861727 ACAAGAAACACGAGGGTTTATACT 58.138 37.500 3.18 0.00 40.85 2.12
262 263 5.121298 GGACAAGAAACACGAGGGTTTATAC 59.879 44.000 3.18 0.00 40.85 1.47
263 264 5.240121 GGACAAGAAACACGAGGGTTTATA 58.760 41.667 3.18 0.00 40.85 0.98
264 265 4.070009 GGACAAGAAACACGAGGGTTTAT 58.930 43.478 3.18 0.00 40.85 1.40
265 266 3.469739 GGACAAGAAACACGAGGGTTTA 58.530 45.455 3.18 0.00 40.85 2.01
266 267 2.294979 GGACAAGAAACACGAGGGTTT 58.705 47.619 2.77 2.77 43.30 3.27
267 268 1.476291 GGGACAAGAAACACGAGGGTT 60.476 52.381 0.00 0.00 0.00 4.11
268 269 0.108019 GGGACAAGAAACACGAGGGT 59.892 55.000 0.00 0.00 0.00 4.34
269 270 0.949105 CGGGACAAGAAACACGAGGG 60.949 60.000 0.00 0.00 34.69 4.30
270 271 0.249741 ACGGGACAAGAAACACGAGG 60.250 55.000 0.00 0.00 36.71 4.63
271 272 2.427232 TACGGGACAAGAAACACGAG 57.573 50.000 0.00 0.00 36.71 4.18
272 273 4.236935 GTTATACGGGACAAGAAACACGA 58.763 43.478 0.00 0.00 36.71 4.35
273 274 3.368843 GGTTATACGGGACAAGAAACACG 59.631 47.826 0.00 0.00 38.94 4.49
274 275 3.686241 GGGTTATACGGGACAAGAAACAC 59.314 47.826 0.00 0.00 0.00 3.32
275 276 3.307621 GGGGTTATACGGGACAAGAAACA 60.308 47.826 0.00 0.00 0.00 2.83
276 277 3.054875 AGGGGTTATACGGGACAAGAAAC 60.055 47.826 0.00 0.00 0.00 2.78
277 278 3.183801 AGGGGTTATACGGGACAAGAAA 58.816 45.455 0.00 0.00 0.00 2.52
278 279 2.836667 AGGGGTTATACGGGACAAGAA 58.163 47.619 0.00 0.00 0.00 2.52
279 280 2.555732 AGGGGTTATACGGGACAAGA 57.444 50.000 0.00 0.00 0.00 3.02
280 281 2.502538 TGAAGGGGTTATACGGGACAAG 59.497 50.000 0.00 0.00 0.00 3.16
281 282 2.549082 TGAAGGGGTTATACGGGACAA 58.451 47.619 0.00 0.00 0.00 3.18
282 283 2.250921 TGAAGGGGTTATACGGGACA 57.749 50.000 0.00 0.00 0.00 4.02
283 284 2.744166 GCTTGAAGGGGTTATACGGGAC 60.744 54.545 0.00 0.00 0.00 4.46
284 285 1.487558 GCTTGAAGGGGTTATACGGGA 59.512 52.381 0.00 0.00 0.00 5.14
285 286 1.489230 AGCTTGAAGGGGTTATACGGG 59.511 52.381 0.00 0.00 0.00 5.28
286 287 3.203716 GAAGCTTGAAGGGGTTATACGG 58.796 50.000 2.10 0.00 0.00 4.02
287 288 3.118371 AGGAAGCTTGAAGGGGTTATACG 60.118 47.826 2.10 0.00 0.00 3.06
288 289 4.505324 AGGAAGCTTGAAGGGGTTATAC 57.495 45.455 2.10 0.00 0.00 1.47
289 290 5.286221 ACTAGGAAGCTTGAAGGGGTTATA 58.714 41.667 2.10 0.00 0.00 0.98
290 291 4.112331 ACTAGGAAGCTTGAAGGGGTTAT 58.888 43.478 2.10 0.00 0.00 1.89
291 292 3.527937 ACTAGGAAGCTTGAAGGGGTTA 58.472 45.455 2.10 0.00 0.00 2.85
292 293 2.349445 ACTAGGAAGCTTGAAGGGGTT 58.651 47.619 2.10 0.00 0.00 4.11
293 294 2.040412 CAACTAGGAAGCTTGAAGGGGT 59.960 50.000 2.10 0.00 0.00 4.95
294 295 2.716217 CAACTAGGAAGCTTGAAGGGG 58.284 52.381 2.10 0.00 0.00 4.79
295 296 2.087646 GCAACTAGGAAGCTTGAAGGG 58.912 52.381 2.10 0.00 0.00 3.95
296 297 1.734465 CGCAACTAGGAAGCTTGAAGG 59.266 52.381 2.10 0.00 0.00 3.46
297 298 2.688507 TCGCAACTAGGAAGCTTGAAG 58.311 47.619 2.10 0.19 0.00 3.02
298 299 2.831685 TCGCAACTAGGAAGCTTGAA 57.168 45.000 2.10 0.00 0.00 2.69
299 300 2.621338 CATCGCAACTAGGAAGCTTGA 58.379 47.619 2.10 0.00 0.00 3.02
300 301 1.667724 CCATCGCAACTAGGAAGCTTG 59.332 52.381 2.10 0.00 0.00 4.01
301 302 2.014068 GCCATCGCAACTAGGAAGCTT 61.014 52.381 0.00 0.00 34.03 3.74
302 303 0.462759 GCCATCGCAACTAGGAAGCT 60.463 55.000 0.00 0.00 34.03 3.74
303 304 0.462759 AGCCATCGCAACTAGGAAGC 60.463 55.000 0.00 0.00 37.52 3.86
304 305 1.576356 GAGCCATCGCAACTAGGAAG 58.424 55.000 0.00 0.00 37.52 3.46
305 306 0.178068 GGAGCCATCGCAACTAGGAA 59.822 55.000 0.00 0.00 37.52 3.36
306 307 0.975556 TGGAGCCATCGCAACTAGGA 60.976 55.000 0.00 0.00 37.52 2.94
307 308 0.811616 GTGGAGCCATCGCAACTAGG 60.812 60.000 0.00 0.00 37.52 3.02
308 309 1.148157 CGTGGAGCCATCGCAACTAG 61.148 60.000 0.00 0.00 37.52 2.57
309 310 1.153647 CGTGGAGCCATCGCAACTA 60.154 57.895 0.00 0.00 37.52 2.24
310 311 2.434884 CGTGGAGCCATCGCAACT 60.435 61.111 0.00 0.00 37.52 3.16
311 312 2.434185 TCGTGGAGCCATCGCAAC 60.434 61.111 0.00 0.00 37.52 4.17
312 313 1.600511 TAGTCGTGGAGCCATCGCAA 61.601 55.000 0.00 0.00 37.52 4.85
313 314 1.600511 TTAGTCGTGGAGCCATCGCA 61.601 55.000 0.00 0.00 37.52 5.10
314 315 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
315 316 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
316 317 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
317 318 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
318 319 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
319 320 1.677052 CTAGGACTTAGTCGTGGAGCC 59.323 57.143 16.60 0.00 32.19 4.70
320 321 1.065851 GCTAGGACTTAGTCGTGGAGC 59.934 57.143 19.72 15.76 32.19 4.70
321 322 2.614983 GAGCTAGGACTTAGTCGTGGAG 59.385 54.545 19.72 10.61 32.19 3.86
322 323 2.026542 TGAGCTAGGACTTAGTCGTGGA 60.027 50.000 19.72 0.65 32.19 4.02
323 324 2.366533 TGAGCTAGGACTTAGTCGTGG 58.633 52.381 16.60 14.69 32.77 4.94
324 325 3.181495 CCTTGAGCTAGGACTTAGTCGTG 60.181 52.174 16.60 8.49 37.50 4.35
325 326 3.018149 CCTTGAGCTAGGACTTAGTCGT 58.982 50.000 12.28 12.28 37.50 4.34
326 327 3.280295 TCCTTGAGCTAGGACTTAGTCG 58.720 50.000 6.27 0.00 39.40 4.18
334 335 1.759445 GCAGATGTCCTTGAGCTAGGA 59.241 52.381 0.72 0.72 42.02 2.94
335 336 1.202627 GGCAGATGTCCTTGAGCTAGG 60.203 57.143 0.00 0.00 36.59 3.02
336 337 1.537776 CGGCAGATGTCCTTGAGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
337 338 0.461548 CGGCAGATGTCCTTGAGCTA 59.538 55.000 0.00 0.00 0.00 3.32
338 339 1.220206 CGGCAGATGTCCTTGAGCT 59.780 57.895 0.00 0.00 0.00 4.09
339 340 1.078848 ACGGCAGATGTCCTTGAGC 60.079 57.895 0.00 0.00 0.00 4.26
340 341 0.247460 TCACGGCAGATGTCCTTGAG 59.753 55.000 0.00 0.00 29.84 3.02
341 342 0.037326 GTCACGGCAGATGTCCTTGA 60.037 55.000 0.00 0.00 30.61 3.02
342 343 0.320683 TGTCACGGCAGATGTCCTTG 60.321 55.000 0.00 0.00 0.00 3.61
343 344 0.396435 TTGTCACGGCAGATGTCCTT 59.604 50.000 0.00 0.00 0.00 3.36
344 345 0.615331 ATTGTCACGGCAGATGTCCT 59.385 50.000 0.00 0.00 0.00 3.85
345 346 1.398390 GAATTGTCACGGCAGATGTCC 59.602 52.381 0.00 0.00 0.00 4.02
346 347 1.398390 GGAATTGTCACGGCAGATGTC 59.602 52.381 0.00 0.00 0.00 3.06
347 348 1.271325 TGGAATTGTCACGGCAGATGT 60.271 47.619 0.00 0.00 0.00 3.06
348 349 1.131126 GTGGAATTGTCACGGCAGATG 59.869 52.381 0.00 0.00 0.00 2.90
349 350 1.453155 GTGGAATTGTCACGGCAGAT 58.547 50.000 0.00 0.00 0.00 2.90
350 351 2.927004 GTGGAATTGTCACGGCAGA 58.073 52.632 0.00 0.00 0.00 4.26
356 357 2.218603 AGGTTGTCGTGGAATTGTCAC 58.781 47.619 0.00 0.00 0.00 3.67
357 358 2.616376 CAAGGTTGTCGTGGAATTGTCA 59.384 45.455 0.00 0.00 0.00 3.58
358 359 2.616842 ACAAGGTTGTCGTGGAATTGTC 59.383 45.455 0.00 0.00 36.50 3.18
359 360 2.616842 GACAAGGTTGTCGTGGAATTGT 59.383 45.455 7.09 0.00 46.80 2.71
360 361 3.268013 GACAAGGTTGTCGTGGAATTG 57.732 47.619 7.09 0.00 46.80 2.32
370 371 8.062065 TCTTTGTTATGAAAAGACAAGGTTGT 57.938 30.769 0.00 0.00 45.65 3.32
371 372 8.925161 TTCTTTGTTATGAAAAGACAAGGTTG 57.075 30.769 0.00 0.00 41.98 3.77
372 373 9.586435 CTTTCTTTGTTATGAAAAGACAAGGTT 57.414 29.630 0.00 0.00 41.98 3.50
373 374 8.966868 TCTTTCTTTGTTATGAAAAGACAAGGT 58.033 29.630 14.04 0.00 41.98 3.50
374 375 9.237846 GTCTTTCTTTGTTATGAAAAGACAAGG 57.762 33.333 17.02 0.00 41.98 3.61
375 376 9.787532 TGTCTTTCTTTGTTATGAAAAGACAAG 57.212 29.630 20.52 12.06 41.98 3.16
376 377 9.787532 CTGTCTTTCTTTGTTATGAAAAGACAA 57.212 29.630 22.07 11.47 41.98 3.18
377 378 9.173021 TCTGTCTTTCTTTGTTATGAAAAGACA 57.827 29.630 21.10 21.10 41.98 3.41
378 379 9.657121 CTCTGTCTTTCTTTGTTATGAAAAGAC 57.343 33.333 15.71 15.71 41.98 3.01
379 380 9.613428 TCTCTGTCTTTCTTTGTTATGAAAAGA 57.387 29.630 0.00 0.00 40.88 2.52
380 381 9.875675 CTCTCTGTCTTTCTTTGTTATGAAAAG 57.124 33.333 0.00 0.00 36.22 2.27
381 382 9.613428 TCTCTCTGTCTTTCTTTGTTATGAAAA 57.387 29.630 0.00 0.00 32.69 2.29
382 383 9.265901 CTCTCTCTGTCTTTCTTTGTTATGAAA 57.734 33.333 0.00 0.00 0.00 2.69
383 384 8.642432 TCTCTCTCTGTCTTTCTTTGTTATGAA 58.358 33.333 0.00 0.00 0.00 2.57
384 385 8.183104 TCTCTCTCTGTCTTTCTTTGTTATGA 57.817 34.615 0.00 0.00 0.00 2.15
385 386 8.303156 TCTCTCTCTCTGTCTTTCTTTGTTATG 58.697 37.037 0.00 0.00 0.00 1.90
386 387 8.415950 TCTCTCTCTCTGTCTTTCTTTGTTAT 57.584 34.615 0.00 0.00 0.00 1.89
387 388 7.825331 TCTCTCTCTCTGTCTTTCTTTGTTA 57.175 36.000 0.00 0.00 0.00 2.41
388 389 6.723298 TCTCTCTCTCTGTCTTTCTTTGTT 57.277 37.500 0.00 0.00 0.00 2.83
389 390 6.723298 TTCTCTCTCTCTGTCTTTCTTTGT 57.277 37.500 0.00 0.00 0.00 2.83
390 391 6.983307 TGTTTCTCTCTCTCTGTCTTTCTTTG 59.017 38.462 0.00 0.00 0.00 2.77
391 392 7.118496 TGTTTCTCTCTCTCTGTCTTTCTTT 57.882 36.000 0.00 0.00 0.00 2.52
392 393 6.723298 TGTTTCTCTCTCTCTGTCTTTCTT 57.277 37.500 0.00 0.00 0.00 2.52
393 394 6.723298 TTGTTTCTCTCTCTCTGTCTTTCT 57.277 37.500 0.00 0.00 0.00 2.52
394 395 6.073819 GCTTTGTTTCTCTCTCTCTGTCTTTC 60.074 42.308 0.00 0.00 0.00 2.62
395 396 5.757808 GCTTTGTTTCTCTCTCTCTGTCTTT 59.242 40.000 0.00 0.00 0.00 2.52
396 397 5.296748 GCTTTGTTTCTCTCTCTCTGTCTT 58.703 41.667 0.00 0.00 0.00 3.01
397 398 4.558496 CGCTTTGTTTCTCTCTCTCTGTCT 60.558 45.833 0.00 0.00 0.00 3.41
398 399 3.672867 CGCTTTGTTTCTCTCTCTCTGTC 59.327 47.826 0.00 0.00 0.00 3.51
399 400 3.553922 CCGCTTTGTTTCTCTCTCTCTGT 60.554 47.826 0.00 0.00 0.00 3.41
400 401 2.992543 CCGCTTTGTTTCTCTCTCTCTG 59.007 50.000 0.00 0.00 0.00 3.35
401 402 2.028567 CCCGCTTTGTTTCTCTCTCTCT 60.029 50.000 0.00 0.00 0.00 3.10
402 403 2.289133 ACCCGCTTTGTTTCTCTCTCTC 60.289 50.000 0.00 0.00 0.00 3.20
403 404 1.694696 ACCCGCTTTGTTTCTCTCTCT 59.305 47.619 0.00 0.00 0.00 3.10
404 405 2.171341 ACCCGCTTTGTTTCTCTCTC 57.829 50.000 0.00 0.00 0.00 3.20
405 406 2.618709 CAAACCCGCTTTGTTTCTCTCT 59.381 45.455 0.00 0.00 35.41 3.10
406 407 2.616842 TCAAACCCGCTTTGTTTCTCTC 59.383 45.455 4.33 0.00 40.35 3.20
407 408 2.650322 TCAAACCCGCTTTGTTTCTCT 58.350 42.857 4.33 0.00 40.35 3.10
408 409 3.113322 GTTCAAACCCGCTTTGTTTCTC 58.887 45.455 4.33 0.00 40.35 2.87
409 410 2.478879 CGTTCAAACCCGCTTTGTTTCT 60.479 45.455 4.33 0.00 40.35 2.52
410 411 1.849829 CGTTCAAACCCGCTTTGTTTC 59.150 47.619 4.33 0.00 40.35 2.78
411 412 1.470112 CCGTTCAAACCCGCTTTGTTT 60.470 47.619 4.33 0.00 40.35 2.83
412 413 0.101579 CCGTTCAAACCCGCTTTGTT 59.898 50.000 4.33 0.00 40.35 2.83
413 414 1.033202 ACCGTTCAAACCCGCTTTGT 61.033 50.000 4.33 0.00 40.35 2.83
414 415 0.101579 AACCGTTCAAACCCGCTTTG 59.898 50.000 0.00 0.00 40.76 2.77
415 416 0.818938 AAACCGTTCAAACCCGCTTT 59.181 45.000 0.00 0.00 0.00 3.51
416 417 0.101579 CAAACCGTTCAAACCCGCTT 59.898 50.000 0.00 0.00 0.00 4.68
417 418 0.748729 TCAAACCGTTCAAACCCGCT 60.749 50.000 0.00 0.00 0.00 5.52
418 419 0.317519 CTCAAACCGTTCAAACCCGC 60.318 55.000 0.00 0.00 0.00 6.13
419 420 1.301423 TCTCAAACCGTTCAAACCCG 58.699 50.000 0.00 0.00 0.00 5.28
420 421 2.543031 GCTTCTCAAACCGTTCAAACCC 60.543 50.000 0.00 0.00 0.00 4.11
421 422 2.357952 AGCTTCTCAAACCGTTCAAACC 59.642 45.455 0.00 0.00 0.00 3.27
422 423 3.363178 CAGCTTCTCAAACCGTTCAAAC 58.637 45.455 0.00 0.00 0.00 2.93
423 424 2.223479 GCAGCTTCTCAAACCGTTCAAA 60.223 45.455 0.00 0.00 0.00 2.69
424 425 1.333619 GCAGCTTCTCAAACCGTTCAA 59.666 47.619 0.00 0.00 0.00 2.69
425 426 0.944386 GCAGCTTCTCAAACCGTTCA 59.056 50.000 0.00 0.00 0.00 3.18
426 427 0.944386 TGCAGCTTCTCAAACCGTTC 59.056 50.000 0.00 0.00 0.00 3.95
427 428 1.537202 GATGCAGCTTCTCAAACCGTT 59.463 47.619 0.00 0.00 0.00 4.44
428 429 1.160137 GATGCAGCTTCTCAAACCGT 58.840 50.000 0.00 0.00 0.00 4.83
429 430 0.095935 CGATGCAGCTTCTCAAACCG 59.904 55.000 0.00 0.00 0.00 4.44
430 431 1.442769 TCGATGCAGCTTCTCAAACC 58.557 50.000 0.00 0.00 0.00 3.27
431 432 2.481952 AGTTCGATGCAGCTTCTCAAAC 59.518 45.455 0.00 7.90 0.00 2.93
432 433 2.481568 CAGTTCGATGCAGCTTCTCAAA 59.518 45.455 0.00 0.00 0.00 2.69
433 434 2.071540 CAGTTCGATGCAGCTTCTCAA 58.928 47.619 0.00 0.00 0.00 3.02
434 435 1.001293 ACAGTTCGATGCAGCTTCTCA 59.999 47.619 0.00 0.00 0.00 3.27
435 436 1.719600 ACAGTTCGATGCAGCTTCTC 58.280 50.000 0.00 0.00 0.00 2.87
436 437 3.533606 ATACAGTTCGATGCAGCTTCT 57.466 42.857 0.00 0.00 0.00 2.85
437 438 4.363999 ACTATACAGTTCGATGCAGCTTC 58.636 43.478 0.00 0.00 0.00 3.86
438 439 4.392921 ACTATACAGTTCGATGCAGCTT 57.607 40.909 0.00 0.00 0.00 3.74
439 440 4.557695 GCTACTATACAGTTCGATGCAGCT 60.558 45.833 0.00 0.00 36.14 4.24
440 441 3.670991 GCTACTATACAGTTCGATGCAGC 59.329 47.826 0.00 0.00 36.14 5.25
441 442 4.860072 TGCTACTATACAGTTCGATGCAG 58.140 43.478 0.00 0.00 36.14 4.41
442 443 4.911514 TGCTACTATACAGTTCGATGCA 57.088 40.909 0.00 0.00 36.14 3.96
443 444 5.461526 TCATGCTACTATACAGTTCGATGC 58.538 41.667 0.00 0.00 36.14 3.91
444 445 5.570973 GCTCATGCTACTATACAGTTCGATG 59.429 44.000 0.00 0.00 36.14 3.84
445 446 5.704888 GCTCATGCTACTATACAGTTCGAT 58.295 41.667 0.00 0.00 36.14 3.59
446 447 5.109662 GCTCATGCTACTATACAGTTCGA 57.890 43.478 0.00 0.00 36.14 3.71
462 463 0.580578 GCATAGCACGTCAGCTCATG 59.419 55.000 3.33 7.92 45.26 3.07
497 498 4.520874 CGGAGAGAGTGCTTATTAGATGGA 59.479 45.833 0.00 0.00 0.00 3.41
498 499 4.321601 CCGGAGAGAGTGCTTATTAGATGG 60.322 50.000 0.00 0.00 0.00 3.51
503 504 4.954202 TCTTTCCGGAGAGAGTGCTTATTA 59.046 41.667 20.26 0.00 0.00 0.98
504 505 3.769844 TCTTTCCGGAGAGAGTGCTTATT 59.230 43.478 20.26 0.00 0.00 1.40
505 506 3.366396 TCTTTCCGGAGAGAGTGCTTAT 58.634 45.455 20.26 0.00 0.00 1.73
507 508 1.633774 TCTTTCCGGAGAGAGTGCTT 58.366 50.000 20.26 0.00 0.00 3.91
508 509 1.633774 TTCTTTCCGGAGAGAGTGCT 58.366 50.000 22.56 0.00 0.00 4.40
509 510 2.457366 TTTCTTTCCGGAGAGAGTGC 57.543 50.000 22.56 0.00 0.00 4.40
511 512 7.496263 GCTTTTATATTTCTTTCCGGAGAGAGT 59.504 37.037 22.56 17.73 0.00 3.24
512 513 7.306866 CGCTTTTATATTTCTTTCCGGAGAGAG 60.307 40.741 22.56 13.74 0.00 3.20
513 514 6.479001 CGCTTTTATATTTCTTTCCGGAGAGA 59.521 38.462 20.26 20.26 0.00 3.10
516 517 6.359480 ACGCTTTTATATTTCTTTCCGGAG 57.641 37.500 3.34 0.00 0.00 4.63
517 518 6.746745 AACGCTTTTATATTTCTTTCCGGA 57.253 33.333 0.00 0.00 0.00 5.14
518 519 7.691158 ACTAACGCTTTTATATTTCTTTCCGG 58.309 34.615 0.00 0.00 0.00 5.14
530 531 8.129211 GCCTCATATGAAAACTAACGCTTTTAT 58.871 33.333 6.90 0.00 0.00 1.40
531 532 7.119992 TGCCTCATATGAAAACTAACGCTTTTA 59.880 33.333 6.90 0.00 0.00 1.52
532 533 6.072175 TGCCTCATATGAAAACTAACGCTTTT 60.072 34.615 6.90 0.00 0.00 2.27
533 534 5.414454 TGCCTCATATGAAAACTAACGCTTT 59.586 36.000 6.90 0.00 0.00 3.51
534 535 4.941263 TGCCTCATATGAAAACTAACGCTT 59.059 37.500 6.90 0.00 0.00 4.68
538 539 7.334421 TCTCAACTGCCTCATATGAAAACTAAC 59.666 37.037 6.90 0.00 0.00 2.34
539 540 7.394016 TCTCAACTGCCTCATATGAAAACTAA 58.606 34.615 6.90 0.00 0.00 2.24
548 549 5.883685 TCAGATTCTCAACTGCCTCATAT 57.116 39.130 0.00 0.00 34.57 1.78
550 551 4.774660 ATCAGATTCTCAACTGCCTCAT 57.225 40.909 0.00 0.00 34.57 2.90
551 552 4.564782 AATCAGATTCTCAACTGCCTCA 57.435 40.909 0.00 0.00 34.57 3.86
574 575 8.744568 ATTAATTAGCTGGGAAGAGAGAAAAG 57.255 34.615 0.00 0.00 0.00 2.27
585 586 7.779798 AGTGCTTAATTGATTAATTAGCTGGGA 59.220 33.333 17.17 5.76 39.29 4.37
779 11179 3.120338 AGCACCACGAAATGTTAATGACG 60.120 43.478 0.00 0.00 0.00 4.35
803 11256 8.137437 CCTCAATTCCTTGCGTCAATTAATTAT 58.863 33.333 0.00 0.00 32.11 1.28
840 11355 9.674705 ATGATGGAGGTAATAGTATATATGGCA 57.325 33.333 0.00 0.00 0.00 4.92
854 11371 5.046159 AGTTTACCGTTGATGATGGAGGTAA 60.046 40.000 1.26 1.26 40.96 2.85
864 11381 5.389516 CCTTCGAAGAAGTTTACCGTTGATG 60.390 44.000 26.61 0.00 45.90 3.07
868 11385 3.070015 TCCCTTCGAAGAAGTTTACCGTT 59.930 43.478 26.61 0.00 45.90 4.44
907 11425 4.817464 AGTATATATCTCGATCCTCCGTGC 59.183 45.833 0.00 0.00 0.00 5.34
933 11456 3.978217 TCCGCGTCATTTTTGTGAAATTC 59.022 39.130 4.92 0.00 0.00 2.17
934 11457 3.971150 TCCGCGTCATTTTTGTGAAATT 58.029 36.364 4.92 0.00 0.00 1.82
935 11458 3.634568 TCCGCGTCATTTTTGTGAAAT 57.365 38.095 4.92 0.00 0.00 2.17
937 11460 3.109619 GTTTCCGCGTCATTTTTGTGAA 58.890 40.909 4.92 0.00 0.00 3.18
938 11461 2.356382 AGTTTCCGCGTCATTTTTGTGA 59.644 40.909 4.92 0.00 0.00 3.58
961 11512 3.343421 GTGTCACCAACGACGCCC 61.343 66.667 0.00 0.00 39.91 6.13
1142 11725 6.915300 CGAGTGACTATTCATCGATCTTCTTT 59.085 38.462 0.00 0.00 36.06 2.52
1143 11726 6.261158 TCGAGTGACTATTCATCGATCTTCTT 59.739 38.462 0.00 0.00 37.11 2.52
1144 11727 5.760743 TCGAGTGACTATTCATCGATCTTCT 59.239 40.000 0.00 0.00 37.11 2.85
1145 11728 5.991568 TCGAGTGACTATTCATCGATCTTC 58.008 41.667 0.00 0.00 37.11 2.87
1422 15341 1.298863 CGACGCGTACATCCCGAAT 60.299 57.895 13.97 0.00 0.00 3.34
1627 15568 7.512130 TGTATGTGATCTAGAAGAATGCCAAT 58.488 34.615 0.00 0.00 0.00 3.16
1657 15601 6.406370 TGTGATCGACCAATGAATTAAGTCT 58.594 36.000 4.35 0.00 0.00 3.24
1751 15695 5.187186 ACAAGACGCCTCTCCTAAAGATAAA 59.813 40.000 0.00 0.00 32.19 1.40
1775 15719 4.640771 ATTGAGTACAAGGCTTGAAGGA 57.359 40.909 32.50 12.27 39.46 3.36
1779 15723 8.297426 CGAGTATATATTGAGTACAAGGCTTGA 58.703 37.037 32.50 14.02 39.46 3.02
1833 15779 2.308866 GGAAAGAGAGGATTGGTGGGAA 59.691 50.000 0.00 0.00 0.00 3.97
1835 15781 1.064389 GGGAAAGAGAGGATTGGTGGG 60.064 57.143 0.00 0.00 0.00 4.61
1851 15799 6.295123 GCGATAGATACCATGTTAGAAGGGAA 60.295 42.308 0.00 0.00 39.76 3.97
2019 15967 0.771755 AGGGCTCGGGAAAAAGACTT 59.228 50.000 0.00 0.00 0.00 3.01
2082 16033 6.398918 TGATCGGAAACCAAAAAGAAAAACA 58.601 32.000 0.00 0.00 0.00 2.83
2100 16051 2.885644 CGCGGTGGTCTTGATCGG 60.886 66.667 0.00 0.00 0.00 4.18
2102 16053 1.810030 GGTCGCGGTGGTCTTGATC 60.810 63.158 6.13 0.00 0.00 2.92
2103 16054 2.264794 GGTCGCGGTGGTCTTGAT 59.735 61.111 6.13 0.00 0.00 2.57
2104 16055 3.998672 GGGTCGCGGTGGTCTTGA 61.999 66.667 6.13 0.00 0.00 3.02
2250 16242 3.385384 TCTGAGCAGGGCGGTGAG 61.385 66.667 0.00 0.00 0.00 3.51
2265 16257 2.982130 GATGCAGGTGTCCCGTCT 59.018 61.111 0.00 0.00 35.12 4.18
2375 16379 1.737816 GGCCGCCGTATAGACAAGA 59.262 57.895 0.00 0.00 0.00 3.02
2377 16381 2.816718 GGGCCGCCGTATAGACAA 59.183 61.111 2.55 0.00 0.00 3.18
2378 16382 3.598715 CGGGCCGCCGTATAGACA 61.599 66.667 15.42 0.00 0.00 3.41
2432 16450 1.446966 GAGTTGAGGCAGCCGTCTC 60.447 63.158 5.55 8.89 44.63 3.36
2435 16453 4.379243 CCGAGTTGAGGCAGCCGT 62.379 66.667 5.55 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.