Multiple sequence alignment - TraesCS7D01G506500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G506500 chr7D 100.000 2120 0 0 1 2120 611293578 611295697 0.000000e+00 3916.0
1 TraesCS7D01G506500 chr7D 87.821 156 19 0 972 1127 611331805 611331960 1.290000e-42 183.0
2 TraesCS7D01G506500 chr7D 84.343 198 8 12 515 696 611330798 611330988 2.800000e-39 172.0
3 TraesCS7D01G506500 chr7D 89.855 69 7 0 191 259 611325474 611325542 2.900000e-14 89.8
4 TraesCS7D01G506500 chr7B 83.509 758 65 32 763 1471 700439754 700440500 0.000000e+00 652.0
5 TraesCS7D01G506500 chr7B 90.093 323 13 9 449 755 700439383 700439702 3.280000e-108 401.0
6 TraesCS7D01G506500 chr7B 81.658 398 44 16 1713 2088 700440607 700440997 9.510000e-79 303.0
7 TraesCS7D01G506500 chr7B 77.533 454 54 18 873 1299 700551328 700551760 1.640000e-56 230.0
8 TraesCS7D01G506500 chr7B 83.152 184 13 10 528 696 700550974 700551154 3.640000e-33 152.0
9 TraesCS7D01G506500 chr7B 92.857 98 6 1 1 98 700439292 700439388 7.890000e-30 141.0
10 TraesCS7D01G506500 chr7A 81.123 641 55 32 751 1378 701360419 701361006 8.920000e-124 453.0
11 TraesCS7D01G506500 chr7A 89.308 318 4 15 443 733 701360034 701360348 2.570000e-99 372.0
12 TraesCS7D01G506500 chr7A 89.606 279 21 4 45 316 701359059 701359336 4.330000e-92 348.0
13 TraesCS7D01G506500 chr7A 78.759 419 41 21 907 1291 701391257 701391661 9.780000e-59 237.0
14 TraesCS7D01G506500 chr7A 82.222 180 11 13 534 696 701390874 701391049 3.670000e-28 135.0
15 TraesCS7D01G506500 chr5B 90.698 215 20 0 1474 1688 658367725 658367939 9.570000e-74 287.0
16 TraesCS7D01G506500 chr5D 89.767 215 22 0 1474 1688 440804615 440804829 2.070000e-70 276.0
17 TraesCS7D01G506500 chr4A 89.302 215 23 0 1474 1688 736531247 736531461 9.640000e-69 270.0
18 TraesCS7D01G506500 chr4A 89.302 215 22 1 1474 1688 621294786 621294999 3.470000e-68 268.0
19 TraesCS7D01G506500 chr2B 89.302 215 23 0 1474 1688 410436135 410436349 9.640000e-69 270.0
20 TraesCS7D01G506500 chr2D 88.889 216 23 1 1474 1689 42874819 42874605 4.490000e-67 265.0
21 TraesCS7D01G506500 chr2D 86.977 215 28 0 1474 1688 536935914 536936128 2.100000e-60 243.0
22 TraesCS7D01G506500 chr3B 87.442 215 26 1 1474 1688 823595247 823595460 1.620000e-61 246.0
23 TraesCS7D01G506500 chr3D 85.915 213 29 1 1476 1688 136776672 136776883 2.120000e-55 226.0
24 TraesCS7D01G506500 chr1D 92.727 55 2 2 1054 1106 452762517 452762463 6.270000e-11 78.7
25 TraesCS7D01G506500 chr1D 92.727 55 2 2 1054 1106 452858223 452858169 6.270000e-11 78.7
26 TraesCS7D01G506500 chr1B 92.727 55 2 2 1054 1106 623224817 623224763 6.270000e-11 78.7
27 TraesCS7D01G506500 chr1A 90.909 55 3 2 1054 1106 547591994 547591940 2.920000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G506500 chr7D 611293578 611295697 2119 False 3916.00 3916 100.00000 1 2120 1 chr7D.!!$F1 2119
1 TraesCS7D01G506500 chr7B 700439292 700440997 1705 False 374.25 652 87.02925 1 2088 4 chr7B.!!$F1 2087
2 TraesCS7D01G506500 chr7A 701359059 701361006 1947 False 391.00 453 86.67900 45 1378 3 chr7A.!!$F1 1333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 1526 0.035152 TGACCCATCATCACCACTGC 60.035 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2535 0.032515 TATGGGAGAGGAGAACGCCA 60.033 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.381908 CCTCGTTAACATCTGCTACCTCT 59.618 47.826 6.39 0.00 0.00 3.69
43 44 9.043079 GTTAACATCTGCTACCTCTAATAAACC 57.957 37.037 0.00 0.00 0.00 3.27
93 94 5.338614 AGGAAAATGACAAAACGACTACG 57.661 39.130 0.00 0.00 45.75 3.51
157 158 2.476619 CGACTTGTCTTCACGAAAGCAT 59.523 45.455 0.00 0.00 34.76 3.79
211 215 5.823045 TCTGATCTCACTAGTCGCTAATGAA 59.177 40.000 0.00 0.00 0.00 2.57
224 228 3.310774 CGCTAATGAAATCCTGGTGTCTG 59.689 47.826 0.00 0.00 0.00 3.51
225 229 4.517285 GCTAATGAAATCCTGGTGTCTGA 58.483 43.478 0.00 0.00 0.00 3.27
230 234 7.396540 AATGAAATCCTGGTGTCTGATTAAC 57.603 36.000 0.00 0.00 0.00 2.01
235 239 3.392947 TCCTGGTGTCTGATTAACCAACA 59.607 43.478 9.98 0.00 43.21 3.33
245 249 6.200854 GTCTGATTAACCAACAAAAGCCTTTG 59.799 38.462 6.24 6.24 46.26 2.77
258 262 0.538287 GCCTTTGTCAAGCCTCAGGT 60.538 55.000 0.00 0.00 0.00 4.00
288 296 0.315382 CTGCGCGCTAAAAAGATCCG 60.315 55.000 33.29 0.00 0.00 4.18
290 298 1.426041 GCGCGCTAAAAAGATCCGGA 61.426 55.000 26.67 6.61 0.00 5.14
291 299 0.300789 CGCGCTAAAAAGATCCGGAC 59.699 55.000 6.12 0.11 0.00 4.79
297 305 4.510571 GCTAAAAAGATCCGGACACCTTA 58.489 43.478 6.12 0.32 0.00 2.69
299 307 5.413523 GCTAAAAAGATCCGGACACCTTAAA 59.586 40.000 6.12 0.00 0.00 1.52
300 308 6.072342 GCTAAAAAGATCCGGACACCTTAAAA 60.072 38.462 6.12 0.00 0.00 1.52
306 314 2.619646 TCCGGACACCTTAAAAGCAAAC 59.380 45.455 0.00 0.00 0.00 2.93
348 884 2.672874 TGAAATGAGTATCTGCACGCAC 59.327 45.455 0.00 0.00 34.92 5.34
359 895 2.032117 TCTGCACGCACTGTAAACATTG 60.032 45.455 0.00 0.00 0.00 2.82
360 896 1.673400 TGCACGCACTGTAAACATTGT 59.327 42.857 2.91 0.00 0.00 2.71
370 906 2.105134 TGTAAACATTGTCCACTCCGGT 59.895 45.455 0.00 0.00 35.57 5.28
371 907 3.324268 TGTAAACATTGTCCACTCCGGTA 59.676 43.478 0.00 0.00 35.57 4.02
372 908 2.467566 AACATTGTCCACTCCGGTAC 57.532 50.000 0.00 0.00 35.57 3.34
388 927 2.989881 TACGCTGTGCTGGACTCGG 61.990 63.158 15.47 2.24 0.00 4.63
398 937 2.997897 GGACTCGGCCAGTGGAGT 60.998 66.667 15.20 10.43 45.71 3.85
399 938 1.681327 GGACTCGGCCAGTGGAGTA 60.681 63.158 15.20 0.00 43.23 2.59
400 939 1.668101 GGACTCGGCCAGTGGAGTAG 61.668 65.000 15.20 8.43 43.23 2.57
401 940 2.286127 GACTCGGCCAGTGGAGTAGC 62.286 65.000 15.20 0.00 43.23 3.58
402 941 2.283604 TCGGCCAGTGGAGTAGCA 60.284 61.111 15.20 0.00 0.00 3.49
415 954 4.577283 GTGGAGTAGCACCAAACAGTAAAA 59.423 41.667 0.00 0.00 39.22 1.52
420 959 7.027778 AGTAGCACCAAACAGTAAAAAGAAG 57.972 36.000 0.00 0.00 0.00 2.85
425 964 4.404394 ACCAAACAGTAAAAAGAAGGGTGG 59.596 41.667 0.00 0.00 0.00 4.61
486 1066 1.700186 GGGAACAAAGACAGAGGAGGT 59.300 52.381 0.00 0.00 0.00 3.85
596 1198 1.873270 GACACATTTTCCACCGGGGC 61.873 60.000 6.32 0.00 36.21 5.80
600 1202 3.600410 ATTTTCCACCGGGGCCAGG 62.600 63.158 22.02 22.02 36.21 4.45
751 1366 0.943673 CACGCCCGCATCATCAATTA 59.056 50.000 0.00 0.00 0.00 1.40
755 1370 2.413112 CGCCCGCATCATCAATTACTAG 59.587 50.000 0.00 0.00 0.00 2.57
804 1471 0.485099 GGATCTAGCTCCCTCCTCCA 59.515 60.000 0.75 0.00 0.00 3.86
809 1476 2.037304 TAGCTCCCTCCTCCATCCCC 62.037 65.000 0.00 0.00 0.00 4.81
820 1487 3.967326 TCCTCCATCCCCATATATAAGCG 59.033 47.826 0.00 0.00 0.00 4.68
821 1488 3.967326 CCTCCATCCCCATATATAAGCGA 59.033 47.826 0.00 0.00 0.00 4.93
822 1489 4.039730 CCTCCATCCCCATATATAAGCGAG 59.960 50.000 0.00 0.00 0.00 5.03
824 1491 3.134623 CCATCCCCATATATAAGCGAGCA 59.865 47.826 0.00 0.00 0.00 4.26
826 1493 3.169908 TCCCCATATATAAGCGAGCACA 58.830 45.455 0.00 0.00 0.00 4.57
828 1495 3.262420 CCCATATATAAGCGAGCACACC 58.738 50.000 0.00 0.00 0.00 4.16
829 1496 3.262420 CCATATATAAGCGAGCACACCC 58.738 50.000 0.00 0.00 0.00 4.61
843 1510 4.309950 ACCCGTTGGAGCCGTGAC 62.310 66.667 0.00 0.00 34.81 3.67
850 1517 1.561769 TTGGAGCCGTGACCCATCAT 61.562 55.000 0.00 0.00 37.14 2.45
854 1521 1.819632 GCCGTGACCCATCATCACC 60.820 63.158 0.00 0.00 42.97 4.02
855 1522 1.601703 CCGTGACCCATCATCACCA 59.398 57.895 0.00 0.00 42.97 4.17
857 1524 0.250234 CGTGACCCATCATCACCACT 59.750 55.000 0.00 0.00 42.97 4.00
858 1525 1.742761 GTGACCCATCATCACCACTG 58.257 55.000 0.00 0.00 40.56 3.66
859 1526 0.035152 TGACCCATCATCACCACTGC 60.035 55.000 0.00 0.00 0.00 4.40
864 1534 2.357050 CCCATCATCACCACTGCCTTTA 60.357 50.000 0.00 0.00 0.00 1.85
883 1553 4.640789 TTAGCCGAGAAGAAGAGATCAC 57.359 45.455 0.00 0.00 0.00 3.06
918 1588 4.065088 GAGCTCACCATTCAACAACACTA 58.935 43.478 9.40 0.00 0.00 2.74
965 1635 2.721971 GATCATCCATCGCCACGCCT 62.722 60.000 0.00 0.00 0.00 5.52
967 1637 4.592192 ATCCATCGCCACGCCTCG 62.592 66.667 0.00 0.00 0.00 4.63
1022 1697 0.983378 AAGCTTACCGGGAGCCAGAT 60.983 55.000 23.50 7.02 41.03 2.90
1107 1782 3.558411 GTCGTCATGCTCCTGCGC 61.558 66.667 0.00 0.00 43.34 6.09
1128 1803 2.276116 GCACGACTGACTCCCTCCA 61.276 63.158 0.00 0.00 0.00 3.86
1146 1825 1.668419 CATCCTTCCGTTCCATGGAC 58.332 55.000 15.91 9.07 31.86 4.02
1159 1838 0.240945 CATGGACGGTGTTTGAAGCC 59.759 55.000 0.00 0.00 0.00 4.35
1207 1888 1.089920 GATTTGATCGTGCTGTGCCT 58.910 50.000 0.00 0.00 0.00 4.75
1239 1926 2.793946 GGCGCAGGTTGCACATAG 59.206 61.111 10.83 0.00 45.36 2.23
1303 1990 5.594926 CAAAGCAAAGCAATAGGATTAGGG 58.405 41.667 0.00 0.00 0.00 3.53
1318 2009 5.070047 AGGATTAGGGTATAGTGTTCGTTGG 59.930 44.000 0.00 0.00 0.00 3.77
1325 2025 4.992951 GGTATAGTGTTCGTTGGTTCAGTT 59.007 41.667 0.00 0.00 0.00 3.16
1367 2070 5.122519 TGTACTGTTCTTGCATCACTGAAA 58.877 37.500 0.00 0.00 0.00 2.69
1378 2081 7.828717 TCTTGCATCACTGAAAAATATACTGGA 59.171 33.333 0.00 0.00 0.00 3.86
1380 2083 8.523915 TGCATCACTGAAAAATATACTGGAAT 57.476 30.769 0.00 0.00 0.00 3.01
1381 2084 8.407832 TGCATCACTGAAAAATATACTGGAATG 58.592 33.333 0.00 0.00 0.00 2.67
1383 2086 7.936496 TCACTGAAAAATATACTGGAATGCA 57.064 32.000 0.00 0.00 0.00 3.96
1384 2087 8.347004 TCACTGAAAAATATACTGGAATGCAA 57.653 30.769 0.00 0.00 0.00 4.08
1387 2090 8.246180 ACTGAAAAATATACTGGAATGCAACAG 58.754 33.333 13.01 13.01 40.48 3.16
1407 2110 3.743567 GCATCAGCTGAAAGAGAAGTG 57.256 47.619 22.50 12.77 37.91 3.16
1409 2112 3.940221 GCATCAGCTGAAAGAGAAGTGAT 59.060 43.478 22.50 0.00 37.91 3.06
1410 2113 4.034279 GCATCAGCTGAAAGAGAAGTGATC 59.966 45.833 22.50 0.00 37.91 2.92
1487 2199 2.800881 CTGTTCCCAGTTCTTTTGCC 57.199 50.000 0.00 0.00 33.80 4.52
1490 2202 2.306847 GTTCCCAGTTCTTTTGCCAGA 58.693 47.619 0.00 0.00 0.00 3.86
1491 2203 2.693074 GTTCCCAGTTCTTTTGCCAGAA 59.307 45.455 0.00 0.00 0.00 3.02
1494 2206 4.934356 TCCCAGTTCTTTTGCCAGAATAT 58.066 39.130 0.00 0.00 35.23 1.28
1495 2207 4.706476 TCCCAGTTCTTTTGCCAGAATATG 59.294 41.667 0.00 0.00 35.23 1.78
1496 2208 4.706476 CCCAGTTCTTTTGCCAGAATATGA 59.294 41.667 0.00 0.00 35.23 2.15
1498 2210 5.649395 CCAGTTCTTTTGCCAGAATATGAGA 59.351 40.000 0.00 0.00 35.23 3.27
1499 2211 6.151648 CCAGTTCTTTTGCCAGAATATGAGAA 59.848 38.462 0.00 0.00 35.23 2.87
1500 2212 7.147949 CCAGTTCTTTTGCCAGAATATGAGAAT 60.148 37.037 0.00 0.00 35.23 2.40
1501 2213 8.248945 CAGTTCTTTTGCCAGAATATGAGAATT 58.751 33.333 0.00 0.00 35.23 2.17
1503 2215 8.465201 GTTCTTTTGCCAGAATATGAGAATTCT 58.535 33.333 7.95 7.95 45.07 2.40
1507 2219 6.005066 TGCCAGAATATGAGAATTCTTCCA 57.995 37.500 9.87 4.28 42.28 3.53
1508 2220 6.060136 TGCCAGAATATGAGAATTCTTCCAG 58.940 40.000 9.87 0.00 42.28 3.86
1509 2221 6.126681 TGCCAGAATATGAGAATTCTTCCAGA 60.127 38.462 9.87 1.55 42.28 3.86
1510 2222 6.769822 GCCAGAATATGAGAATTCTTCCAGAA 59.230 38.462 9.87 0.00 42.28 3.02
1511 2223 7.447853 GCCAGAATATGAGAATTCTTCCAGAAT 59.552 37.037 9.87 0.00 46.22 2.40
1512 2224 9.001542 CCAGAATATGAGAATTCTTCCAGAATC 57.998 37.037 9.87 4.31 43.67 2.52
1513 2225 9.001542 CAGAATATGAGAATTCTTCCAGAATCC 57.998 37.037 9.87 0.00 43.67 3.01
1516 2228 4.759782 TGAGAATTCTTCCAGAATCCGAC 58.240 43.478 9.87 0.00 43.67 4.79
1517 2229 4.123506 GAGAATTCTTCCAGAATCCGACC 58.876 47.826 9.87 0.00 43.67 4.79
1519 2231 0.909623 TTCTTCCAGAATCCGACCCC 59.090 55.000 0.00 0.00 0.00 4.95
1520 2232 0.042731 TCTTCCAGAATCCGACCCCT 59.957 55.000 0.00 0.00 0.00 4.79
1521 2233 1.289830 TCTTCCAGAATCCGACCCCTA 59.710 52.381 0.00 0.00 0.00 3.53
1522 2234 2.116238 CTTCCAGAATCCGACCCCTAA 58.884 52.381 0.00 0.00 0.00 2.69
1525 2237 1.200519 CAGAATCCGACCCCTAACCA 58.799 55.000 0.00 0.00 0.00 3.67
1527 2239 0.179054 GAATCCGACCCCTAACCAGC 60.179 60.000 0.00 0.00 0.00 4.85
1528 2240 0.620700 AATCCGACCCCTAACCAGCT 60.621 55.000 0.00 0.00 0.00 4.24
1529 2241 0.620700 ATCCGACCCCTAACCAGCTT 60.621 55.000 0.00 0.00 0.00 3.74
1530 2242 1.221021 CCGACCCCTAACCAGCTTC 59.779 63.158 0.00 0.00 0.00 3.86
1531 2243 1.265454 CCGACCCCTAACCAGCTTCT 61.265 60.000 0.00 0.00 0.00 2.85
1532 2244 0.613777 CGACCCCTAACCAGCTTCTT 59.386 55.000 0.00 0.00 0.00 2.52
1534 2246 1.909986 GACCCCTAACCAGCTTCTTCT 59.090 52.381 0.00 0.00 0.00 2.85
1535 2247 3.105283 GACCCCTAACCAGCTTCTTCTA 58.895 50.000 0.00 0.00 0.00 2.10
1536 2248 3.108376 ACCCCTAACCAGCTTCTTCTAG 58.892 50.000 0.00 0.00 0.00 2.43
1537 2249 3.246021 ACCCCTAACCAGCTTCTTCTAGA 60.246 47.826 0.00 0.00 0.00 2.43
1538 2250 3.775316 CCCCTAACCAGCTTCTTCTAGAA 59.225 47.826 4.81 4.81 32.50 2.10
1539 2251 4.410555 CCCCTAACCAGCTTCTTCTAGAAT 59.589 45.833 5.44 0.00 33.13 2.40
1540 2252 5.454045 CCCCTAACCAGCTTCTTCTAGAATC 60.454 48.000 5.44 0.00 33.13 2.52
1541 2253 5.365314 CCCTAACCAGCTTCTTCTAGAATCT 59.635 44.000 5.44 0.00 33.13 2.40
1542 2254 6.126911 CCCTAACCAGCTTCTTCTAGAATCTT 60.127 42.308 5.44 0.00 33.13 2.40
1543 2255 7.334858 CCTAACCAGCTTCTTCTAGAATCTTT 58.665 38.462 5.44 0.00 33.13 2.52
1544 2256 7.279758 CCTAACCAGCTTCTTCTAGAATCTTTG 59.720 40.741 5.44 1.99 33.13 2.77
1545 2257 6.365970 ACCAGCTTCTTCTAGAATCTTTGA 57.634 37.500 5.44 0.00 33.13 2.69
1546 2258 6.405538 ACCAGCTTCTTCTAGAATCTTTGAG 58.594 40.000 5.44 0.00 33.13 3.02
1547 2259 5.294060 CCAGCTTCTTCTAGAATCTTTGAGC 59.706 44.000 5.44 9.12 33.13 4.26
1548 2260 5.294060 CAGCTTCTTCTAGAATCTTTGAGCC 59.706 44.000 5.44 0.00 33.13 4.70
1549 2261 5.189539 AGCTTCTTCTAGAATCTTTGAGCCT 59.810 40.000 5.44 0.00 33.13 4.58
1550 2262 5.523552 GCTTCTTCTAGAATCTTTGAGCCTC 59.476 44.000 5.44 0.00 33.13 4.70
1551 2263 6.611613 TTCTTCTAGAATCTTTGAGCCTCA 57.388 37.500 5.44 0.00 0.00 3.86
1552 2264 6.805016 TCTTCTAGAATCTTTGAGCCTCAT 57.195 37.500 5.44 0.00 0.00 2.90
1553 2265 7.192852 TCTTCTAGAATCTTTGAGCCTCATT 57.807 36.000 5.44 0.00 0.00 2.57
1554 2266 7.628234 TCTTCTAGAATCTTTGAGCCTCATTT 58.372 34.615 5.44 0.00 0.00 2.32
1555 2267 7.551974 TCTTCTAGAATCTTTGAGCCTCATTTG 59.448 37.037 5.44 0.00 0.00 2.32
1556 2268 6.715280 TCTAGAATCTTTGAGCCTCATTTGT 58.285 36.000 0.00 0.00 0.00 2.83
1557 2269 7.170965 TCTAGAATCTTTGAGCCTCATTTGTT 58.829 34.615 0.00 0.00 0.00 2.83
1558 2270 6.661304 AGAATCTTTGAGCCTCATTTGTTT 57.339 33.333 0.00 0.00 0.00 2.83
1559 2271 6.685657 AGAATCTTTGAGCCTCATTTGTTTC 58.314 36.000 0.00 0.93 0.00 2.78
1560 2272 6.266103 AGAATCTTTGAGCCTCATTTGTTTCA 59.734 34.615 0.00 0.00 0.00 2.69
1561 2273 5.186996 TCTTTGAGCCTCATTTGTTTCAC 57.813 39.130 0.00 0.00 0.00 3.18
1562 2274 4.644234 TCTTTGAGCCTCATTTGTTTCACA 59.356 37.500 0.00 0.00 0.00 3.58
1563 2275 4.998671 TTGAGCCTCATTTGTTTCACAA 57.001 36.364 0.00 0.00 36.11 3.33
1564 2276 5.534207 TTGAGCCTCATTTGTTTCACAAT 57.466 34.783 0.00 0.00 38.00 2.71
1565 2277 5.125100 TGAGCCTCATTTGTTTCACAATC 57.875 39.130 0.00 0.00 38.00 2.67
1566 2278 4.022068 TGAGCCTCATTTGTTTCACAATCC 60.022 41.667 0.00 0.00 38.00 3.01
1567 2279 4.154942 AGCCTCATTTGTTTCACAATCCT 58.845 39.130 0.00 0.00 38.00 3.24
1568 2280 4.021719 AGCCTCATTTGTTTCACAATCCTG 60.022 41.667 0.00 0.00 38.00 3.86
1569 2281 4.262164 GCCTCATTTGTTTCACAATCCTGT 60.262 41.667 0.00 0.00 38.00 4.00
1570 2282 5.464168 CCTCATTTGTTTCACAATCCTGTC 58.536 41.667 0.00 0.00 38.00 3.51
1571 2283 5.242393 CCTCATTTGTTTCACAATCCTGTCT 59.758 40.000 0.00 0.00 38.00 3.41
1572 2284 6.430925 CCTCATTTGTTTCACAATCCTGTCTA 59.569 38.462 0.00 0.00 38.00 2.59
1573 2285 7.040478 CCTCATTTGTTTCACAATCCTGTCTAA 60.040 37.037 0.00 0.00 38.00 2.10
1574 2286 8.408043 TCATTTGTTTCACAATCCTGTCTAAT 57.592 30.769 0.00 0.00 38.00 1.73
1575 2287 8.859090 TCATTTGTTTCACAATCCTGTCTAATT 58.141 29.630 0.00 0.00 38.00 1.40
1578 2290 9.567776 TTTGTTTCACAATCCTGTCTAATTAGA 57.432 29.630 11.24 11.24 38.00 2.10
1579 2291 8.999431 TTGTTTCACAATCCTGTCTAATTAGAC 58.001 33.333 30.61 30.61 41.84 2.59
1613 2325 9.700831 AGATAGGATTGTAAAACAAATAAGGCT 57.299 29.630 0.00 0.00 41.96 4.58
1614 2326 9.952188 GATAGGATTGTAAAACAAATAAGGCTC 57.048 33.333 0.00 0.00 41.96 4.70
1615 2327 7.775053 AGGATTGTAAAACAAATAAGGCTCA 57.225 32.000 0.00 0.00 41.96 4.26
1616 2328 8.189119 AGGATTGTAAAACAAATAAGGCTCAA 57.811 30.769 0.00 0.00 41.96 3.02
1617 2329 8.646900 AGGATTGTAAAACAAATAAGGCTCAAA 58.353 29.630 0.00 0.00 41.96 2.69
1618 2330 8.925700 GGATTGTAAAACAAATAAGGCTCAAAG 58.074 33.333 0.00 0.00 41.96 2.77
1619 2331 9.691362 GATTGTAAAACAAATAAGGCTCAAAGA 57.309 29.630 0.00 0.00 41.96 2.52
1622 2334 9.691362 TGTAAAACAAATAAGGCTCAAAGATTC 57.309 29.630 0.00 0.00 0.00 2.52
1623 2335 9.914131 GTAAAACAAATAAGGCTCAAAGATTCT 57.086 29.630 0.00 0.00 0.00 2.40
1624 2336 8.822652 AAAACAAATAAGGCTCAAAGATTCTG 57.177 30.769 0.00 0.00 0.00 3.02
1625 2337 6.521151 ACAAATAAGGCTCAAAGATTCTGG 57.479 37.500 0.00 0.00 0.00 3.86
1626 2338 5.420104 ACAAATAAGGCTCAAAGATTCTGGG 59.580 40.000 0.00 0.00 0.00 4.45
1627 2339 5.456921 AATAAGGCTCAAAGATTCTGGGA 57.543 39.130 0.00 0.00 0.00 4.37
1628 2340 3.814504 AAGGCTCAAAGATTCTGGGAA 57.185 42.857 0.00 0.00 0.00 3.97
1629 2341 3.814504 AGGCTCAAAGATTCTGGGAAA 57.185 42.857 0.00 0.00 0.00 3.13
1630 2342 4.118168 AGGCTCAAAGATTCTGGGAAAA 57.882 40.909 0.00 0.00 0.00 2.29
1631 2343 4.085009 AGGCTCAAAGATTCTGGGAAAAG 58.915 43.478 0.00 0.00 0.00 2.27
1632 2344 3.367806 GGCTCAAAGATTCTGGGAAAAGC 60.368 47.826 0.00 0.00 0.00 3.51
1633 2345 3.509184 GCTCAAAGATTCTGGGAAAAGCT 59.491 43.478 0.00 0.00 0.00 3.74
1634 2346 4.617762 GCTCAAAGATTCTGGGAAAAGCTG 60.618 45.833 0.00 0.00 0.00 4.24
1635 2347 4.728772 TCAAAGATTCTGGGAAAAGCTGA 58.271 39.130 0.00 0.00 0.00 4.26
1636 2348 4.763793 TCAAAGATTCTGGGAAAAGCTGAG 59.236 41.667 0.00 0.00 0.00 3.35
1637 2349 4.379302 AAGATTCTGGGAAAAGCTGAGT 57.621 40.909 0.00 0.00 0.00 3.41
1638 2350 5.505181 AAGATTCTGGGAAAAGCTGAGTA 57.495 39.130 0.00 0.00 0.00 2.59
1639 2351 5.096443 AGATTCTGGGAAAAGCTGAGTAG 57.904 43.478 0.00 0.00 0.00 2.57
1640 2352 3.703001 TTCTGGGAAAAGCTGAGTAGG 57.297 47.619 0.00 0.00 0.00 3.18
1641 2353 1.909302 TCTGGGAAAAGCTGAGTAGGG 59.091 52.381 0.00 0.00 0.00 3.53
1642 2354 0.991920 TGGGAAAAGCTGAGTAGGGG 59.008 55.000 0.00 0.00 0.00 4.79
1643 2355 0.992695 GGGAAAAGCTGAGTAGGGGT 59.007 55.000 0.00 0.00 0.00 4.95
1644 2356 1.354705 GGGAAAAGCTGAGTAGGGGTT 59.645 52.381 0.00 0.00 0.00 4.11
1645 2357 2.437413 GGAAAAGCTGAGTAGGGGTTG 58.563 52.381 0.00 0.00 0.00 3.77
1646 2358 2.437413 GAAAAGCTGAGTAGGGGTTGG 58.563 52.381 0.00 0.00 0.00 3.77
1647 2359 1.742308 AAAGCTGAGTAGGGGTTGGA 58.258 50.000 0.00 0.00 0.00 3.53
1648 2360 1.972588 AAGCTGAGTAGGGGTTGGAT 58.027 50.000 0.00 0.00 0.00 3.41
1649 2361 1.972588 AGCTGAGTAGGGGTTGGATT 58.027 50.000 0.00 0.00 0.00 3.01
1650 2362 1.840635 AGCTGAGTAGGGGTTGGATTC 59.159 52.381 0.00 0.00 0.00 2.52
1651 2363 1.840635 GCTGAGTAGGGGTTGGATTCT 59.159 52.381 0.00 0.00 0.00 2.40
1652 2364 2.420687 GCTGAGTAGGGGTTGGATTCTG 60.421 54.545 0.00 0.00 0.00 3.02
1653 2365 2.171448 CTGAGTAGGGGTTGGATTCTGG 59.829 54.545 0.00 0.00 0.00 3.86
1654 2366 1.490910 GAGTAGGGGTTGGATTCTGGG 59.509 57.143 0.00 0.00 0.00 4.45
1655 2367 1.082194 AGTAGGGGTTGGATTCTGGGA 59.918 52.381 0.00 0.00 0.00 4.37
1656 2368 1.920351 GTAGGGGTTGGATTCTGGGAA 59.080 52.381 0.00 0.00 0.00 3.97
1657 2369 1.466858 AGGGGTTGGATTCTGGGAAA 58.533 50.000 0.00 0.00 0.00 3.13
1658 2370 1.792651 AGGGGTTGGATTCTGGGAAAA 59.207 47.619 0.00 0.00 0.00 2.29
1659 2371 2.386811 AGGGGTTGGATTCTGGGAAAAT 59.613 45.455 0.00 0.00 0.00 1.82
1660 2372 2.766263 GGGGTTGGATTCTGGGAAAATC 59.234 50.000 0.00 0.00 33.29 2.17
1661 2373 2.427095 GGGTTGGATTCTGGGAAAATCG 59.573 50.000 0.00 0.00 34.58 3.34
1662 2374 3.089284 GGTTGGATTCTGGGAAAATCGT 58.911 45.455 0.00 0.00 34.58 3.73
1663 2375 3.128764 GGTTGGATTCTGGGAAAATCGTC 59.871 47.826 0.00 0.00 34.58 4.20
1664 2376 4.010349 GTTGGATTCTGGGAAAATCGTCT 58.990 43.478 0.00 0.00 34.58 4.18
1665 2377 3.609853 TGGATTCTGGGAAAATCGTCTG 58.390 45.455 0.00 0.00 34.58 3.51
1666 2378 3.263170 TGGATTCTGGGAAAATCGTCTGA 59.737 43.478 0.00 0.00 34.58 3.27
1667 2379 4.080356 TGGATTCTGGGAAAATCGTCTGAT 60.080 41.667 0.00 0.00 34.58 2.90
1668 2380 4.884164 GGATTCTGGGAAAATCGTCTGATT 59.116 41.667 0.00 0.00 46.75 2.57
1669 2381 5.008118 GGATTCTGGGAAAATCGTCTGATTC 59.992 44.000 0.00 0.00 44.02 2.52
1670 2382 4.826274 TCTGGGAAAATCGTCTGATTCT 57.174 40.909 0.00 0.00 44.02 2.40
1671 2383 4.507710 TCTGGGAAAATCGTCTGATTCTG 58.492 43.478 0.00 0.00 44.02 3.02
1672 2384 3.609853 TGGGAAAATCGTCTGATTCTGG 58.390 45.455 0.00 0.00 44.02 3.86
1673 2385 2.356069 GGGAAAATCGTCTGATTCTGGC 59.644 50.000 0.00 0.00 44.02 4.85
1674 2386 3.009723 GGAAAATCGTCTGATTCTGGCA 58.990 45.455 0.00 0.00 44.02 4.92
1675 2387 3.440173 GGAAAATCGTCTGATTCTGGCAA 59.560 43.478 0.00 0.00 44.02 4.52
1676 2388 4.082787 GGAAAATCGTCTGATTCTGGCAAA 60.083 41.667 0.00 0.00 44.02 3.68
1677 2389 5.452078 AAAATCGTCTGATTCTGGCAAAA 57.548 34.783 0.00 0.00 44.02 2.44
1678 2390 4.691860 AATCGTCTGATTCTGGCAAAAG 57.308 40.909 0.00 0.00 40.90 2.27
1679 2391 3.401033 TCGTCTGATTCTGGCAAAAGA 57.599 42.857 0.00 0.00 0.00 2.52
1680 2392 3.738982 TCGTCTGATTCTGGCAAAAGAA 58.261 40.909 0.00 0.00 40.36 2.52
1681 2393 3.498397 TCGTCTGATTCTGGCAAAAGAAC 59.502 43.478 0.00 0.00 38.95 3.01
1682 2394 3.499918 CGTCTGATTCTGGCAAAAGAACT 59.500 43.478 0.00 0.00 38.95 3.01
1683 2395 4.612259 CGTCTGATTCTGGCAAAAGAACTG 60.612 45.833 0.00 0.00 38.95 3.16
1684 2396 3.822735 TCTGATTCTGGCAAAAGAACTGG 59.177 43.478 0.00 0.00 38.95 4.00
1690 2402 2.931068 GCAAAAGAACTGGGCCGGG 61.931 63.158 18.49 6.00 0.00 5.73
1729 2456 2.291043 GGCCGGAGAGGAGAACCAA 61.291 63.158 5.05 0.00 45.00 3.67
1777 2504 2.659016 CAGCCAGCCTCGACTTCA 59.341 61.111 0.00 0.00 0.00 3.02
1778 2505 1.447489 CAGCCAGCCTCGACTTCAG 60.447 63.158 0.00 0.00 0.00 3.02
1779 2506 1.910772 AGCCAGCCTCGACTTCAGT 60.911 57.895 0.00 0.00 0.00 3.41
1781 2508 1.668294 CCAGCCTCGACTTCAGTGT 59.332 57.895 0.00 0.00 0.00 3.55
1785 2520 1.813786 AGCCTCGACTTCAGTGTCTAC 59.186 52.381 0.00 0.00 35.00 2.59
1816 2551 2.896443 CTGGCGTTCTCCTCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
1826 2574 2.603021 TCTCCTCTCCCATATGTCAGC 58.397 52.381 1.24 0.00 0.00 4.26
1835 2583 4.830765 TATGTCAGCGGGCGTGCC 62.831 66.667 1.16 1.16 34.65 5.01
1887 2635 2.202810 GCGAGCTAGCCACCAGAC 60.203 66.667 12.13 0.00 0.00 3.51
1953 2702 6.363577 AGTATATGCATTCCGTTGTCTTTG 57.636 37.500 3.54 0.00 0.00 2.77
1958 2707 4.109050 TGCATTCCGTTGTCTTTGAAAAC 58.891 39.130 0.00 0.00 0.00 2.43
1966 2715 5.275695 CCGTTGTCTTTGAAAACATTTCGTG 60.276 40.000 2.18 0.00 29.76 4.35
2016 2766 6.693315 AGAAAAGGTTCATCGACTCAAAAA 57.307 33.333 0.00 0.00 36.09 1.94
2060 2812 9.573133 ACTAAAAGTTTGTGTCTTGAAAGAATG 57.427 29.630 0.00 0.00 36.68 2.67
2063 2815 9.921637 AAAAGTTTGTGTCTTGAAAGAATGTTA 57.078 25.926 0.00 0.00 36.68 2.41
2094 2846 8.729805 TTTTAGGAAAATGTTCAAAGCATTGT 57.270 26.923 1.04 0.00 36.75 2.71
2095 2847 8.729805 TTTAGGAAAATGTTCAAAGCATTGTT 57.270 26.923 1.04 0.00 36.75 2.83
2096 2848 8.729805 TTAGGAAAATGTTCAAAGCATTGTTT 57.270 26.923 1.04 0.00 36.75 2.83
2097 2849 7.018635 AGGAAAATGTTCAAAGCATTGTTTG 57.981 32.000 1.04 0.00 36.75 2.93
2098 2850 6.038492 AGGAAAATGTTCAAAGCATTGTTTGG 59.962 34.615 1.04 0.00 37.89 3.28
2099 2851 5.754543 AAATGTTCAAAGCATTGTTTGGG 57.245 34.783 1.04 0.00 37.89 4.12
2100 2852 4.686191 ATGTTCAAAGCATTGTTTGGGA 57.314 36.364 1.04 0.05 37.89 4.37
2101 2853 4.478206 TGTTCAAAGCATTGTTTGGGAA 57.522 36.364 1.04 4.92 37.89 3.97
2102 2854 5.033589 TGTTCAAAGCATTGTTTGGGAAT 57.966 34.783 1.04 0.00 37.89 3.01
2103 2855 5.435291 TGTTCAAAGCATTGTTTGGGAATT 58.565 33.333 1.04 0.00 37.89 2.17
2104 2856 5.884792 TGTTCAAAGCATTGTTTGGGAATTT 59.115 32.000 1.04 0.00 37.89 1.82
2105 2857 6.038050 TGTTCAAAGCATTGTTTGGGAATTTC 59.962 34.615 1.04 0.00 37.89 2.17
2106 2858 5.678583 TCAAAGCATTGTTTGGGAATTTCA 58.321 33.333 1.04 0.00 37.89 2.69
2107 2859 6.297582 TCAAAGCATTGTTTGGGAATTTCAT 58.702 32.000 1.04 0.00 37.89 2.57
2108 2860 7.448420 TCAAAGCATTGTTTGGGAATTTCATA 58.552 30.769 1.04 0.00 37.89 2.15
2109 2861 7.935755 TCAAAGCATTGTTTGGGAATTTCATAA 59.064 29.630 1.04 0.00 37.89 1.90
2110 2862 8.566260 CAAAGCATTGTTTGGGAATTTCATAAA 58.434 29.630 0.00 0.00 34.34 1.40
2111 2863 8.688747 AAGCATTGTTTGGGAATTTCATAAAA 57.311 26.923 0.00 0.00 0.00 1.52
2112 2864 8.866970 AGCATTGTTTGGGAATTTCATAAAAT 57.133 26.923 0.00 0.00 36.64 1.82
2113 2865 9.299465 AGCATTGTTTGGGAATTTCATAAAATT 57.701 25.926 0.00 0.00 45.55 1.82
2114 2866 9.344309 GCATTGTTTGGGAATTTCATAAAATTG 57.656 29.630 0.00 0.72 43.48 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.489022 TCCATCGATTCTCTCTCGGTTTATTA 59.511 38.462 0.00 0.00 36.78 0.98
43 44 2.616376 ACAGTCCATCGATTCTCTCTCG 59.384 50.000 0.00 0.00 37.47 4.04
93 94 1.523938 GGGTGCTAATGGCCGACTC 60.524 63.158 0.00 0.00 40.92 3.36
157 158 6.988522 TCTATACGATAGCTTTATTGGCACA 58.011 36.000 0.00 0.00 42.67 4.57
211 215 4.927267 TGGTTAATCAGACACCAGGATT 57.073 40.909 0.00 0.00 35.57 3.01
245 249 3.426568 GCGCACCTGAGGCTTGAC 61.427 66.667 0.30 0.00 0.00 3.18
273 277 1.062148 GTGTCCGGATCTTTTTAGCGC 59.938 52.381 7.81 0.00 0.00 5.92
288 296 3.383505 ACCAGTTTGCTTTTAAGGTGTCC 59.616 43.478 0.00 0.00 0.00 4.02
290 298 3.430236 GCACCAGTTTGCTTTTAAGGTGT 60.430 43.478 10.03 0.00 45.08 4.16
291 299 3.123050 GCACCAGTTTGCTTTTAAGGTG 58.877 45.455 0.00 0.00 45.83 4.00
320 328 8.282592 GCGTGCAGATACTCATTTCATTTATAA 58.717 33.333 0.00 0.00 0.00 0.98
321 329 7.440856 TGCGTGCAGATACTCATTTCATTTATA 59.559 33.333 0.00 0.00 0.00 0.98
323 331 5.584251 TGCGTGCAGATACTCATTTCATTTA 59.416 36.000 0.00 0.00 0.00 1.40
324 332 4.395854 TGCGTGCAGATACTCATTTCATTT 59.604 37.500 0.00 0.00 0.00 2.32
332 347 0.603065 ACAGTGCGTGCAGATACTCA 59.397 50.000 0.00 0.00 0.00 3.41
342 357 2.289274 TGGACAATGTTTACAGTGCGTG 59.711 45.455 9.94 0.00 44.85 5.34
343 358 2.289547 GTGGACAATGTTTACAGTGCGT 59.710 45.455 9.94 0.00 44.85 5.24
344 359 2.548057 AGTGGACAATGTTTACAGTGCG 59.452 45.455 9.94 0.00 44.85 5.34
348 884 2.742053 CCGGAGTGGACAATGTTTACAG 59.258 50.000 0.00 0.00 42.00 2.74
359 895 2.181021 CAGCGTACCGGAGTGGAC 59.819 66.667 9.46 0.00 42.00 4.02
360 896 2.282674 ACAGCGTACCGGAGTGGA 60.283 61.111 9.46 0.00 42.00 4.02
370 906 2.566529 CGAGTCCAGCACAGCGTA 59.433 61.111 0.00 0.00 0.00 4.42
371 907 4.363990 CCGAGTCCAGCACAGCGT 62.364 66.667 0.00 0.00 0.00 5.07
388 927 0.250727 TTTGGTGCTACTCCACTGGC 60.251 55.000 0.00 0.00 36.03 4.85
390 929 2.146342 CTGTTTGGTGCTACTCCACTG 58.854 52.381 0.00 0.00 36.03 3.66
396 935 6.039382 CCTTCTTTTTACTGTTTGGTGCTACT 59.961 38.462 0.00 0.00 0.00 2.57
398 937 5.300792 CCCTTCTTTTTACTGTTTGGTGCTA 59.699 40.000 0.00 0.00 0.00 3.49
399 938 4.099419 CCCTTCTTTTTACTGTTTGGTGCT 59.901 41.667 0.00 0.00 0.00 4.40
400 939 4.142026 ACCCTTCTTTTTACTGTTTGGTGC 60.142 41.667 0.00 0.00 0.00 5.01
401 940 5.348164 CACCCTTCTTTTTACTGTTTGGTG 58.652 41.667 0.00 0.00 34.25 4.17
402 941 4.404394 CCACCCTTCTTTTTACTGTTTGGT 59.596 41.667 0.00 0.00 0.00 3.67
415 954 3.984732 GGGCCTGCCACCCTTCTT 61.985 66.667 10.86 0.00 44.68 2.52
433 972 3.736482 CTCGACTAGGACCGCGCAC 62.736 68.421 8.75 0.00 0.00 5.34
434 973 3.506096 CTCGACTAGGACCGCGCA 61.506 66.667 8.75 0.00 0.00 6.09
436 975 1.437772 ATGACTCGACTAGGACCGCG 61.438 60.000 0.00 0.00 0.00 6.46
437 976 0.029567 CATGACTCGACTAGGACCGC 59.970 60.000 0.00 0.00 0.00 5.68
438 977 1.664873 TCATGACTCGACTAGGACCG 58.335 55.000 0.00 0.00 0.00 4.79
441 980 2.753452 GTGGTTCATGACTCGACTAGGA 59.247 50.000 0.00 0.00 0.00 2.94
486 1066 0.608856 CAATGCAGTACAGGCCACCA 60.609 55.000 5.01 0.00 0.00 4.17
743 1358 6.095432 AGAGCCAGCTACTAGTAATTGATG 57.905 41.667 3.76 1.73 0.00 3.07
751 1366 2.232452 CACACAAGAGCCAGCTACTAGT 59.768 50.000 0.00 0.00 0.00 2.57
755 1370 2.166270 GCACACAAGAGCCAGCTAC 58.834 57.895 0.00 0.00 0.00 3.58
804 1471 3.774766 TGTGCTCGCTTATATATGGGGAT 59.225 43.478 11.33 0.00 0.00 3.85
809 1476 2.923655 CGGGTGTGCTCGCTTATATATG 59.076 50.000 0.00 0.00 0.00 1.78
820 1487 3.050275 GCTCCAACGGGTGTGCTC 61.050 66.667 0.00 0.00 34.93 4.26
821 1488 4.643387 GGCTCCAACGGGTGTGCT 62.643 66.667 7.90 0.00 34.93 4.40
824 1491 4.619227 CACGGCTCCAACGGGTGT 62.619 66.667 0.00 0.00 35.23 4.16
826 1493 4.309950 GTCACGGCTCCAACGGGT 62.310 66.667 0.00 0.00 35.91 5.28
829 1496 3.605749 ATGGGTCACGGCTCCAACG 62.606 63.158 0.00 0.00 33.90 4.10
843 1510 0.033796 AAGGCAGTGGTGATGATGGG 60.034 55.000 0.00 0.00 0.00 4.00
850 1517 1.003839 CGGCTAAAGGCAGTGGTGA 60.004 57.895 4.30 0.00 44.01 4.02
854 1521 1.066858 TCTTCTCGGCTAAAGGCAGTG 60.067 52.381 4.30 0.00 44.01 3.66
855 1522 1.267121 TCTTCTCGGCTAAAGGCAGT 58.733 50.000 4.30 0.00 44.01 4.40
857 1524 1.899814 TCTTCTTCTCGGCTAAAGGCA 59.100 47.619 4.30 0.00 44.01 4.75
858 1525 2.166664 TCTCTTCTTCTCGGCTAAAGGC 59.833 50.000 0.00 0.00 40.90 4.35
859 1526 4.098654 TGATCTCTTCTTCTCGGCTAAAGG 59.901 45.833 0.00 0.00 0.00 3.11
864 1534 2.733956 AGTGATCTCTTCTTCTCGGCT 58.266 47.619 0.00 0.00 0.00 5.52
883 1553 3.840437 AGCTCTCGCTCTGGCTAG 58.160 61.111 0.00 0.00 45.15 3.42
899 1569 5.527214 TGAAGTAGTGTTGTTGAATGGTGAG 59.473 40.000 0.00 0.00 0.00 3.51
905 1575 6.405397 GGTTTGGTGAAGTAGTGTTGTTGAAT 60.405 38.462 0.00 0.00 0.00 2.57
918 1588 2.024414 GTGAGCAAGGTTTGGTGAAGT 58.976 47.619 0.00 0.00 42.23 3.01
973 1643 2.202878 AACACGCACGCACACTCT 60.203 55.556 0.00 0.00 0.00 3.24
977 1647 1.761244 CTCTTCAACACGCACGCACA 61.761 55.000 0.00 0.00 0.00 4.57
981 1653 1.487482 TCTTCTCTTCAACACGCACG 58.513 50.000 0.00 0.00 0.00 5.34
983 1655 3.385193 TCATCTTCTCTTCAACACGCA 57.615 42.857 0.00 0.00 0.00 5.24
985 1657 3.993081 AGCTTCATCTTCTCTTCAACACG 59.007 43.478 0.00 0.00 0.00 4.49
1022 1697 0.975040 GCTCAAGCCTCCTCCTCTCA 60.975 60.000 0.00 0.00 34.31 3.27
1107 1782 2.219325 GAGGGAGTCAGTCGTGCCAG 62.219 65.000 0.00 0.00 0.00 4.85
1128 1803 0.178068 CGTCCATGGAACGGAAGGAT 59.822 55.000 18.20 0.00 33.29 3.24
1146 1825 3.004734 AGAAATCTTGGCTTCAAACACCG 59.995 43.478 0.00 0.00 0.00 4.94
1159 1838 9.924650 AGATCCAAAATCAGAAAAGAAATCTTG 57.075 29.630 0.00 0.00 36.12 3.02
1233 1920 4.579869 ACTGGCCTCTTTTGTACTATGTG 58.420 43.478 3.32 0.00 0.00 3.21
1239 1926 9.609346 TCTATAATTAACTGGCCTCTTTTGTAC 57.391 33.333 3.32 0.00 0.00 2.90
1278 1965 4.813750 AATCCTATTGCTTTGCTTTGCT 57.186 36.364 0.00 0.00 0.00 3.91
1279 1966 5.045872 CCTAATCCTATTGCTTTGCTTTGC 58.954 41.667 0.00 0.00 0.00 3.68
1280 1967 5.127682 ACCCTAATCCTATTGCTTTGCTTTG 59.872 40.000 0.00 0.00 0.00 2.77
1281 1968 5.272402 ACCCTAATCCTATTGCTTTGCTTT 58.728 37.500 0.00 0.00 0.00 3.51
1282 1969 4.871822 ACCCTAATCCTATTGCTTTGCTT 58.128 39.130 0.00 0.00 0.00 3.91
1303 1990 5.119743 GGAACTGAACCAACGAACACTATAC 59.880 44.000 0.00 0.00 0.00 1.47
1318 2009 1.268743 GCACACTTGCTGGAACTGAAC 60.269 52.381 0.00 0.00 46.17 3.18
1338 2038 2.513753 TGCAAGAACAGTACAATGGGG 58.486 47.619 0.00 0.00 0.00 4.96
1387 2090 3.332919 TCACTTCTCTTTCAGCTGATGC 58.667 45.455 19.04 0.00 40.05 3.91
1400 2103 6.017440 AGCTAGAACAGTATCGATCACTTCTC 60.017 42.308 0.00 3.71 0.00 2.87
1401 2104 5.825679 AGCTAGAACAGTATCGATCACTTCT 59.174 40.000 0.00 6.95 0.00 2.85
1402 2105 6.067263 AGCTAGAACAGTATCGATCACTTC 57.933 41.667 0.00 0.00 0.00 3.01
1404 2107 4.212425 CGAGCTAGAACAGTATCGATCACT 59.788 45.833 0.00 1.28 37.62 3.41
1405 2108 4.459606 CGAGCTAGAACAGTATCGATCAC 58.540 47.826 0.00 0.00 37.62 3.06
1406 2109 3.498777 CCGAGCTAGAACAGTATCGATCA 59.501 47.826 0.00 0.00 37.62 2.92
1407 2110 3.499157 ACCGAGCTAGAACAGTATCGATC 59.501 47.826 0.00 0.00 37.62 3.69
1409 2112 2.612672 CACCGAGCTAGAACAGTATCGA 59.387 50.000 0.00 0.00 37.62 3.59
1410 2113 2.355132 ACACCGAGCTAGAACAGTATCG 59.645 50.000 0.00 0.00 36.16 2.92
1471 2183 2.746279 TCTGGCAAAAGAACTGGGAA 57.254 45.000 0.00 0.00 0.00 3.97
1473 2185 4.706476 TCATATTCTGGCAAAAGAACTGGG 59.294 41.667 0.00 0.00 38.95 4.45
1474 2186 5.649395 TCTCATATTCTGGCAAAAGAACTGG 59.351 40.000 0.00 0.00 38.95 4.00
1475 2187 6.748333 TCTCATATTCTGGCAAAAGAACTG 57.252 37.500 0.00 1.26 38.95 3.16
1477 2189 8.465201 AGAATTCTCATATTCTGGCAAAAGAAC 58.535 33.333 0.88 0.00 41.94 3.01
1479 2191 8.585471 AAGAATTCTCATATTCTGGCAAAAGA 57.415 30.769 8.78 0.00 42.53 2.52
1480 2192 7.919621 GGAAGAATTCTCATATTCTGGCAAAAG 59.080 37.037 8.78 0.00 46.56 2.27
1481 2193 7.396907 TGGAAGAATTCTCATATTCTGGCAAAA 59.603 33.333 8.78 0.00 46.56 2.44
1482 2194 6.891361 TGGAAGAATTCTCATATTCTGGCAAA 59.109 34.615 8.78 0.00 46.56 3.68
1483 2195 6.425735 TGGAAGAATTCTCATATTCTGGCAA 58.574 36.000 8.78 0.00 46.56 4.52
1484 2196 6.005066 TGGAAGAATTCTCATATTCTGGCA 57.995 37.500 8.78 0.00 46.56 4.92
1485 2197 6.294473 TCTGGAAGAATTCTCATATTCTGGC 58.706 40.000 8.78 0.00 46.56 4.85
1501 2213 0.042731 AGGGGTCGGATTCTGGAAGA 59.957 55.000 0.00 0.00 44.68 2.87
1503 2215 1.835531 GTTAGGGGTCGGATTCTGGAA 59.164 52.381 0.00 0.00 0.00 3.53
1507 2219 1.497161 CTGGTTAGGGGTCGGATTCT 58.503 55.000 0.00 0.00 0.00 2.40
1508 2220 0.179054 GCTGGTTAGGGGTCGGATTC 60.179 60.000 0.00 0.00 0.00 2.52
1509 2221 0.620700 AGCTGGTTAGGGGTCGGATT 60.621 55.000 0.00 0.00 0.00 3.01
1510 2222 0.620700 AAGCTGGTTAGGGGTCGGAT 60.621 55.000 0.00 0.00 0.00 4.18
1511 2223 1.229400 AAGCTGGTTAGGGGTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
1512 2224 1.221021 GAAGCTGGTTAGGGGTCGG 59.779 63.158 0.00 0.00 0.00 4.79
1513 2225 0.613777 AAGAAGCTGGTTAGGGGTCG 59.386 55.000 0.00 0.00 0.00 4.79
1516 2228 3.375699 TCTAGAAGAAGCTGGTTAGGGG 58.624 50.000 0.00 0.00 0.00 4.79
1517 2229 5.606505 GATTCTAGAAGAAGCTGGTTAGGG 58.393 45.833 11.53 0.00 37.62 3.53
1527 2239 6.638610 TGAGGCTCAAAGATTCTAGAAGAAG 58.361 40.000 16.28 3.37 37.69 2.85
1528 2240 6.611613 TGAGGCTCAAAGATTCTAGAAGAA 57.388 37.500 16.28 0.00 38.78 2.52
1529 2241 6.805016 ATGAGGCTCAAAGATTCTAGAAGA 57.195 37.500 22.84 1.47 0.00 2.87
1530 2242 7.336427 ACAAATGAGGCTCAAAGATTCTAGAAG 59.664 37.037 22.84 4.56 0.00 2.85
1531 2243 7.170965 ACAAATGAGGCTCAAAGATTCTAGAA 58.829 34.615 22.84 7.82 0.00 2.10
1532 2244 6.715280 ACAAATGAGGCTCAAAGATTCTAGA 58.285 36.000 22.84 0.00 0.00 2.43
1534 2246 7.448161 TGAAACAAATGAGGCTCAAAGATTCTA 59.552 33.333 22.84 11.39 0.00 2.10
1535 2247 6.266103 TGAAACAAATGAGGCTCAAAGATTCT 59.734 34.615 22.84 0.00 0.00 2.40
1536 2248 6.364435 GTGAAACAAATGAGGCTCAAAGATTC 59.636 38.462 22.84 21.06 36.32 2.52
1537 2249 6.218746 GTGAAACAAATGAGGCTCAAAGATT 58.781 36.000 22.84 14.22 36.32 2.40
1538 2250 5.776744 GTGAAACAAATGAGGCTCAAAGAT 58.223 37.500 22.84 1.11 36.32 2.40
1539 2251 5.186996 GTGAAACAAATGAGGCTCAAAGA 57.813 39.130 22.84 0.00 36.32 2.52
1587 2299 9.700831 AGCCTTATTTGTTTTACAATCCTATCT 57.299 29.630 0.00 0.00 38.00 1.98
1588 2300 9.952188 GAGCCTTATTTGTTTTACAATCCTATC 57.048 33.333 0.00 0.00 38.00 2.08
1589 2301 9.474313 TGAGCCTTATTTGTTTTACAATCCTAT 57.526 29.630 0.00 0.00 38.00 2.57
1590 2302 8.871629 TGAGCCTTATTTGTTTTACAATCCTA 57.128 30.769 0.00 0.00 38.00 2.94
1591 2303 7.775053 TGAGCCTTATTTGTTTTACAATCCT 57.225 32.000 0.00 0.00 38.00 3.24
1592 2304 8.825667 TTTGAGCCTTATTTGTTTTACAATCC 57.174 30.769 0.00 0.00 38.00 3.01
1593 2305 9.691362 TCTTTGAGCCTTATTTGTTTTACAATC 57.309 29.630 0.00 0.00 38.00 2.67
1596 2308 9.691362 GAATCTTTGAGCCTTATTTGTTTTACA 57.309 29.630 0.00 0.00 0.00 2.41
1597 2309 9.914131 AGAATCTTTGAGCCTTATTTGTTTTAC 57.086 29.630 0.00 0.00 0.00 2.01
1598 2310 9.912634 CAGAATCTTTGAGCCTTATTTGTTTTA 57.087 29.630 0.00 0.00 0.00 1.52
1599 2311 7.874528 CCAGAATCTTTGAGCCTTATTTGTTTT 59.125 33.333 0.00 0.00 0.00 2.43
1600 2312 7.381323 CCAGAATCTTTGAGCCTTATTTGTTT 58.619 34.615 0.00 0.00 0.00 2.83
1601 2313 6.071165 CCCAGAATCTTTGAGCCTTATTTGTT 60.071 38.462 0.00 0.00 0.00 2.83
1602 2314 5.420104 CCCAGAATCTTTGAGCCTTATTTGT 59.580 40.000 0.00 0.00 0.00 2.83
1603 2315 5.653769 TCCCAGAATCTTTGAGCCTTATTTG 59.346 40.000 0.00 0.00 0.00 2.32
1604 2316 5.831103 TCCCAGAATCTTTGAGCCTTATTT 58.169 37.500 0.00 0.00 0.00 1.40
1605 2317 5.456921 TCCCAGAATCTTTGAGCCTTATT 57.543 39.130 0.00 0.00 0.00 1.40
1606 2318 5.456921 TTCCCAGAATCTTTGAGCCTTAT 57.543 39.130 0.00 0.00 0.00 1.73
1607 2319 4.927267 TTCCCAGAATCTTTGAGCCTTA 57.073 40.909 0.00 0.00 0.00 2.69
1608 2320 3.814504 TTCCCAGAATCTTTGAGCCTT 57.185 42.857 0.00 0.00 0.00 4.35
1609 2321 3.814504 TTTCCCAGAATCTTTGAGCCT 57.185 42.857 0.00 0.00 0.00 4.58
1610 2322 3.367806 GCTTTTCCCAGAATCTTTGAGCC 60.368 47.826 0.00 0.00 0.00 4.70
1611 2323 3.509184 AGCTTTTCCCAGAATCTTTGAGC 59.491 43.478 0.00 0.00 0.00 4.26
1612 2324 4.763793 TCAGCTTTTCCCAGAATCTTTGAG 59.236 41.667 0.00 0.00 0.00 3.02
1613 2325 4.728772 TCAGCTTTTCCCAGAATCTTTGA 58.271 39.130 0.00 0.00 0.00 2.69
1614 2326 4.522022 ACTCAGCTTTTCCCAGAATCTTTG 59.478 41.667 0.00 0.00 0.00 2.77
1615 2327 4.734266 ACTCAGCTTTTCCCAGAATCTTT 58.266 39.130 0.00 0.00 0.00 2.52
1616 2328 4.379302 ACTCAGCTTTTCCCAGAATCTT 57.621 40.909 0.00 0.00 0.00 2.40
1617 2329 4.080638 CCTACTCAGCTTTTCCCAGAATCT 60.081 45.833 0.00 0.00 0.00 2.40
1618 2330 4.195416 CCTACTCAGCTTTTCCCAGAATC 58.805 47.826 0.00 0.00 0.00 2.52
1619 2331 3.054065 CCCTACTCAGCTTTTCCCAGAAT 60.054 47.826 0.00 0.00 0.00 2.40
1620 2332 2.305927 CCCTACTCAGCTTTTCCCAGAA 59.694 50.000 0.00 0.00 0.00 3.02
1621 2333 1.909302 CCCTACTCAGCTTTTCCCAGA 59.091 52.381 0.00 0.00 0.00 3.86
1622 2334 1.065126 CCCCTACTCAGCTTTTCCCAG 60.065 57.143 0.00 0.00 0.00 4.45
1623 2335 0.991920 CCCCTACTCAGCTTTTCCCA 59.008 55.000 0.00 0.00 0.00 4.37
1624 2336 0.992695 ACCCCTACTCAGCTTTTCCC 59.007 55.000 0.00 0.00 0.00 3.97
1625 2337 2.437413 CAACCCCTACTCAGCTTTTCC 58.563 52.381 0.00 0.00 0.00 3.13
1626 2338 2.039879 TCCAACCCCTACTCAGCTTTTC 59.960 50.000 0.00 0.00 0.00 2.29
1627 2339 2.062636 TCCAACCCCTACTCAGCTTTT 58.937 47.619 0.00 0.00 0.00 2.27
1628 2340 1.742308 TCCAACCCCTACTCAGCTTT 58.258 50.000 0.00 0.00 0.00 3.51
1629 2341 1.972588 ATCCAACCCCTACTCAGCTT 58.027 50.000 0.00 0.00 0.00 3.74
1630 2342 1.840635 GAATCCAACCCCTACTCAGCT 59.159 52.381 0.00 0.00 0.00 4.24
1631 2343 1.840635 AGAATCCAACCCCTACTCAGC 59.159 52.381 0.00 0.00 0.00 4.26
1632 2344 2.171448 CCAGAATCCAACCCCTACTCAG 59.829 54.545 0.00 0.00 0.00 3.35
1633 2345 2.196595 CCAGAATCCAACCCCTACTCA 58.803 52.381 0.00 0.00 0.00 3.41
1634 2346 1.490910 CCCAGAATCCAACCCCTACTC 59.509 57.143 0.00 0.00 0.00 2.59
1635 2347 1.082194 TCCCAGAATCCAACCCCTACT 59.918 52.381 0.00 0.00 0.00 2.57
1636 2348 1.591768 TCCCAGAATCCAACCCCTAC 58.408 55.000 0.00 0.00 0.00 3.18
1637 2349 2.369668 TTCCCAGAATCCAACCCCTA 57.630 50.000 0.00 0.00 0.00 3.53
1638 2350 1.466858 TTTCCCAGAATCCAACCCCT 58.533 50.000 0.00 0.00 0.00 4.79
1639 2351 2.319025 TTTTCCCAGAATCCAACCCC 57.681 50.000 0.00 0.00 0.00 4.95
1640 2352 2.427095 CGATTTTCCCAGAATCCAACCC 59.573 50.000 0.00 0.00 31.35 4.11
1641 2353 3.089284 ACGATTTTCCCAGAATCCAACC 58.911 45.455 0.00 0.00 31.35 3.77
1642 2354 4.010349 AGACGATTTTCCCAGAATCCAAC 58.990 43.478 0.00 0.00 31.35 3.77
1643 2355 4.009675 CAGACGATTTTCCCAGAATCCAA 58.990 43.478 0.00 0.00 31.35 3.53
1644 2356 3.263170 TCAGACGATTTTCCCAGAATCCA 59.737 43.478 0.00 0.00 31.35 3.41
1645 2357 3.873910 TCAGACGATTTTCCCAGAATCC 58.126 45.455 0.00 0.00 31.35 3.01
1646 2358 5.819901 AGAATCAGACGATTTTCCCAGAATC 59.180 40.000 0.00 0.00 42.06 2.52
1647 2359 5.587844 CAGAATCAGACGATTTTCCCAGAAT 59.412 40.000 0.00 0.00 42.06 2.40
1648 2360 4.937620 CAGAATCAGACGATTTTCCCAGAA 59.062 41.667 0.00 0.00 42.06 3.02
1649 2361 4.507710 CAGAATCAGACGATTTTCCCAGA 58.492 43.478 0.00 0.00 42.06 3.86
1650 2362 3.624861 CCAGAATCAGACGATTTTCCCAG 59.375 47.826 0.00 0.00 42.06 4.45
1651 2363 3.609853 CCAGAATCAGACGATTTTCCCA 58.390 45.455 0.00 0.00 42.06 4.37
1652 2364 2.356069 GCCAGAATCAGACGATTTTCCC 59.644 50.000 0.00 0.00 42.06 3.97
1653 2365 3.009723 TGCCAGAATCAGACGATTTTCC 58.990 45.455 0.00 0.00 42.06 3.13
1654 2366 4.685169 TTGCCAGAATCAGACGATTTTC 57.315 40.909 0.00 0.00 42.06 2.29
1655 2367 5.241506 TCTTTTGCCAGAATCAGACGATTTT 59.758 36.000 0.00 0.00 42.06 1.82
1656 2368 4.761739 TCTTTTGCCAGAATCAGACGATTT 59.238 37.500 0.00 0.00 42.06 2.17
1657 2369 4.326826 TCTTTTGCCAGAATCAGACGATT 58.673 39.130 0.00 0.00 44.75 3.34
1658 2370 3.942829 TCTTTTGCCAGAATCAGACGAT 58.057 40.909 0.00 0.00 0.00 3.73
1659 2371 3.401033 TCTTTTGCCAGAATCAGACGA 57.599 42.857 0.00 0.00 0.00 4.20
1660 2372 3.499918 AGTTCTTTTGCCAGAATCAGACG 59.500 43.478 0.00 0.00 35.23 4.18
1661 2373 4.320788 CCAGTTCTTTTGCCAGAATCAGAC 60.321 45.833 0.00 0.00 35.23 3.51
1662 2374 3.822735 CCAGTTCTTTTGCCAGAATCAGA 59.177 43.478 0.00 0.00 35.23 3.27
1663 2375 3.057033 CCCAGTTCTTTTGCCAGAATCAG 60.057 47.826 0.00 0.00 35.23 2.90
1664 2376 2.892852 CCCAGTTCTTTTGCCAGAATCA 59.107 45.455 0.00 0.00 35.23 2.57
1665 2377 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
1666 2378 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
1667 2379 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
1668 2380 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
1669 2381 1.667722 GGCCCAGTTCTTTTGCCAG 59.332 57.895 0.00 0.00 41.76 4.85
1670 2382 2.199652 CGGCCCAGTTCTTTTGCCA 61.200 57.895 0.00 0.00 42.27 4.92
1671 2383 2.650778 CGGCCCAGTTCTTTTGCC 59.349 61.111 0.00 0.00 38.74 4.52
1672 2384 2.650778 CCGGCCCAGTTCTTTTGC 59.349 61.111 0.00 0.00 0.00 3.68
1673 2385 2.275380 CCCCGGCCCAGTTCTTTTG 61.275 63.158 0.00 0.00 0.00 2.44
1674 2386 2.117423 CCCCGGCCCAGTTCTTTT 59.883 61.111 0.00 0.00 0.00 2.27
1675 2387 2.856988 TCCCCGGCCCAGTTCTTT 60.857 61.111 0.00 0.00 0.00 2.52
1676 2388 3.330720 CTCCCCGGCCCAGTTCTT 61.331 66.667 0.00 0.00 0.00 2.52
1690 2402 3.011517 TCTCCTTGCTGCCCCTCC 61.012 66.667 0.00 0.00 0.00 4.30
1771 2498 4.438200 GCTGCTAGAGTAGACACTGAAGTC 60.438 50.000 0.00 0.00 34.21 3.01
1772 2499 3.442273 GCTGCTAGAGTAGACACTGAAGT 59.558 47.826 0.00 0.00 34.21 3.01
1774 2501 2.755655 GGCTGCTAGAGTAGACACTGAA 59.244 50.000 0.00 0.00 35.71 3.02
1775 2502 2.025793 AGGCTGCTAGAGTAGACACTGA 60.026 50.000 3.16 0.00 38.33 3.41
1777 2504 2.374184 CAGGCTGCTAGAGTAGACACT 58.626 52.381 0.00 0.00 38.33 3.55
1778 2505 1.407258 CCAGGCTGCTAGAGTAGACAC 59.593 57.143 9.56 0.00 38.33 3.67
1779 2506 1.769026 CCAGGCTGCTAGAGTAGACA 58.231 55.000 9.56 0.00 38.33 3.41
1781 2508 0.260230 AGCCAGGCTGCTAGAGTAGA 59.740 55.000 15.24 0.00 40.56 2.59
1800 2535 0.032515 TATGGGAGAGGAGAACGCCA 60.033 55.000 0.00 0.00 0.00 5.69
1801 2536 1.001406 CATATGGGAGAGGAGAACGCC 59.999 57.143 0.00 0.00 0.00 5.68
1802 2537 1.689273 ACATATGGGAGAGGAGAACGC 59.311 52.381 7.80 0.00 0.00 4.84
1803 2538 2.959030 TGACATATGGGAGAGGAGAACG 59.041 50.000 7.80 0.00 0.00 3.95
1804 2539 3.244044 GCTGACATATGGGAGAGGAGAAC 60.244 52.174 7.80 0.00 0.00 3.01
1816 2551 2.885676 GCACGCCCGCTGACATATG 61.886 63.158 0.00 0.00 0.00 1.78
1851 2599 4.711949 CAGCGTTGGGGCAGAGCT 62.712 66.667 0.00 0.00 38.90 4.09
1870 2618 2.202810 GTCTGGTGGCTAGCTCGC 60.203 66.667 15.72 11.13 0.00 5.03
1878 2626 0.886490 CACTCACTTGGTCTGGTGGC 60.886 60.000 0.00 0.00 34.57 5.01
1879 2627 0.758734 TCACTCACTTGGTCTGGTGG 59.241 55.000 0.00 0.00 34.57 4.61
1880 2628 2.301296 AGATCACTCACTTGGTCTGGTG 59.699 50.000 0.00 0.00 35.52 4.17
1881 2629 2.614259 AGATCACTCACTTGGTCTGGT 58.386 47.619 0.00 0.00 35.52 4.00
1883 2631 3.744942 CACAAGATCACTCACTTGGTCTG 59.255 47.826 0.00 0.00 45.03 3.51
1884 2632 3.805108 GCACAAGATCACTCACTTGGTCT 60.805 47.826 0.00 0.00 45.03 3.85
1885 2633 2.481952 GCACAAGATCACTCACTTGGTC 59.518 50.000 0.00 0.00 45.03 4.02
1887 2635 2.497138 TGCACAAGATCACTCACTTGG 58.503 47.619 0.00 0.00 45.03 3.61
1925 2674 9.772973 AAGACAACGGAATGCATATACTAATAA 57.227 29.630 0.00 0.00 0.00 1.40
1926 2675 9.772973 AAAGACAACGGAATGCATATACTAATA 57.227 29.630 0.00 0.00 0.00 0.98
1927 2676 8.559536 CAAAGACAACGGAATGCATATACTAAT 58.440 33.333 0.00 0.00 0.00 1.73
1928 2677 7.766738 TCAAAGACAACGGAATGCATATACTAA 59.233 33.333 0.00 0.00 0.00 2.24
1931 2680 6.358118 TCAAAGACAACGGAATGCATATAC 57.642 37.500 0.00 0.00 0.00 1.47
1944 2693 6.862944 TCACGAAATGTTTTCAAAGACAAC 57.137 33.333 0.00 0.00 0.00 3.32
1945 2694 8.472683 AATTCACGAAATGTTTTCAAAGACAA 57.527 26.923 0.00 0.00 0.00 3.18
1985 2735 7.519002 AGTCGATGAACCTTTTCTAAAATTCG 58.481 34.615 0.00 0.00 32.36 3.34
1993 2743 6.693315 TTTTTGAGTCGATGAACCTTTTCT 57.307 33.333 0.00 0.00 32.36 2.52
2035 2785 9.573133 ACATTCTTTCAAGACACAAACTTTTAG 57.427 29.630 0.00 0.00 34.13 1.85
2069 2821 8.729805 ACAATGCTTTGAACATTTTCCTAAAA 57.270 26.923 18.35 0.00 35.58 1.52
2084 2836 6.563222 ATGAAATTCCCAAACAATGCTTTG 57.437 33.333 10.58 10.58 38.86 2.77
2088 2840 9.344309 CAATTTTATGAAATTCCCAAACAATGC 57.656 29.630 5.28 0.00 42.14 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.