Multiple sequence alignment - TraesCS7D01G505900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G505900 chr7D 100.000 3975 0 0 1 3975 611083875 611079901 0.000000e+00 7341.0
1 TraesCS7D01G505900 chr7D 86.581 1565 148 29 1838 3378 611074210 611072684 0.000000e+00 1670.0
2 TraesCS7D01G505900 chr7D 88.554 961 64 20 867 1827 611075203 611074289 0.000000e+00 1123.0
3 TraesCS7D01G505900 chr7D 84.802 329 50 0 1157 1485 611014993 611014665 8.230000e-87 331.0
4 TraesCS7D01G505900 chr7D 96.026 151 6 0 3825 3975 611072448 611072298 3.070000e-61 246.0
5 TraesCS7D01G505900 chr7D 80.866 277 53 0 1558 1834 611014625 611014349 6.690000e-53 219.0
6 TraesCS7D01G505900 chr7A 93.684 1805 87 16 4 1802 701039246 701037463 0.000000e+00 2676.0
7 TraesCS7D01G505900 chr7A 90.052 1337 104 12 1829 3147 701036997 701035672 0.000000e+00 1705.0
8 TraesCS7D01G505900 chr7A 84.233 1649 178 50 1838 3462 701031969 701030379 0.000000e+00 1530.0
9 TraesCS7D01G505900 chr7A 87.093 984 76 24 845 1827 701032981 701032048 0.000000e+00 1066.0
10 TraesCS7D01G505900 chr7A 79.372 446 80 3 1040 1485 700964642 700964209 1.790000e-78 303.0
11 TraesCS7D01G505900 chr7A 80.986 426 42 23 3559 3975 701030335 701029940 6.460000e-78 302.0
12 TraesCS7D01G505900 chr7A 92.053 151 7 4 3478 3628 701034295 701034150 1.450000e-49 207.0
13 TraesCS7D01G505900 chr1B 82.583 333 55 3 1153 1484 684045210 684044880 1.400000e-74 291.0
14 TraesCS7D01G505900 chr1A 86.364 132 18 0 1163 1294 32191070 32191201 1.150000e-30 145.0
15 TraesCS7D01G505900 chr1A 77.778 243 41 8 1156 1390 567988673 567988436 1.930000e-28 137.0
16 TraesCS7D01G505900 chr1D 75.610 328 56 16 1160 1472 473623547 473623229 1.490000e-29 141.0
17 TraesCS7D01G505900 chr5D 85.039 127 19 0 1168 1294 350689167 350689041 3.220000e-26 130.0
18 TraesCS7D01G505900 chr5D 83.478 115 18 1 1181 1294 545903733 545903847 5.430000e-19 106.0
19 TraesCS7D01G505900 chr6A 94.737 38 1 1 635 671 47106292 47106329 1.540000e-04 58.4
20 TraesCS7D01G505900 chr6D 94.444 36 1 1 636 670 406648792 406648757 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G505900 chr7D 611079901 611083875 3974 True 7341.000000 7341 100.000000 1 3975 1 chr7D.!!$R1 3974
1 TraesCS7D01G505900 chr7D 611072298 611075203 2905 True 1013.000000 1670 90.387000 867 3975 3 chr7D.!!$R3 3108
2 TraesCS7D01G505900 chr7D 611014349 611014993 644 True 275.000000 331 82.834000 1157 1834 2 chr7D.!!$R2 677
3 TraesCS7D01G505900 chr7A 701029940 701039246 9306 True 1247.666667 2676 88.016833 4 3975 6 chr7A.!!$R2 3971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 982 0.249911 CGAATCCCTCGTTCCCCATC 60.250 60.0 0.00 0.00 42.89 3.51 F
1317 1324 0.251430 GCCGACTATAGCCTCTCCCT 60.251 60.0 0.00 0.00 0.00 4.20 F
2743 8207 0.035534 TTGACACGGCATGCCACTAT 60.036 50.0 34.93 17.84 35.37 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2724 8188 0.035534 ATAGTGGCATGCCGTGTCAA 60.036 50.0 30.87 10.37 45.54 3.18 R
2792 8258 0.320247 AGCACAGCCGAACAGAGAAG 60.320 55.0 0.00 0.00 0.00 2.85 R
3556 9065 0.029834 CACTGCACAAAGTCTGCACC 59.970 55.0 0.00 0.00 39.76 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.300009 CAATTGAACAACGAGCAGAACC 58.700 45.455 0.00 0.00 0.00 3.62
97 98 0.850100 TCCTTCACTTCAAGGCCCAA 59.150 50.000 0.00 0.00 42.63 4.12
98 99 1.216678 TCCTTCACTTCAAGGCCCAAA 59.783 47.619 0.00 0.00 42.63 3.28
191 192 3.295093 TGAACTGAAATTTCCCAGCACA 58.705 40.909 15.48 8.55 33.90 4.57
663 668 5.363939 CCTCCATCTCAAAATAGGTGTCTC 58.636 45.833 0.00 0.00 0.00 3.36
756 761 4.034285 ACACTTGTTTTAGGATGGAGGG 57.966 45.455 0.00 0.00 0.00 4.30
859 864 1.753956 CTAATTGTAATTGGGCGCGC 58.246 50.000 25.94 25.94 0.00 6.86
862 867 1.391157 ATTGTAATTGGGCGCGCCAT 61.391 50.000 46.88 32.34 37.98 4.40
882 887 1.456296 AATCCCTTTTAACCGCGTCC 58.544 50.000 4.92 0.00 0.00 4.79
914 919 4.193334 GGGCGCGCCAAAATCCTC 62.193 66.667 46.88 26.19 37.98 3.71
945 950 2.069273 CGCTATTTCTTCCGCCCATAG 58.931 52.381 0.00 0.00 0.00 2.23
977 982 0.249911 CGAATCCCTCGTTCCCCATC 60.250 60.000 0.00 0.00 42.89 3.51
1105 1112 2.966309 GAAGCGCAAGTTGGACCGG 61.966 63.158 11.47 0.00 41.68 5.28
1180 1187 0.320374 TCGACTTCATCAACGCCCTT 59.680 50.000 0.00 0.00 0.00 3.95
1216 1223 2.170187 GTGCACCATCATCTCTCTCCTT 59.830 50.000 5.22 0.00 0.00 3.36
1297 1304 2.597510 GCGCCCCTCAACCTTGTT 60.598 61.111 0.00 0.00 0.00 2.83
1317 1324 0.251430 GCCGACTATAGCCTCTCCCT 60.251 60.000 0.00 0.00 0.00 4.20
1416 1423 1.883084 GCCTCCATGAACGCTACCG 60.883 63.158 0.00 0.00 41.14 4.02
1472 1479 1.077625 ACCGACCTCCAAGAGCTCT 59.922 57.895 11.45 11.45 0.00 4.09
1485 1492 2.583593 GCTCTGCTTCGGCTACGG 60.584 66.667 0.00 0.00 42.37 4.02
1490 1497 4.867599 GCTTCGGCTACGGACCCG 62.868 72.222 6.94 6.94 45.64 5.28
1532 6921 4.241555 GCCGTCCCATCTGCCGAT 62.242 66.667 0.00 0.00 0.00 4.18
1541 6930 2.797278 ATCTGCCGATGACCCCGAC 61.797 63.158 0.00 0.00 0.00 4.79
1542 6931 3.770040 CTGCCGATGACCCCGACA 61.770 66.667 0.00 0.00 0.00 4.35
1543 6932 4.077184 TGCCGATGACCCCGACAC 62.077 66.667 0.00 0.00 0.00 3.67
1544 6933 4.832608 GCCGATGACCCCGACACC 62.833 72.222 0.00 0.00 0.00 4.16
1545 6934 4.157120 CCGATGACCCCGACACCC 62.157 72.222 0.00 0.00 0.00 4.61
1546 6935 3.075005 CGATGACCCCGACACCCT 61.075 66.667 0.00 0.00 0.00 4.34
1547 6936 2.901042 GATGACCCCGACACCCTC 59.099 66.667 0.00 0.00 0.00 4.30
1548 6937 3.075005 ATGACCCCGACACCCTCG 61.075 66.667 0.00 0.00 42.54 4.63
1549 6938 3.595428 ATGACCCCGACACCCTCGA 62.595 63.158 0.00 0.00 46.14 4.04
1649 7038 3.077359 CCAAGTCTCTGAATTTTCCGCT 58.923 45.455 0.00 0.00 0.00 5.52
1673 7062 1.808343 CAAGCAGCTCAGCATGTACAA 59.192 47.619 0.00 0.00 37.40 2.41
1742 7131 2.743538 GCAGCTCACCACGCATGA 60.744 61.111 0.00 0.00 0.00 3.07
1759 7148 3.083997 AGGTCACCATCTCGGGGC 61.084 66.667 0.00 0.00 38.54 5.80
1789 7178 2.046120 GCTTGCTCTCTGGCTGCT 60.046 61.111 0.00 0.00 32.89 4.24
1806 7195 1.956477 TGCTTTTCACTGGAAAGCCTC 59.044 47.619 25.79 5.84 43.47 4.70
1827 7216 6.599638 GCCTCTTACTGAAAGATAATGTTGGT 59.400 38.462 0.00 0.00 43.32 3.67
1836 7225 8.017418 TGAAAGATAATGTTGGTTTTTCTGGT 57.983 30.769 0.00 0.00 0.00 4.00
1837 7226 8.482128 TGAAAGATAATGTTGGTTTTTCTGGTT 58.518 29.630 0.00 0.00 0.00 3.67
1838 7227 8.661352 AAAGATAATGTTGGTTTTTCTGGTTG 57.339 30.769 0.00 0.00 0.00 3.77
1839 7228 7.360113 AGATAATGTTGGTTTTTCTGGTTGT 57.640 32.000 0.00 0.00 0.00 3.32
1842 7300 5.612725 ATGTTGGTTTTTCTGGTTGTCAT 57.387 34.783 0.00 0.00 0.00 3.06
1849 7307 3.490439 TTTCTGGTTGTCATGAGCTGA 57.510 42.857 0.00 0.00 0.00 4.26
1856 7314 3.451526 GTTGTCATGAGCTGATCATCGA 58.548 45.455 5.26 4.89 46.01 3.59
1860 7318 3.056678 GTCATGAGCTGATCATCGAGGAT 60.057 47.826 13.19 13.19 46.01 3.24
1864 7322 0.321021 GCTGATCATCGAGGATGCCT 59.679 55.000 18.60 0.00 39.63 4.75
1884 7342 0.879765 CTTGCCTTGAGAGGTTGCTG 59.120 55.000 0.00 0.00 45.44 4.41
1891 7349 1.123861 TGAGAGGTTGCTGCCACTCT 61.124 55.000 18.91 14.84 43.60 3.24
1892 7350 0.390998 GAGAGGTTGCTGCCACTCTC 60.391 60.000 21.26 21.26 46.15 3.20
1894 7352 0.390998 GAGGTTGCTGCCACTCTCTC 60.391 60.000 3.76 0.00 0.00 3.20
1895 7353 1.376553 GGTTGCTGCCACTCTCTCC 60.377 63.158 3.76 0.00 0.00 3.71
1898 7356 0.833409 TTGCTGCCACTCTCTCCAGA 60.833 55.000 0.00 0.00 0.00 3.86
1927 7385 2.027385 CCTCGACAGTCCAGATCATCA 58.973 52.381 0.00 0.00 0.00 3.07
2021 7485 5.585820 TTTCAGGTAAACAACAGGTTTCC 57.414 39.130 0.00 0.00 46.61 3.13
2031 7495 3.117888 ACAACAGGTTTCCAGAGTCATGT 60.118 43.478 0.00 0.00 0.00 3.21
2040 7504 6.655003 GGTTTCCAGAGTCATGTAATCTGAAA 59.345 38.462 19.36 15.33 42.48 2.69
2059 7523 9.850628 ATCTGAAATCATACATGAAAGTTGTTG 57.149 29.630 0.00 0.00 40.69 3.33
2062 7526 9.462174 TGAAATCATACATGAAAGTTGTTGTTC 57.538 29.630 0.00 0.00 40.69 3.18
2135 7599 3.746900 GGAAATGCCTGCCATCAAC 57.253 52.632 0.00 0.00 31.43 3.18
2153 7617 1.603456 ACGTGACAACCATCATGCAA 58.397 45.000 0.00 0.00 38.91 4.08
2156 7620 2.676076 GTGACAACCATCATGCAAACC 58.324 47.619 0.00 0.00 0.00 3.27
2159 7623 1.000385 ACAACCATCATGCAAACCGTG 60.000 47.619 0.00 0.00 0.00 4.94
2174 7638 5.051307 GCAAACCGTGAAGTTTTTGGTTATC 60.051 40.000 6.93 0.88 41.85 1.75
2178 7642 4.212636 CCGTGAAGTTTTTGGTTATCGACT 59.787 41.667 0.00 0.00 0.00 4.18
2180 7644 5.176958 CGTGAAGTTTTTGGTTATCGACTCT 59.823 40.000 0.00 0.00 0.00 3.24
2195 7659 0.908198 ACTCTGTTGGCCCTGATCTC 59.092 55.000 0.00 0.00 0.00 2.75
2196 7660 0.907486 CTCTGTTGGCCCTGATCTCA 59.093 55.000 0.00 0.00 0.00 3.27
2224 7688 1.542492 ATTGGCTTCCTCAAGTGCTG 58.458 50.000 0.00 0.00 31.45 4.41
2232 7696 4.666253 TCAAGTGCTGCCCCTGCC 62.666 66.667 0.00 0.00 36.33 4.85
2261 7725 7.835822 AGAGGCTGTATATCATTGTGAGTATC 58.164 38.462 0.00 0.00 0.00 2.24
2263 7727 5.807520 GGCTGTATATCATTGTGAGTATCCG 59.192 44.000 0.00 0.00 0.00 4.18
2269 7733 9.938670 GTATATCATTGTGAGTATCCGTATCTC 57.061 37.037 0.00 0.00 0.00 2.75
2270 7734 8.815565 ATATCATTGTGAGTATCCGTATCTCT 57.184 34.615 0.00 0.00 0.00 3.10
2271 7735 6.319141 TCATTGTGAGTATCCGTATCTCTG 57.681 41.667 0.00 0.00 0.00 3.35
2272 7736 4.569761 TTGTGAGTATCCGTATCTCTGC 57.430 45.455 0.00 0.00 0.00 4.26
2273 7737 3.821748 TGTGAGTATCCGTATCTCTGCT 58.178 45.455 0.00 0.00 0.00 4.24
2274 7738 4.207955 TGTGAGTATCCGTATCTCTGCTT 58.792 43.478 0.00 0.00 0.00 3.91
2275 7739 4.036852 TGTGAGTATCCGTATCTCTGCTTG 59.963 45.833 0.00 0.00 0.00 4.01
2276 7740 4.036971 GTGAGTATCCGTATCTCTGCTTGT 59.963 45.833 0.00 0.00 0.00 3.16
2277 7741 4.645136 TGAGTATCCGTATCTCTGCTTGTT 59.355 41.667 0.00 0.00 0.00 2.83
2278 7742 5.127194 TGAGTATCCGTATCTCTGCTTGTTT 59.873 40.000 0.00 0.00 0.00 2.83
2279 7743 5.978814 AGTATCCGTATCTCTGCTTGTTTT 58.021 37.500 0.00 0.00 0.00 2.43
2280 7744 7.108841 AGTATCCGTATCTCTGCTTGTTTTA 57.891 36.000 0.00 0.00 0.00 1.52
2281 7745 7.553334 AGTATCCGTATCTCTGCTTGTTTTAA 58.447 34.615 0.00 0.00 0.00 1.52
2326 7790 7.060633 GTCGATTAAACAACTGCCTTTACATTG 59.939 37.037 0.00 0.00 0.00 2.82
2327 7791 6.183359 CGATTAAACAACTGCCTTTACATTGC 60.183 38.462 0.00 0.00 0.00 3.56
2355 7819 1.153489 CCATCTCCAGTCGCACCTG 60.153 63.158 0.00 0.00 0.00 4.00
2356 7820 1.607801 CCATCTCCAGTCGCACCTGA 61.608 60.000 1.32 0.00 34.23 3.86
2389 7853 8.531622 AATGAAAAATGTGCGAAAATATGACA 57.468 26.923 0.00 0.00 0.00 3.58
2390 7854 7.332003 TGAAAAATGTGCGAAAATATGACAC 57.668 32.000 0.00 0.00 0.00 3.67
2511 7975 8.712463 TTCATCTTGAATGCAATGGTGCTAGAA 61.712 37.037 0.00 0.00 40.50 2.10
2547 8011 0.524862 CCCTCAACAGCTGCAATGAC 59.475 55.000 15.27 0.00 0.00 3.06
2581 8045 0.607762 TCAACATAGGCGGCTGCAAA 60.608 50.000 23.55 6.68 45.35 3.68
2587 8051 2.476852 TAGGCGGCTGCAAATGGACA 62.477 55.000 23.55 0.00 45.35 4.02
2602 8066 4.734398 ATGGACAACAGAGCTTCTCTAG 57.266 45.455 0.00 0.00 38.99 2.43
2617 8081 5.695816 GCTTCTCTAGATGCTCGATTTGAAT 59.304 40.000 9.86 0.00 40.69 2.57
2638 8102 5.734855 ATTCAAACGATATTTCTGTCGGG 57.265 39.130 0.00 0.00 39.98 5.14
2640 8104 5.018539 TCAAACGATATTTCTGTCGGGAT 57.981 39.130 0.00 0.00 39.98 3.85
2644 8108 3.067106 CGATATTTCTGTCGGGATTGGG 58.933 50.000 0.00 0.00 32.91 4.12
2645 8109 2.341846 TATTTCTGTCGGGATTGGGC 57.658 50.000 0.00 0.00 0.00 5.36
2647 8111 0.404040 TTTCTGTCGGGATTGGGCTT 59.596 50.000 0.00 0.00 0.00 4.35
2648 8112 0.322456 TTCTGTCGGGATTGGGCTTG 60.322 55.000 0.00 0.00 0.00 4.01
2649 8113 1.750399 CTGTCGGGATTGGGCTTGG 60.750 63.158 0.00 0.00 0.00 3.61
2653 8117 2.052104 CGGGATTGGGCTTGGTTCC 61.052 63.158 0.00 0.00 0.00 3.62
2654 8118 1.078347 GGGATTGGGCTTGGTTCCA 59.922 57.895 0.00 0.00 0.00 3.53
2655 8119 1.257750 GGGATTGGGCTTGGTTCCAC 61.258 60.000 0.00 0.00 32.00 4.02
2716 8180 5.453339 CCCTTTGCTGATAGGTTCGAGAATA 60.453 44.000 0.00 0.00 0.00 1.75
2717 8181 5.463724 CCTTTGCTGATAGGTTCGAGAATAC 59.536 44.000 0.00 0.00 0.00 1.89
2724 8188 5.839063 TGATAGGTTCGAGAATACCATCCTT 59.161 40.000 6.77 0.00 36.87 3.36
2725 8189 6.326583 TGATAGGTTCGAGAATACCATCCTTT 59.673 38.462 6.77 0.00 36.87 3.11
2726 8190 4.770795 AGGTTCGAGAATACCATCCTTTG 58.229 43.478 6.77 0.00 36.87 2.77
2727 8191 4.469945 AGGTTCGAGAATACCATCCTTTGA 59.530 41.667 6.77 0.00 36.87 2.69
2728 8192 4.571176 GGTTCGAGAATACCATCCTTTGAC 59.429 45.833 0.00 0.00 34.48 3.18
2729 8193 5.175859 GTTCGAGAATACCATCCTTTGACA 58.824 41.667 0.00 0.00 0.00 3.58
2730 8194 4.755411 TCGAGAATACCATCCTTTGACAC 58.245 43.478 0.00 0.00 0.00 3.67
2731 8195 3.551890 CGAGAATACCATCCTTTGACACG 59.448 47.826 0.00 0.00 0.00 4.49
2732 8196 3.871594 GAGAATACCATCCTTTGACACGG 59.128 47.826 0.00 0.00 0.00 4.94
2733 8197 2.038387 ATACCATCCTTTGACACGGC 57.962 50.000 0.00 0.00 0.00 5.68
2734 8198 0.687920 TACCATCCTTTGACACGGCA 59.312 50.000 0.00 0.00 0.00 5.69
2735 8199 0.038166 ACCATCCTTTGACACGGCAT 59.962 50.000 0.00 0.00 0.00 4.40
2736 8200 0.452987 CCATCCTTTGACACGGCATG 59.547 55.000 0.00 0.00 0.00 4.06
2737 8201 0.179156 CATCCTTTGACACGGCATGC 60.179 55.000 9.90 9.90 0.00 4.06
2738 8202 1.315257 ATCCTTTGACACGGCATGCC 61.315 55.000 27.67 27.67 0.00 4.40
2739 8203 2.267351 CCTTTGACACGGCATGCCA 61.267 57.895 34.93 13.85 35.37 4.92
2740 8204 1.081242 CTTTGACACGGCATGCCAC 60.081 57.895 34.93 22.01 35.37 5.01
2741 8205 1.518056 CTTTGACACGGCATGCCACT 61.518 55.000 34.93 17.59 35.37 4.00
2742 8206 0.250510 TTTGACACGGCATGCCACTA 60.251 50.000 34.93 16.78 35.37 2.74
2743 8207 0.035534 TTGACACGGCATGCCACTAT 60.036 50.000 34.93 17.84 35.37 2.12
2744 8208 0.827368 TGACACGGCATGCCACTATA 59.173 50.000 34.93 15.95 35.37 1.31
2745 8209 1.416030 TGACACGGCATGCCACTATAT 59.584 47.619 34.93 14.51 35.37 0.86
2746 8210 1.800586 GACACGGCATGCCACTATATG 59.199 52.381 34.93 22.69 35.37 1.78
2747 8211 1.140852 ACACGGCATGCCACTATATGT 59.859 47.619 34.93 23.28 35.37 2.29
2748 8212 1.800586 CACGGCATGCCACTATATGTC 59.199 52.381 34.93 5.36 35.37 3.06
2752 8216 2.224621 GGCATGCCACTATATGTCTGGT 60.225 50.000 32.08 0.00 35.81 4.00
2756 8220 2.700371 TGCCACTATATGTCTGGTCTGG 59.300 50.000 0.00 0.00 0.00 3.86
2792 8258 4.207891 TGAAGTTATCCCACTCTTCTGC 57.792 45.455 0.00 0.00 37.67 4.26
2820 8286 1.369209 CGGCTGTGCTTGAACGTTG 60.369 57.895 5.00 0.00 0.00 4.10
2826 8292 3.486875 GCTGTGCTTGAACGTTGTTTACT 60.487 43.478 5.00 0.00 0.00 2.24
2862 8328 9.494479 GTTGATGTCATATTGTAAGATGTGTTG 57.506 33.333 0.00 0.00 0.00 3.33
2887 8353 2.315925 TTACACCATCAGCTAGCAGC 57.684 50.000 18.83 0.00 42.84 5.25
2915 8381 3.940852 TGCTTCTGTACTGCATGTAATGG 59.059 43.478 0.00 0.00 46.86 3.16
3008 8481 4.628074 TCTGTACAGGCTGTAGTGTTTTC 58.372 43.478 26.87 13.90 32.84 2.29
3010 8483 5.031066 TGTACAGGCTGTAGTGTTTTCTT 57.969 39.130 26.87 0.00 32.84 2.52
3013 8486 5.500645 ACAGGCTGTAGTGTTTTCTTTTC 57.499 39.130 20.61 0.00 0.00 2.29
3015 8488 5.652452 ACAGGCTGTAGTGTTTTCTTTTCTT 59.348 36.000 20.61 0.00 0.00 2.52
3016 8489 6.152831 ACAGGCTGTAGTGTTTTCTTTTCTTT 59.847 34.615 20.61 0.00 0.00 2.52
3018 8491 7.220875 CAGGCTGTAGTGTTTTCTTTTCTTTTC 59.779 37.037 6.28 0.00 0.00 2.29
3021 8494 9.140286 GCTGTAGTGTTTTCTTTTCTTTTCTTT 57.860 29.630 0.00 0.00 0.00 2.52
3052 8534 9.104965 TGTCATATTGTAAGCTGTTTATACCAC 57.895 33.333 0.00 0.00 0.00 4.16
3069 8555 3.503365 ACCACCAGTTAGCACTACTACA 58.497 45.455 0.00 0.00 0.00 2.74
3072 8558 4.870426 CCACCAGTTAGCACTACTACAATG 59.130 45.833 0.00 0.00 0.00 2.82
3081 8567 5.704217 GCACTACTACAATGCTTCTACAC 57.296 43.478 0.00 0.00 36.40 2.90
3083 8569 6.561614 GCACTACTACAATGCTTCTACACTA 58.438 40.000 0.00 0.00 36.40 2.74
3088 8574 6.334202 ACTACAATGCTTCTACACTAGCTTC 58.666 40.000 0.00 0.00 38.22 3.86
3096 8582 7.386851 TGCTTCTACACTAGCTTCAGTAAATT 58.613 34.615 0.00 0.00 38.22 1.82
3126 8612 9.404848 GGCCTATATAATACCTATTTTTGTCCC 57.595 37.037 0.00 0.00 0.00 4.46
3132 8618 6.505044 AATACCTATTTTTGTCCCACGAAC 57.495 37.500 0.00 0.00 0.00 3.95
3134 8620 3.150767 CCTATTTTTGTCCCACGAACCA 58.849 45.455 0.00 0.00 0.00 3.67
3142 8628 0.183971 TCCCACGAACCAAACCATGT 59.816 50.000 0.00 0.00 0.00 3.21
3164 8650 5.417580 TGTATGGCTTATTTTTCCTGTCCAC 59.582 40.000 0.00 0.00 0.00 4.02
3165 8651 2.817258 TGGCTTATTTTTCCTGTCCACG 59.183 45.455 0.00 0.00 0.00 4.94
3168 8654 4.157840 GGCTTATTTTTCCTGTCCACGAAT 59.842 41.667 0.00 0.00 0.00 3.34
3170 8656 6.255950 GCTTATTTTTCCTGTCCACGAATAC 58.744 40.000 0.00 0.00 0.00 1.89
3172 8658 5.880054 ATTTTTCCTGTCCACGAATACTG 57.120 39.130 0.00 0.00 0.00 2.74
3175 8661 5.471556 TTTCCTGTCCACGAATACTGTTA 57.528 39.130 0.00 0.00 0.00 2.41
3179 8665 5.046878 TCCTGTCCACGAATACTGTTATTGT 60.047 40.000 0.00 0.00 0.00 2.71
3182 8668 7.124347 TGTCCACGAATACTGTTATTGTTTC 57.876 36.000 0.00 0.00 0.00 2.78
3187 8673 7.904977 CCACGAATACTGTTATTGTTTCATCAG 59.095 37.037 0.00 0.00 0.00 2.90
3197 8683 8.243426 TGTTATTGTTTCATCAGCAATTAGGTC 58.757 33.333 0.00 0.00 34.97 3.85
3198 8684 6.839124 ATTGTTTCATCAGCAATTAGGTCA 57.161 33.333 0.00 0.00 29.59 4.02
3204 8690 9.241317 GTTTCATCAGCAATTAGGTCAATATTG 57.759 33.333 9.29 9.29 33.49 1.90
3234 8721 8.421249 AAAAATGGTTTATGGAGATTGAGTGA 57.579 30.769 0.00 0.00 0.00 3.41
3237 8724 8.682936 AATGGTTTATGGAGATTGAGTGATAC 57.317 34.615 0.00 0.00 0.00 2.24
3241 8728 7.600752 GGTTTATGGAGATTGAGTGATACTAGC 59.399 40.741 0.00 0.00 0.00 3.42
3249 8736 6.548993 AGATTGAGTGATACTAGCTGTCATGA 59.451 38.462 0.00 0.00 0.00 3.07
3286 8773 4.580868 TGAGTAGTTCTCATGACTCGTCT 58.419 43.478 0.00 0.00 46.77 4.18
3296 8783 2.820059 TGACTCGTCTTTCTGTGCAT 57.180 45.000 0.00 0.00 0.00 3.96
3305 8792 4.213270 CGTCTTTCTGTGCATTTGTTCCTA 59.787 41.667 0.00 0.00 0.00 2.94
3309 8796 6.321181 TCTTTCTGTGCATTTGTTCCTACTTT 59.679 34.615 0.00 0.00 0.00 2.66
3310 8797 5.437289 TCTGTGCATTTGTTCCTACTTTG 57.563 39.130 0.00 0.00 0.00 2.77
3313 8800 4.202101 TGTGCATTTGTTCCTACTTTGGTG 60.202 41.667 0.00 0.00 0.00 4.17
3320 8807 3.136809 TGTTCCTACTTTGGTGGCAGTTA 59.863 43.478 0.00 0.00 0.00 2.24
3322 8809 2.304761 TCCTACTTTGGTGGCAGTTAGG 59.695 50.000 0.00 0.00 0.00 2.69
3334 8821 1.821216 CAGTTAGGTGGCGGAACATT 58.179 50.000 0.00 0.00 0.00 2.71
3335 8822 1.468520 CAGTTAGGTGGCGGAACATTG 59.531 52.381 0.00 0.00 0.00 2.82
3356 8843 2.330254 TTTTTGGCAGCCTGTCTCG 58.670 52.632 14.15 0.00 0.00 4.04
3363 8850 1.662608 CAGCCTGTCTCGTGAGTGT 59.337 57.895 0.00 0.00 0.00 3.55
3373 8860 3.863424 GTCTCGTGAGTGTTGTTTCTTCA 59.137 43.478 0.00 0.00 0.00 3.02
3397 8906 0.396435 ACTTGTGACAGATGGGCGAA 59.604 50.000 0.00 0.00 0.00 4.70
3429 8938 8.690203 TTGAGATTTACACTCAAATGGAAGAA 57.310 30.769 0.00 0.00 46.68 2.52
3442 8951 5.397142 AATGGAAGAACTTTGATGAAGCC 57.603 39.130 0.00 0.00 39.04 4.35
3462 8971 4.159693 AGCCTTTTGGTTTTATCGGGATTC 59.840 41.667 0.00 0.00 42.99 2.52
3463 8972 4.679639 GCCTTTTGGTTTTATCGGGATTCC 60.680 45.833 0.00 0.00 42.99 3.01
3467 8976 4.310022 TGGTTTTATCGGGATTCCTTGT 57.690 40.909 2.01 0.00 0.00 3.16
3468 8977 4.266714 TGGTTTTATCGGGATTCCTTGTC 58.733 43.478 2.01 0.00 0.00 3.18
3469 8978 4.018779 TGGTTTTATCGGGATTCCTTGTCT 60.019 41.667 2.01 0.00 0.00 3.41
3470 8979 4.575236 GGTTTTATCGGGATTCCTTGTCTC 59.425 45.833 2.01 0.00 0.00 3.36
3471 8980 5.183228 GTTTTATCGGGATTCCTTGTCTCA 58.817 41.667 2.01 0.00 0.00 3.27
3472 8981 5.630415 TTTATCGGGATTCCTTGTCTCAT 57.370 39.130 2.01 0.00 0.00 2.90
3473 8982 3.760580 ATCGGGATTCCTTGTCTCATC 57.239 47.619 2.01 0.00 0.00 2.92
3474 8983 2.752030 TCGGGATTCCTTGTCTCATCT 58.248 47.619 2.01 0.00 0.00 2.90
3475 8984 2.695666 TCGGGATTCCTTGTCTCATCTC 59.304 50.000 2.01 0.00 0.00 2.75
3476 8985 2.544694 CGGGATTCCTTGTCTCATCTCG 60.545 54.545 2.01 0.00 33.54 4.04
3478 8987 3.637229 GGGATTCCTTGTCTCATCTCGTA 59.363 47.826 2.01 0.00 0.00 3.43
3481 8990 6.015350 GGGATTCCTTGTCTCATCTCGTATTA 60.015 42.308 2.01 0.00 0.00 0.98
3483 8992 7.543868 GGATTCCTTGTCTCATCTCGTATTATG 59.456 40.741 0.00 0.00 0.00 1.90
3484 8993 6.961360 TCCTTGTCTCATCTCGTATTATGT 57.039 37.500 0.00 0.00 0.00 2.29
3485 8994 6.739112 TCCTTGTCTCATCTCGTATTATGTG 58.261 40.000 0.00 0.00 0.00 3.21
3486 8995 6.321435 TCCTTGTCTCATCTCGTATTATGTGT 59.679 38.462 0.00 0.00 0.00 3.72
3487 8996 6.980978 CCTTGTCTCATCTCGTATTATGTGTT 59.019 38.462 0.00 0.00 0.00 3.32
3488 8997 7.492669 CCTTGTCTCATCTCGTATTATGTGTTT 59.507 37.037 0.00 0.00 0.00 2.83
3490 8999 6.691388 TGTCTCATCTCGTATTATGTGTTTCG 59.309 38.462 0.00 0.00 0.00 3.46
3491 9000 6.691818 GTCTCATCTCGTATTATGTGTTTCGT 59.308 38.462 0.00 0.00 0.00 3.85
3492 9001 7.854422 GTCTCATCTCGTATTATGTGTTTCGTA 59.146 37.037 0.00 0.00 0.00 3.43
3493 9002 7.854422 TCTCATCTCGTATTATGTGTTTCGTAC 59.146 37.037 0.00 0.00 0.00 3.67
3494 9003 7.474190 TCATCTCGTATTATGTGTTTCGTACA 58.526 34.615 0.00 0.00 0.00 2.90
3495 9004 7.969508 TCATCTCGTATTATGTGTTTCGTACAA 59.030 33.333 0.00 0.00 38.80 2.41
3496 9005 8.752254 CATCTCGTATTATGTGTTTCGTACAAT 58.248 33.333 0.00 0.00 38.80 2.71
3497 9006 8.692110 TCTCGTATTATGTGTTTCGTACAATT 57.308 30.769 0.00 0.00 38.80 2.32
3498 9007 9.142515 TCTCGTATTATGTGTTTCGTACAATTT 57.857 29.630 0.00 0.00 38.80 1.82
3499 9008 9.749490 CTCGTATTATGTGTTTCGTACAATTTT 57.251 29.630 0.00 0.00 38.80 1.82
3500 9009 9.531412 TCGTATTATGTGTTTCGTACAATTTTG 57.469 29.630 0.00 0.00 38.80 2.44
3501 9010 8.781404 CGTATTATGTGTTTCGTACAATTTTGG 58.219 33.333 0.00 0.00 38.80 3.28
3502 9011 9.828852 GTATTATGTGTTTCGTACAATTTTGGA 57.171 29.630 0.00 0.00 38.80 3.53
3503 9012 8.736751 ATTATGTGTTTCGTACAATTTTGGAC 57.263 30.769 0.00 0.00 38.80 4.02
3504 9013 4.922719 TGTGTTTCGTACAATTTTGGACC 58.077 39.130 0.13 0.00 38.85 4.46
3505 9014 4.398358 TGTGTTTCGTACAATTTTGGACCA 59.602 37.500 0.13 0.00 38.85 4.02
3506 9015 5.067936 TGTGTTTCGTACAATTTTGGACCAT 59.932 36.000 0.00 0.00 38.85 3.55
3507 9016 5.401079 GTGTTTCGTACAATTTTGGACCATG 59.599 40.000 0.00 0.00 38.85 3.66
3508 9017 5.067936 TGTTTCGTACAATTTTGGACCATGT 59.932 36.000 0.00 0.00 38.85 3.21
3509 9018 4.757799 TCGTACAATTTTGGACCATGTG 57.242 40.909 8.44 1.59 38.85 3.21
3510 9019 4.390264 TCGTACAATTTTGGACCATGTGA 58.610 39.130 8.44 0.00 38.85 3.58
3511 9020 4.822350 TCGTACAATTTTGGACCATGTGAA 59.178 37.500 8.44 0.00 38.85 3.18
3512 9021 5.299531 TCGTACAATTTTGGACCATGTGAAA 59.700 36.000 8.44 0.58 38.85 2.69
3513 9022 5.980116 CGTACAATTTTGGACCATGTGAAAA 59.020 36.000 8.44 0.22 38.85 2.29
3514 9023 6.477033 CGTACAATTTTGGACCATGTGAAAAA 59.523 34.615 8.44 0.00 38.85 1.94
3515 9024 7.170658 CGTACAATTTTGGACCATGTGAAAAAT 59.829 33.333 8.44 1.87 38.85 1.82
3516 9025 9.482627 GTACAATTTTGGACCATGTGAAAAATA 57.517 29.630 8.44 0.00 35.96 1.40
3517 9026 8.970859 ACAATTTTGGACCATGTGAAAAATAA 57.029 26.923 0.00 0.00 0.00 1.40
3518 9027 9.054922 ACAATTTTGGACCATGTGAAAAATAAG 57.945 29.630 0.00 0.00 0.00 1.73
3519 9028 9.054922 CAATTTTGGACCATGTGAAAAATAAGT 57.945 29.630 0.00 0.00 0.00 2.24
3541 9050 1.547372 GGCACTTGGATGTTTGCAGAT 59.453 47.619 0.00 0.00 36.66 2.90
3542 9051 2.602878 GCACTTGGATGTTTGCAGATG 58.397 47.619 0.00 0.00 34.97 2.90
3543 9052 2.602878 CACTTGGATGTTTGCAGATGC 58.397 47.619 0.00 0.00 42.50 3.91
3553 9062 2.101770 GCAGATGCAAAGGCGAGC 59.898 61.111 0.00 0.00 45.35 5.03
3554 9063 2.404995 GCAGATGCAAAGGCGAGCT 61.405 57.895 0.00 0.00 45.35 4.09
3555 9064 1.930908 GCAGATGCAAAGGCGAGCTT 61.931 55.000 0.00 0.00 45.35 3.74
3556 9065 0.179171 CAGATGCAAAGGCGAGCTTG 60.179 55.000 0.00 0.00 45.35 4.01
3557 9066 1.138247 GATGCAAAGGCGAGCTTGG 59.862 57.895 2.37 0.00 45.35 3.61
3558 9067 1.589716 GATGCAAAGGCGAGCTTGGT 61.590 55.000 2.37 0.00 45.35 3.67
3559 9068 1.870055 ATGCAAAGGCGAGCTTGGTG 61.870 55.000 2.37 0.00 45.35 4.17
3560 9069 2.256461 CAAAGGCGAGCTTGGTGC 59.744 61.111 2.37 0.00 43.29 5.01
3561 9070 2.203337 AAAGGCGAGCTTGGTGCA 60.203 55.556 2.37 0.00 45.94 4.57
3562 9071 2.263741 AAAGGCGAGCTTGGTGCAG 61.264 57.895 2.37 0.00 45.94 4.41
3563 9072 2.680974 AAAGGCGAGCTTGGTGCAGA 62.681 55.000 2.37 0.00 45.94 4.26
3579 9088 3.013219 TGCAGACTTTGTGCAGTGTTAA 58.987 40.909 0.00 0.00 45.96 2.01
3582 9091 4.498009 GCAGACTTTGTGCAGTGTTAATGT 60.498 41.667 0.00 0.00 40.86 2.71
3597 9106 7.011016 CAGTGTTAATGTTGTGTCAGTAGTTGA 59.989 37.037 0.00 0.00 0.00 3.18
3599 9108 8.342634 GTGTTAATGTTGTGTCAGTAGTTGAAT 58.657 33.333 0.00 0.00 37.61 2.57
3636 9145 8.616076 GTTTAATAAGGTCATCAGGTGATTCAG 58.384 37.037 0.00 0.00 39.48 3.02
3641 9150 3.372206 GGTCATCAGGTGATTCAGAAACG 59.628 47.826 0.00 0.00 39.48 3.60
3642 9151 4.245660 GTCATCAGGTGATTCAGAAACGA 58.754 43.478 0.00 0.00 39.48 3.85
3650 9159 4.380867 GGTGATTCAGAAACGATGCCAAAT 60.381 41.667 0.00 0.00 0.00 2.32
3665 9174 5.226194 TGCCAAATTTTGTAATCTTGCCT 57.774 34.783 8.26 0.00 0.00 4.75
3686 9197 4.747108 CCTATTGAGTTCGGTAGCATTGAG 59.253 45.833 0.00 0.00 0.00 3.02
3687 9198 3.953712 TTGAGTTCGGTAGCATTGAGA 57.046 42.857 0.00 0.00 0.00 3.27
3688 9199 3.510388 TGAGTTCGGTAGCATTGAGAG 57.490 47.619 0.00 0.00 0.00 3.20
3689 9200 3.089284 TGAGTTCGGTAGCATTGAGAGA 58.911 45.455 0.00 0.00 0.00 3.10
3690 9201 3.129462 TGAGTTCGGTAGCATTGAGAGAG 59.871 47.826 0.00 0.00 0.00 3.20
3692 9203 3.119316 AGTTCGGTAGCATTGAGAGAGTG 60.119 47.826 0.00 0.00 0.00 3.51
3693 9204 2.447443 TCGGTAGCATTGAGAGAGTGT 58.553 47.619 0.00 0.00 0.00 3.55
3694 9205 2.826128 TCGGTAGCATTGAGAGAGTGTT 59.174 45.455 0.00 0.00 0.00 3.32
3695 9206 3.258372 TCGGTAGCATTGAGAGAGTGTTT 59.742 43.478 0.00 0.00 0.00 2.83
3696 9207 3.369147 CGGTAGCATTGAGAGAGTGTTTG 59.631 47.826 0.00 0.00 0.00 2.93
3697 9208 4.569943 GGTAGCATTGAGAGAGTGTTTGA 58.430 43.478 0.00 0.00 0.00 2.69
3698 9209 4.629200 GGTAGCATTGAGAGAGTGTTTGAG 59.371 45.833 0.00 0.00 0.00 3.02
3699 9210 4.613925 AGCATTGAGAGAGTGTTTGAGA 57.386 40.909 0.00 0.00 0.00 3.27
3700 9211 5.163281 AGCATTGAGAGAGTGTTTGAGAT 57.837 39.130 0.00 0.00 0.00 2.75
3701 9212 6.291648 AGCATTGAGAGAGTGTTTGAGATA 57.708 37.500 0.00 0.00 0.00 1.98
3702 9213 6.705302 AGCATTGAGAGAGTGTTTGAGATAA 58.295 36.000 0.00 0.00 0.00 1.75
3703 9214 7.164122 AGCATTGAGAGAGTGTTTGAGATAAA 58.836 34.615 0.00 0.00 0.00 1.40
3704 9215 7.828223 AGCATTGAGAGAGTGTTTGAGATAAAT 59.172 33.333 0.00 0.00 0.00 1.40
3705 9216 9.102757 GCATTGAGAGAGTGTTTGAGATAAATA 57.897 33.333 0.00 0.00 0.00 1.40
3709 9220 9.645059 TGAGAGAGTGTTTGAGATAAATAGTTG 57.355 33.333 0.00 0.00 0.00 3.16
3710 9221 9.862371 GAGAGAGTGTTTGAGATAAATAGTTGA 57.138 33.333 0.00 0.00 0.00 3.18
3711 9222 9.646427 AGAGAGTGTTTGAGATAAATAGTTGAC 57.354 33.333 0.00 0.00 0.00 3.18
3712 9223 9.424319 GAGAGTGTTTGAGATAAATAGTTGACA 57.576 33.333 0.00 0.00 0.00 3.58
3713 9224 9.429359 AGAGTGTTTGAGATAAATAGTTGACAG 57.571 33.333 0.00 0.00 0.00 3.51
3714 9225 9.424319 GAGTGTTTGAGATAAATAGTTGACAGA 57.576 33.333 0.00 0.00 0.00 3.41
3715 9226 9.778741 AGTGTTTGAGATAAATAGTTGACAGAA 57.221 29.630 0.00 0.00 0.00 3.02
3716 9227 9.813080 GTGTTTGAGATAAATAGTTGACAGAAC 57.187 33.333 0.00 0.00 0.00 3.01
3717 9228 9.554395 TGTTTGAGATAAATAGTTGACAGAACA 57.446 29.630 0.00 0.00 0.00 3.18
3718 9229 9.813080 GTTTGAGATAAATAGTTGACAGAACAC 57.187 33.333 0.00 0.00 0.00 3.32
3719 9230 9.778741 TTTGAGATAAATAGTTGACAGAACACT 57.221 29.630 0.00 0.00 0.00 3.55
3720 9231 9.778741 TTGAGATAAATAGTTGACAGAACACTT 57.221 29.630 0.00 0.00 0.00 3.16
3777 9289 5.116882 AGTTCAGTCTCACGTTAAGCTTTT 58.883 37.500 3.20 0.00 0.00 2.27
3805 9319 3.944055 ACAGTCTCACGTTAAGCTGAT 57.056 42.857 17.93 6.99 0.00 2.90
3807 9321 3.255888 ACAGTCTCACGTTAAGCTGATCA 59.744 43.478 17.93 0.00 0.00 2.92
3938 9482 6.917217 TGGTTCACAATTTTCATTTCCAAC 57.083 33.333 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.188434 TGAAGTGAAGGAGAGGCAAATATG 58.812 41.667 0.00 0.00 0.00 1.78
97 98 5.240844 CCAATTCGTTGTTAGAGGGAAAGTT 59.759 40.000 0.00 0.00 0.00 2.66
98 99 4.760204 CCAATTCGTTGTTAGAGGGAAAGT 59.240 41.667 0.00 0.00 0.00 2.66
859 864 2.946990 ACGCGGTTAAAAGGGATTATGG 59.053 45.455 12.47 0.00 0.00 2.74
862 867 2.027377 TGGACGCGGTTAAAAGGGATTA 60.027 45.455 12.47 0.00 0.00 1.75
882 887 1.669795 GCGCCCAATTTCAAAGGTCTG 60.670 52.381 0.00 0.00 0.00 3.51
914 919 1.134788 AGAAATAGCGGGAACTGACGG 60.135 52.381 0.00 0.00 36.31 4.79
945 950 2.092375 AGGGATTCGGGAGATTGGTTTC 60.092 50.000 0.00 0.00 39.57 2.78
977 982 1.450312 GTGGCGGTGAGATTGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
1027 1032 1.004161 TCCATTGATTCACAGCGGGAA 59.996 47.619 0.00 0.00 0.00 3.97
1107 1114 0.770499 TGGTGGTTCTTGCTCATCCA 59.230 50.000 0.00 0.00 0.00 3.41
1180 1187 2.675423 CACAGGAGGTCGTCGGGA 60.675 66.667 0.00 0.00 0.00 5.14
1294 1301 1.681793 GAGAGGCTATAGTCGGCAACA 59.318 52.381 0.84 0.00 0.00 3.33
1297 1304 0.539901 GGGAGAGGCTATAGTCGGCA 60.540 60.000 0.84 0.00 0.00 5.69
1337 1344 3.438781 GCGAGGATCTTCGAGATGTAGAT 59.561 47.826 29.01 0.00 43.03 1.98
1472 1479 3.766691 GGGTCCGTAGCCGAAGCA 61.767 66.667 0.00 0.00 43.56 3.91
1510 6899 3.550431 CAGATGGGACGGCGGGAT 61.550 66.667 13.24 0.00 0.00 3.85
1523 6912 2.443952 TCGGGGTCATCGGCAGAT 60.444 61.111 0.00 0.00 37.65 2.90
1531 6920 3.075005 CGAGGGTGTCGGGGTCAT 61.075 66.667 0.00 0.00 45.58 3.06
1541 6930 0.460311 GGACTGTGGTATCGAGGGTG 59.540 60.000 0.00 0.00 0.00 4.61
1542 6931 1.035932 CGGACTGTGGTATCGAGGGT 61.036 60.000 0.00 0.00 0.00 4.34
1543 6932 1.734137 CGGACTGTGGTATCGAGGG 59.266 63.158 0.00 0.00 0.00 4.30
1544 6933 1.065928 GCGGACTGTGGTATCGAGG 59.934 63.158 0.00 0.00 0.00 4.63
1545 6934 1.298413 CGCGGACTGTGGTATCGAG 60.298 63.158 0.00 0.00 0.00 4.04
1546 6935 2.795973 CGCGGACTGTGGTATCGA 59.204 61.111 0.00 0.00 0.00 3.59
1547 6936 2.954868 GCGCGGACTGTGGTATCG 60.955 66.667 8.83 0.00 0.00 2.92
1548 6937 1.589196 GAGCGCGGACTGTGGTATC 60.589 63.158 8.83 0.00 39.30 2.24
1549 6938 2.494918 GAGCGCGGACTGTGGTAT 59.505 61.111 8.83 0.00 39.30 2.73
1630 7019 4.646572 AGAAGCGGAAAATTCAGAGACTT 58.353 39.130 0.00 0.00 0.00 3.01
1649 7038 1.271217 ACATGCTGAGCTGCTTGAGAA 60.271 47.619 15.99 0.00 39.50 2.87
1673 7062 0.898320 CAAGTCCGAGATGGTGACCT 59.102 55.000 2.11 0.00 39.52 3.85
1742 7131 3.083997 GCCCCGAGATGGTGACCT 61.084 66.667 2.11 0.00 35.15 3.85
1759 7148 2.554775 CAAGCTGTGCAGAGCGTG 59.445 61.111 30.88 30.88 44.24 5.34
1789 7178 4.821805 CAGTAAGAGGCTTTCCAGTGAAAA 59.178 41.667 0.00 0.00 39.88 2.29
1827 7216 4.206375 TCAGCTCATGACAACCAGAAAAA 58.794 39.130 0.00 0.00 31.12 1.94
1831 7220 2.568509 TGATCAGCTCATGACAACCAGA 59.431 45.455 0.00 0.00 41.91 3.86
1834 7223 2.543012 CGATGATCAGCTCATGACAACC 59.457 50.000 9.64 0.00 44.83 3.77
1836 7225 3.492137 CCTCGATGATCAGCTCATGACAA 60.492 47.826 9.64 0.00 44.83 3.18
1837 7226 2.035576 CCTCGATGATCAGCTCATGACA 59.964 50.000 9.64 0.00 44.83 3.58
1838 7227 2.295629 TCCTCGATGATCAGCTCATGAC 59.704 50.000 9.64 0.00 44.83 3.06
1839 7228 2.590821 TCCTCGATGATCAGCTCATGA 58.409 47.619 9.64 0.00 44.83 3.07
1842 7300 1.000618 GCATCCTCGATGATCAGCTCA 59.999 52.381 9.64 0.00 42.09 4.26
1881 7339 1.217779 GTCTGGAGAGAGTGGCAGC 59.782 63.158 0.00 0.00 0.00 5.25
1895 7353 1.678627 CTGTCGAGGGACCATAGTCTG 59.321 57.143 0.00 0.00 42.73 3.51
1898 7356 1.685491 GGACTGTCGAGGGACCATAGT 60.685 57.143 1.07 0.00 42.73 2.12
1911 7369 2.429971 TGCTCTGATGATCTGGACTGTC 59.570 50.000 0.00 0.00 0.00 3.51
2021 7485 9.538508 TGTATGATTTCAGATTACATGACTCTG 57.461 33.333 0.00 8.52 38.18 3.35
2081 7545 9.430623 TGACAGATCGAAATAAGAACAATAACA 57.569 29.630 0.00 0.00 0.00 2.41
2096 7560 5.793817 TCCTGAAGAAAATGACAGATCGAA 58.206 37.500 0.00 0.00 32.90 3.71
2098 7562 6.486253 TTTCCTGAAGAAAATGACAGATCG 57.514 37.500 0.00 0.00 41.56 3.69
2134 7598 1.603456 TTGCATGATGGTTGTCACGT 58.397 45.000 0.00 0.00 0.00 4.49
2135 7599 2.318578 GTTTGCATGATGGTTGTCACG 58.681 47.619 0.00 0.00 0.00 4.35
2153 7617 4.575645 TCGATAACCAAAAACTTCACGGTT 59.424 37.500 0.00 0.00 42.47 4.44
2156 7620 5.176958 AGAGTCGATAACCAAAAACTTCACG 59.823 40.000 0.00 0.00 0.00 4.35
2159 7623 6.541111 ACAGAGTCGATAACCAAAAACTTC 57.459 37.500 0.00 0.00 0.00 3.01
2174 7638 0.460987 GATCAGGGCCAACAGAGTCG 60.461 60.000 6.18 0.00 0.00 4.18
2178 7642 1.361204 TTGAGATCAGGGCCAACAGA 58.639 50.000 6.18 0.00 0.00 3.41
2180 7644 1.956636 GCATTGAGATCAGGGCCAACA 60.957 52.381 6.18 0.00 0.00 3.33
2195 7659 3.444742 TGAGGAAGCCAATTACTGCATTG 59.555 43.478 0.00 0.00 29.49 2.82
2196 7660 3.700538 TGAGGAAGCCAATTACTGCATT 58.299 40.909 0.00 0.00 29.49 3.56
2232 7696 7.176515 ACTCACAATGATATACAGCCTCTCTAG 59.823 40.741 0.00 0.00 0.00 2.43
2261 7725 6.842163 ACAATTAAAACAAGCAGAGATACGG 58.158 36.000 0.00 0.00 0.00 4.02
2263 7727 7.483059 GCTGACAATTAAAACAAGCAGAGATAC 59.517 37.037 0.00 0.00 0.00 2.24
2269 7733 5.693104 ACATGCTGACAATTAAAACAAGCAG 59.307 36.000 0.00 0.00 33.20 4.24
2270 7734 5.462729 CACATGCTGACAATTAAAACAAGCA 59.537 36.000 0.00 0.00 0.00 3.91
2271 7735 5.613142 GCACATGCTGACAATTAAAACAAGC 60.613 40.000 0.00 0.00 38.21 4.01
2272 7736 5.908106 GCACATGCTGACAATTAAAACAAG 58.092 37.500 0.00 0.00 38.21 3.16
2273 7737 5.903764 GCACATGCTGACAATTAAAACAA 57.096 34.783 0.00 0.00 38.21 2.83
2309 7773 2.597455 AGGCAATGTAAAGGCAGTTGT 58.403 42.857 0.00 0.00 0.00 3.32
2326 7790 4.384940 GACTGGAGATGGAAAGAATAGGC 58.615 47.826 0.00 0.00 0.00 3.93
2327 7791 4.626042 CGACTGGAGATGGAAAGAATAGG 58.374 47.826 0.00 0.00 0.00 2.57
2355 7819 4.622740 CGCACATTTTTCATTCCTTTCCTC 59.377 41.667 0.00 0.00 0.00 3.71
2356 7820 4.280677 TCGCACATTTTTCATTCCTTTCCT 59.719 37.500 0.00 0.00 0.00 3.36
2389 7853 1.406539 GCATTCAATTGGATCCAGCGT 59.593 47.619 15.53 2.41 0.00 5.07
2390 7854 1.269413 GGCATTCAATTGGATCCAGCG 60.269 52.381 15.53 7.64 0.00 5.18
2511 7975 8.877864 TGTTGAGGGTTCTAAATATCATTTGT 57.122 30.769 0.00 0.00 0.00 2.83
2525 7989 1.068055 CATTGCAGCTGTTGAGGGTTC 60.068 52.381 16.64 0.00 0.00 3.62
2547 8011 6.514541 GCCTATGTTGATCAGACATCCATTTG 60.515 42.308 19.90 9.66 38.58 2.32
2581 8045 4.348486 TCTAGAGAAGCTCTGTTGTCCAT 58.652 43.478 7.19 0.00 41.37 3.41
2602 8066 5.323900 TCGTTTGAATTCAAATCGAGCATC 58.676 37.500 31.61 20.24 46.12 3.91
2617 8081 4.823157 TCCCGACAGAAATATCGTTTGAA 58.177 39.130 0.00 0.00 0.00 2.69
2623 8087 3.067106 CCCAATCCCGACAGAAATATCG 58.933 50.000 0.00 0.00 0.00 2.92
2625 8089 2.443255 AGCCCAATCCCGACAGAAATAT 59.557 45.455 0.00 0.00 0.00 1.28
2631 8095 1.750399 CCAAGCCCAATCCCGACAG 60.750 63.158 0.00 0.00 0.00 3.51
2632 8096 2.075355 AACCAAGCCCAATCCCGACA 62.075 55.000 0.00 0.00 0.00 4.35
2638 8102 0.608035 TCGTGGAACCAAGCCCAATC 60.608 55.000 2.10 0.00 33.69 2.67
2640 8104 0.693622 TATCGTGGAACCAAGCCCAA 59.306 50.000 2.10 0.00 33.69 4.12
2644 8108 2.414161 GCTTGTTATCGTGGAACCAAGC 60.414 50.000 6.45 6.45 35.66 4.01
2645 8109 2.811431 TGCTTGTTATCGTGGAACCAAG 59.189 45.455 0.00 0.00 0.00 3.61
2647 8111 2.552599 TGCTTGTTATCGTGGAACCA 57.447 45.000 0.00 0.00 0.00 3.67
2648 8112 3.311596 GGTATGCTTGTTATCGTGGAACC 59.688 47.826 0.00 0.00 0.00 3.62
2649 8113 3.311596 GGGTATGCTTGTTATCGTGGAAC 59.688 47.826 0.00 0.00 0.00 3.62
2653 8117 4.126437 TCATGGGTATGCTTGTTATCGTG 58.874 43.478 0.00 0.00 34.21 4.35
2654 8118 4.415881 TCATGGGTATGCTTGTTATCGT 57.584 40.909 0.00 0.00 34.21 3.73
2655 8119 5.947228 AATCATGGGTATGCTTGTTATCG 57.053 39.130 0.00 0.00 34.21 2.92
2716 8180 0.038166 ATGCCGTGTCAAAGGATGGT 59.962 50.000 0.08 0.00 0.00 3.55
2717 8181 0.452987 CATGCCGTGTCAAAGGATGG 59.547 55.000 0.08 0.00 0.00 3.51
2724 8188 0.035534 ATAGTGGCATGCCGTGTCAA 60.036 50.000 30.87 10.37 45.54 3.18
2725 8189 0.827368 TATAGTGGCATGCCGTGTCA 59.173 50.000 30.87 11.18 40.91 3.58
2726 8190 1.800586 CATATAGTGGCATGCCGTGTC 59.199 52.381 30.87 19.99 39.42 3.67
2727 8191 1.140852 ACATATAGTGGCATGCCGTGT 59.859 47.619 30.87 22.51 39.42 4.49
2728 8192 1.800586 GACATATAGTGGCATGCCGTG 59.199 52.381 30.87 21.93 39.42 4.94
2729 8193 1.694150 AGACATATAGTGGCATGCCGT 59.306 47.619 30.87 22.72 38.81 5.68
2730 8194 2.071540 CAGACATATAGTGGCATGCCG 58.928 52.381 30.87 17.27 38.81 5.69
2731 8195 2.224621 ACCAGACATATAGTGGCATGCC 60.225 50.000 30.54 30.54 38.81 4.40
2732 8196 3.070018 GACCAGACATATAGTGGCATGC 58.930 50.000 9.90 9.90 38.81 4.06
2733 8197 4.313282 CAGACCAGACATATAGTGGCATG 58.687 47.826 0.00 0.00 38.81 4.06
2734 8198 3.326006 CCAGACCAGACATATAGTGGCAT 59.674 47.826 0.00 0.00 38.81 4.40
2735 8199 2.700371 CCAGACCAGACATATAGTGGCA 59.300 50.000 0.00 0.00 38.81 4.92
2736 8200 2.548920 GCCAGACCAGACATATAGTGGC 60.549 54.545 0.00 0.00 42.26 5.01
2737 8201 2.968574 AGCCAGACCAGACATATAGTGG 59.031 50.000 0.00 0.00 37.38 4.00
2738 8202 4.343526 AGAAGCCAGACCAGACATATAGTG 59.656 45.833 0.00 0.00 0.00 2.74
2739 8203 4.551671 AGAAGCCAGACCAGACATATAGT 58.448 43.478 0.00 0.00 0.00 2.12
2740 8204 5.543507 AAGAAGCCAGACCAGACATATAG 57.456 43.478 0.00 0.00 0.00 1.31
2741 8205 5.957771 AAAGAAGCCAGACCAGACATATA 57.042 39.130 0.00 0.00 0.00 0.86
2742 8206 4.851639 AAAGAAGCCAGACCAGACATAT 57.148 40.909 0.00 0.00 0.00 1.78
2743 8207 4.202461 ACAAAAGAAGCCAGACCAGACATA 60.202 41.667 0.00 0.00 0.00 2.29
2744 8208 3.152341 CAAAAGAAGCCAGACCAGACAT 58.848 45.455 0.00 0.00 0.00 3.06
2745 8209 2.092429 ACAAAAGAAGCCAGACCAGACA 60.092 45.455 0.00 0.00 0.00 3.41
2746 8210 2.576615 ACAAAAGAAGCCAGACCAGAC 58.423 47.619 0.00 0.00 0.00 3.51
2747 8211 3.391296 ACTACAAAAGAAGCCAGACCAGA 59.609 43.478 0.00 0.00 0.00 3.86
2748 8212 3.744660 ACTACAAAAGAAGCCAGACCAG 58.255 45.455 0.00 0.00 0.00 4.00
2752 8216 5.885912 ACTTCAAACTACAAAAGAAGCCAGA 59.114 36.000 0.00 0.00 39.33 3.86
2756 8220 7.808381 GGGATAACTTCAAACTACAAAAGAAGC 59.192 37.037 0.00 0.00 39.33 3.86
2792 8258 0.320247 AGCACAGCCGAACAGAGAAG 60.320 55.000 0.00 0.00 0.00 2.85
2887 8353 5.595885 ACATGCAGTACAGAAGCATAGTAG 58.404 41.667 12.59 5.82 46.39 2.57
2949 8415 0.593128 CTCAAACACAGCGGAAAGGG 59.407 55.000 0.00 0.00 0.00 3.95
2951 8417 1.670811 ACACTCAAACACAGCGGAAAG 59.329 47.619 0.00 0.00 0.00 2.62
2992 8458 5.757850 AGAAAAGAAAACACTACAGCCTG 57.242 39.130 0.00 0.00 0.00 4.85
3016 8489 9.844790 CAGCTTACAATATGACATCAAAAAGAA 57.155 29.630 0.00 0.00 0.00 2.52
3018 8491 9.630098 AACAGCTTACAATATGACATCAAAAAG 57.370 29.630 0.00 0.00 0.00 2.27
3033 8509 5.871834 ACTGGTGGTATAAACAGCTTACAA 58.128 37.500 8.70 0.00 37.25 2.41
3040 8522 5.488341 AGTGCTAACTGGTGGTATAAACAG 58.512 41.667 0.00 0.00 34.48 3.16
3069 8555 5.413309 ACTGAAGCTAGTGTAGAAGCATT 57.587 39.130 0.00 0.00 41.32 3.56
3072 8558 7.835634 AATTTACTGAAGCTAGTGTAGAAGC 57.164 36.000 0.00 0.00 39.08 3.86
3081 8567 5.685728 AGGCCCTAAATTTACTGAAGCTAG 58.314 41.667 0.00 0.00 0.00 3.42
3083 8569 4.592997 AGGCCCTAAATTTACTGAAGCT 57.407 40.909 0.00 0.00 0.00 3.74
3114 8600 4.839668 TTGGTTCGTGGGACAAAAATAG 57.160 40.909 0.00 0.00 44.16 1.73
3115 8601 4.202131 GGTTTGGTTCGTGGGACAAAAATA 60.202 41.667 0.00 0.00 44.16 1.40
3116 8602 3.431068 GGTTTGGTTCGTGGGACAAAAAT 60.431 43.478 0.00 0.00 44.16 1.82
3117 8603 2.094130 GGTTTGGTTCGTGGGACAAAAA 60.094 45.455 0.00 0.00 44.16 1.94
3122 8608 0.596082 CATGGTTTGGTTCGTGGGAC 59.404 55.000 0.00 0.00 0.00 4.46
3124 8610 1.898902 TACATGGTTTGGTTCGTGGG 58.101 50.000 0.00 0.00 0.00 4.61
3126 8612 3.485947 CCATACATGGTTTGGTTCGTG 57.514 47.619 0.00 0.00 43.05 4.35
3142 8628 4.638421 CGTGGACAGGAAAAATAAGCCATA 59.362 41.667 0.00 0.00 0.00 2.74
3158 8644 6.706716 TGAAACAATAACAGTATTCGTGGACA 59.293 34.615 0.00 0.00 0.00 4.02
3164 8650 7.463544 TGCTGATGAAACAATAACAGTATTCG 58.536 34.615 0.00 0.00 0.00 3.34
3165 8651 9.793252 ATTGCTGATGAAACAATAACAGTATTC 57.207 29.630 0.00 0.00 32.42 1.75
3170 8656 8.246180 ACCTAATTGCTGATGAAACAATAACAG 58.754 33.333 0.00 0.00 33.01 3.16
3172 8658 8.243426 TGACCTAATTGCTGATGAAACAATAAC 58.757 33.333 0.00 0.00 33.01 1.89
3175 8661 6.839124 TGACCTAATTGCTGATGAAACAAT 57.161 33.333 0.00 0.00 35.59 2.71
3214 8701 7.437713 AGTATCACTCAATCTCCATAAACCA 57.562 36.000 0.00 0.00 0.00 3.67
3234 8721 7.603180 TTTAGTGGATCATGACAGCTAGTAT 57.397 36.000 0.00 0.00 0.00 2.12
3237 8724 6.782298 CATTTAGTGGATCATGACAGCTAG 57.218 41.667 0.00 0.00 0.00 3.42
3268 8755 5.473846 ACAGAAAGACGAGTCATGAGAACTA 59.526 40.000 0.00 0.00 0.00 2.24
3272 8759 3.612717 GCACAGAAAGACGAGTCATGAGA 60.613 47.826 0.00 0.00 0.00 3.27
3280 8767 3.885484 ACAAATGCACAGAAAGACGAG 57.115 42.857 0.00 0.00 0.00 4.18
3286 8773 6.272318 CAAAGTAGGAACAAATGCACAGAAA 58.728 36.000 0.00 0.00 0.00 2.52
3296 8783 2.955660 CTGCCACCAAAGTAGGAACAAA 59.044 45.455 0.00 0.00 0.00 2.83
3305 8792 1.478654 CCACCTAACTGCCACCAAAGT 60.479 52.381 0.00 0.00 0.00 2.66
3309 8796 2.434331 GCCACCTAACTGCCACCA 59.566 61.111 0.00 0.00 0.00 4.17
3310 8797 2.746277 CGCCACCTAACTGCCACC 60.746 66.667 0.00 0.00 0.00 4.61
3313 8800 2.038837 GTTCCGCCACCTAACTGCC 61.039 63.158 0.00 0.00 0.00 4.85
3320 8807 0.469144 AAACCAATGTTCCGCCACCT 60.469 50.000 0.00 0.00 32.15 4.00
3322 8809 2.232756 AAAAACCAATGTTCCGCCAC 57.767 45.000 0.00 0.00 32.15 5.01
3351 8838 3.863424 TGAAGAAACAACACTCACGAGAC 59.137 43.478 0.00 0.00 0.00 3.36
3356 8843 2.682856 TGGCTGAAGAAACAACACTCAC 59.317 45.455 0.00 0.00 0.00 3.51
3363 8850 3.761218 TCACAAGTTGGCTGAAGAAACAA 59.239 39.130 7.96 0.00 0.00 2.83
3373 8860 1.546323 CCCATCTGTCACAAGTTGGCT 60.546 52.381 7.96 0.00 36.21 4.75
3397 8906 3.650942 TGAGTGTAAATCTCAAGGTGGGT 59.349 43.478 0.00 0.00 38.71 4.51
3429 8938 5.357742 AAACCAAAAGGCTTCATCAAAGT 57.642 34.783 0.00 0.00 37.31 2.66
3442 8951 5.914898 AGGAATCCCGATAAAACCAAAAG 57.085 39.130 0.00 0.00 37.58 2.27
3456 8965 2.432510 ACGAGATGAGACAAGGAATCCC 59.567 50.000 0.00 0.00 0.00 3.85
3462 8971 6.507900 ACACATAATACGAGATGAGACAAGG 58.492 40.000 0.00 0.00 0.00 3.61
3463 8972 7.993821 AACACATAATACGAGATGAGACAAG 57.006 36.000 0.00 0.00 0.00 3.16
3467 8976 6.792326 ACGAAACACATAATACGAGATGAGA 58.208 36.000 0.00 0.00 0.00 3.27
3468 8977 7.642586 TGTACGAAACACATAATACGAGATGAG 59.357 37.037 0.00 0.00 31.43 2.90
3469 8978 7.474190 TGTACGAAACACATAATACGAGATGA 58.526 34.615 0.00 0.00 31.43 2.92
3470 8979 7.673810 TGTACGAAACACATAATACGAGATG 57.326 36.000 0.00 0.00 31.43 2.90
3471 8980 8.867112 ATTGTACGAAACACATAATACGAGAT 57.133 30.769 0.00 0.00 38.00 2.75
3472 8981 8.692110 AATTGTACGAAACACATAATACGAGA 57.308 30.769 0.00 0.00 38.00 4.04
3473 8982 9.749490 AAAATTGTACGAAACACATAATACGAG 57.251 29.630 0.00 0.00 38.00 4.18
3474 8983 9.531412 CAAAATTGTACGAAACACATAATACGA 57.469 29.630 0.00 0.00 38.00 3.43
3475 8984 8.781404 CCAAAATTGTACGAAACACATAATACG 58.219 33.333 0.00 0.00 38.00 3.06
3476 8985 9.828852 TCCAAAATTGTACGAAACACATAATAC 57.171 29.630 0.00 0.00 38.00 1.89
3478 8987 7.810759 GGTCCAAAATTGTACGAAACACATAAT 59.189 33.333 0.00 0.00 38.00 1.28
3481 8990 5.067936 TGGTCCAAAATTGTACGAAACACAT 59.932 36.000 0.00 0.00 38.00 3.21
3483 8992 4.922719 TGGTCCAAAATTGTACGAAACAC 58.077 39.130 0.00 0.00 38.00 3.32
3484 8993 5.067936 ACATGGTCCAAAATTGTACGAAACA 59.932 36.000 0.00 0.00 35.88 2.83
3485 8994 5.401079 CACATGGTCCAAAATTGTACGAAAC 59.599 40.000 0.00 0.00 0.00 2.78
3486 8995 5.299531 TCACATGGTCCAAAATTGTACGAAA 59.700 36.000 0.00 0.00 0.00 3.46
3487 8996 4.822350 TCACATGGTCCAAAATTGTACGAA 59.178 37.500 0.00 0.00 0.00 3.85
3488 8997 4.390264 TCACATGGTCCAAAATTGTACGA 58.610 39.130 0.00 0.00 0.00 3.43
3490 8999 7.778470 TTTTTCACATGGTCCAAAATTGTAC 57.222 32.000 0.00 0.00 0.00 2.90
3492 9001 8.970859 TTATTTTTCACATGGTCCAAAATTGT 57.029 26.923 0.00 0.00 31.25 2.71
3493 9002 9.054922 ACTTATTTTTCACATGGTCCAAAATTG 57.945 29.630 0.00 0.00 31.25 2.32
3494 9003 9.271828 GACTTATTTTTCACATGGTCCAAAATT 57.728 29.630 0.00 0.00 31.25 1.82
3495 9004 7.598493 CGACTTATTTTTCACATGGTCCAAAAT 59.402 33.333 0.00 0.00 32.95 1.82
3496 9005 6.920758 CGACTTATTTTTCACATGGTCCAAAA 59.079 34.615 0.00 0.00 0.00 2.44
3497 9006 6.442952 CGACTTATTTTTCACATGGTCCAAA 58.557 36.000 0.00 0.00 0.00 3.28
3498 9007 5.048364 CCGACTTATTTTTCACATGGTCCAA 60.048 40.000 0.00 0.00 0.00 3.53
3499 9008 4.457603 CCGACTTATTTTTCACATGGTCCA 59.542 41.667 0.00 0.00 0.00 4.02
3500 9009 4.674362 GCCGACTTATTTTTCACATGGTCC 60.674 45.833 0.00 0.00 0.00 4.46
3501 9010 4.083003 TGCCGACTTATTTTTCACATGGTC 60.083 41.667 0.00 0.00 0.00 4.02
3502 9011 3.823873 TGCCGACTTATTTTTCACATGGT 59.176 39.130 0.00 0.00 0.00 3.55
3503 9012 4.082787 AGTGCCGACTTATTTTTCACATGG 60.083 41.667 0.00 0.00 0.00 3.66
3504 9013 5.046910 AGTGCCGACTTATTTTTCACATG 57.953 39.130 0.00 0.00 0.00 3.21
3505 9014 5.460646 CAAGTGCCGACTTATTTTTCACAT 58.539 37.500 0.00 0.00 40.68 3.21
3506 9015 4.261405 CCAAGTGCCGACTTATTTTTCACA 60.261 41.667 0.00 0.00 40.68 3.58
3507 9016 4.023536 TCCAAGTGCCGACTTATTTTTCAC 60.024 41.667 0.00 0.00 40.68 3.18
3508 9017 4.138290 TCCAAGTGCCGACTTATTTTTCA 58.862 39.130 0.00 0.00 40.68 2.69
3509 9018 4.759516 TCCAAGTGCCGACTTATTTTTC 57.240 40.909 0.00 0.00 40.68 2.29
3510 9019 4.522789 ACATCCAAGTGCCGACTTATTTTT 59.477 37.500 0.00 0.00 40.68 1.94
3511 9020 4.079253 ACATCCAAGTGCCGACTTATTTT 58.921 39.130 0.00 0.00 40.68 1.82
3512 9021 3.686016 ACATCCAAGTGCCGACTTATTT 58.314 40.909 0.00 0.00 40.68 1.40
3513 9022 3.350219 ACATCCAAGTGCCGACTTATT 57.650 42.857 0.00 0.00 40.68 1.40
3514 9023 3.350219 AACATCCAAGTGCCGACTTAT 57.650 42.857 0.00 0.00 40.68 1.73
3515 9024 2.811431 CAAACATCCAAGTGCCGACTTA 59.189 45.455 0.00 0.00 40.68 2.24
3516 9025 1.608590 CAAACATCCAAGTGCCGACTT 59.391 47.619 0.00 0.00 43.63 3.01
3517 9026 1.238439 CAAACATCCAAGTGCCGACT 58.762 50.000 0.00 0.00 0.00 4.18
3518 9027 0.387239 GCAAACATCCAAGTGCCGAC 60.387 55.000 0.00 0.00 0.00 4.79
3519 9028 0.821301 TGCAAACATCCAAGTGCCGA 60.821 50.000 0.00 0.00 36.12 5.54
3541 9050 2.203337 ACCAAGCTCGCCTTTGCA 60.203 55.556 0.00 0.00 37.32 4.08
3542 9051 2.256461 CACCAAGCTCGCCTTTGC 59.744 61.111 0.00 0.00 0.00 3.68
3543 9052 2.256461 GCACCAAGCTCGCCTTTG 59.744 61.111 0.00 0.00 41.15 2.77
3544 9053 2.203337 TGCACCAAGCTCGCCTTT 60.203 55.556 0.00 0.00 45.94 3.11
3545 9054 2.670934 CTGCACCAAGCTCGCCTT 60.671 61.111 0.00 0.00 45.94 4.35
3546 9055 3.630013 TCTGCACCAAGCTCGCCT 61.630 61.111 0.00 0.00 45.94 5.52
3547 9056 3.426568 GTCTGCACCAAGCTCGCC 61.427 66.667 0.00 0.00 45.94 5.54
3548 9057 1.510480 AAAGTCTGCACCAAGCTCGC 61.510 55.000 0.00 0.00 45.94 5.03
3549 9058 0.236711 CAAAGTCTGCACCAAGCTCG 59.763 55.000 0.00 0.00 45.94 5.03
3550 9059 1.002033 CACAAAGTCTGCACCAAGCTC 60.002 52.381 0.00 0.00 45.94 4.09
3551 9060 1.027357 CACAAAGTCTGCACCAAGCT 58.973 50.000 0.00 0.00 45.94 3.74
3552 9061 0.595825 GCACAAAGTCTGCACCAAGC 60.596 55.000 0.00 0.00 45.96 4.01
3553 9062 0.740149 TGCACAAAGTCTGCACCAAG 59.260 50.000 0.00 0.00 39.76 3.61
3554 9063 0.740149 CTGCACAAAGTCTGCACCAA 59.260 50.000 0.00 0.00 39.76 3.67
3555 9064 0.394216 ACTGCACAAAGTCTGCACCA 60.394 50.000 0.00 0.00 39.76 4.17
3556 9065 0.029834 CACTGCACAAAGTCTGCACC 59.970 55.000 0.00 0.00 39.76 5.01
3557 9066 0.734889 ACACTGCACAAAGTCTGCAC 59.265 50.000 0.00 0.00 39.76 4.57
3558 9067 1.462616 AACACTGCACAAAGTCTGCA 58.537 45.000 0.00 0.00 42.42 4.41
3559 9068 3.691049 TTAACACTGCACAAAGTCTGC 57.309 42.857 0.00 0.00 35.03 4.26
3560 9069 5.173774 ACATTAACACTGCACAAAGTCTG 57.826 39.130 0.00 0.00 0.00 3.51
3561 9070 5.125417 ACAACATTAACACTGCACAAAGTCT 59.875 36.000 0.00 0.00 0.00 3.24
3562 9071 5.229887 CACAACATTAACACTGCACAAAGTC 59.770 40.000 0.00 0.00 0.00 3.01
3563 9072 5.101628 CACAACATTAACACTGCACAAAGT 58.898 37.500 0.00 0.00 0.00 2.66
3573 9082 7.241663 TCAACTACTGACACAACATTAACAC 57.758 36.000 0.00 0.00 0.00 3.32
3579 9088 5.822519 ACACATTCAACTACTGACACAACAT 59.177 36.000 0.00 0.00 32.21 2.71
3582 9091 5.423886 TCACACATTCAACTACTGACACAA 58.576 37.500 0.00 0.00 32.21 3.33
3597 9106 9.241919 TGACCTTATTAAACATGATCACACATT 57.758 29.630 0.00 0.00 0.00 2.71
3599 9108 8.806429 ATGACCTTATTAAACATGATCACACA 57.194 30.769 0.00 0.00 0.00 3.72
3636 9145 7.581011 AGATTACAAAATTTGGCATCGTTTC 57.419 32.000 10.71 0.00 31.85 2.78
3641 9150 5.876460 AGGCAAGATTACAAAATTTGGCATC 59.124 36.000 10.71 10.23 38.97 3.91
3642 9151 5.807909 AGGCAAGATTACAAAATTTGGCAT 58.192 33.333 10.71 1.36 38.97 4.40
3650 9159 7.361713 CCGAACTCAATAGGCAAGATTACAAAA 60.362 37.037 0.00 0.00 0.00 2.44
3665 9174 5.359860 TCTCTCAATGCTACCGAACTCAATA 59.640 40.000 0.00 0.00 0.00 1.90
3686 9197 9.424319 TGTCAACTATTTATCTCAAACACTCTC 57.576 33.333 0.00 0.00 0.00 3.20
3687 9198 9.429359 CTGTCAACTATTTATCTCAAACACTCT 57.571 33.333 0.00 0.00 0.00 3.24
3688 9199 9.424319 TCTGTCAACTATTTATCTCAAACACTC 57.576 33.333 0.00 0.00 0.00 3.51
3689 9200 9.778741 TTCTGTCAACTATTTATCTCAAACACT 57.221 29.630 0.00 0.00 0.00 3.55
3690 9201 9.813080 GTTCTGTCAACTATTTATCTCAAACAC 57.187 33.333 0.00 0.00 0.00 3.32
3692 9203 9.813080 GTGTTCTGTCAACTATTTATCTCAAAC 57.187 33.333 0.00 0.00 0.00 2.93
3693 9204 9.778741 AGTGTTCTGTCAACTATTTATCTCAAA 57.221 29.630 0.00 0.00 0.00 2.69
3694 9205 9.778741 AAGTGTTCTGTCAACTATTTATCTCAA 57.221 29.630 0.00 0.00 0.00 3.02
3717 9228 4.220693 TCATACTGCAGGCACATTAAGT 57.779 40.909 19.93 0.00 0.00 2.24
3718 9229 5.565592 TTTCATACTGCAGGCACATTAAG 57.434 39.130 19.93 0.00 0.00 1.85
3719 9230 5.242615 TGTTTTCATACTGCAGGCACATTAA 59.757 36.000 19.93 1.05 0.00 1.40
3720 9231 4.764308 TGTTTTCATACTGCAGGCACATTA 59.236 37.500 19.93 0.00 0.00 1.90
3725 9236 4.870123 AATTGTTTTCATACTGCAGGCA 57.130 36.364 19.93 5.62 0.00 4.75
3726 9237 4.143052 GCAAATTGTTTTCATACTGCAGGC 60.143 41.667 19.93 1.47 32.07 4.85
3777 9289 3.536956 AACGTGAGACTGTTCTGGAAA 57.463 42.857 0.00 0.00 29.47 3.13
3820 9334 2.604046 AGACATGACTGCCGGATAAC 57.396 50.000 5.05 0.00 0.00 1.89
3823 9337 2.496899 AAAAGACATGACTGCCGGAT 57.503 45.000 5.05 0.00 0.00 4.18
3873 9417 6.575162 TCCTTCCTTAGCAAATTTGAGAAC 57.425 37.500 22.31 3.94 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.