Multiple sequence alignment - TraesCS7D01G505700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G505700 chr7D 100.000 3805 0 0 1 3805 611016105 611012301 0.000000e+00 7027.0
1 TraesCS7D01G505700 chr7D 89.435 1221 104 12 1703 2903 531052017 531050802 0.000000e+00 1517.0
2 TraesCS7D01G505700 chr7D 97.992 747 15 0 1 747 414295170 414294424 0.000000e+00 1297.0
3 TraesCS7D01G505700 chr7D 80.272 882 155 14 1113 1981 611074933 611074058 0.000000e+00 647.0
4 TraesCS7D01G505700 chr7D 88.642 405 34 5 3207 3603 530943794 530943394 2.060000e-132 483.0
5 TraesCS7D01G505700 chr7D 84.802 329 50 0 1113 1441 611082719 611082391 7.880000e-87 331.0
6 TraesCS7D01G505700 chr7D 92.222 180 12 1 3046 3225 453283663 453283486 1.750000e-63 254.0
7 TraesCS7D01G505700 chr7D 80.866 277 53 0 1481 1757 611082318 611082042 6.400000e-53 219.0
8 TraesCS7D01G505700 chr7D 84.568 162 15 3 3644 3805 530928489 530928338 6.580000e-33 152.0
9 TraesCS7D01G505700 chr7A 83.666 1702 227 29 1039 2723 700964610 700962943 0.000000e+00 1555.0
10 TraesCS7D01G505700 chr7A 81.150 1756 249 49 1039 2762 700981892 700980187 0.000000e+00 1334.0
11 TraesCS7D01G505700 chr7A 87.643 785 82 12 1948 2723 701005631 701004853 0.000000e+00 898.0
12 TraesCS7D01G505700 chr7A 88.483 712 73 5 1714 2419 611487871 611487163 0.000000e+00 852.0
13 TraesCS7D01G505700 chr7A 79.098 909 170 15 1113 2007 701032692 701031790 3.250000e-170 608.0
14 TraesCS7D01G505700 chr7A 84.570 512 60 13 1908 2405 700944680 700944174 1.230000e-134 490.0
15 TraesCS7D01G505700 chr7A 87.770 417 30 12 3202 3603 611471829 611471419 5.760000e-128 468.0
16 TraesCS7D01G505700 chr7A 78.889 630 112 12 1113 1725 701038088 701037463 1.270000e-109 407.0
17 TraesCS7D01G505700 chr7A 91.497 294 19 5 2614 2903 611472454 611472163 2.130000e-107 399.0
18 TraesCS7D01G505700 chr7A 86.294 197 17 6 3609 3805 700942685 700942499 4.980000e-49 206.0
19 TraesCS7D01G505700 chr7A 86.294 197 17 6 3609 3805 700979230 700979044 4.980000e-49 206.0
20 TraesCS7D01G505700 chr7A 84.577 201 20 4 3606 3805 611471321 611471131 5.020000e-44 189.0
21 TraesCS7D01G505700 chr7A 85.802 162 17 5 2909 3066 611472027 611471868 2.350000e-37 167.0
22 TraesCS7D01G505700 chr6D 98.394 747 12 0 1 747 383599659 383600405 0.000000e+00 1314.0
23 TraesCS7D01G505700 chr6D 95.783 166 6 1 3043 3207 433754366 433754531 2.250000e-67 267.0
24 TraesCS7D01G505700 chr5D 97.861 748 15 1 1 747 167754751 167755498 0.000000e+00 1291.0
25 TraesCS7D01G505700 chr5D 97.590 747 18 0 1 747 352236467 352237213 0.000000e+00 1280.0
26 TraesCS7D01G505700 chr5D 79.310 232 41 5 1118 1344 441125607 441125378 5.090000e-34 156.0
27 TraesCS7D01G505700 chr3D 97.858 747 14 2 1 747 94759862 94760606 0.000000e+00 1290.0
28 TraesCS7D01G505700 chr3D 94.706 170 9 0 3046 3215 238999414 238999583 8.100000e-67 265.0
29 TraesCS7D01G505700 chr4D 97.597 749 18 0 1 749 52452875 52452127 0.000000e+00 1284.0
30 TraesCS7D01G505700 chr4D 97.724 747 15 2 1 747 348412285 348413029 0.000000e+00 1284.0
31 TraesCS7D01G505700 chr4D 96.653 747 25 0 1 747 381423224 381422478 0.000000e+00 1242.0
32 TraesCS7D01G505700 chr1D 96.667 750 21 4 1 747 134441924 134441176 0.000000e+00 1243.0
33 TraesCS7D01G505700 chr1D 81.395 172 30 2 1836 2006 486333581 486333411 5.130000e-29 139.0
34 TraesCS7D01G505700 chrUn 81.932 880 112 28 1908 2762 83253544 83254401 0.000000e+00 701.0
35 TraesCS7D01G505700 chrUn 86.000 200 18 6 3606 3805 83255093 83255282 4.980000e-49 206.0
36 TraesCS7D01G505700 chrUn 86.000 200 18 6 3606 3805 406969078 406969267 4.980000e-49 206.0
37 TraesCS7D01G505700 chr1B 83.029 766 108 16 1043 1804 684045268 684044521 0.000000e+00 675.0
38 TraesCS7D01G505700 chr1B 80.440 864 134 20 1827 2661 684044471 684043614 8.970000e-176 627.0
39 TraesCS7D01G505700 chr1B 74.457 552 117 20 1687 2223 660524752 660525294 2.300000e-52 217.0
40 TraesCS7D01G505700 chr1B 72.176 478 114 17 1750 2218 677305674 677305207 1.110000e-25 128.0
41 TraesCS7D01G505700 chr1A 80.183 873 128 25 1827 2661 589871174 589872039 2.510000e-171 612.0
42 TraesCS7D01G505700 chr1A 80.336 417 63 12 2262 2661 589927318 589927732 7.990000e-77 298.0
43 TraesCS7D01G505700 chr7B 90.217 276 24 3 1706 1979 571492160 571491886 1.300000e-94 357.0
44 TraesCS7D01G505700 chr7B 90.598 117 11 0 1136 1252 607927813 607927929 5.090000e-34 156.0
45 TraesCS7D01G505700 chr2D 98.171 164 3 0 3046 3209 521564031 521564194 1.730000e-73 287.0
46 TraesCS7D01G505700 chr2D 96.933 163 5 0 3045 3207 305514868 305515030 1.350000e-69 274.0
47 TraesCS7D01G505700 chr2D 93.750 176 10 1 3042 3216 445733836 445733661 2.910000e-66 263.0
48 TraesCS7D01G505700 chr5B 96.319 163 6 0 3046 3208 539322883 539322721 6.270000e-68 268.0
49 TraesCS7D01G505700 chr5B 79.310 232 41 5 1118 1344 536800927 536800698 5.090000e-34 156.0
50 TraesCS7D01G505700 chr5B 88.889 54 6 0 2076 2129 688712162 688712215 2.450000e-07 67.6
51 TraesCS7D01G505700 chr4B 95.783 166 7 0 3042 3207 483266544 483266379 6.270000e-68 268.0
52 TraesCS7D01G505700 chr4B 95.706 163 7 0 3046 3208 63753841 63754003 2.910000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G505700 chr7D 611012301 611016105 3804 True 7027.00 7027 100.0000 1 3805 1 chr7D.!!$R6 3804
1 TraesCS7D01G505700 chr7D 531050802 531052017 1215 True 1517.00 1517 89.4350 1703 2903 1 chr7D.!!$R5 1200
2 TraesCS7D01G505700 chr7D 414294424 414295170 746 True 1297.00 1297 97.9920 1 747 1 chr7D.!!$R1 746
3 TraesCS7D01G505700 chr7D 611074058 611074933 875 True 647.00 647 80.2720 1113 1981 1 chr7D.!!$R7 868
4 TraesCS7D01G505700 chr7D 611082042 611082719 677 True 275.00 331 82.8340 1113 1757 2 chr7D.!!$R8 644
5 TraesCS7D01G505700 chr7A 700962943 700964610 1667 True 1555.00 1555 83.6660 1039 2723 1 chr7A.!!$R2 1684
6 TraesCS7D01G505700 chr7A 701004853 701005631 778 True 898.00 898 87.6430 1948 2723 1 chr7A.!!$R3 775
7 TraesCS7D01G505700 chr7A 611487163 611487871 708 True 852.00 852 88.4830 1714 2419 1 chr7A.!!$R1 705
8 TraesCS7D01G505700 chr7A 700979044 700981892 2848 True 770.00 1334 83.7220 1039 3805 2 chr7A.!!$R8 2766
9 TraesCS7D01G505700 chr7A 701031790 701032692 902 True 608.00 608 79.0980 1113 2007 1 chr7A.!!$R4 894
10 TraesCS7D01G505700 chr7A 701037463 701038088 625 True 407.00 407 78.8890 1113 1725 1 chr7A.!!$R5 612
11 TraesCS7D01G505700 chr7A 700942499 700944680 2181 True 348.00 490 85.4320 1908 3805 2 chr7A.!!$R7 1897
12 TraesCS7D01G505700 chr7A 611471131 611472454 1323 True 305.75 468 87.4115 2614 3805 4 chr7A.!!$R6 1191
13 TraesCS7D01G505700 chr6D 383599659 383600405 746 False 1314.00 1314 98.3940 1 747 1 chr6D.!!$F1 746
14 TraesCS7D01G505700 chr5D 167754751 167755498 747 False 1291.00 1291 97.8610 1 747 1 chr5D.!!$F1 746
15 TraesCS7D01G505700 chr5D 352236467 352237213 746 False 1280.00 1280 97.5900 1 747 1 chr5D.!!$F2 746
16 TraesCS7D01G505700 chr3D 94759862 94760606 744 False 1290.00 1290 97.8580 1 747 1 chr3D.!!$F1 746
17 TraesCS7D01G505700 chr4D 52452127 52452875 748 True 1284.00 1284 97.5970 1 749 1 chr4D.!!$R1 748
18 TraesCS7D01G505700 chr4D 348412285 348413029 744 False 1284.00 1284 97.7240 1 747 1 chr4D.!!$F1 746
19 TraesCS7D01G505700 chr4D 381422478 381423224 746 True 1242.00 1242 96.6530 1 747 1 chr4D.!!$R2 746
20 TraesCS7D01G505700 chr1D 134441176 134441924 748 True 1243.00 1243 96.6670 1 747 1 chr1D.!!$R1 746
21 TraesCS7D01G505700 chrUn 83253544 83255282 1738 False 453.50 701 83.9660 1908 3805 2 chrUn.!!$F2 1897
22 TraesCS7D01G505700 chr1B 684043614 684045268 1654 True 651.00 675 81.7345 1043 2661 2 chr1B.!!$R2 1618
23 TraesCS7D01G505700 chr1B 660524752 660525294 542 False 217.00 217 74.4570 1687 2223 1 chr1B.!!$F1 536
24 TraesCS7D01G505700 chr1A 589871174 589872039 865 False 612.00 612 80.1830 1827 2661 1 chr1A.!!$F1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 991 0.250467 CCGCCGAATCCCTCATCATT 60.250 55.0 0.0 0.0 0.0 2.57 F
1003 1011 0.032813 CCCCATTCTGCAATCCCACT 60.033 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 2863 0.326238 AGAATCAGAAGGGCGGGGTA 60.326 55.0 0.0 0.0 0.00 3.69 R
2830 2954 0.391927 TGACGGTGGATAAAAGCCCG 60.392 55.0 0.0 0.0 44.06 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
665 673 2.295349 ACAATCGACTTGTCCTACGTGT 59.705 45.455 0.00 0.00 44.99 4.49
749 757 1.375396 TGCGCGAGTTGGCTAATGT 60.375 52.632 12.10 0.00 0.00 2.71
750 758 0.953471 TGCGCGAGTTGGCTAATGTT 60.953 50.000 12.10 0.00 0.00 2.71
751 759 1.003851 GCGCGAGTTGGCTAATGTTA 58.996 50.000 12.10 0.00 0.00 2.41
752 760 1.004927 GCGCGAGTTGGCTAATGTTAG 60.005 52.381 12.10 0.00 0.00 2.34
753 761 2.536365 CGCGAGTTGGCTAATGTTAGA 58.464 47.619 0.00 0.00 32.47 2.10
754 762 2.281762 CGCGAGTTGGCTAATGTTAGAC 59.718 50.000 0.00 1.32 39.31 2.59
755 763 3.522553 GCGAGTTGGCTAATGTTAGACT 58.477 45.455 7.13 0.75 39.59 3.24
756 764 3.933332 GCGAGTTGGCTAATGTTAGACTT 59.067 43.478 7.13 0.00 39.59 3.01
757 765 4.392138 GCGAGTTGGCTAATGTTAGACTTT 59.608 41.667 7.13 0.00 39.59 2.66
758 766 5.106673 GCGAGTTGGCTAATGTTAGACTTTT 60.107 40.000 7.13 0.00 39.59 2.27
759 767 6.534934 CGAGTTGGCTAATGTTAGACTTTTC 58.465 40.000 7.13 1.89 39.59 2.29
760 768 6.481954 AGTTGGCTAATGTTAGACTTTTCG 57.518 37.500 7.13 0.00 39.59 3.46
761 769 5.995897 AGTTGGCTAATGTTAGACTTTTCGT 59.004 36.000 7.13 0.00 39.59 3.85
762 770 7.156673 AGTTGGCTAATGTTAGACTTTTCGTA 58.843 34.615 7.13 0.00 39.59 3.43
763 771 7.822822 AGTTGGCTAATGTTAGACTTTTCGTAT 59.177 33.333 7.13 0.00 39.59 3.06
764 772 8.448615 GTTGGCTAATGTTAGACTTTTCGTATT 58.551 33.333 7.13 0.00 39.59 1.89
765 773 8.556213 TGGCTAATGTTAGACTTTTCGTATTT 57.444 30.769 7.13 0.00 39.59 1.40
766 774 9.005777 TGGCTAATGTTAGACTTTTCGTATTTT 57.994 29.630 7.13 0.00 39.59 1.82
767 775 9.836076 GGCTAATGTTAGACTTTTCGTATTTTT 57.164 29.630 4.03 0.00 35.85 1.94
795 803 9.787435 AGATAAAATTGTCTTAACCACTGTACA 57.213 29.630 0.00 0.00 0.00 2.90
798 806 5.880054 ATTGTCTTAACCACTGTACATGC 57.120 39.130 0.00 0.00 0.00 4.06
799 807 3.670625 TGTCTTAACCACTGTACATGCC 58.329 45.455 0.00 0.00 0.00 4.40
800 808 3.071747 TGTCTTAACCACTGTACATGCCA 59.928 43.478 0.00 0.00 0.00 4.92
801 809 3.684788 GTCTTAACCACTGTACATGCCAG 59.315 47.826 10.57 10.57 36.01 4.85
802 810 2.779755 TAACCACTGTACATGCCAGG 57.220 50.000 15.23 4.42 34.16 4.45
803 811 0.609131 AACCACTGTACATGCCAGGC 60.609 55.000 3.66 3.66 34.16 4.85
804 812 1.750399 CCACTGTACATGCCAGGCC 60.750 63.158 9.64 0.00 34.16 5.19
805 813 2.108514 CACTGTACATGCCAGGCCG 61.109 63.158 9.64 2.13 34.16 6.13
806 814 2.268920 CTGTACATGCCAGGCCGT 59.731 61.111 9.64 9.02 0.00 5.68
807 815 2.046411 TGTACATGCCAGGCCGTG 60.046 61.111 9.64 10.73 0.00 4.94
808 816 2.046314 GTACATGCCAGGCCGTGT 60.046 61.111 20.03 20.03 32.74 4.49
809 817 2.046411 TACATGCCAGGCCGTGTG 60.046 61.111 23.36 13.59 31.11 3.82
810 818 3.620419 TACATGCCAGGCCGTGTGG 62.620 63.158 23.36 5.12 38.21 4.17
820 828 4.673298 CCGTGTGGTGCGGTGCTA 62.673 66.667 0.00 0.00 43.84 3.49
821 829 3.112075 CGTGTGGTGCGGTGCTAG 61.112 66.667 0.00 0.00 0.00 3.42
822 830 3.423154 GTGTGGTGCGGTGCTAGC 61.423 66.667 8.10 8.10 0.00 3.42
830 838 4.778415 CGGTGCTAGCGTGCTCGT 62.778 66.667 10.77 0.00 39.49 4.18
831 839 3.181967 GGTGCTAGCGTGCTCGTG 61.182 66.667 10.77 2.27 39.49 4.35
832 840 3.181967 GTGCTAGCGTGCTCGTGG 61.182 66.667 10.77 1.95 39.49 4.94
833 841 4.435436 TGCTAGCGTGCTCGTGGG 62.435 66.667 10.77 1.61 39.49 4.61
835 843 4.135153 CTAGCGTGCTCGTGGGCT 62.135 66.667 10.18 0.74 39.49 5.19
836 844 4.435436 TAGCGTGCTCGTGGGCTG 62.435 66.667 10.18 0.00 39.49 4.85
850 858 3.379445 GCTGGCATGCCAAGCACT 61.379 61.111 35.93 0.00 46.63 4.40
851 859 2.571757 CTGGCATGCCAAGCACTG 59.428 61.111 37.47 22.35 46.63 3.66
852 860 3.642778 CTGGCATGCCAAGCACTGC 62.643 63.158 37.47 9.33 46.63 4.40
853 861 4.789075 GGCATGCCAAGCACTGCG 62.789 66.667 32.08 0.00 43.04 5.18
863 871 2.892425 GCACTGCGCGATTAGGCT 60.892 61.111 12.10 0.00 0.00 4.58
864 872 3.009140 CACTGCGCGATTAGGCTG 58.991 61.111 12.10 0.00 0.00 4.85
865 873 1.811266 CACTGCGCGATTAGGCTGT 60.811 57.895 12.10 0.00 41.20 4.40
866 874 1.811266 ACTGCGCGATTAGGCTGTG 60.811 57.895 12.10 0.00 39.42 3.66
867 875 1.811266 CTGCGCGATTAGGCTGTGT 60.811 57.895 12.10 0.00 0.00 3.72
868 876 2.028766 CTGCGCGATTAGGCTGTGTG 62.029 60.000 12.10 0.00 0.00 3.82
869 877 2.813179 GCGCGATTAGGCTGTGTGG 61.813 63.158 12.10 0.00 0.00 4.17
870 878 1.447838 CGCGATTAGGCTGTGTGGT 60.448 57.895 0.00 0.00 0.00 4.16
871 879 1.695893 CGCGATTAGGCTGTGTGGTG 61.696 60.000 0.00 0.00 0.00 4.17
872 880 1.982073 GCGATTAGGCTGTGTGGTGC 61.982 60.000 0.00 0.00 0.00 5.01
879 887 3.349006 CTGTGTGGTGCCGTGCTC 61.349 66.667 0.00 0.00 0.00 4.26
880 888 4.168291 TGTGTGGTGCCGTGCTCA 62.168 61.111 0.00 0.00 0.00 4.26
881 889 3.649986 GTGTGGTGCCGTGCTCAC 61.650 66.667 12.19 12.19 35.41 3.51
894 902 3.200593 CTCACGAGCTGGCATGCC 61.201 66.667 30.54 30.54 0.00 4.40
895 903 3.963687 CTCACGAGCTGGCATGCCA 62.964 63.158 36.26 36.26 45.02 4.92
896 904 3.057548 CACGAGCTGGCATGCCAA 61.058 61.111 37.47 22.27 46.63 4.52
897 905 2.749044 ACGAGCTGGCATGCCAAG 60.749 61.111 37.47 29.74 46.63 3.61
898 906 4.189188 CGAGCTGGCATGCCAAGC 62.189 66.667 37.47 35.97 46.63 4.01
899 907 3.066190 GAGCTGGCATGCCAAGCA 61.066 61.111 38.83 23.18 46.63 3.91
900 908 3.352338 GAGCTGGCATGCCAAGCAC 62.352 63.158 38.83 33.67 46.63 4.40
901 909 4.789075 GCTGGCATGCCAAGCACG 62.789 66.667 35.93 27.86 46.63 5.34
902 910 4.124351 CTGGCATGCCAAGCACGG 62.124 66.667 37.47 22.35 46.63 4.94
921 929 3.061848 CCGCGGATGCCCAACTTT 61.062 61.111 24.07 0.00 38.08 2.66
922 930 2.179018 CGCGGATGCCCAACTTTG 59.821 61.111 0.00 0.00 38.08 2.77
923 931 2.125952 GCGGATGCCCAACTTTGC 60.126 61.111 0.00 0.00 33.98 3.68
924 932 2.639327 GCGGATGCCCAACTTTGCT 61.639 57.895 0.00 0.00 33.98 3.91
925 933 1.508088 CGGATGCCCAACTTTGCTC 59.492 57.895 0.00 0.00 0.00 4.26
926 934 0.962356 CGGATGCCCAACTTTGCTCT 60.962 55.000 0.00 0.00 0.00 4.09
927 935 1.678728 CGGATGCCCAACTTTGCTCTA 60.679 52.381 0.00 0.00 0.00 2.43
928 936 2.446435 GGATGCCCAACTTTGCTCTAA 58.554 47.619 0.00 0.00 0.00 2.10
929 937 3.026694 GGATGCCCAACTTTGCTCTAAT 58.973 45.455 0.00 0.00 0.00 1.73
930 938 3.448660 GGATGCCCAACTTTGCTCTAATT 59.551 43.478 0.00 0.00 0.00 1.40
931 939 4.644685 GGATGCCCAACTTTGCTCTAATTA 59.355 41.667 0.00 0.00 0.00 1.40
932 940 5.127031 GGATGCCCAACTTTGCTCTAATTAA 59.873 40.000 0.00 0.00 0.00 1.40
933 941 6.350949 GGATGCCCAACTTTGCTCTAATTAAA 60.351 38.462 0.00 0.00 0.00 1.52
934 942 6.412362 TGCCCAACTTTGCTCTAATTAAAA 57.588 33.333 0.00 0.00 0.00 1.52
935 943 6.821388 TGCCCAACTTTGCTCTAATTAAAAA 58.179 32.000 0.00 0.00 0.00 1.94
957 965 8.487313 AAAAACAAAGGAAATTTCACTACCAC 57.513 30.769 19.49 0.73 0.00 4.16
958 966 7.418337 AAACAAAGGAAATTTCACTACCACT 57.582 32.000 19.49 3.07 0.00 4.00
959 967 6.635030 ACAAAGGAAATTTCACTACCACTC 57.365 37.500 19.49 0.00 0.00 3.51
960 968 5.535030 ACAAAGGAAATTTCACTACCACTCC 59.465 40.000 19.49 0.00 0.00 3.85
961 969 4.993705 AGGAAATTTCACTACCACTCCA 57.006 40.909 19.49 0.00 0.00 3.86
962 970 4.652822 AGGAAATTTCACTACCACTCCAC 58.347 43.478 19.49 0.00 0.00 4.02
963 971 4.351111 AGGAAATTTCACTACCACTCCACT 59.649 41.667 19.49 0.30 0.00 4.00
964 972 4.695928 GGAAATTTCACTACCACTCCACTC 59.304 45.833 19.49 0.00 0.00 3.51
965 973 3.983044 ATTTCACTACCACTCCACTCC 57.017 47.619 0.00 0.00 0.00 3.85
966 974 1.254026 TTCACTACCACTCCACTCCG 58.746 55.000 0.00 0.00 0.00 4.63
967 975 1.215647 CACTACCACTCCACTCCGC 59.784 63.158 0.00 0.00 0.00 5.54
968 976 1.982938 ACTACCACTCCACTCCGCC 60.983 63.158 0.00 0.00 0.00 6.13
969 977 3.064987 CTACCACTCCACTCCGCCG 62.065 68.421 0.00 0.00 0.00 6.46
970 978 3.572447 TACCACTCCACTCCGCCGA 62.572 63.158 0.00 0.00 0.00 5.54
971 979 3.691342 CCACTCCACTCCGCCGAA 61.691 66.667 0.00 0.00 0.00 4.30
972 980 2.579201 CACTCCACTCCGCCGAAT 59.421 61.111 0.00 0.00 0.00 3.34
973 981 1.519455 CACTCCACTCCGCCGAATC 60.519 63.158 0.00 0.00 0.00 2.52
974 982 2.107141 CTCCACTCCGCCGAATCC 59.893 66.667 0.00 0.00 0.00 3.01
975 983 3.447025 CTCCACTCCGCCGAATCCC 62.447 68.421 0.00 0.00 0.00 3.85
976 984 3.470888 CCACTCCGCCGAATCCCT 61.471 66.667 0.00 0.00 0.00 4.20
977 985 2.107141 CACTCCGCCGAATCCCTC 59.893 66.667 0.00 0.00 0.00 4.30
978 986 2.363795 ACTCCGCCGAATCCCTCA 60.364 61.111 0.00 0.00 0.00 3.86
979 987 1.762460 ACTCCGCCGAATCCCTCAT 60.762 57.895 0.00 0.00 0.00 2.90
980 988 1.005630 CTCCGCCGAATCCCTCATC 60.006 63.158 0.00 0.00 0.00 2.92
981 989 1.748329 CTCCGCCGAATCCCTCATCA 61.748 60.000 0.00 0.00 0.00 3.07
982 990 1.121407 TCCGCCGAATCCCTCATCAT 61.121 55.000 0.00 0.00 0.00 2.45
983 991 0.250467 CCGCCGAATCCCTCATCATT 60.250 55.000 0.00 0.00 0.00 2.57
984 992 1.151668 CGCCGAATCCCTCATCATTC 58.848 55.000 0.00 0.00 0.00 2.67
985 993 1.528129 GCCGAATCCCTCATCATTCC 58.472 55.000 0.00 0.00 0.00 3.01
986 994 1.884067 GCCGAATCCCTCATCATTCCC 60.884 57.143 0.00 0.00 0.00 3.97
987 995 1.271597 CCGAATCCCTCATCATTCCCC 60.272 57.143 0.00 0.00 0.00 4.81
988 996 1.421268 CGAATCCCTCATCATTCCCCA 59.579 52.381 0.00 0.00 0.00 4.96
989 997 2.040813 CGAATCCCTCATCATTCCCCAT 59.959 50.000 0.00 0.00 0.00 4.00
990 998 3.499202 CGAATCCCTCATCATTCCCCATT 60.499 47.826 0.00 0.00 0.00 3.16
991 999 3.822097 ATCCCTCATCATTCCCCATTC 57.178 47.619 0.00 0.00 0.00 2.67
992 1000 2.793017 TCCCTCATCATTCCCCATTCT 58.207 47.619 0.00 0.00 0.00 2.40
993 1001 2.444388 TCCCTCATCATTCCCCATTCTG 59.556 50.000 0.00 0.00 0.00 3.02
994 1002 2.236766 CCTCATCATTCCCCATTCTGC 58.763 52.381 0.00 0.00 0.00 4.26
995 1003 2.423803 CCTCATCATTCCCCATTCTGCA 60.424 50.000 0.00 0.00 0.00 4.41
996 1004 3.293337 CTCATCATTCCCCATTCTGCAA 58.707 45.455 0.00 0.00 0.00 4.08
997 1005 3.895656 CTCATCATTCCCCATTCTGCAAT 59.104 43.478 0.00 0.00 0.00 3.56
998 1006 3.893200 TCATCATTCCCCATTCTGCAATC 59.107 43.478 0.00 0.00 0.00 2.67
999 1007 2.669781 TCATTCCCCATTCTGCAATCC 58.330 47.619 0.00 0.00 0.00 3.01
1000 1008 1.690352 CATTCCCCATTCTGCAATCCC 59.310 52.381 0.00 0.00 0.00 3.85
1001 1009 0.709397 TTCCCCATTCTGCAATCCCA 59.291 50.000 0.00 0.00 0.00 4.37
1002 1010 0.033208 TCCCCATTCTGCAATCCCAC 60.033 55.000 0.00 0.00 0.00 4.61
1003 1011 0.032813 CCCCATTCTGCAATCCCACT 60.033 55.000 0.00 0.00 0.00 4.00
1004 1012 1.396653 CCCATTCTGCAATCCCACTC 58.603 55.000 0.00 0.00 0.00 3.51
1005 1013 1.396653 CCATTCTGCAATCCCACTCC 58.603 55.000 0.00 0.00 0.00 3.85
1006 1014 1.064166 CCATTCTGCAATCCCACTCCT 60.064 52.381 0.00 0.00 0.00 3.69
1007 1015 2.295885 CATTCTGCAATCCCACTCCTC 58.704 52.381 0.00 0.00 0.00 3.71
1008 1016 0.620556 TTCTGCAATCCCACTCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
1009 1017 1.153289 CTGCAATCCCACTCCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
1010 1018 2.514824 GCAATCCCACTCCTCCGC 60.515 66.667 0.00 0.00 0.00 5.54
1011 1019 2.190578 CAATCCCACTCCTCCGCC 59.809 66.667 0.00 0.00 0.00 6.13
1012 1020 2.285368 AATCCCACTCCTCCGCCA 60.285 61.111 0.00 0.00 0.00 5.69
1013 1021 2.670148 AATCCCACTCCTCCGCCAC 61.670 63.158 0.00 0.00 0.00 5.01
1016 1024 4.394712 CCACTCCTCCGCCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
1017 1025 4.394712 CACTCCTCCGCCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
1018 1026 4.954118 ACTCCTCCGCCACCACCA 62.954 66.667 0.00 0.00 0.00 4.17
1019 1027 4.394712 CTCCTCCGCCACCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
1025 1033 4.885270 CGCCACCACCACCACCAA 62.885 66.667 0.00 0.00 0.00 3.67
1026 1034 2.912025 GCCACCACCACCACCAAG 60.912 66.667 0.00 0.00 0.00 3.61
1027 1035 2.912025 CCACCACCACCACCAAGC 60.912 66.667 0.00 0.00 0.00 4.01
1028 1036 2.912025 CACCACCACCACCAAGCC 60.912 66.667 0.00 0.00 0.00 4.35
1029 1037 3.425014 ACCACCACCACCAAGCCA 61.425 61.111 0.00 0.00 0.00 4.75
1030 1038 2.118076 CCACCACCACCAAGCCAT 59.882 61.111 0.00 0.00 0.00 4.40
1031 1039 2.277591 CCACCACCACCAAGCCATG 61.278 63.158 0.00 0.00 0.00 3.66
1040 1048 4.260355 CAAGCCATGGATGCGCGG 62.260 66.667 18.40 0.00 0.00 6.46
1078 1086 1.782181 GCAAGTTCGAGCGAGTTCC 59.218 57.895 0.00 0.00 0.00 3.62
1079 1087 1.945776 GCAAGTTCGAGCGAGTTCCG 61.946 60.000 0.00 0.00 42.21 4.30
1088 1096 1.218316 GCGAGTTCCGGACCAAGAT 59.782 57.895 1.83 0.00 39.04 2.40
1261 1269 2.504244 CAACCTCGTCGCCGACTC 60.504 66.667 16.07 0.00 38.40 3.36
1268 1276 2.432628 GTCGCCGACTCCACCTTG 60.433 66.667 10.56 0.00 0.00 3.61
1278 1286 2.743928 CCACCTTGTCTCGCCAGC 60.744 66.667 0.00 0.00 0.00 4.85
1363 1371 4.301027 GCTCCCCTACATCCGCCG 62.301 72.222 0.00 0.00 0.00 6.46
1367 1375 3.524606 CCCTACATCCGCCGACGT 61.525 66.667 0.00 0.00 37.70 4.34
1387 1395 1.201098 GACTACGGCAAGATCGACGC 61.201 60.000 0.00 0.00 42.81 5.19
1418 1426 2.503061 CAGGCCCTCACCGATCTG 59.497 66.667 0.00 0.00 33.69 2.90
1453 1475 3.037485 GCTACGACAGCCAAGACTC 57.963 57.895 0.00 0.00 45.23 3.36
1457 1479 2.671682 GACAGCCAAGACTCCCCC 59.328 66.667 0.00 0.00 0.00 5.40
1558 1605 3.112709 GACTTGTCCGCGCAGTCC 61.113 66.667 8.75 0.00 0.00 3.85
1568 1615 0.240945 CGCGCAGTCCCTGAATTTTT 59.759 50.000 8.75 0.00 32.44 1.94
1577 1624 5.012893 AGTCCCTGAATTTTTCACATCTCC 58.987 41.667 0.00 0.00 35.46 3.71
1595 1642 1.434622 CCAGCAGCTCGGCTTGTATG 61.435 60.000 0.00 0.00 42.71 2.39
1596 1643 1.153289 AGCAGCTCGGCTTGTATGG 60.153 57.895 0.00 0.00 42.71 2.74
1603 1650 0.907704 TCGGCTTGTATGGGGTCACT 60.908 55.000 0.00 0.00 0.00 3.41
1604 1651 0.035439 CGGCTTGTATGGGGTCACTT 60.035 55.000 0.00 0.00 0.00 3.16
1641 1688 2.223112 CGCATTCTCTGAATTTCCCACG 60.223 50.000 0.00 0.00 0.00 4.94
1661 1708 0.035725 CCTCAAGCAGCTCACCATGA 60.036 55.000 0.00 0.00 0.00 3.07
1677 1724 0.615331 ATGAGCGTGGTCACCATCTT 59.385 50.000 0.00 0.00 35.28 2.40
1680 1727 1.003839 GCGTGGTCACCATCTTGGA 60.004 57.895 0.00 0.00 40.96 3.53
1771 1818 4.521062 GCTCGCCTCCGCATCAGT 62.521 66.667 0.00 0.00 34.03 3.41
1776 1823 2.989639 CCTCCGCATCAGTTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
1795 1842 2.028130 CAGACTCTTAGGAGCATCGGT 58.972 52.381 0.98 0.00 42.98 4.69
1825 1899 0.693049 CTTACACACAGGGGCCTTCT 59.307 55.000 0.84 0.00 0.00 2.85
1905 1985 1.319541 CCAGACTATGGTCCGACGAT 58.680 55.000 5.47 1.40 44.91 3.73
1981 2061 3.068590 GCATATCCAAACTCCACATTGGG 59.931 47.826 4.83 0.00 44.99 4.12
2016 2099 1.160137 GTAACAGCAGCCTCCAACAG 58.840 55.000 0.00 0.00 0.00 3.16
2021 2104 1.228245 GCAGCCTCCAACAGTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
2038 2121 6.072286 ACAGTCCAACAATCAGAATTCACATC 60.072 38.462 8.44 0.00 0.00 3.06
2057 2154 9.513906 TTCACATCAGTATTTGTCCTTATTTCA 57.486 29.630 0.00 0.00 0.00 2.69
2236 2338 4.819630 TGAGTACTCACAATTGTTTGTCCC 59.180 41.667 21.74 5.51 44.24 4.46
2271 2376 2.289945 GGCATGACTGACTTGTCCTCTT 60.290 50.000 0.00 0.00 36.21 2.85
2273 2378 4.563580 GGCATGACTGACTTGTCCTCTTAA 60.564 45.833 0.00 0.00 36.21 1.85
2276 2381 3.323979 TGACTGACTTGTCCTCTTAACCC 59.676 47.826 0.00 0.00 36.21 4.11
2277 2382 3.314693 ACTGACTTGTCCTCTTAACCCA 58.685 45.455 0.00 0.00 0.00 4.51
2279 2384 4.351111 ACTGACTTGTCCTCTTAACCCATT 59.649 41.667 0.00 0.00 0.00 3.16
2282 2389 6.235664 TGACTTGTCCTCTTAACCCATTAAC 58.764 40.000 0.00 0.00 0.00 2.01
2326 2439 1.145598 CATCTCCAGTCGCAGCCAT 59.854 57.895 0.00 0.00 0.00 4.40
2419 2532 3.305720 AGAGTGGTGTGGAAGAACTACA 58.694 45.455 0.00 0.00 37.64 2.74
2432 2545 2.578021 AGAACTACATTGGGGACATGCT 59.422 45.455 0.00 0.00 42.32 3.79
2518 2634 1.666872 AGTAACAGTTGCGACCGCC 60.667 57.895 12.08 0.00 41.09 6.13
2527 2643 4.179579 GCGACCGCCAATGGAAGC 62.180 66.667 2.05 0.00 34.56 3.86
2544 2660 3.428045 GGAAGCCTAATCAACACATGTGC 60.428 47.826 25.68 8.31 0.00 4.57
2592 2708 4.334759 CCTGATGCTCGACTTGAATTCATT 59.665 41.667 9.40 0.00 0.00 2.57
2596 2712 6.595326 TGATGCTCGACTTGAATTCATTAGTT 59.405 34.615 9.40 0.00 0.00 2.24
2599 2715 6.871492 TGCTCGACTTGAATTCATTAGTTGTA 59.129 34.615 20.01 10.81 0.00 2.41
2600 2716 7.549134 TGCTCGACTTGAATTCATTAGTTGTAT 59.451 33.333 20.01 0.00 0.00 2.29
2606 2725 9.466497 ACTTGAATTCATTAGTTGTATGGATGT 57.534 29.630 9.40 0.00 0.00 3.06
2712 2835 0.183971 TTCGGCCCCTTTCAGAACAA 59.816 50.000 0.00 0.00 0.00 2.83
2748 2871 2.079158 GTAGTTGAAAGTTACCCCGCC 58.921 52.381 0.00 0.00 0.00 6.13
2810 2933 3.220999 GAAGGTTTTGTGGCCCGCC 62.221 63.158 0.00 0.00 0.00 6.13
2811 2934 3.749284 AAGGTTTTGTGGCCCGCCT 62.749 57.895 7.35 0.00 36.94 5.52
2845 2969 2.405143 GCTCGGGCTTTTATCCACC 58.595 57.895 0.00 0.00 35.22 4.61
2886 3012 5.129320 GCAAGATGATATTGAAAGGGGGTTT 59.871 40.000 3.66 0.00 0.00 3.27
2887 3013 6.683861 GCAAGATGATATTGAAAGGGGGTTTC 60.684 42.308 3.66 0.00 44.41 2.78
2888 3014 5.133221 AGATGATATTGAAAGGGGGTTTCG 58.867 41.667 0.00 0.00 46.76 3.46
2903 3031 4.482386 GGGTTTCGGAAGTTTATTTCTGC 58.518 43.478 0.00 0.00 34.20 4.26
2905 3033 5.413523 GGGTTTCGGAAGTTTATTTCTGCTA 59.586 40.000 0.00 0.00 34.20 3.49
2918 3176 2.019948 TCTGCTATGCTGTGCTTGAG 57.980 50.000 0.00 0.00 0.00 3.02
2931 3189 6.368791 TGCTGTGCTTGAGTGTTAACTATTAG 59.631 38.462 7.22 0.00 36.52 1.73
2952 3213 4.065789 AGCTTTTCTGTGTAGGTTGTAGC 58.934 43.478 0.00 0.00 0.00 3.58
2984 3245 6.775088 TCTTTTCTGTTTGATGTCATATCGC 58.225 36.000 0.00 0.00 0.00 4.58
2989 3250 5.463392 TCTGTTTGATGTCATATCGCTAAGC 59.537 40.000 0.00 0.00 0.00 3.09
3001 3262 1.067846 TCGCTAAGCTGTGTACACCAG 60.068 52.381 22.91 19.14 0.00 4.00
3002 3263 1.079503 GCTAAGCTGTGTACACCAGC 58.920 55.000 28.29 28.29 41.85 4.85
3003 3264 1.608025 GCTAAGCTGTGTACACCAGCA 60.608 52.381 32.69 21.28 43.78 4.41
3004 3265 2.341257 CTAAGCTGTGTACACCAGCAG 58.659 52.381 32.69 24.41 43.78 4.24
3018 3279 3.651803 CCAGCAGTAGCAGGTACTATC 57.348 52.381 12.01 7.40 40.27 2.08
3019 3280 2.297597 CCAGCAGTAGCAGGTACTATCC 59.702 54.545 12.01 4.43 40.27 2.59
3043 3304 4.878971 TGCTGTTTCTGTTTACACTAGCAA 59.121 37.500 0.00 0.00 0.00 3.91
3059 3320 1.209747 AGCAATTACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
3060 3321 1.209747 GCAATTACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
3066 3327 7.450903 CAATTACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
3067 3328 8.591072 CAATTACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
3068 3329 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3072 3333 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3074 3335 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3075 3336 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3076 3337 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3077 3338 8.712285 TCCGTTCCTAAATATAAGTCTTTGTG 57.288 34.615 0.00 0.00 0.00 3.33
3078 3339 7.767198 TCCGTTCCTAAATATAAGTCTTTGTGG 59.233 37.037 0.00 0.00 0.00 4.17
3079 3340 7.767198 CCGTTCCTAAATATAAGTCTTTGTGGA 59.233 37.037 0.00 0.00 0.00 4.02
3081 3342 9.886132 GTTCCTAAATATAAGTCTTTGTGGAGA 57.114 33.333 0.00 0.00 0.00 3.71
3088 3349 9.965902 AATATAAGTCTTTGTGGAGATTTCACT 57.034 29.630 0.00 0.00 36.21 3.41
3093 3354 6.013379 AGTCTTTGTGGAGATTTCACTATGGA 60.013 38.462 0.00 0.00 36.21 3.41
3094 3355 6.092807 GTCTTTGTGGAGATTTCACTATGGAC 59.907 42.308 0.00 0.00 36.21 4.02
3095 3356 4.487714 TGTGGAGATTTCACTATGGACC 57.512 45.455 0.00 0.00 36.21 4.46
3097 3358 4.192317 GTGGAGATTTCACTATGGACCAC 58.808 47.826 0.00 0.00 38.40 4.16
3098 3359 3.843619 TGGAGATTTCACTATGGACCACA 59.156 43.478 0.00 0.00 0.00 4.17
3101 3362 5.992217 GGAGATTTCACTATGGACCACATAC 59.008 44.000 0.00 0.00 41.03 2.39
3102 3363 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
3103 3364 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
3104 3365 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
3105 3366 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
3106 3367 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
3108 3369 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
3109 3370 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
3124 3385 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
3125 3386 6.650807 ACGGATGTATGTAGATGCATTTTAGG 59.349 38.462 0.00 0.00 35.26 2.69
3126 3387 6.092670 CGGATGTATGTAGATGCATTTTAGGG 59.907 42.308 0.00 0.00 35.26 3.53
3127 3388 6.942576 GGATGTATGTAGATGCATTTTAGGGT 59.057 38.462 0.00 0.00 35.26 4.34
3128 3389 7.094634 GGATGTATGTAGATGCATTTTAGGGTG 60.095 40.741 0.00 0.00 35.26 4.61
3129 3390 6.658849 TGTATGTAGATGCATTTTAGGGTGT 58.341 36.000 0.00 0.00 0.00 4.16
3130 3391 7.797062 TGTATGTAGATGCATTTTAGGGTGTA 58.203 34.615 0.00 0.00 0.00 2.90
3131 3392 7.931407 TGTATGTAGATGCATTTTAGGGTGTAG 59.069 37.037 0.00 0.00 0.00 2.74
3132 3393 6.553953 TGTAGATGCATTTTAGGGTGTAGA 57.446 37.500 0.00 0.00 0.00 2.59
3133 3394 7.136822 TGTAGATGCATTTTAGGGTGTAGAT 57.863 36.000 0.00 0.00 0.00 1.98
3134 3395 7.573710 TGTAGATGCATTTTAGGGTGTAGATT 58.426 34.615 0.00 0.00 0.00 2.40
3135 3396 7.715249 TGTAGATGCATTTTAGGGTGTAGATTC 59.285 37.037 0.00 0.00 0.00 2.52
3136 3397 6.662755 AGATGCATTTTAGGGTGTAGATTCA 58.337 36.000 0.00 0.00 0.00 2.57
3137 3398 6.543831 AGATGCATTTTAGGGTGTAGATTCAC 59.456 38.462 0.00 0.00 37.57 3.18
3138 3399 5.815581 TGCATTTTAGGGTGTAGATTCACT 58.184 37.500 0.00 0.00 38.28 3.41
3139 3400 6.245408 TGCATTTTAGGGTGTAGATTCACTT 58.755 36.000 0.00 0.00 38.28 3.16
3140 3401 7.398829 TGCATTTTAGGGTGTAGATTCACTTA 58.601 34.615 0.00 0.00 38.28 2.24
3141 3402 8.052748 TGCATTTTAGGGTGTAGATTCACTTAT 58.947 33.333 0.00 0.00 38.28 1.73
3142 3403 8.903820 GCATTTTAGGGTGTAGATTCACTTATT 58.096 33.333 0.00 0.00 38.28 1.40
3146 3407 6.759497 AGGGTGTAGATTCACTTATTTTGC 57.241 37.500 0.00 0.00 38.28 3.68
3147 3408 6.485171 AGGGTGTAGATTCACTTATTTTGCT 58.515 36.000 0.00 0.00 38.28 3.91
3148 3409 6.599638 AGGGTGTAGATTCACTTATTTTGCTC 59.400 38.462 0.00 0.00 38.28 4.26
3149 3410 6.183360 GGGTGTAGATTCACTTATTTTGCTCC 60.183 42.308 0.00 0.00 38.28 4.70
3150 3411 6.456988 GGTGTAGATTCACTTATTTTGCTCCG 60.457 42.308 0.00 0.00 38.28 4.63
3151 3412 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
3152 3413 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
3153 3414 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
3154 3415 7.251704 AGATTCACTTATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
3155 3416 6.823689 AGATTCACTTATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
3156 3417 7.985184 AGATTCACTTATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
3157 3418 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
3158 3419 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
3159 3420 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
3160 3421 6.018994 CACTTATTTTGCTCCGTATGTAGTCC 60.019 42.308 0.00 0.00 0.00 3.85
3161 3422 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3162 3423 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3163 3424 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3164 3425 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
3165 3426 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
3166 3427 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
3167 3428 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
3168 3429 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
3180 3441 5.677319 TCCATAGTGGAACCTCTACAAAG 57.323 43.478 5.02 0.00 45.00 2.77
3181 3442 5.338632 TCCATAGTGGAACCTCTACAAAGA 58.661 41.667 5.02 0.00 45.00 2.52
3182 3443 5.187186 TCCATAGTGGAACCTCTACAAAGAC 59.813 44.000 5.02 0.00 45.00 3.01
3183 3444 5.187967 CCATAGTGGAACCTCTACAAAGACT 59.812 44.000 5.02 0.00 40.96 3.24
3184 3445 6.295916 CCATAGTGGAACCTCTACAAAGACTT 60.296 42.308 5.02 0.00 40.96 3.01
3185 3446 7.093465 CCATAGTGGAACCTCTACAAAGACTTA 60.093 40.741 5.02 0.00 40.96 2.24
3186 3447 6.936968 AGTGGAACCTCTACAAAGACTTAT 57.063 37.500 0.00 0.00 37.80 1.73
3187 3448 9.710818 ATAGTGGAACCTCTACAAAGACTTATA 57.289 33.333 5.02 0.00 37.80 0.98
3188 3449 8.611051 AGTGGAACCTCTACAAAGACTTATAT 57.389 34.615 0.00 0.00 37.80 0.86
3189 3450 9.047947 AGTGGAACCTCTACAAAGACTTATATT 57.952 33.333 0.00 0.00 37.80 1.28
3190 3451 9.668497 GTGGAACCTCTACAAAGACTTATATTT 57.332 33.333 0.00 0.00 0.00 1.40
3229 3490 8.432805 AGTACTTGGTATCAGCTATTATGCTTT 58.567 33.333 0.00 0.00 41.98 3.51
3297 3569 9.579768 TTCGATTTTGAAATATACAATGGTTGG 57.420 29.630 0.00 0.00 34.12 3.77
3298 3570 7.704472 TCGATTTTGAAATATACAATGGTTGGC 59.296 33.333 0.00 0.00 34.12 4.52
3299 3571 7.490725 CGATTTTGAAATATACAATGGTTGGCA 59.509 33.333 0.00 0.00 34.12 4.92
3302 3574 7.897575 TTGAAATATACAATGGTTGGCAAAC 57.102 32.000 8.70 8.70 35.40 2.93
3320 3595 2.581354 CGGCAACCCCTCTCTCTG 59.419 66.667 0.00 0.00 0.00 3.35
3341 3616 7.012989 TCTCTGATGATTTTCATGTATGGCTTG 59.987 37.037 0.00 0.00 37.20 4.01
3412 3693 0.259938 AGGGTTCATGGAGATTGGGC 59.740 55.000 0.00 0.00 0.00 5.36
3422 3703 0.107654 GAGATTGGGCGGTAGCTGTT 60.108 55.000 0.00 0.00 44.37 3.16
3451 3732 2.564947 ACTCAATGGAGCGAGTTCTTCT 59.435 45.455 0.00 0.00 45.42 2.85
3469 3758 4.922026 GTGGTGGTTCGGCGGTGT 62.922 66.667 7.21 0.00 0.00 4.16
3470 3759 4.920112 TGGTGGTTCGGCGGTGTG 62.920 66.667 7.21 0.00 0.00 3.82
3558 3847 2.500910 CTGAGGAAAGCAGAGGAGACAT 59.499 50.000 0.00 0.00 35.39 3.06
3580 3869 8.831715 ACATAAGTGGTTCCAATTTTTCATTC 57.168 30.769 9.72 0.00 0.00 2.67
3603 3892 7.038154 TCCCAACAAACTGACAATCTTTTAG 57.962 36.000 0.00 0.00 0.00 1.85
3604 3893 5.691754 CCCAACAAACTGACAATCTTTTAGC 59.308 40.000 0.00 0.00 0.00 3.09
3621 4267 0.665835 AGCGCGGACAAAATTCACAA 59.334 45.000 8.83 0.00 0.00 3.33
3624 4270 1.595976 CGCGGACAAAATTCACAACGT 60.596 47.619 0.00 0.00 0.00 3.99
3626 4272 2.793237 GCGGACAAAATTCACAACGTGT 60.793 45.455 0.00 0.00 34.79 4.49
3649 4296 3.517602 TCAGTGTCGAACCATAAATCCG 58.482 45.455 0.00 0.00 0.00 4.18
3683 4330 2.031333 CAGCAGTTCAAGCCTCTTTGTC 60.031 50.000 0.00 0.00 0.00 3.18
3693 4340 1.321474 CCTCTTTGTCTGCCAAGCAA 58.679 50.000 0.00 0.00 38.41 3.91
3694 4341 1.682854 CCTCTTTGTCTGCCAAGCAAA 59.317 47.619 0.00 0.00 38.41 3.68
3696 4343 1.067516 TCTTTGTCTGCCAAGCAAAGC 59.932 47.619 12.88 0.00 41.83 3.51
3697 4344 0.822811 TTTGTCTGCCAAGCAAAGCA 59.177 45.000 0.00 0.00 38.41 3.91
3698 4345 0.822811 TTGTCTGCCAAGCAAAGCAA 59.177 45.000 0.00 0.00 38.41 3.91
3699 4346 0.386476 TGTCTGCCAAGCAAAGCAAG 59.614 50.000 0.00 0.00 38.41 4.01
3700 4347 0.386838 GTCTGCCAAGCAAAGCAAGT 59.613 50.000 0.00 0.00 38.41 3.16
3801 4448 5.721000 AGTTATGAAAAATGGGAATGCTCCA 59.279 36.000 0.00 0.00 44.51 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
665 673 2.621338 GATCTGGCTGATTTCGTGTGA 58.379 47.619 8.36 0.00 35.14 3.58
769 777 9.787435 TGTACAGTGGTTAAGACAATTTTATCT 57.213 29.630 0.00 0.00 0.00 1.98
772 780 8.293867 GCATGTACAGTGGTTAAGACAATTTTA 58.706 33.333 0.33 0.00 0.00 1.52
773 781 7.145323 GCATGTACAGTGGTTAAGACAATTTT 58.855 34.615 0.33 0.00 0.00 1.82
774 782 6.294508 GGCATGTACAGTGGTTAAGACAATTT 60.295 38.462 0.33 0.00 0.00 1.82
775 783 5.183140 GGCATGTACAGTGGTTAAGACAATT 59.817 40.000 0.33 0.00 0.00 2.32
776 784 4.700213 GGCATGTACAGTGGTTAAGACAAT 59.300 41.667 0.33 0.00 0.00 2.71
777 785 4.069304 GGCATGTACAGTGGTTAAGACAA 58.931 43.478 0.33 0.00 0.00 3.18
778 786 3.071747 TGGCATGTACAGTGGTTAAGACA 59.928 43.478 0.33 0.00 0.00 3.41
779 787 3.670625 TGGCATGTACAGTGGTTAAGAC 58.329 45.455 0.33 0.00 0.00 3.01
780 788 3.307410 CCTGGCATGTACAGTGGTTAAGA 60.307 47.826 15.33 0.00 34.16 2.10
781 789 3.009723 CCTGGCATGTACAGTGGTTAAG 58.990 50.000 15.33 0.00 34.16 1.85
782 790 2.878117 GCCTGGCATGTACAGTGGTTAA 60.878 50.000 15.17 0.00 34.16 2.01
783 791 1.339631 GCCTGGCATGTACAGTGGTTA 60.340 52.381 15.17 0.00 34.16 2.85
784 792 0.609131 GCCTGGCATGTACAGTGGTT 60.609 55.000 15.17 0.00 34.16 3.67
785 793 1.002134 GCCTGGCATGTACAGTGGT 60.002 57.895 15.17 0.00 34.16 4.16
786 794 1.750399 GGCCTGGCATGTACAGTGG 60.750 63.158 22.05 0.15 34.16 4.00
787 795 2.108514 CGGCCTGGCATGTACAGTG 61.109 63.158 22.05 1.44 34.16 3.66
788 796 2.268920 CGGCCTGGCATGTACAGT 59.731 61.111 22.05 0.00 34.16 3.55
789 797 2.108514 CACGGCCTGGCATGTACAG 61.109 63.158 22.05 11.24 35.74 2.74
790 798 2.046411 CACGGCCTGGCATGTACA 60.046 61.111 22.05 0.00 0.00 2.90
791 799 2.046314 ACACGGCCTGGCATGTAC 60.046 61.111 22.06 4.11 29.73 2.90
792 800 2.046411 CACACGGCCTGGCATGTA 60.046 61.111 22.67 0.00 30.25 2.29
804 812 3.112075 CTAGCACCGCACCACACG 61.112 66.667 0.00 0.00 0.00 4.49
805 813 3.423154 GCTAGCACCGCACCACAC 61.423 66.667 10.63 0.00 0.00 3.82
813 821 4.778415 ACGAGCACGCTAGCACCG 62.778 66.667 16.45 11.87 43.96 4.94
814 822 3.181967 CACGAGCACGCTAGCACC 61.182 66.667 16.45 1.65 43.96 5.01
815 823 3.181967 CCACGAGCACGCTAGCAC 61.182 66.667 16.45 3.22 43.96 4.40
816 824 4.435436 CCCACGAGCACGCTAGCA 62.435 66.667 16.45 0.00 43.96 3.49
818 826 4.135153 AGCCCACGAGCACGCTAG 62.135 66.667 2.62 0.00 43.96 3.42
819 827 4.435436 CAGCCCACGAGCACGCTA 62.435 66.667 2.62 0.00 43.96 4.26
835 843 3.687102 GCAGTGCTTGGCATGCCA 61.687 61.111 35.59 35.59 45.63 4.92
836 844 4.789075 CGCAGTGCTTGGCATGCC 62.789 66.667 30.54 30.54 41.91 4.40
841 849 2.637715 CTAATCGCGCAGTGCTTGGC 62.638 60.000 14.33 8.50 43.27 4.52
842 850 1.349627 CTAATCGCGCAGTGCTTGG 59.650 57.895 14.33 1.96 43.27 3.61
843 851 1.349627 CCTAATCGCGCAGTGCTTG 59.650 57.895 14.33 5.29 43.27 4.01
844 852 2.464459 GCCTAATCGCGCAGTGCTT 61.464 57.895 14.33 2.89 43.27 3.91
845 853 2.892425 GCCTAATCGCGCAGTGCT 60.892 61.111 14.33 0.00 43.27 4.40
846 854 2.892425 AGCCTAATCGCGCAGTGC 60.892 61.111 8.75 4.58 38.30 4.40
847 855 1.811266 ACAGCCTAATCGCGCAGTG 60.811 57.895 8.75 0.00 40.84 3.66
848 856 1.811266 CACAGCCTAATCGCGCAGT 60.811 57.895 8.75 0.00 0.00 4.40
849 857 1.811266 ACACAGCCTAATCGCGCAG 60.811 57.895 8.75 0.00 0.00 5.18
850 858 2.100031 CACACAGCCTAATCGCGCA 61.100 57.895 8.75 0.00 0.00 6.09
851 859 2.703409 CACACAGCCTAATCGCGC 59.297 61.111 0.00 0.00 0.00 6.86
852 860 1.447838 ACCACACAGCCTAATCGCG 60.448 57.895 0.00 0.00 0.00 5.87
853 861 1.982073 GCACCACACAGCCTAATCGC 61.982 60.000 0.00 0.00 0.00 4.58
854 862 2.089854 GCACCACACAGCCTAATCG 58.910 57.895 0.00 0.00 0.00 3.34
862 870 3.349006 GAGCACGGCACCACACAG 61.349 66.667 0.00 0.00 0.00 3.66
863 871 4.168291 TGAGCACGGCACCACACA 62.168 61.111 0.00 0.00 0.00 3.72
864 872 3.649986 GTGAGCACGGCACCACAC 61.650 66.667 12.70 0.00 35.57 3.82
877 885 3.200593 GGCATGCCAGCTCGTGAG 61.201 66.667 32.08 0.00 35.81 3.51
878 886 4.019312 TGGCATGCCAGCTCGTGA 62.019 61.111 35.59 10.49 41.89 4.35
904 912 3.061848 AAAGTTGGGCATCCGCGG 61.062 61.111 22.12 22.12 39.92 6.46
905 913 2.179018 CAAAGTTGGGCATCCGCG 59.821 61.111 0.00 0.00 39.92 6.46
906 914 2.125952 GCAAAGTTGGGCATCCGC 60.126 61.111 0.00 0.00 35.24 5.54
907 915 0.962356 AGAGCAAAGTTGGGCATCCG 60.962 55.000 3.00 0.00 35.24 4.18
908 916 2.128771 TAGAGCAAAGTTGGGCATCC 57.871 50.000 3.00 0.00 0.00 3.51
909 917 4.725790 AATTAGAGCAAAGTTGGGCATC 57.274 40.909 3.00 0.00 0.00 3.91
910 918 6.603940 TTTAATTAGAGCAAAGTTGGGCAT 57.396 33.333 3.00 0.00 0.00 4.40
911 919 6.412362 TTTTAATTAGAGCAAAGTTGGGCA 57.588 33.333 3.00 0.00 0.00 5.36
932 940 8.318412 AGTGGTAGTGAAATTTCCTTTGTTTTT 58.682 29.630 15.48 0.00 0.00 1.94
933 941 7.847096 AGTGGTAGTGAAATTTCCTTTGTTTT 58.153 30.769 15.48 0.00 0.00 2.43
934 942 7.417456 GGAGTGGTAGTGAAATTTCCTTTGTTT 60.417 37.037 15.48 0.00 0.00 2.83
935 943 6.040504 GGAGTGGTAGTGAAATTTCCTTTGTT 59.959 38.462 15.48 0.00 0.00 2.83
936 944 5.535030 GGAGTGGTAGTGAAATTTCCTTTGT 59.465 40.000 15.48 0.00 0.00 2.83
937 945 5.534654 TGGAGTGGTAGTGAAATTTCCTTTG 59.465 40.000 15.48 0.00 0.00 2.77
938 946 5.535030 GTGGAGTGGTAGTGAAATTTCCTTT 59.465 40.000 15.48 3.91 0.00 3.11
939 947 5.070685 GTGGAGTGGTAGTGAAATTTCCTT 58.929 41.667 15.48 6.29 0.00 3.36
940 948 4.351111 AGTGGAGTGGTAGTGAAATTTCCT 59.649 41.667 15.48 13.51 0.00 3.36
941 949 4.652822 AGTGGAGTGGTAGTGAAATTTCC 58.347 43.478 15.48 7.09 0.00 3.13
942 950 4.695928 GGAGTGGAGTGGTAGTGAAATTTC 59.304 45.833 11.41 11.41 0.00 2.17
943 951 4.652822 GGAGTGGAGTGGTAGTGAAATTT 58.347 43.478 0.00 0.00 0.00 1.82
944 952 3.306780 CGGAGTGGAGTGGTAGTGAAATT 60.307 47.826 0.00 0.00 0.00 1.82
945 953 2.233922 CGGAGTGGAGTGGTAGTGAAAT 59.766 50.000 0.00 0.00 0.00 2.17
946 954 1.616865 CGGAGTGGAGTGGTAGTGAAA 59.383 52.381 0.00 0.00 0.00 2.69
947 955 1.254026 CGGAGTGGAGTGGTAGTGAA 58.746 55.000 0.00 0.00 0.00 3.18
948 956 1.248785 GCGGAGTGGAGTGGTAGTGA 61.249 60.000 0.00 0.00 0.00 3.41
949 957 1.215647 GCGGAGTGGAGTGGTAGTG 59.784 63.158 0.00 0.00 0.00 2.74
950 958 1.982938 GGCGGAGTGGAGTGGTAGT 60.983 63.158 0.00 0.00 0.00 2.73
951 959 2.893398 GGCGGAGTGGAGTGGTAG 59.107 66.667 0.00 0.00 0.00 3.18
952 960 3.066190 CGGCGGAGTGGAGTGGTA 61.066 66.667 0.00 0.00 0.00 3.25
953 961 4.988716 TCGGCGGAGTGGAGTGGT 62.989 66.667 7.21 0.00 0.00 4.16
954 962 2.907897 GATTCGGCGGAGTGGAGTGG 62.908 65.000 7.21 0.00 0.00 4.00
955 963 1.519455 GATTCGGCGGAGTGGAGTG 60.519 63.158 7.21 0.00 0.00 3.51
956 964 2.722201 GGATTCGGCGGAGTGGAGT 61.722 63.158 7.21 0.00 0.00 3.85
957 965 2.107141 GGATTCGGCGGAGTGGAG 59.893 66.667 7.21 0.00 0.00 3.86
958 966 3.467226 GGGATTCGGCGGAGTGGA 61.467 66.667 7.21 0.00 0.00 4.02
959 967 3.447025 GAGGGATTCGGCGGAGTGG 62.447 68.421 7.21 0.00 0.00 4.00
960 968 2.032860 ATGAGGGATTCGGCGGAGTG 62.033 60.000 7.21 0.00 0.00 3.51
961 969 1.749334 GATGAGGGATTCGGCGGAGT 61.749 60.000 7.21 0.00 0.00 3.85
962 970 1.005630 GATGAGGGATTCGGCGGAG 60.006 63.158 7.21 0.00 0.00 4.63
963 971 1.121407 ATGATGAGGGATTCGGCGGA 61.121 55.000 7.21 0.00 0.00 5.54
964 972 0.250467 AATGATGAGGGATTCGGCGG 60.250 55.000 7.21 0.00 0.00 6.13
965 973 1.151668 GAATGATGAGGGATTCGGCG 58.848 55.000 0.00 0.00 0.00 6.46
966 974 1.528129 GGAATGATGAGGGATTCGGC 58.472 55.000 0.00 0.00 30.54 5.54
967 975 1.271597 GGGGAATGATGAGGGATTCGG 60.272 57.143 0.00 0.00 30.54 4.30
968 976 1.421268 TGGGGAATGATGAGGGATTCG 59.579 52.381 0.00 0.00 30.54 3.34
969 977 3.822097 ATGGGGAATGATGAGGGATTC 57.178 47.619 0.00 0.00 0.00 2.52
970 978 3.731130 AGAATGGGGAATGATGAGGGATT 59.269 43.478 0.00 0.00 0.00 3.01
971 979 3.075582 CAGAATGGGGAATGATGAGGGAT 59.924 47.826 0.00 0.00 0.00 3.85
972 980 2.444388 CAGAATGGGGAATGATGAGGGA 59.556 50.000 0.00 0.00 0.00 4.20
973 981 2.872732 CAGAATGGGGAATGATGAGGG 58.127 52.381 0.00 0.00 0.00 4.30
974 982 2.236766 GCAGAATGGGGAATGATGAGG 58.763 52.381 0.00 0.00 35.86 3.86
975 983 2.940158 TGCAGAATGGGGAATGATGAG 58.060 47.619 0.00 0.00 35.86 2.90
976 984 3.385314 TTGCAGAATGGGGAATGATGA 57.615 42.857 0.00 0.00 35.86 2.92
977 985 3.006537 GGATTGCAGAATGGGGAATGATG 59.993 47.826 0.00 0.00 35.86 3.07
978 986 3.236896 GGATTGCAGAATGGGGAATGAT 58.763 45.455 0.00 0.00 35.86 2.45
979 987 2.669781 GGATTGCAGAATGGGGAATGA 58.330 47.619 0.00 0.00 35.86 2.57
980 988 1.690352 GGGATTGCAGAATGGGGAATG 59.310 52.381 0.00 0.00 35.86 2.67
981 989 1.291637 TGGGATTGCAGAATGGGGAAT 59.708 47.619 0.00 0.00 35.86 3.01
982 990 0.709397 TGGGATTGCAGAATGGGGAA 59.291 50.000 0.00 0.00 35.86 3.97
983 991 0.033208 GTGGGATTGCAGAATGGGGA 60.033 55.000 0.00 0.00 35.86 4.81
984 992 0.032813 AGTGGGATTGCAGAATGGGG 60.033 55.000 0.00 0.00 35.86 4.96
985 993 1.396653 GAGTGGGATTGCAGAATGGG 58.603 55.000 0.00 0.00 35.86 4.00
986 994 1.064166 AGGAGTGGGATTGCAGAATGG 60.064 52.381 0.00 0.00 35.86 3.16
987 995 2.295885 GAGGAGTGGGATTGCAGAATG 58.704 52.381 0.00 0.00 40.87 2.67
988 996 1.213926 GGAGGAGTGGGATTGCAGAAT 59.786 52.381 0.00 0.00 0.00 2.40
989 997 0.620556 GGAGGAGTGGGATTGCAGAA 59.379 55.000 0.00 0.00 0.00 3.02
990 998 1.617018 CGGAGGAGTGGGATTGCAGA 61.617 60.000 0.00 0.00 0.00 4.26
991 999 1.153289 CGGAGGAGTGGGATTGCAG 60.153 63.158 0.00 0.00 0.00 4.41
992 1000 2.989639 CGGAGGAGTGGGATTGCA 59.010 61.111 0.00 0.00 0.00 4.08
993 1001 2.514824 GCGGAGGAGTGGGATTGC 60.515 66.667 0.00 0.00 0.00 3.56
994 1002 2.190578 GGCGGAGGAGTGGGATTG 59.809 66.667 0.00 0.00 0.00 2.67
995 1003 2.285368 TGGCGGAGGAGTGGGATT 60.285 61.111 0.00 0.00 0.00 3.01
996 1004 3.083997 GTGGCGGAGGAGTGGGAT 61.084 66.667 0.00 0.00 0.00 3.85
999 1007 4.394712 GTGGTGGCGGAGGAGTGG 62.395 72.222 0.00 0.00 0.00 4.00
1000 1008 4.394712 GGTGGTGGCGGAGGAGTG 62.395 72.222 0.00 0.00 0.00 3.51
1001 1009 4.954118 TGGTGGTGGCGGAGGAGT 62.954 66.667 0.00 0.00 0.00 3.85
1002 1010 4.394712 GTGGTGGTGGCGGAGGAG 62.395 72.222 0.00 0.00 0.00 3.69
1008 1016 4.885270 TTGGTGGTGGTGGTGGCG 62.885 66.667 0.00 0.00 0.00 5.69
1009 1017 2.912025 CTTGGTGGTGGTGGTGGC 60.912 66.667 0.00 0.00 0.00 5.01
1010 1018 2.912025 GCTTGGTGGTGGTGGTGG 60.912 66.667 0.00 0.00 0.00 4.61
1011 1019 2.912025 GGCTTGGTGGTGGTGGTG 60.912 66.667 0.00 0.00 0.00 4.17
1012 1020 2.777960 ATGGCTTGGTGGTGGTGGT 61.778 57.895 0.00 0.00 0.00 4.16
1013 1021 2.118076 ATGGCTTGGTGGTGGTGG 59.882 61.111 0.00 0.00 0.00 4.61
1014 1022 2.277591 CCATGGCTTGGTGGTGGTG 61.278 63.158 11.13 0.00 40.99 4.17
1015 1023 1.803453 ATCCATGGCTTGGTGGTGGT 61.803 55.000 17.94 0.00 46.52 4.16
1016 1024 1.000739 ATCCATGGCTTGGTGGTGG 59.999 57.895 17.94 0.35 46.52 4.61
1017 1025 1.952102 GCATCCATGGCTTGGTGGTG 61.952 60.000 17.94 15.36 46.52 4.17
1018 1026 1.683365 GCATCCATGGCTTGGTGGT 60.683 57.895 17.94 4.49 46.52 4.16
1019 1027 2.777972 CGCATCCATGGCTTGGTGG 61.778 63.158 17.94 12.48 46.52 4.61
1020 1028 2.802792 CGCATCCATGGCTTGGTG 59.197 61.111 17.94 15.53 46.52 4.17
1021 1029 3.142838 GCGCATCCATGGCTTGGT 61.143 61.111 17.94 4.32 46.52 3.67
1023 1031 4.260355 CCGCGCATCCATGGCTTG 62.260 66.667 6.96 8.53 0.00 4.01
1076 1084 0.323629 GTGGTGAATCTTGGTCCGGA 59.676 55.000 0.00 0.00 0.00 5.14
1078 1086 1.019278 CGGTGGTGAATCTTGGTCCG 61.019 60.000 0.00 0.00 0.00 4.79
1079 1087 0.676782 CCGGTGGTGAATCTTGGTCC 60.677 60.000 0.00 0.00 0.00 4.46
1111 1119 3.350909 TTGATGAGGTCGACGCCGG 62.351 63.158 9.92 0.00 36.24 6.13
1116 1124 1.810030 GGGCGTTGATGAGGTCGAC 60.810 63.158 7.13 7.13 37.80 4.20
1261 1269 2.743928 GCTGGCGAGACAAGGTGG 60.744 66.667 0.00 0.00 0.00 4.61
1302 1310 3.082579 GCTCGGCGAGGATCTTGGT 62.083 63.158 35.03 0.00 0.00 3.67
1344 1352 2.444256 GGCGGATGTAGGGGAGCTT 61.444 63.158 0.00 0.00 0.00 3.74
1363 1371 1.546834 GATCTTGCCGTAGTCACGTC 58.453 55.000 0.00 0.00 46.96 4.34
1367 1375 0.098200 CGTCGATCTTGCCGTAGTCA 59.902 55.000 0.00 0.00 0.00 3.41
1387 1395 2.045926 CCTGGGAACGAAGCCAGG 60.046 66.667 0.00 0.00 46.12 4.45
1418 1426 4.154347 CCGAGGTGGAGCTCCTGC 62.154 72.222 32.28 23.55 42.00 4.85
1513 1560 2.279851 CAGTCGGTGAACGTGGCA 60.280 61.111 0.00 0.00 44.69 4.92
1519 1566 0.521735 GGAAATGGCAGTCGGTGAAC 59.478 55.000 0.00 0.00 0.00 3.18
1524 1571 2.824041 CGGGGAAATGGCAGTCGG 60.824 66.667 0.00 0.00 0.00 4.79
1526 1573 0.322546 AAGTCGGGGAAATGGCAGTC 60.323 55.000 0.00 0.00 0.00 3.51
1558 1605 4.219070 TGCTGGAGATGTGAAAAATTCAGG 59.781 41.667 0.00 0.00 41.01 3.86
1568 1615 1.514553 CGAGCTGCTGGAGATGTGA 59.485 57.895 7.01 0.00 0.00 3.58
1577 1624 1.434622 CCATACAAGCCGAGCTGCTG 61.435 60.000 7.01 0.00 41.80 4.41
1595 1642 2.046217 GGCCGAGAAAGTGACCCC 60.046 66.667 0.00 0.00 0.00 4.95
1596 1643 0.955919 CAAGGCCGAGAAAGTGACCC 60.956 60.000 0.00 0.00 0.00 4.46
1641 1688 1.378250 ATGGTGAGCTGCTTGAGGC 60.378 57.895 2.53 0.00 42.22 4.70
1661 1708 1.003355 CCAAGATGGTGACCACGCT 60.003 57.895 6.40 4.48 35.80 5.07
1665 1712 0.984230 GTCCTCCAAGATGGTGACCA 59.016 55.000 6.84 6.84 39.03 4.02
1677 1724 2.506957 TTGTGCAGAGCGTCCTCCA 61.507 57.895 0.00 0.00 38.96 3.86
1680 1727 0.952497 CATGTTGTGCAGAGCGTCCT 60.952 55.000 0.00 0.00 0.00 3.85
1771 1818 2.623418 TGCTCCTAAGAGTCTGGGAA 57.377 50.000 13.85 1.25 42.59 3.97
1776 1823 2.445682 ACCGATGCTCCTAAGAGTCT 57.554 50.000 0.00 0.00 42.59 3.24
1795 1842 3.244215 CCTGTGTGTAAGGAGCAGAGAAA 60.244 47.826 0.00 0.00 36.91 2.52
1905 1985 1.314534 TGCTCGAATTACCCGGACGA 61.315 55.000 0.73 3.40 0.00 4.20
1981 2061 2.944349 TGTTACCTGAAAAACCGTGGTC 59.056 45.455 0.00 0.00 32.74 4.02
2016 2099 6.072286 ACTGATGTGAATTCTGATTGTTGGAC 60.072 38.462 7.05 0.00 0.00 4.02
2021 2104 9.017509 ACAAATACTGATGTGAATTCTGATTGT 57.982 29.630 7.05 2.08 0.00 2.71
2038 2121 7.542130 GGCAAACTGAAATAAGGACAAATACTG 59.458 37.037 0.00 0.00 0.00 2.74
2057 2154 5.549742 TTCCTGATGAAAAATGGCAAACT 57.450 34.783 0.00 0.00 0.00 2.66
2235 2337 1.135603 CATGCCGATGTTGACAGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
2236 2338 1.805943 TCATGCCGATGTTGACAGTTG 59.194 47.619 0.00 0.00 0.00 3.16
2271 2376 5.546499 AGAGTGAAGACAGGTTAATGGGTTA 59.454 40.000 0.00 0.00 0.00 2.85
2273 2378 3.910627 AGAGTGAAGACAGGTTAATGGGT 59.089 43.478 0.00 0.00 0.00 4.51
2276 2381 6.260936 ACAAACAGAGTGAAGACAGGTTAATG 59.739 38.462 0.00 0.00 0.00 1.90
2277 2382 6.357367 ACAAACAGAGTGAAGACAGGTTAAT 58.643 36.000 0.00 0.00 0.00 1.40
2279 2384 5.353394 ACAAACAGAGTGAAGACAGGTTA 57.647 39.130 0.00 0.00 0.00 2.85
2282 2389 4.446371 AGAACAAACAGAGTGAAGACAGG 58.554 43.478 0.00 0.00 0.00 4.00
2326 2439 4.087907 TGCACATTTTTCATCTCCATCCA 58.912 39.130 0.00 0.00 0.00 3.41
2419 2532 3.202818 TCAACATCTAGCATGTCCCCAAT 59.797 43.478 7.86 0.00 0.00 3.16
2432 2545 7.168972 CGAAAAACTTGGCAAATTCAACATCTA 59.831 33.333 0.00 0.00 0.00 1.98
2508 2624 2.281831 TTCCATTGGCGGTCGCAA 60.282 55.556 17.21 2.52 44.11 4.85
2518 2634 5.105635 ACATGTGTTGATTAGGCTTCCATTG 60.106 40.000 0.00 0.00 0.00 2.82
2527 2643 5.878332 TGTAAGCACATGTGTTGATTAGG 57.122 39.130 26.01 0.00 0.00 2.69
2544 2660 2.072298 GCTCTGCTGTCCACTTGTAAG 58.928 52.381 0.00 0.00 0.00 2.34
2592 2708 8.988060 TCATCTCCTAAAACATCCATACAACTA 58.012 33.333 0.00 0.00 0.00 2.24
2596 2712 7.194112 TGTCATCTCCTAAAACATCCATACA 57.806 36.000 0.00 0.00 0.00 2.29
2599 2715 5.591877 GCTTGTCATCTCCTAAAACATCCAT 59.408 40.000 0.00 0.00 0.00 3.41
2600 2716 4.943705 GCTTGTCATCTCCTAAAACATCCA 59.056 41.667 0.00 0.00 0.00 3.41
2606 2725 4.501071 GGTACGCTTGTCATCTCCTAAAA 58.499 43.478 0.00 0.00 0.00 1.52
2734 2857 0.327259 AGAAGGGCGGGGTAACTTTC 59.673 55.000 0.00 0.00 0.00 2.62
2740 2863 0.326238 AGAATCAGAAGGGCGGGGTA 60.326 55.000 0.00 0.00 0.00 3.69
2748 2871 6.522946 TCATTGCATAGAGAGAATCAGAAGG 58.477 40.000 0.00 0.00 37.82 3.46
2796 2919 1.302993 TCTAGGCGGGCCACAAAAC 60.303 57.895 12.97 0.00 38.92 2.43
2810 2933 3.182967 CGAGCTTAAAGGTGTGCTCTAG 58.817 50.000 11.23 0.00 46.70 2.43
2811 2934 2.094182 CCGAGCTTAAAGGTGTGCTCTA 60.094 50.000 11.23 0.00 46.70 2.43
2830 2954 0.391927 TGACGGTGGATAAAAGCCCG 60.392 55.000 0.00 0.00 44.06 6.13
2844 2968 2.412870 TGCACATTCTGTAGTTGACGG 58.587 47.619 0.00 0.00 35.52 4.79
2845 2969 3.740832 TCTTGCACATTCTGTAGTTGACG 59.259 43.478 0.00 0.00 0.00 4.35
2876 3002 2.464796 AAACTTCCGAAACCCCCTTT 57.535 45.000 0.00 0.00 0.00 3.11
2886 3012 5.294306 CAGCATAGCAGAAATAAACTTCCGA 59.706 40.000 0.00 0.00 0.00 4.55
2887 3013 5.065218 ACAGCATAGCAGAAATAAACTTCCG 59.935 40.000 0.00 0.00 0.00 4.30
2888 3014 6.261118 CACAGCATAGCAGAAATAAACTTCC 58.739 40.000 0.00 0.00 0.00 3.46
2903 3031 4.692625 AGTTAACACTCAAGCACAGCATAG 59.307 41.667 8.61 0.00 0.00 2.23
2905 3033 3.480470 AGTTAACACTCAAGCACAGCAT 58.520 40.909 8.61 0.00 0.00 3.79
2931 3189 3.120649 CGCTACAACCTACACAGAAAAGC 60.121 47.826 0.00 0.00 0.00 3.51
2952 3213 4.027572 TCAAACAGAAAAGAAACAGCCG 57.972 40.909 0.00 0.00 0.00 5.52
2989 3250 1.000843 TGCTACTGCTGGTGTACACAG 59.999 52.381 26.51 20.75 40.48 3.66
3015 3276 5.865085 AGTGTAAACAGAAACAGCAGGATA 58.135 37.500 0.00 0.00 0.00 2.59
3016 3277 4.718961 AGTGTAAACAGAAACAGCAGGAT 58.281 39.130 0.00 0.00 0.00 3.24
3018 3279 4.083802 GCTAGTGTAAACAGAAACAGCAGG 60.084 45.833 0.00 0.00 0.00 4.85
3019 3280 4.511454 TGCTAGTGTAAACAGAAACAGCAG 59.489 41.667 0.00 0.00 0.00 4.24
3022 3283 8.774586 AGTAATTGCTAGTGTAAACAGAAACAG 58.225 33.333 0.00 0.00 0.00 3.16
3043 3304 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
3066 3327 7.824289 CCATAGTGAAATCTCCACAAAGACTTA 59.176 37.037 0.00 0.00 37.01 2.24
3067 3328 6.656693 CCATAGTGAAATCTCCACAAAGACTT 59.343 38.462 0.00 0.00 37.01 3.01
3068 3329 6.013379 TCCATAGTGAAATCTCCACAAAGACT 60.013 38.462 0.00 0.00 37.01 3.24
3072 3333 5.222027 TGGTCCATAGTGAAATCTCCACAAA 60.222 40.000 0.00 0.00 37.01 2.83
3074 3335 3.843619 TGGTCCATAGTGAAATCTCCACA 59.156 43.478 0.00 0.00 37.01 4.17
3075 3336 4.192317 GTGGTCCATAGTGAAATCTCCAC 58.808 47.826 0.00 0.00 36.53 4.02
3076 3337 3.843619 TGTGGTCCATAGTGAAATCTCCA 59.156 43.478 0.00 0.00 0.00 3.86
3077 3338 4.487714 TGTGGTCCATAGTGAAATCTCC 57.512 45.455 0.00 0.00 0.00 3.71
3078 3339 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
3079 3340 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
3081 3342 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
3082 3343 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
3084 3345 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
3085 3346 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
3087 3348 5.410924 CATACATCCGTATGTGGTCCATAG 58.589 45.833 3.56 0.00 46.70 2.23
3088 3349 5.400066 CATACATCCGTATGTGGTCCATA 57.600 43.478 3.56 0.00 46.70 2.74
3089 3350 4.271696 CATACATCCGTATGTGGTCCAT 57.728 45.455 3.56 0.00 46.70 3.41
3090 3351 3.744238 CATACATCCGTATGTGGTCCA 57.256 47.619 3.56 0.00 46.70 4.02
3098 3359 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
3101 3362 6.092670 CCCTAAAATGCATCTACATACATCCG 59.907 42.308 0.00 0.00 0.00 4.18
3102 3363 6.942576 ACCCTAAAATGCATCTACATACATCC 59.057 38.462 0.00 0.00 0.00 3.51
3103 3364 7.445402 ACACCCTAAAATGCATCTACATACATC 59.555 37.037 0.00 0.00 0.00 3.06
3104 3365 7.290061 ACACCCTAAAATGCATCTACATACAT 58.710 34.615 0.00 0.00 0.00 2.29
3105 3366 6.658849 ACACCCTAAAATGCATCTACATACA 58.341 36.000 0.00 0.00 0.00 2.29
3106 3367 8.148351 TCTACACCCTAAAATGCATCTACATAC 58.852 37.037 0.00 0.00 0.00 2.39
3107 3368 8.257602 TCTACACCCTAAAATGCATCTACATA 57.742 34.615 0.00 0.00 0.00 2.29
3108 3369 7.136822 TCTACACCCTAAAATGCATCTACAT 57.863 36.000 0.00 0.00 0.00 2.29
3109 3370 6.553953 TCTACACCCTAAAATGCATCTACA 57.446 37.500 0.00 0.00 0.00 2.74
3110 3371 7.715249 TGAATCTACACCCTAAAATGCATCTAC 59.285 37.037 0.00 0.00 0.00 2.59
3111 3372 7.715249 GTGAATCTACACCCTAAAATGCATCTA 59.285 37.037 0.00 0.00 35.07 1.98
3112 3373 6.543831 GTGAATCTACACCCTAAAATGCATCT 59.456 38.462 0.00 0.00 35.07 2.90
3113 3374 6.543831 AGTGAATCTACACCCTAAAATGCATC 59.456 38.462 0.00 0.00 41.12 3.91
3114 3375 6.426587 AGTGAATCTACACCCTAAAATGCAT 58.573 36.000 0.00 0.00 41.12 3.96
3115 3376 5.815581 AGTGAATCTACACCCTAAAATGCA 58.184 37.500 0.00 0.00 41.12 3.96
3116 3377 6.759497 AAGTGAATCTACACCCTAAAATGC 57.241 37.500 0.00 0.00 41.12 3.56
3120 3381 8.736244 GCAAAATAAGTGAATCTACACCCTAAA 58.264 33.333 0.00 0.00 41.12 1.85
3121 3382 8.107095 AGCAAAATAAGTGAATCTACACCCTAA 58.893 33.333 0.00 0.00 41.12 2.69
3122 3383 7.630082 AGCAAAATAAGTGAATCTACACCCTA 58.370 34.615 0.00 0.00 41.12 3.53
3123 3384 6.485171 AGCAAAATAAGTGAATCTACACCCT 58.515 36.000 0.00 0.00 41.12 4.34
3124 3385 6.183360 GGAGCAAAATAAGTGAATCTACACCC 60.183 42.308 0.00 0.00 41.12 4.61
3125 3386 6.456988 CGGAGCAAAATAAGTGAATCTACACC 60.457 42.308 0.00 0.00 41.12 4.16
3126 3387 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
3127 3388 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
3128 3389 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
3129 3390 7.985184 ACATACGGAGCAAAATAAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
3130 3391 6.823689 ACATACGGAGCAAAATAAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
3131 3392 7.016361 ACATACGGAGCAAAATAAGTGAATC 57.984 36.000 0.00 0.00 0.00 2.52
3132 3393 7.769044 ACTACATACGGAGCAAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
3133 3394 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
3134 3395 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
3135 3396 6.018994 GGACTACATACGGAGCAAAATAAGTG 60.019 42.308 0.00 0.00 0.00 3.16
3136 3397 6.047231 GGACTACATACGGAGCAAAATAAGT 58.953 40.000 0.00 0.00 0.00 2.24
3137 3398 6.046593 TGGACTACATACGGAGCAAAATAAG 58.953 40.000 0.00 0.00 0.00 1.73
3138 3399 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
3139 3400 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
3140 3401 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3141 3402 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3142 3403 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
3143 3404 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
3144 3405 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
3145 3406 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
3146 3407 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
3147 3408 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
3158 3419 5.187186 GTCTTTGTAGAGGTTCCACTATGGA 59.813 44.000 0.00 0.00 46.61 3.41
3159 3420 5.187967 AGTCTTTGTAGAGGTTCCACTATGG 59.812 44.000 0.00 0.00 39.43 2.74
3160 3421 6.287589 AGTCTTTGTAGAGGTTCCACTATG 57.712 41.667 0.00 0.00 0.00 2.23
3161 3422 6.936968 AAGTCTTTGTAGAGGTTCCACTAT 57.063 37.500 0.00 0.00 0.00 2.12
3162 3423 9.710818 ATATAAGTCTTTGTAGAGGTTCCACTA 57.289 33.333 0.00 0.00 0.00 2.74
3163 3424 6.936968 ATAAGTCTTTGTAGAGGTTCCACT 57.063 37.500 0.00 0.00 0.00 4.00
3164 3425 9.668497 AAATATAAGTCTTTGTAGAGGTTCCAC 57.332 33.333 0.00 0.00 0.00 4.02
3175 3436 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
3176 3437 8.827677 CCCTCCGTTTCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
3177 3438 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
3178 3439 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
3179 3440 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3180 3441 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3181 3442 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3182 3443 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3183 3444 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3184 3445 8.636213 CAAGTACTCCCTCCGTTTCTAAATATA 58.364 37.037 0.00 0.00 0.00 0.86
3185 3446 7.418712 CCAAGTACTCCCTCCGTTTCTAAATAT 60.419 40.741 0.00 0.00 0.00 1.28
3186 3447 6.127253 CCAAGTACTCCCTCCGTTTCTAAATA 60.127 42.308 0.00 0.00 0.00 1.40
3187 3448 5.338137 CCAAGTACTCCCTCCGTTTCTAAAT 60.338 44.000 0.00 0.00 0.00 1.40
3188 3449 4.020839 CCAAGTACTCCCTCCGTTTCTAAA 60.021 45.833 0.00 0.00 0.00 1.85
3189 3450 3.512724 CCAAGTACTCCCTCCGTTTCTAA 59.487 47.826 0.00 0.00 0.00 2.10
3190 3451 3.094572 CCAAGTACTCCCTCCGTTTCTA 58.905 50.000 0.00 0.00 0.00 2.10
3191 3452 1.900486 CCAAGTACTCCCTCCGTTTCT 59.100 52.381 0.00 0.00 0.00 2.52
3192 3453 1.622312 ACCAAGTACTCCCTCCGTTTC 59.378 52.381 0.00 0.00 0.00 2.78
3193 3454 1.725803 ACCAAGTACTCCCTCCGTTT 58.274 50.000 0.00 0.00 0.00 3.60
3194 3455 2.610438 TACCAAGTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
3195 3456 2.024655 TGATACCAAGTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
3196 3457 2.623889 CTGATACCAAGTACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
3197 3458 2.365941 GCTGATACCAAGTACTCCCTCC 59.634 54.545 0.00 0.00 0.00 4.30
3198 3459 3.301274 AGCTGATACCAAGTACTCCCTC 58.699 50.000 0.00 0.00 0.00 4.30
3199 3460 3.406512 AGCTGATACCAAGTACTCCCT 57.593 47.619 0.00 0.00 0.00 4.20
3200 3461 5.810080 AATAGCTGATACCAAGTACTCCC 57.190 43.478 0.00 0.00 0.00 4.30
3229 3490 5.243730 GGCATGCCTTCATTTAAGCCTATAA 59.756 40.000 29.98 0.00 35.99 0.98
3274 3546 8.715191 TGCCAACCATTGTATATTTCAAAATC 57.285 30.769 0.00 0.00 0.00 2.17
3276 3548 8.778358 GTTTGCCAACCATTGTATATTTCAAAA 58.222 29.630 0.00 0.00 0.00 2.44
3293 3565 2.279851 GGTTGCCGGTTTGCCAAC 60.280 61.111 12.02 12.02 34.09 3.77
3294 3566 3.541713 GGGTTGCCGGTTTGCCAA 61.542 61.111 1.90 0.00 34.09 4.52
3297 3569 3.680786 GAGGGGTTGCCGGTTTGC 61.681 66.667 1.90 0.00 0.00 3.68
3298 3570 1.971695 GAGAGGGGTTGCCGGTTTG 60.972 63.158 1.90 0.00 0.00 2.93
3299 3571 2.125766 GAGAGAGGGGTTGCCGGTTT 62.126 60.000 1.90 0.00 0.00 3.27
3302 3574 2.685380 AGAGAGAGGGGTTGCCGG 60.685 66.667 0.00 0.00 0.00 6.13
3304 3576 0.179936 CATCAGAGAGAGGGGTTGCC 59.820 60.000 0.00 0.00 0.00 4.52
3320 3595 8.483307 AAAACAAGCCATACATGAAAATCATC 57.517 30.769 0.00 0.00 34.28 2.92
3412 3693 1.544691 AGTAGACCACAACAGCTACCG 59.455 52.381 0.00 0.00 35.08 4.02
3422 3703 1.204704 CGCTCCATTGAGTAGACCACA 59.795 52.381 0.00 0.00 40.95 4.17
3451 3732 4.920112 CACCGCCGAACCACCACA 62.920 66.667 0.00 0.00 0.00 4.17
3469 3758 0.179234 TTGGTTGAACTGACGCTCCA 59.821 50.000 0.00 0.00 0.00 3.86
3470 3759 1.002792 GTTTGGTTGAACTGACGCTCC 60.003 52.381 0.00 0.00 0.00 4.70
3525 3814 4.233005 GCTTTCCTCAGCAAATTTGAGAC 58.767 43.478 22.31 4.31 43.75 3.36
3558 3847 6.327626 TGGGAATGAAAAATTGGAACCACTTA 59.672 34.615 0.00 0.00 0.00 2.24
3580 3869 5.691754 GCTAAAAGATTGTCAGTTTGTTGGG 59.308 40.000 0.00 0.00 0.00 4.12
3603 3892 0.775861 GTTGTGAATTTTGTCCGCGC 59.224 50.000 0.00 0.00 0.00 6.86
3604 3893 1.041726 CGTTGTGAATTTTGTCCGCG 58.958 50.000 0.00 0.00 0.00 6.46
3621 4267 1.610038 TGGTTCGACACTGATACACGT 59.390 47.619 0.00 0.00 0.00 4.49
3624 4270 6.046593 GGATTTATGGTTCGACACTGATACA 58.953 40.000 0.00 0.00 0.00 2.29
3626 4272 5.286438 CGGATTTATGGTTCGACACTGATA 58.714 41.667 0.00 0.00 0.00 2.15
3649 4296 2.808906 ACTGCTGGTTTCCCTATTCC 57.191 50.000 0.00 0.00 0.00 3.01
3683 4330 1.610522 ACTACTTGCTTTGCTTGGCAG 59.389 47.619 0.00 0.00 40.61 4.85
3693 4340 5.765182 AGCAGTTTGTCAATACTACTTGCTT 59.235 36.000 0.00 0.00 30.86 3.91
3694 4341 5.308825 AGCAGTTTGTCAATACTACTTGCT 58.691 37.500 0.00 0.00 0.00 3.91
3696 4343 7.189693 TGAAGCAGTTTGTCAATACTACTTG 57.810 36.000 13.54 1.77 30.18 3.16
3697 4344 7.445402 ACATGAAGCAGTTTGTCAATACTACTT 59.555 33.333 0.00 10.59 32.15 2.24
3698 4345 6.936900 ACATGAAGCAGTTTGTCAATACTACT 59.063 34.615 0.00 0.00 0.00 2.57
3699 4346 7.017645 CACATGAAGCAGTTTGTCAATACTAC 58.982 38.462 0.00 0.00 0.00 2.73
3700 4347 6.934083 TCACATGAAGCAGTTTGTCAATACTA 59.066 34.615 0.00 0.00 0.00 1.82
3770 4417 6.995511 TCCCATTTTTCATAACTAACTCCG 57.004 37.500 0.00 0.00 0.00 4.63
3777 4424 5.721000 TGGAGCATTCCCATTTTTCATAACT 59.279 36.000 0.00 0.00 43.33 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.