Multiple sequence alignment - TraesCS7D01G504100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G504100 chr7D 100.000 2333 0 0 1 2333 610239564 610241896 0.000000e+00 4309.0
1 TraesCS7D01G504100 chr7D 88.308 1206 57 29 191 1338 607547464 607546285 0.000000e+00 1369.0
2 TraesCS7D01G504100 chr7D 87.500 408 51 0 1902 2309 458523172 458522765 2.710000e-129 472.0
3 TraesCS7D01G504100 chr7D 78.955 689 89 31 669 1336 608488400 608487747 3.590000e-113 418.0
4 TraesCS7D01G504100 chr7D 87.539 321 32 4 999 1318 514993777 514993464 4.740000e-97 364.0
5 TraesCS7D01G504100 chr7D 90.395 177 14 1 1 177 607550615 607550442 1.800000e-56 230.0
6 TraesCS7D01G504100 chr7D 91.250 160 8 2 441 598 608451011 608450856 1.820000e-51 213.0
7 TraesCS7D01G504100 chr7D 87.302 126 6 3 1781 1896 514992759 514992634 4.040000e-28 135.0
8 TraesCS7D01G504100 chr7D 82.468 154 22 4 234 383 514994943 514994791 1.880000e-26 130.0
9 TraesCS7D01G504100 chr7D 86.325 117 13 2 61 177 511667647 511667534 8.750000e-25 124.0
10 TraesCS7D01G504100 chr7D 85.714 105 10 3 1372 1476 607546288 607546189 3.170000e-19 106.0
11 TraesCS7D01G504100 chr7D 92.754 69 5 0 1 69 623613295 623613227 1.480000e-17 100.0
12 TraesCS7D01G504100 chr7D 97.917 48 1 0 626 673 608443614 608443567 1.490000e-12 84.2
13 TraesCS7D01G504100 chr7D 92.453 53 0 4 1830 1882 608442850 608442802 3.220000e-09 73.1
14 TraesCS7D01G504100 chr7D 83.784 74 4 3 1611 1684 608449912 608449847 1.940000e-06 63.9
15 TraesCS7D01G504100 chr7D 97.222 36 1 0 190 225 608451864 608451829 6.960000e-06 62.1
16 TraesCS7D01G504100 chr7D 97.222 36 1 0 190 225 608485231 608485196 6.960000e-06 62.1
17 TraesCS7D01G504100 chr7D 100.000 28 0 0 621 648 514994096 514994069 4.000000e-03 52.8
18 TraesCS7D01G504100 chr4A 84.416 1078 84 30 669 1700 661973374 661974413 0.000000e+00 983.0
19 TraesCS7D01G504100 chr4A 84.527 433 44 17 899 1330 661976336 661976746 7.760000e-110 407.0
20 TraesCS7D01G504100 chr4A 80.100 603 73 30 765 1334 661969283 661969871 2.790000e-109 405.0
21 TraesCS7D01G504100 chr4A 89.600 125 8 4 463 587 661973060 661973179 1.120000e-33 154.0
22 TraesCS7D01G504100 chr4A 83.942 137 15 4 1765 1896 735188591 735188725 8.750000e-25 124.0
23 TraesCS7D01G504100 chr4A 81.343 134 19 5 226 355 661972867 661972998 1.140000e-18 104.0
24 TraesCS7D01G504100 chr4A 97.297 37 1 0 1791 1827 661974543 661974579 1.940000e-06 63.9
25 TraesCS7D01G504100 chr7B 83.984 1024 77 37 669 1646 698857914 698856932 0.000000e+00 902.0
26 TraesCS7D01G504100 chr7B 80.359 1115 96 66 286 1338 693198790 693197737 0.000000e+00 732.0
27 TraesCS7D01G504100 chr7B 86.694 481 38 12 871 1338 693792696 693792229 5.750000e-141 510.0
28 TraesCS7D01G504100 chr7B 76.280 801 121 45 802 1572 696595330 696594569 1.700000e-96 363.0
29 TraesCS7D01G504100 chr7B 79.379 451 34 19 478 882 696590306 696589869 1.780000e-66 263.0
30 TraesCS7D01G504100 chr7B 82.544 338 20 14 487 792 698853813 698853483 6.390000e-66 261.0
31 TraesCS7D01G504100 chr7B 87.442 215 13 5 384 587 698858286 698858075 3.880000e-58 235.0
32 TraesCS7D01G504100 chr7B 85.022 227 23 6 384 607 693793544 693793326 1.090000e-53 220.0
33 TraesCS7D01G504100 chr7B 90.411 146 12 2 454 598 696363605 696363461 8.510000e-45 191.0
34 TraesCS7D01G504100 chr7B 89.189 148 9 4 452 598 696286719 696286578 6.620000e-41 178.0
35 TraesCS7D01G504100 chr7B 91.129 124 2 6 441 556 694767292 694767170 2.400000e-35 159.0
36 TraesCS7D01G504100 chr7B 82.990 194 14 10 699 875 693793158 693792967 8.630000e-35 158.0
37 TraesCS7D01G504100 chr7B 80.841 214 20 14 1372 1581 693197740 693197544 5.190000e-32 148.0
38 TraesCS7D01G504100 chr7B 88.430 121 8 4 60 177 719053768 719053885 8.690000e-30 141.0
39 TraesCS7D01G504100 chr7B 91.262 103 3 4 1737 1833 693791683 693791581 4.040000e-28 135.0
40 TraesCS7D01G504100 chr7B 85.185 135 15 4 1765 1896 696277369 696277237 1.450000e-27 134.0
41 TraesCS7D01G504100 chr7B 98.507 67 1 0 1767 1833 696579458 696579392 4.070000e-23 119.0
42 TraesCS7D01G504100 chr7B 93.056 72 5 0 388 459 696363699 696363628 3.170000e-19 106.0
43 TraesCS7D01G504100 chr7B 93.443 61 4 0 1372 1432 694766430 694766370 8.880000e-15 91.6
44 TraesCS7D01G504100 chr7B 100.000 32 0 0 1609 1640 694764965 694764934 2.500000e-05 60.2
45 TraesCS7D01G504100 chr7B 76.978 139 8 16 670 792 696595497 696595367 9.000000e-05 58.4
46 TraesCS7D01G504100 chr7A 80.610 1016 98 44 703 1684 700451619 700450669 0.000000e+00 693.0
47 TraesCS7D01G504100 chr7A 78.689 732 91 43 669 1345 699766804 699766083 5.960000e-116 427.0
48 TraesCS7D01G504100 chr7A 88.235 306 17 7 1306 1598 699740695 699740396 4.770000e-92 348.0
49 TraesCS7D01G504100 chr7A 81.501 373 30 18 669 1023 699741053 699740702 1.060000e-68 270.0
50 TraesCS7D01G504100 chr7A 89.671 213 12 6 384 587 700452063 700451852 1.780000e-66 263.0
51 TraesCS7D01G504100 chr7A 84.028 288 20 19 286 556 699741554 699741276 1.070000e-63 254.0
52 TraesCS7D01G504100 chrUn 82.407 864 49 32 530 1338 77545541 77544726 0.000000e+00 658.0
53 TraesCS7D01G504100 chrUn 82.663 398 52 7 952 1342 77586852 77586465 1.030000e-88 337.0
54 TraesCS7D01G504100 chr4D 89.681 407 39 3 1900 2304 465441325 465441730 1.240000e-142 516.0
55 TraesCS7D01G504100 chr4D 92.754 69 5 0 1 69 70997887 70997955 1.480000e-17 100.0
56 TraesCS7D01G504100 chr4D 92.754 69 5 0 1 69 337414799 337414731 1.480000e-17 100.0
57 TraesCS7D01G504100 chr6D 89.500 400 38 3 1904 2302 286638716 286639112 9.620000e-139 503.0
58 TraesCS7D01G504100 chr6D 91.429 70 4 2 1 69 446448286 446448218 6.860000e-16 95.3
59 TraesCS7D01G504100 chr6D 100.000 29 0 0 2305 2333 341118372 341118400 1.000000e-03 54.7
60 TraesCS7D01G504100 chr6D 100.000 29 0 0 2305 2333 428600961 428600989 1.000000e-03 54.7
61 TraesCS7D01G504100 chr3D 87.711 415 48 3 1893 2304 359349060 359348646 4.510000e-132 481.0
62 TraesCS7D01G504100 chr3D 86.777 121 10 5 60 177 25385587 25385704 1.880000e-26 130.0
63 TraesCS7D01G504100 chr3D 86.777 121 10 4 60 177 597140887 597141004 1.880000e-26 130.0
64 TraesCS7D01G504100 chr2D 88.337 403 44 3 1904 2304 42736003 42736404 4.510000e-132 481.0
65 TraesCS7D01G504100 chr2D 87.561 410 47 3 1893 2300 24526450 24526857 2.710000e-129 472.0
66 TraesCS7D01G504100 chr5D 87.651 413 47 3 1894 2304 328726252 328726662 5.830000e-131 477.0
67 TraesCS7D01G504100 chr5D 88.550 393 43 2 1913 2304 28319592 28319983 2.100000e-130 475.0
68 TraesCS7D01G504100 chr5D 88.889 270 27 3 1897 2165 62515788 62515521 1.730000e-86 329.0
69 TraesCS7D01G504100 chr5D 84.651 215 31 2 1902 2114 398253768 398253554 1.820000e-51 213.0
70 TraesCS7D01G504100 chr5D 89.189 111 8 3 68 177 383741918 383741811 4.040000e-28 135.0
71 TraesCS7D01G504100 chr5D 92.754 69 3 2 1 68 472431367 472431434 5.310000e-17 99.0
72 TraesCS7D01G504100 chr5D 91.429 70 6 0 1 70 528136766 528136835 1.910000e-16 97.1
73 TraesCS7D01G504100 chr5D 100.000 29 0 0 2305 2333 58018594 58018622 1.000000e-03 54.7
74 TraesCS7D01G504100 chr5D 100.000 29 0 0 2305 2333 408653978 408653950 1.000000e-03 54.7
75 TraesCS7D01G504100 chr5D 100.000 29 0 0 2305 2333 411744838 411744810 1.000000e-03 54.7
76 TraesCS7D01G504100 chr5D 100.000 29 0 0 2305 2333 487410860 487410888 1.000000e-03 54.7
77 TraesCS7D01G504100 chr3B 86.150 426 51 7 1881 2302 800949929 800950350 9.830000e-124 453.0
78 TraesCS7D01G504100 chr3B 87.395 119 12 2 61 179 671335579 671335464 1.450000e-27 134.0
79 TraesCS7D01G504100 chr6A 88.034 117 11 2 61 177 562473724 562473837 4.040000e-28 135.0
80 TraesCS7D01G504100 chr5B 87.931 116 11 2 62 177 460219102 460218990 1.450000e-27 134.0
81 TraesCS7D01G504100 chr4B 92.754 69 5 0 1 69 177196880 177196812 1.480000e-17 100.0
82 TraesCS7D01G504100 chr4B 100.000 29 0 0 2305 2333 672202248 672202220 1.000000e-03 54.7
83 TraesCS7D01G504100 chr3A 91.549 71 5 1 1 71 716226862 716226931 1.910000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G504100 chr7D 610239564 610241896 2332 False 4309.000000 4309 100.000000 1 2333 1 chr7D.!!$F1 2332
1 TraesCS7D01G504100 chr7D 607546189 607550615 4426 True 568.333333 1369 88.139000 1 1476 3 chr7D.!!$R5 1475
2 TraesCS7D01G504100 chr7D 608485196 608488400 3204 True 240.050000 418 88.088500 190 1336 2 chr7D.!!$R8 1146
3 TraesCS7D01G504100 chr4A 661969283 661976746 7463 False 352.816667 983 86.213833 226 1827 6 chr4A.!!$F2 1601
4 TraesCS7D01G504100 chr7B 698853483 698858286 4803 True 466.000000 902 84.656667 384 1646 3 chr7B.!!$R10 1262
5 TraesCS7D01G504100 chr7B 693197544 693198790 1246 True 440.000000 732 80.600000 286 1581 2 chr7B.!!$R5 1295
6 TraesCS7D01G504100 chr7B 693791581 693793544 1963 True 255.750000 510 86.492000 384 1833 4 chr7B.!!$R6 1449
7 TraesCS7D01G504100 chr7B 696594569 696595497 928 True 210.700000 363 76.629000 670 1572 2 chr7B.!!$R9 902
8 TraesCS7D01G504100 chr7A 700450669 700452063 1394 True 478.000000 693 85.140500 384 1684 2 chr7A.!!$R3 1300
9 TraesCS7D01G504100 chr7A 699766083 699766804 721 True 427.000000 427 78.689000 669 1345 1 chr7A.!!$R1 676
10 TraesCS7D01G504100 chr7A 699740396 699741554 1158 True 290.666667 348 84.588000 286 1598 3 chr7A.!!$R2 1312
11 TraesCS7D01G504100 chrUn 77544726 77545541 815 True 658.000000 658 82.407000 530 1338 1 chrUn.!!$R1 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 4931 0.534412 CTCAGAACTCGACAGCCCAT 59.466 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 7746 0.106369 TCGTCATCCCACGGATACCT 60.106 55.0 0.0 0.0 40.98 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.330655 GCAGTGGATTCGGAGGAGGA 61.331 60.000 0.00 0.00 0.00 3.71
76 77 1.712056 TTCGGAGGAGGAAGTGTTCA 58.288 50.000 0.00 0.00 0.00 3.18
97 98 3.386078 CACCTACATGCATGAGGTCTAGT 59.614 47.826 31.35 18.34 36.70 2.57
106 107 3.181438 GCATGAGGTCTAGTAGGAGGAGA 60.181 52.174 0.00 0.00 0.00 3.71
107 108 4.690261 GCATGAGGTCTAGTAGGAGGAGAA 60.690 50.000 0.00 0.00 0.00 2.87
108 109 4.781775 TGAGGTCTAGTAGGAGGAGAAG 57.218 50.000 0.00 0.00 0.00 2.85
109 110 3.460340 TGAGGTCTAGTAGGAGGAGAAGG 59.540 52.174 0.00 0.00 0.00 3.46
122 123 3.855853 GAAGGAGGAGCCGGAGCC 61.856 72.222 5.05 4.99 43.43 4.70
173 174 1.226323 CCGTCGTCGTGGACATCTC 60.226 63.158 0.71 0.00 36.73 2.75
187 3131 2.283298 ACATCTCCGATGTGCATTGTC 58.717 47.619 8.56 0.00 0.00 3.18
272 3634 3.812053 CGGAGGCAGGATATTTCTTCTTG 59.188 47.826 0.00 0.00 0.00 3.02
821 4488 4.742201 TGCGCGTCTCTTGCCCTC 62.742 66.667 8.43 0.00 0.00 4.30
857 4531 3.270877 CCCTGTCCTTATCCGTCTTTTG 58.729 50.000 0.00 0.00 0.00 2.44
931 4892 1.471501 GCACACTGTCACACACTCTCA 60.472 52.381 0.00 0.00 0.00 3.27
932 4893 2.467838 CACACTGTCACACACTCTCAG 58.532 52.381 0.00 0.00 0.00 3.35
934 4895 2.760650 ACACTGTCACACACTCTCAGAA 59.239 45.455 0.00 0.00 0.00 3.02
935 4896 3.119291 CACTGTCACACACTCTCAGAAC 58.881 50.000 0.00 0.00 0.00 3.01
942 4926 2.292016 ACACACTCTCAGAACTCGACAG 59.708 50.000 0.00 0.00 0.00 3.51
947 4931 0.534412 CTCAGAACTCGACAGCCCAT 59.466 55.000 0.00 0.00 0.00 4.00
968 4954 5.362430 CCATATCCATCTCTAGCTTCTACCC 59.638 48.000 0.00 0.00 0.00 3.69
1014 5019 3.127533 GCCATGGACGCTGTGGAC 61.128 66.667 18.40 0.00 34.94 4.02
1278 5322 1.271656 CGGTACCGGAACTTCAACTCT 59.728 52.381 27.00 0.00 35.56 3.24
1334 5378 2.753966 CCGTTGCCATCGCCTGAAG 61.754 63.158 0.00 0.00 0.00 3.02
1335 5379 2.034879 CGTTGCCATCGCCTGAAGT 61.035 57.895 0.00 0.00 0.00 3.01
1336 5380 1.796796 GTTGCCATCGCCTGAAGTC 59.203 57.895 0.00 0.00 0.00 3.01
1338 5382 2.892425 GCCATCGCCTGAAGTCCG 60.892 66.667 0.00 0.00 0.00 4.79
1339 5383 2.202932 CCATCGCCTGAAGTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
1340 5384 2.721167 CCATCGCCTGAAGTCCGGA 61.721 63.158 0.00 0.00 0.00 5.14
1343 5387 2.240162 ATCGCCTGAAGTCCGGAACC 62.240 60.000 5.23 0.00 0.00 3.62
1347 5391 0.249398 CCTGAAGTCCGGAACCGAAT 59.751 55.000 5.23 0.00 42.83 3.34
1348 5392 1.641577 CTGAAGTCCGGAACCGAATC 58.358 55.000 5.23 7.51 42.83 2.52
1349 5393 0.108992 TGAAGTCCGGAACCGAATCG 60.109 55.000 5.23 0.00 42.83 3.34
1350 5394 0.108945 GAAGTCCGGAACCGAATCGT 60.109 55.000 5.23 0.00 42.83 3.73
1351 5395 0.389426 AAGTCCGGAACCGAATCGTG 60.389 55.000 5.23 0.00 42.83 4.35
1352 5396 1.808390 GTCCGGAACCGAATCGTGG 60.808 63.158 5.23 0.00 42.83 4.94
1353 5397 2.263540 CCGGAACCGAATCGTGGT 59.736 61.111 15.07 0.00 42.98 4.16
1354 5398 0.964860 TCCGGAACCGAATCGTGGTA 60.965 55.000 15.07 0.00 39.29 3.25
1355 5399 0.526954 CCGGAACCGAATCGTGGTAG 60.527 60.000 15.07 0.00 39.29 3.18
1356 5400 0.171903 CGGAACCGAATCGTGGTAGT 59.828 55.000 7.53 0.00 39.29 2.73
1357 5401 1.636988 GGAACCGAATCGTGGTAGTG 58.363 55.000 0.82 0.00 39.29 2.74
1358 5402 1.636988 GAACCGAATCGTGGTAGTGG 58.363 55.000 0.82 0.00 39.29 4.00
1359 5403 0.971386 AACCGAATCGTGGTAGTGGT 59.029 50.000 0.82 0.00 39.29 4.16
1360 5404 1.838112 ACCGAATCGTGGTAGTGGTA 58.162 50.000 0.82 0.00 38.15 3.25
1361 5405 1.747355 ACCGAATCGTGGTAGTGGTAG 59.253 52.381 0.82 0.00 38.15 3.18
1362 5406 1.535437 CCGAATCGTGGTAGTGGTAGC 60.535 57.143 0.82 0.00 0.00 3.58
1363 5407 1.404391 CGAATCGTGGTAGTGGTAGCT 59.596 52.381 0.00 0.00 0.00 3.32
1364 5408 2.615447 CGAATCGTGGTAGTGGTAGCTA 59.385 50.000 0.00 0.00 0.00 3.32
1365 5409 3.303857 CGAATCGTGGTAGTGGTAGCTAG 60.304 52.174 0.00 0.00 0.00 3.42
1366 5410 1.386533 TCGTGGTAGTGGTAGCTAGC 58.613 55.000 16.08 16.08 39.23 3.42
1367 5411 0.029035 CGTGGTAGTGGTAGCTAGCG 59.971 60.000 17.59 0.00 41.01 4.26
1368 5412 0.384669 GTGGTAGTGGTAGCTAGCGG 59.615 60.000 17.59 0.00 41.01 5.52
1369 5413 1.363080 GGTAGTGGTAGCTAGCGGC 59.637 63.158 17.59 12.76 42.19 6.53
1370 5414 1.363080 GTAGTGGTAGCTAGCGGCC 59.637 63.158 17.59 19.44 43.05 6.13
1501 5849 2.358267 GCGGTCAGTAGTAGCAGTGTAT 59.642 50.000 0.00 0.00 0.00 2.29
1607 6043 2.094700 GGTTTGATCCGGAAAAGGCTTC 60.095 50.000 9.01 0.00 0.00 3.86
1652 6098 7.295340 ACTGTGAAGGAAGTTTACCCTTTAAT 58.705 34.615 0.00 0.00 42.43 1.40
1683 6129 3.577334 TTGGTGGCGGGTGGGAATC 62.577 63.158 0.00 0.00 0.00 2.52
1700 6163 1.043816 ATCGGAATCATCTGCCGTCT 58.956 50.000 0.00 0.00 45.02 4.18
1701 6164 1.687563 TCGGAATCATCTGCCGTCTA 58.312 50.000 0.00 0.00 45.02 2.59
1702 6165 2.239400 TCGGAATCATCTGCCGTCTAT 58.761 47.619 0.00 0.00 45.02 1.98
1703 6166 2.229062 TCGGAATCATCTGCCGTCTATC 59.771 50.000 0.00 0.00 45.02 2.08
1704 6167 2.672478 CGGAATCATCTGCCGTCTATCC 60.672 54.545 0.00 0.00 40.17 2.59
1705 6168 2.600731 GAATCATCTGCCGTCTATCCG 58.399 52.381 0.00 0.00 0.00 4.18
1706 6169 0.244994 ATCATCTGCCGTCTATCCGC 59.755 55.000 0.00 0.00 0.00 5.54
1707 6170 1.106944 TCATCTGCCGTCTATCCGCA 61.107 55.000 0.00 0.00 0.00 5.69
1708 6171 0.249447 CATCTGCCGTCTATCCGCAA 60.249 55.000 0.00 0.00 30.84 4.85
1709 6172 0.464036 ATCTGCCGTCTATCCGCAAA 59.536 50.000 0.00 0.00 30.84 3.68
1710 6173 0.248012 TCTGCCGTCTATCCGCAAAA 59.752 50.000 0.00 0.00 30.84 2.44
1711 6174 1.083489 CTGCCGTCTATCCGCAAAAA 58.917 50.000 0.00 0.00 30.84 1.94
1746 6209 3.350219 AAAACCAGAGTCATATGCCGT 57.650 42.857 0.00 0.00 0.00 5.68
1747 6210 2.604046 AACCAGAGTCATATGCCGTC 57.396 50.000 0.00 0.00 0.00 4.79
1748 6211 0.385751 ACCAGAGTCATATGCCGTCG 59.614 55.000 0.00 0.00 0.00 5.12
1749 6212 0.941463 CCAGAGTCATATGCCGTCGC 60.941 60.000 0.00 0.00 0.00 5.19
1750 6213 0.941463 CAGAGTCATATGCCGTCGCC 60.941 60.000 0.00 0.00 0.00 5.54
1751 6214 1.067416 GAGTCATATGCCGTCGCCA 59.933 57.895 0.00 0.00 0.00 5.69
1752 6215 0.319900 GAGTCATATGCCGTCGCCAT 60.320 55.000 0.00 0.00 0.00 4.40
1753 6216 0.319900 AGTCATATGCCGTCGCCATC 60.320 55.000 0.00 0.00 0.00 3.51
1754 6217 1.005037 TCATATGCCGTCGCCATCC 60.005 57.895 0.00 0.00 0.00 3.51
1755 6218 1.004560 CATATGCCGTCGCCATCCT 60.005 57.895 0.00 0.00 0.00 3.24
1756 6219 0.246360 CATATGCCGTCGCCATCCTA 59.754 55.000 0.00 0.00 0.00 2.94
1757 6220 1.134699 CATATGCCGTCGCCATCCTAT 60.135 52.381 0.00 0.00 0.00 2.57
1833 6408 2.742053 GCAAAGGATTAGCGAACAGTCA 59.258 45.455 0.00 0.00 0.00 3.41
1834 6409 3.188460 GCAAAGGATTAGCGAACAGTCAA 59.812 43.478 0.00 0.00 0.00 3.18
1835 6410 4.320202 GCAAAGGATTAGCGAACAGTCAAA 60.320 41.667 0.00 0.00 0.00 2.69
1836 6411 5.757886 CAAAGGATTAGCGAACAGTCAAAA 58.242 37.500 0.00 0.00 0.00 2.44
1837 6412 6.205784 CAAAGGATTAGCGAACAGTCAAAAA 58.794 36.000 0.00 0.00 0.00 1.94
1838 6413 6.575162 AAGGATTAGCGAACAGTCAAAAAT 57.425 33.333 0.00 0.00 0.00 1.82
1839 6414 7.681939 AAGGATTAGCGAACAGTCAAAAATA 57.318 32.000 0.00 0.00 0.00 1.40
1840 6415 7.865706 AGGATTAGCGAACAGTCAAAAATAT 57.134 32.000 0.00 0.00 0.00 1.28
1841 6416 7.920738 AGGATTAGCGAACAGTCAAAAATATC 58.079 34.615 0.00 0.00 0.00 1.63
1842 6417 7.770897 AGGATTAGCGAACAGTCAAAAATATCT 59.229 33.333 0.00 0.00 0.00 1.98
1843 6418 8.064814 GGATTAGCGAACAGTCAAAAATATCTC 58.935 37.037 0.00 0.00 0.00 2.75
1844 6419 8.723942 ATTAGCGAACAGTCAAAAATATCTCT 57.276 30.769 0.00 0.00 0.00 3.10
1845 6420 6.654793 AGCGAACAGTCAAAAATATCTCTC 57.345 37.500 0.00 0.00 0.00 3.20
1846 6421 6.402222 AGCGAACAGTCAAAAATATCTCTCT 58.598 36.000 0.00 0.00 0.00 3.10
1847 6422 6.876257 AGCGAACAGTCAAAAATATCTCTCTT 59.124 34.615 0.00 0.00 0.00 2.85
1848 6423 7.389053 AGCGAACAGTCAAAAATATCTCTCTTT 59.611 33.333 0.00 0.00 0.00 2.52
1849 6424 8.656849 GCGAACAGTCAAAAATATCTCTCTTTA 58.343 33.333 0.00 0.00 0.00 1.85
1892 6467 7.881775 AAAAATATCGAGCCAGGTCTTTTAT 57.118 32.000 0.00 0.00 0.00 1.40
1893 6468 7.881775 AAAATATCGAGCCAGGTCTTTTATT 57.118 32.000 0.00 0.00 0.00 1.40
1894 6469 7.881775 AAATATCGAGCCAGGTCTTTTATTT 57.118 32.000 0.00 0.70 0.00 1.40
1895 6470 7.881775 AATATCGAGCCAGGTCTTTTATTTT 57.118 32.000 0.00 0.00 0.00 1.82
1897 6472 3.756434 TCGAGCCAGGTCTTTTATTTTGG 59.244 43.478 0.00 0.00 0.00 3.28
1899 6474 3.832490 GAGCCAGGTCTTTTATTTTGGGT 59.168 43.478 0.00 0.00 38.96 4.51
1900 6475 3.832490 AGCCAGGTCTTTTATTTTGGGTC 59.168 43.478 0.00 0.00 31.31 4.46
1901 6476 3.056107 GCCAGGTCTTTTATTTTGGGTCC 60.056 47.826 0.00 0.00 0.00 4.46
1902 6477 4.416516 CCAGGTCTTTTATTTTGGGTCCT 58.583 43.478 0.00 0.00 0.00 3.85
1905 6480 5.716703 CAGGTCTTTTATTTTGGGTCCTGAT 59.283 40.000 0.00 0.00 41.37 2.90
1908 6483 7.396339 AGGTCTTTTATTTTGGGTCCTGATAAC 59.604 37.037 0.00 0.00 0.00 1.89
1912 6487 2.396590 TTTGGGTCCTGATAACGCTC 57.603 50.000 0.00 0.00 0.00 5.03
1914 6489 0.535335 TGGGTCCTGATAACGCTCAC 59.465 55.000 0.00 0.00 0.00 3.51
1915 6490 0.535335 GGGTCCTGATAACGCTCACA 59.465 55.000 0.00 0.00 0.00 3.58
1916 6491 1.641577 GGTCCTGATAACGCTCACAC 58.358 55.000 0.00 0.00 0.00 3.82
1936 6511 2.490903 ACGTGTGGTGTACTAGACATCC 59.509 50.000 0.00 2.62 38.54 3.51
1937 6512 2.477357 CGTGTGGTGTACTAGACATCCG 60.477 54.545 0.00 0.00 38.54 4.18
1940 6515 0.388294 GGTGTACTAGACATCCGCCC 59.612 60.000 0.00 0.00 41.14 6.13
1941 6516 1.400737 GTGTACTAGACATCCGCCCT 58.599 55.000 0.00 0.00 41.14 5.19
1942 6517 1.337387 GTGTACTAGACATCCGCCCTC 59.663 57.143 0.00 0.00 41.14 4.30
1943 6518 1.064240 TGTACTAGACATCCGCCCTCA 60.064 52.381 0.00 0.00 31.20 3.86
1944 6519 1.337387 GTACTAGACATCCGCCCTCAC 59.663 57.143 0.00 0.00 0.00 3.51
1945 6520 0.324368 ACTAGACATCCGCCCTCACA 60.324 55.000 0.00 0.00 0.00 3.58
1946 6521 1.043816 CTAGACATCCGCCCTCACAT 58.956 55.000 0.00 0.00 0.00 3.21
1947 6522 1.000283 CTAGACATCCGCCCTCACATC 60.000 57.143 0.00 0.00 0.00 3.06
1949 6524 0.107456 GACATCCGCCCTCACATCAT 59.893 55.000 0.00 0.00 0.00 2.45
1950 6525 0.179037 ACATCCGCCCTCACATCATG 60.179 55.000 0.00 0.00 0.00 3.07
1961 6536 2.845019 ACATCATGTGTGGCGTGAG 58.155 52.632 0.00 0.00 45.30 3.51
1962 6537 1.300971 ACATCATGTGTGGCGTGAGC 61.301 55.000 0.00 0.00 45.30 4.26
1994 6569 4.124910 ACAGGCTGTGTGTTGTCG 57.875 55.556 21.37 0.00 38.28 4.35
1996 6571 0.107897 ACAGGCTGTGTGTTGTCGAA 60.108 50.000 21.37 0.00 38.28 3.71
1999 6574 0.944386 GGCTGTGTGTTGTCGAACAT 59.056 50.000 0.00 0.00 43.95 2.71
2000 6575 1.333619 GGCTGTGTGTTGTCGAACATT 59.666 47.619 0.00 0.00 43.95 2.71
2002 6577 3.363970 GGCTGTGTGTTGTCGAACATTAG 60.364 47.826 0.00 0.00 43.95 1.73
2005 6580 5.334105 GCTGTGTGTTGTCGAACATTAGAAT 60.334 40.000 0.00 0.00 43.95 2.40
2007 6582 6.426327 TGTGTGTTGTCGAACATTAGAATTG 58.574 36.000 0.00 0.00 43.95 2.32
2008 6583 5.339611 GTGTGTTGTCGAACATTAGAATTGC 59.660 40.000 0.00 0.00 43.95 3.56
2009 6584 4.851558 GTGTTGTCGAACATTAGAATTGCC 59.148 41.667 0.00 0.00 43.95 4.52
2011 6586 3.680490 TGTCGAACATTAGAATTGCCCA 58.320 40.909 0.00 0.00 0.00 5.36
2012 6587 3.438781 TGTCGAACATTAGAATTGCCCAC 59.561 43.478 0.00 0.00 0.00 4.61
2013 6588 3.438781 GTCGAACATTAGAATTGCCCACA 59.561 43.478 0.00 0.00 0.00 4.17
2016 6591 2.790433 ACATTAGAATTGCCCACACGT 58.210 42.857 0.00 0.00 0.00 4.49
2017 6592 2.487762 ACATTAGAATTGCCCACACGTG 59.512 45.455 15.48 15.48 0.00 4.49
2018 6593 2.264005 TTAGAATTGCCCACACGTGT 57.736 45.000 17.22 17.22 0.00 4.49
2019 6594 1.518325 TAGAATTGCCCACACGTGTG 58.482 50.000 36.13 36.13 45.23 3.82
2029 6604 2.663520 CACGTGTGGGCGCAACTA 60.664 61.111 10.83 0.00 34.88 2.24
2033 6608 1.866925 GTGTGGGCGCAACTACTTC 59.133 57.895 10.83 0.00 0.00 3.01
2034 6609 1.666553 TGTGGGCGCAACTACTTCG 60.667 57.895 10.83 0.00 0.00 3.79
2036 6611 1.666553 TGGGCGCAACTACTTCGTG 60.667 57.895 10.83 0.00 0.00 4.35
2037 6612 2.474712 GGCGCAACTACTTCGTGC 59.525 61.111 10.83 0.00 35.44 5.34
2039 6614 2.314647 GCGCAACTACTTCGTGCCA 61.315 57.895 0.30 0.00 0.00 4.92
2040 6615 1.491563 CGCAACTACTTCGTGCCAC 59.508 57.895 0.00 0.00 0.00 5.01
2041 6616 1.218875 CGCAACTACTTCGTGCCACA 61.219 55.000 0.00 0.00 0.00 4.17
2051 6626 3.522731 GTGCCACACGCCCAACAA 61.523 61.111 0.00 0.00 36.24 2.83
2052 6627 3.215568 TGCCACACGCCCAACAAG 61.216 61.111 0.00 0.00 36.24 3.16
2054 6629 1.894756 GCCACACGCCCAACAAGTA 60.895 57.895 0.00 0.00 0.00 2.24
2057 6632 1.270412 CCACACGCCCAACAAGTACTA 60.270 52.381 0.00 0.00 0.00 1.82
2058 6633 1.796459 CACACGCCCAACAAGTACTAC 59.204 52.381 0.00 0.00 0.00 2.73
2059 6634 1.690352 ACACGCCCAACAAGTACTACT 59.310 47.619 0.00 0.00 0.00 2.57
2060 6635 2.288640 ACACGCCCAACAAGTACTACTC 60.289 50.000 0.00 0.00 0.00 2.59
2062 6637 2.565834 ACGCCCAACAAGTACTACTCAT 59.434 45.455 0.00 0.00 0.00 2.90
2063 6638 3.187700 CGCCCAACAAGTACTACTCATC 58.812 50.000 0.00 0.00 0.00 2.92
2064 6639 3.532542 GCCCAACAAGTACTACTCATCC 58.467 50.000 0.00 0.00 0.00 3.51
2065 6640 3.681874 GCCCAACAAGTACTACTCATCCC 60.682 52.174 0.00 0.00 0.00 3.85
2066 6641 3.118371 CCCAACAAGTACTACTCATCCCC 60.118 52.174 0.00 0.00 0.00 4.81
2069 6644 3.105283 ACAAGTACTACTCATCCCCACC 58.895 50.000 0.00 0.00 0.00 4.61
2070 6645 2.434702 CAAGTACTACTCATCCCCACCC 59.565 54.545 0.00 0.00 0.00 4.61
2071 6646 1.938069 AGTACTACTCATCCCCACCCT 59.062 52.381 0.00 0.00 0.00 4.34
2072 6647 2.091222 AGTACTACTCATCCCCACCCTC 60.091 54.545 0.00 0.00 0.00 4.30
2100 7724 2.785679 GCACGAAGCAAATATGACCAC 58.214 47.619 0.00 0.00 44.79 4.16
2102 7726 3.747193 CACGAAGCAAATATGACCACAC 58.253 45.455 0.00 0.00 0.00 3.82
2111 7735 0.389296 TATGACCACACGTTCTGGCG 60.389 55.000 8.68 0.00 37.94 5.69
2113 7737 4.539083 ACCACACGTTCTGGCGCA 62.539 61.111 10.83 0.00 34.88 6.09
2114 7738 3.276091 CCACACGTTCTGGCGCAA 61.276 61.111 10.83 0.00 34.88 4.85
2119 7743 4.368808 CGTTCTGGCGCAACCACG 62.369 66.667 10.83 8.47 46.36 4.94
2120 7744 3.276846 GTTCTGGCGCAACCACGT 61.277 61.111 10.83 0.00 46.36 4.49
2121 7745 2.515057 TTCTGGCGCAACCACGTT 60.515 55.556 10.83 0.00 46.36 3.99
2122 7746 1.227586 TTCTGGCGCAACCACGTTA 60.228 52.632 10.83 0.00 46.36 3.18
2123 7747 1.225376 TTCTGGCGCAACCACGTTAG 61.225 55.000 10.83 0.00 46.36 2.34
2125 7749 2.667199 GGCGCAACCACGTTAGGT 60.667 61.111 10.83 0.00 45.91 3.08
2126 7750 1.374505 GGCGCAACCACGTTAGGTA 60.375 57.895 10.83 0.00 42.25 3.08
2127 7751 0.741927 GGCGCAACCACGTTAGGTAT 60.742 55.000 10.83 0.00 42.25 2.73
2129 7753 1.283736 CGCAACCACGTTAGGTATCC 58.716 55.000 0.00 0.00 42.25 2.59
2130 7754 1.283736 GCAACCACGTTAGGTATCCG 58.716 55.000 0.00 0.00 42.25 4.18
2131 7755 1.404583 GCAACCACGTTAGGTATCCGT 60.405 52.381 0.00 0.00 42.25 4.69
2136 7760 1.684983 CACGTTAGGTATCCGTGGGAT 59.315 52.381 2.29 2.29 45.97 3.85
2137 7761 1.684983 ACGTTAGGTATCCGTGGGATG 59.315 52.381 7.40 0.00 43.06 3.51
2138 7762 1.958579 CGTTAGGTATCCGTGGGATGA 59.041 52.381 7.40 0.00 43.06 2.92
2140 7764 1.612676 TAGGTATCCGTGGGATGACG 58.387 55.000 7.40 0.00 43.06 4.35
2142 7766 0.966920 GGTATCCGTGGGATGACGAT 59.033 55.000 7.40 0.00 43.06 3.73
2143 7767 1.343465 GGTATCCGTGGGATGACGATT 59.657 52.381 7.40 0.00 43.06 3.34
2144 7768 2.224209 GGTATCCGTGGGATGACGATTT 60.224 50.000 7.40 0.00 43.06 2.17
2145 7769 3.006110 GGTATCCGTGGGATGACGATTTA 59.994 47.826 7.40 0.00 43.06 1.40
2147 7771 2.104967 TCCGTGGGATGACGATTTAGT 58.895 47.619 0.00 0.00 42.10 2.24
2149 7773 2.607635 CCGTGGGATGACGATTTAGTTG 59.392 50.000 0.00 0.00 42.10 3.16
2150 7774 2.030457 CGTGGGATGACGATTTAGTTGC 59.970 50.000 0.00 0.00 42.10 4.17
2151 7775 2.354821 GTGGGATGACGATTTAGTTGCC 59.645 50.000 0.00 0.00 0.00 4.52
2152 7776 2.026729 TGGGATGACGATTTAGTTGCCA 60.027 45.455 0.00 0.00 0.00 4.92
2153 7777 3.214328 GGGATGACGATTTAGTTGCCAT 58.786 45.455 0.00 0.00 0.00 4.40
2154 7778 3.251004 GGGATGACGATTTAGTTGCCATC 59.749 47.826 0.00 0.00 0.00 3.51
2155 7779 3.251004 GGATGACGATTTAGTTGCCATCC 59.749 47.826 0.00 0.00 40.90 3.51
2157 7781 1.597663 GACGATTTAGTTGCCATCCGG 59.402 52.381 0.00 0.00 0.00 5.14
2158 7782 0.944386 CGATTTAGTTGCCATCCGGG 59.056 55.000 0.00 0.00 40.85 5.73
2159 7783 1.474320 CGATTTAGTTGCCATCCGGGA 60.474 52.381 0.00 0.00 40.01 5.14
2161 7785 2.051334 TTTAGTTGCCATCCGGGATG 57.949 50.000 26.79 26.79 40.01 3.51
2169 7793 2.811307 CATCCGGGATGGCAAATGT 58.189 52.632 26.20 0.00 36.51 2.71
2170 7794 1.979855 CATCCGGGATGGCAAATGTA 58.020 50.000 26.20 0.00 36.51 2.29
2171 7795 1.881973 CATCCGGGATGGCAAATGTAG 59.118 52.381 26.20 0.00 36.51 2.74
2172 7796 0.465460 TCCGGGATGGCAAATGTAGC 60.465 55.000 0.00 0.00 37.80 3.58
2173 7797 0.466189 CCGGGATGGCAAATGTAGCT 60.466 55.000 0.00 0.00 0.00 3.32
2174 7798 0.664761 CGGGATGGCAAATGTAGCTG 59.335 55.000 0.00 0.00 0.00 4.24
2175 7799 1.767759 GGGATGGCAAATGTAGCTGT 58.232 50.000 0.00 0.00 0.00 4.40
2176 7800 2.744823 CGGGATGGCAAATGTAGCTGTA 60.745 50.000 0.00 0.00 0.00 2.74
2177 7801 3.287222 GGGATGGCAAATGTAGCTGTAA 58.713 45.455 0.00 0.00 0.00 2.41
2178 7802 3.699038 GGGATGGCAAATGTAGCTGTAAA 59.301 43.478 0.00 0.00 0.00 2.01
2180 7804 5.343249 GGATGGCAAATGTAGCTGTAAAAG 58.657 41.667 0.00 0.00 0.00 2.27
2198 7822 7.839907 TGTAAAAGCATGGCAATTCTCTTTAT 58.160 30.769 0.00 0.00 0.00 1.40
2199 7823 8.313292 TGTAAAAGCATGGCAATTCTCTTTATT 58.687 29.630 0.00 0.00 0.00 1.40
2200 7824 9.154847 GTAAAAGCATGGCAATTCTCTTTATTT 57.845 29.630 0.00 0.00 0.00 1.40
2201 7825 8.625786 AAAAGCATGGCAATTCTCTTTATTTT 57.374 26.923 0.00 0.00 0.00 1.82
2206 7855 7.548780 GCATGGCAATTCTCTTTATTTTGGTTA 59.451 33.333 0.00 0.00 0.00 2.85
2207 7856 9.434420 CATGGCAATTCTCTTTATTTTGGTTAA 57.566 29.630 0.00 0.00 0.00 2.01
2240 9782 8.208718 TGTCATGTCTAATTTATGGTAGTTGC 57.791 34.615 0.00 0.00 0.00 4.17
2246 9788 4.695217 AATTTATGGTAGTTGCCGTGTG 57.305 40.909 0.00 0.00 0.00 3.82
2249 9791 2.843401 ATGGTAGTTGCCGTGTGTAA 57.157 45.000 0.00 0.00 0.00 2.41
2251 9793 2.690786 TGGTAGTTGCCGTGTGTAATC 58.309 47.619 0.00 0.00 0.00 1.75
2252 9794 2.037381 TGGTAGTTGCCGTGTGTAATCA 59.963 45.455 0.00 0.00 0.00 2.57
2253 9795 3.068560 GGTAGTTGCCGTGTGTAATCAA 58.931 45.455 0.00 0.00 0.00 2.57
2254 9796 3.499157 GGTAGTTGCCGTGTGTAATCAAA 59.501 43.478 0.00 0.00 0.00 2.69
2255 9797 3.619233 AGTTGCCGTGTGTAATCAAAC 57.381 42.857 0.00 0.00 0.00 2.93
2256 9798 3.211045 AGTTGCCGTGTGTAATCAAACT 58.789 40.909 0.00 0.00 30.10 2.66
2257 9799 4.382291 AGTTGCCGTGTGTAATCAAACTA 58.618 39.130 0.00 0.00 30.10 2.24
2258 9800 5.001232 AGTTGCCGTGTGTAATCAAACTAT 58.999 37.500 0.00 0.00 30.10 2.12
2260 9802 6.651643 AGTTGCCGTGTGTAATCAAACTATAA 59.348 34.615 0.00 0.00 30.10 0.98
2261 9803 7.335924 AGTTGCCGTGTGTAATCAAACTATAAT 59.664 33.333 0.00 0.00 30.10 1.28
2262 9804 7.618502 TGCCGTGTGTAATCAAACTATAATT 57.381 32.000 0.00 0.00 30.10 1.40
2263 9805 7.468441 TGCCGTGTGTAATCAAACTATAATTG 58.532 34.615 0.00 0.00 30.10 2.32
2264 9806 6.413818 GCCGTGTGTAATCAAACTATAATTGC 59.586 38.462 0.00 0.00 30.10 3.56
2265 9807 6.910433 CCGTGTGTAATCAAACTATAATTGCC 59.090 38.462 0.00 0.00 30.10 4.52
2266 9808 6.627276 CGTGTGTAATCAAACTATAATTGCCG 59.373 38.462 0.00 0.00 30.10 5.69
2267 9809 7.469260 GTGTGTAATCAAACTATAATTGCCGT 58.531 34.615 0.00 0.00 0.00 5.68
2268 9810 7.428183 GTGTGTAATCAAACTATAATTGCCGTG 59.572 37.037 0.00 0.00 0.00 4.94
2269 9811 7.119992 TGTGTAATCAAACTATAATTGCCGTGT 59.880 33.333 0.00 0.00 0.00 4.49
2270 9812 7.428183 GTGTAATCAAACTATAATTGCCGTGTG 59.572 37.037 0.00 0.00 0.00 3.82
2272 9814 5.289917 TCAAACTATAATTGCCGTGTGTG 57.710 39.130 0.00 0.00 0.00 3.82
2274 9816 5.645929 TCAAACTATAATTGCCGTGTGTGAT 59.354 36.000 0.00 0.00 0.00 3.06
2275 9817 6.150307 TCAAACTATAATTGCCGTGTGTGATT 59.850 34.615 0.00 0.00 0.00 2.57
2276 9818 7.334671 TCAAACTATAATTGCCGTGTGTGATTA 59.665 33.333 0.00 0.00 0.00 1.75
2278 9820 7.011828 ACTATAATTGCCGTGTGTGATTAAC 57.988 36.000 0.00 0.00 0.00 2.01
2280 9822 7.982919 ACTATAATTGCCGTGTGTGATTAACTA 59.017 33.333 0.00 0.00 0.00 2.24
2281 9823 4.939509 ATTGCCGTGTGTGATTAACTAC 57.060 40.909 0.00 0.00 0.00 2.73
2282 9824 3.671008 TGCCGTGTGTGATTAACTACT 57.329 42.857 0.00 0.00 0.00 2.57
2283 9825 3.997762 TGCCGTGTGTGATTAACTACTT 58.002 40.909 0.00 0.00 0.00 2.24
2284 9826 3.743911 TGCCGTGTGTGATTAACTACTTG 59.256 43.478 0.00 0.00 0.00 3.16
2286 9828 3.124636 CCGTGTGTGATTAACTACTTGCC 59.875 47.826 0.00 0.00 0.00 4.52
2287 9829 3.743911 CGTGTGTGATTAACTACTTGCCA 59.256 43.478 0.00 0.00 0.00 4.92
2288 9830 4.377022 CGTGTGTGATTAACTACTTGCCAC 60.377 45.833 0.00 0.00 0.00 5.01
2289 9831 4.513692 GTGTGTGATTAACTACTTGCCACA 59.486 41.667 0.00 0.00 0.00 4.17
2290 9832 5.181245 GTGTGTGATTAACTACTTGCCACAT 59.819 40.000 0.00 0.00 35.83 3.21
2291 9833 6.370442 GTGTGTGATTAACTACTTGCCACATA 59.630 38.462 0.00 0.00 35.83 2.29
2292 9834 7.065803 GTGTGTGATTAACTACTTGCCACATAT 59.934 37.037 0.00 0.00 35.83 1.78
2293 9835 7.065683 TGTGTGATTAACTACTTGCCACATATG 59.934 37.037 0.00 0.00 35.83 1.78
2294 9836 7.279981 GTGTGATTAACTACTTGCCACATATGA 59.720 37.037 10.38 0.00 35.83 2.15
2295 9837 7.992608 TGTGATTAACTACTTGCCACATATGAT 59.007 33.333 10.38 0.00 0.00 2.45
2296 9838 8.499162 GTGATTAACTACTTGCCACATATGATC 58.501 37.037 10.38 0.00 0.00 2.92
2297 9839 8.210265 TGATTAACTACTTGCCACATATGATCA 58.790 33.333 10.38 0.00 0.00 2.92
2298 9840 8.978874 ATTAACTACTTGCCACATATGATCAA 57.021 30.769 10.38 8.90 0.00 2.57
2299 9841 8.800370 TTAACTACTTGCCACATATGATCAAA 57.200 30.769 10.38 0.00 0.00 2.69
2300 9842 6.683974 ACTACTTGCCACATATGATCAAAC 57.316 37.500 10.38 0.00 0.00 2.93
2305 10643 6.814644 ACTTGCCACATATGATCAAACAATTG 59.185 34.615 10.38 3.24 37.92 2.32
2306 10644 5.662456 TGCCACATATGATCAAACAATTGG 58.338 37.500 10.38 3.55 37.15 3.16
2311 10649 9.820725 CCACATATGATCAAACAATTGGTTAAT 57.179 29.630 8.75 0.00 39.29 1.40
2316 10654 8.991243 ATGATCAAACAATTGGTTAATCACAG 57.009 30.769 21.76 2.94 41.09 3.66
2319 10657 8.592105 ATCAAACAATTGGTTAATCACAGTTG 57.408 30.769 8.75 0.23 39.29 3.16
2320 10658 7.551585 TCAAACAATTGGTTAATCACAGTTGT 58.448 30.769 8.75 10.61 45.48 3.32
2321 10659 7.704472 TCAAACAATTGGTTAATCACAGTTGTC 59.296 33.333 8.75 0.00 43.66 3.18
2324 10662 7.147312 ACAATTGGTTAATCACAGTTGTCATG 58.853 34.615 10.83 0.00 41.66 3.07
2328 10666 5.008514 TGGTTAATCACAGTTGTCATGTGTG 59.991 40.000 6.99 6.99 46.49 3.82
2332 10670 6.691754 AATCACAGTTGTCATGTGTGTTTA 57.308 33.333 11.76 0.00 46.49 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.537560 CCGAATCCACTGCATCGGC 61.538 63.158 10.93 0.00 46.97 5.54
68 69 4.005650 CTCATGCATGTAGGTGAACACTT 58.994 43.478 25.43 0.00 30.75 3.16
76 77 3.647636 ACTAGACCTCATGCATGTAGGT 58.352 45.455 32.92 32.92 39.41 3.08
97 98 0.558712 GGCTCCTCCTTCTCCTCCTA 59.441 60.000 0.00 0.00 0.00 2.94
122 123 3.834799 GGACGGGCGTGTAGGAGG 61.835 72.222 0.00 0.00 0.00 4.30
158 159 0.746923 ATCGGAGATGTCCACGACGA 60.747 55.000 9.94 0.09 44.18 4.20
167 168 2.283298 GACAATGCACATCGGAGATGT 58.717 47.619 9.61 9.61 45.12 3.06
173 174 1.715585 GACGGACAATGCACATCGG 59.284 57.895 0.00 0.00 0.00 4.18
283 3645 3.011760 GAGCGCTCGGTCAAAACGG 62.012 63.158 23.61 0.00 41.72 4.44
386 3788 3.053896 CGGCGGGGTCAAAGGTTC 61.054 66.667 0.00 0.00 0.00 3.62
695 4299 4.779733 ACGGGAGGAGGGCGATGT 62.780 66.667 0.00 0.00 0.00 3.06
832 4499 2.131709 CGGATAAGGACAGGGCCGA 61.132 63.158 0.00 0.00 41.11 5.54
839 4506 2.706890 GGCAAAAGACGGATAAGGACA 58.293 47.619 0.00 0.00 0.00 4.02
840 4507 1.664151 CGGCAAAAGACGGATAAGGAC 59.336 52.381 0.00 0.00 0.00 3.85
857 4531 0.035036 GACTAAATAGGAGGGGCGGC 59.965 60.000 0.00 0.00 0.00 6.53
931 4892 1.689273 GGATATGGGCTGTCGAGTTCT 59.311 52.381 0.00 0.00 0.00 3.01
932 4893 1.412710 TGGATATGGGCTGTCGAGTTC 59.587 52.381 0.00 0.00 0.00 3.01
934 4895 1.620819 GATGGATATGGGCTGTCGAGT 59.379 52.381 0.00 0.00 0.00 4.18
935 4896 1.898472 AGATGGATATGGGCTGTCGAG 59.102 52.381 0.00 0.00 0.00 4.04
942 4926 3.774216 AGAAGCTAGAGATGGATATGGGC 59.226 47.826 0.00 0.00 0.00 5.36
947 4931 4.590918 CGGGTAGAAGCTAGAGATGGATA 58.409 47.826 0.00 0.00 0.00 2.59
968 4954 1.630244 GGTGCTAGTGTGCTTCAGCG 61.630 60.000 0.00 0.00 45.83 5.18
1014 5019 1.139095 GTACGGCGAAGTGGAGGAG 59.861 63.158 16.62 0.00 0.00 3.69
1109 5123 3.984193 CTTTGCGGCCTCTCCCCTG 62.984 68.421 0.00 0.00 0.00 4.45
1110 5124 3.721706 CTTTGCGGCCTCTCCCCT 61.722 66.667 0.00 0.00 0.00 4.79
1167 5184 0.901580 GGTCGTACCTGAACTCCCCA 60.902 60.000 0.00 0.00 34.73 4.96
1320 5364 2.268920 GGACTTCAGGCGATGGCA 59.731 61.111 1.01 0.00 42.47 4.92
1334 5378 1.808390 CCACGATTCGGTTCCGGAC 60.808 63.158 1.83 0.00 0.00 4.79
1335 5379 0.964860 TACCACGATTCGGTTCCGGA 60.965 55.000 11.29 0.00 37.99 5.14
1336 5380 0.526954 CTACCACGATTCGGTTCCGG 60.527 60.000 11.29 0.00 37.99 5.14
1338 5382 1.636988 CACTACCACGATTCGGTTCC 58.363 55.000 11.29 0.00 37.99 3.62
1339 5383 1.067354 ACCACTACCACGATTCGGTTC 60.067 52.381 11.29 0.00 37.99 3.62
1340 5384 0.971386 ACCACTACCACGATTCGGTT 59.029 50.000 11.29 0.00 37.99 4.44
1343 5387 1.404391 AGCTACCACTACCACGATTCG 59.596 52.381 4.14 4.14 0.00 3.34
1347 5391 1.386533 GCTAGCTACCACTACCACGA 58.613 55.000 7.70 0.00 0.00 4.35
1348 5392 0.029035 CGCTAGCTACCACTACCACG 59.971 60.000 13.93 0.00 0.00 4.94
1349 5393 0.384669 CCGCTAGCTACCACTACCAC 59.615 60.000 13.93 0.00 0.00 4.16
1350 5394 1.389609 GCCGCTAGCTACCACTACCA 61.390 60.000 13.93 0.00 38.99 3.25
1351 5395 1.363080 GCCGCTAGCTACCACTACC 59.637 63.158 13.93 0.00 38.99 3.18
1352 5396 1.363080 GGCCGCTAGCTACCACTAC 59.637 63.158 13.93 0.00 43.05 2.73
1353 5397 2.191513 CGGCCGCTAGCTACCACTA 61.192 63.158 14.67 0.00 43.05 2.74
1354 5398 3.528370 CGGCCGCTAGCTACCACT 61.528 66.667 14.67 0.00 43.05 4.00
1355 5399 3.769875 GACGGCCGCTAGCTACCAC 62.770 68.421 28.58 10.86 43.05 4.16
1356 5400 3.524606 GACGGCCGCTAGCTACCA 61.525 66.667 28.58 0.00 43.05 3.25
1357 5401 4.281947 GGACGGCCGCTAGCTACC 62.282 72.222 28.58 12.71 43.05 3.18
1358 5402 2.294132 AAAGGACGGCCGCTAGCTAC 62.294 60.000 28.58 5.78 43.05 3.58
1359 5403 2.056223 AAAGGACGGCCGCTAGCTA 61.056 57.895 28.58 0.00 43.05 3.32
1360 5404 3.391382 AAAGGACGGCCGCTAGCT 61.391 61.111 28.58 4.48 43.05 3.32
1361 5405 3.195698 CAAAGGACGGCCGCTAGC 61.196 66.667 28.58 12.44 39.96 3.42
1362 5406 3.195698 GCAAAGGACGGCCGCTAG 61.196 66.667 28.58 12.44 39.96 3.42
1363 5407 3.702048 AGCAAAGGACGGCCGCTA 61.702 61.111 28.58 0.00 39.96 4.26
1367 5411 2.982744 GAAGCAGCAAAGGACGGCC 61.983 63.158 0.00 0.00 0.00 6.13
1368 5412 1.968540 AGAAGCAGCAAAGGACGGC 60.969 57.895 0.00 0.00 0.00 5.68
1369 5413 0.886490 ACAGAAGCAGCAAAGGACGG 60.886 55.000 0.00 0.00 0.00 4.79
1370 5414 1.728971 CTACAGAAGCAGCAAAGGACG 59.271 52.381 0.00 0.00 0.00 4.79
1457 5798 1.070843 CGATTTGCACGGCCGTATAAG 60.071 52.381 33.70 20.25 0.00 1.73
1607 6043 6.643770 CACAGTTCATCATCCAAAAGAAAAGG 59.356 38.462 0.00 0.00 0.00 3.11
1652 6098 2.016905 CCACCAACCCAAATACCCAA 57.983 50.000 0.00 0.00 0.00 4.12
1657 6103 1.304547 CCCGCCACCAACCCAAATA 60.305 57.895 0.00 0.00 0.00 1.40
1659 6105 4.144727 ACCCGCCACCAACCCAAA 62.145 61.111 0.00 0.00 0.00 3.28
1660 6106 4.904590 CACCCGCCACCAACCCAA 62.905 66.667 0.00 0.00 0.00 4.12
1679 6125 1.795286 GACGGCAGATGATTCCGATTC 59.205 52.381 6.91 0.00 45.53 2.52
1725 6188 3.686016 ACGGCATATGACTCTGGTTTTT 58.314 40.909 6.97 0.00 0.00 1.94
1726 6189 3.270877 GACGGCATATGACTCTGGTTTT 58.729 45.455 6.97 0.00 0.00 2.43
1727 6190 2.738643 CGACGGCATATGACTCTGGTTT 60.739 50.000 6.97 0.00 0.00 3.27
1728 6191 1.202417 CGACGGCATATGACTCTGGTT 60.202 52.381 6.97 0.00 0.00 3.67
1729 6192 0.385751 CGACGGCATATGACTCTGGT 59.614 55.000 6.97 0.00 0.00 4.00
1730 6193 0.941463 GCGACGGCATATGACTCTGG 60.941 60.000 6.97 0.00 39.62 3.86
1731 6194 0.941463 GGCGACGGCATATGACTCTG 60.941 60.000 17.49 0.00 42.47 3.35
1732 6195 1.364171 GGCGACGGCATATGACTCT 59.636 57.895 17.49 0.00 42.47 3.24
1733 6196 0.319900 ATGGCGACGGCATATGACTC 60.320 55.000 32.58 2.46 46.84 3.36
1734 6197 1.748403 ATGGCGACGGCATATGACT 59.252 52.632 32.58 11.13 46.84 3.41
1735 6198 4.361253 ATGGCGACGGCATATGAC 57.639 55.556 32.58 1.50 46.84 3.06
1741 6204 1.069090 GAATAGGATGGCGACGGCA 59.931 57.895 27.04 27.04 43.52 5.69
1742 6205 1.668151 GGAATAGGATGGCGACGGC 60.668 63.158 15.43 15.43 38.90 5.68
1743 6206 0.038159 GAGGAATAGGATGGCGACGG 60.038 60.000 0.00 0.00 0.00 4.79
1744 6207 0.038159 GGAGGAATAGGATGGCGACG 60.038 60.000 0.00 0.00 0.00 5.12
1745 6208 0.038159 CGGAGGAATAGGATGGCGAC 60.038 60.000 0.00 0.00 0.00 5.19
1746 6209 0.469331 ACGGAGGAATAGGATGGCGA 60.469 55.000 0.00 0.00 0.00 5.54
1747 6210 0.319900 CACGGAGGAATAGGATGGCG 60.320 60.000 0.00 0.00 0.00 5.69
1748 6211 0.759346 ACACGGAGGAATAGGATGGC 59.241 55.000 0.00 0.00 0.00 4.40
1749 6212 1.070758 CCACACGGAGGAATAGGATGG 59.929 57.143 0.00 0.00 0.00 3.51
1750 6213 1.070758 CCCACACGGAGGAATAGGATG 59.929 57.143 0.00 0.00 0.00 3.51
1751 6214 1.424638 CCCACACGGAGGAATAGGAT 58.575 55.000 0.00 0.00 0.00 3.24
1752 6215 1.335132 GCCCACACGGAGGAATAGGA 61.335 60.000 0.00 0.00 0.00 2.94
1753 6216 1.146263 GCCCACACGGAGGAATAGG 59.854 63.158 0.00 0.00 0.00 2.57
1754 6217 0.179073 CAGCCCACACGGAGGAATAG 60.179 60.000 0.00 0.00 0.00 1.73
1755 6218 1.904771 CAGCCCACACGGAGGAATA 59.095 57.895 0.00 0.00 0.00 1.75
1756 6219 2.671070 CAGCCCACACGGAGGAAT 59.329 61.111 0.00 0.00 0.00 3.01
1757 6220 4.329545 GCAGCCCACACGGAGGAA 62.330 66.667 0.00 0.00 0.00 3.36
1837 6412 9.620259 GTTCCCAAGTCAAATAAAGAGAGATAT 57.380 33.333 0.00 0.00 0.00 1.63
1838 6413 8.602424 TGTTCCCAAGTCAAATAAAGAGAGATA 58.398 33.333 0.00 0.00 0.00 1.98
1839 6414 7.461749 TGTTCCCAAGTCAAATAAAGAGAGAT 58.538 34.615 0.00 0.00 0.00 2.75
1840 6415 6.837312 TGTTCCCAAGTCAAATAAAGAGAGA 58.163 36.000 0.00 0.00 0.00 3.10
1841 6416 7.510549 TTGTTCCCAAGTCAAATAAAGAGAG 57.489 36.000 0.00 0.00 0.00 3.20
1842 6417 9.581289 TTATTGTTCCCAAGTCAAATAAAGAGA 57.419 29.630 0.00 0.00 33.17 3.10
1883 6458 7.544622 GTTATCAGGACCCAAAATAAAAGACC 58.455 38.462 0.00 0.00 0.00 3.85
1887 6462 5.712917 AGCGTTATCAGGACCCAAAATAAAA 59.287 36.000 0.00 0.00 0.00 1.52
1888 6463 5.258051 AGCGTTATCAGGACCCAAAATAAA 58.742 37.500 0.00 0.00 0.00 1.40
1889 6464 4.850680 AGCGTTATCAGGACCCAAAATAA 58.149 39.130 0.00 0.00 0.00 1.40
1890 6465 4.080807 TGAGCGTTATCAGGACCCAAAATA 60.081 41.667 0.00 0.00 0.00 1.40
1891 6466 3.279434 GAGCGTTATCAGGACCCAAAAT 58.721 45.455 0.00 0.00 0.00 1.82
1892 6467 2.039216 TGAGCGTTATCAGGACCCAAAA 59.961 45.455 0.00 0.00 0.00 2.44
1893 6468 1.626321 TGAGCGTTATCAGGACCCAAA 59.374 47.619 0.00 0.00 0.00 3.28
1894 6469 1.066430 GTGAGCGTTATCAGGACCCAA 60.066 52.381 0.00 0.00 0.00 4.12
1895 6470 0.535335 GTGAGCGTTATCAGGACCCA 59.465 55.000 0.00 0.00 0.00 4.51
1897 6472 1.641577 GTGTGAGCGTTATCAGGACC 58.358 55.000 0.00 0.00 0.00 4.46
1899 6474 0.885879 ACGTGTGAGCGTTATCAGGA 59.114 50.000 0.00 0.00 43.04 3.86
1900 6475 0.992072 CACGTGTGAGCGTTATCAGG 59.008 55.000 7.58 0.00 43.83 3.86
1901 6476 1.698165 ACACGTGTGAGCGTTATCAG 58.302 50.000 22.71 0.00 43.83 2.90
1902 6477 3.877874 ACACGTGTGAGCGTTATCA 57.122 47.368 22.71 0.00 43.83 2.15
1915 6490 2.490903 GGATGTCTAGTACACCACACGT 59.509 50.000 0.00 0.00 42.09 4.49
1916 6491 2.477357 CGGATGTCTAGTACACCACACG 60.477 54.545 0.00 0.00 42.09 4.49
1918 6493 1.475280 GCGGATGTCTAGTACACCACA 59.525 52.381 0.00 0.00 42.09 4.17
1920 6495 1.108776 GGCGGATGTCTAGTACACCA 58.891 55.000 0.00 0.00 42.09 4.17
1921 6496 0.388294 GGGCGGATGTCTAGTACACC 59.612 60.000 0.00 0.00 42.09 4.16
1922 6497 1.337387 GAGGGCGGATGTCTAGTACAC 59.663 57.143 0.00 0.00 42.09 2.90
1923 6498 1.064240 TGAGGGCGGATGTCTAGTACA 60.064 52.381 0.00 0.00 43.86 2.90
1924 6499 1.337387 GTGAGGGCGGATGTCTAGTAC 59.663 57.143 0.00 0.00 0.00 2.73
1926 6501 0.324368 TGTGAGGGCGGATGTCTAGT 60.324 55.000 0.00 0.00 0.00 2.57
1928 6503 1.040646 GATGTGAGGGCGGATGTCTA 58.959 55.000 0.00 0.00 0.00 2.59
1929 6504 0.977627 TGATGTGAGGGCGGATGTCT 60.978 55.000 0.00 0.00 0.00 3.41
1930 6505 0.107456 ATGATGTGAGGGCGGATGTC 59.893 55.000 0.00 0.00 0.00 3.06
1931 6506 0.179037 CATGATGTGAGGGCGGATGT 60.179 55.000 0.00 0.00 0.00 3.06
1932 6507 0.179037 ACATGATGTGAGGGCGGATG 60.179 55.000 0.00 0.00 0.00 3.51
1943 6518 1.300971 GCTCACGCCACACATGATGT 61.301 55.000 0.00 0.00 44.81 3.06
1944 6519 1.300266 TGCTCACGCCACACATGATG 61.300 55.000 0.00 0.00 34.43 3.07
1945 6520 1.003476 TGCTCACGCCACACATGAT 60.003 52.632 0.00 0.00 34.43 2.45
1946 6521 1.668793 CTGCTCACGCCACACATGA 60.669 57.895 0.00 0.00 34.43 3.07
1947 6522 2.683859 CCTGCTCACGCCACACATG 61.684 63.158 0.00 0.00 34.43 3.21
1949 6524 3.519973 CTCCTGCTCACGCCACACA 62.520 63.158 0.00 0.00 34.43 3.72
1950 6525 2.740055 CTCCTGCTCACGCCACAC 60.740 66.667 0.00 0.00 34.43 3.82
1977 6552 0.107897 TTCGACAACACACAGCCTGT 60.108 50.000 0.00 0.00 0.00 4.00
1979 6554 0.107897 TGTTCGACAACACACAGCCT 60.108 50.000 0.00 0.00 37.61 4.58
1980 6555 0.944386 ATGTTCGACAACACACAGCC 59.056 50.000 0.00 0.00 45.47 4.85
1983 6558 6.426327 CAATTCTAATGTTCGACAACACACA 58.574 36.000 0.00 0.00 45.47 3.72
1985 6560 5.448438 GCAATTCTAATGTTCGACAACACA 58.552 37.500 0.00 0.00 45.47 3.72
1986 6561 4.851558 GGCAATTCTAATGTTCGACAACAC 59.148 41.667 0.00 0.00 45.47 3.32
1990 6565 3.438781 GTGGGCAATTCTAATGTTCGACA 59.561 43.478 0.00 0.00 0.00 4.35
1991 6566 3.438781 TGTGGGCAATTCTAATGTTCGAC 59.561 43.478 0.00 0.00 0.00 4.20
1992 6567 3.438781 GTGTGGGCAATTCTAATGTTCGA 59.561 43.478 0.00 0.00 0.00 3.71
1993 6568 3.727673 CGTGTGGGCAATTCTAATGTTCG 60.728 47.826 0.00 0.00 0.00 3.95
1994 6569 3.190535 ACGTGTGGGCAATTCTAATGTTC 59.809 43.478 0.00 0.00 0.00 3.18
1996 6571 2.487762 CACGTGTGGGCAATTCTAATGT 59.512 45.455 7.58 0.00 0.00 2.71
1999 6574 1.876799 CACACGTGTGGGCAATTCTAA 59.123 47.619 35.65 0.00 42.10 2.10
2000 6575 1.518325 CACACGTGTGGGCAATTCTA 58.482 50.000 35.65 0.00 42.10 2.10
2002 6577 4.942090 CACACGTGTGGGCAATTC 57.058 55.556 35.65 0.00 42.10 2.17
2011 6586 3.448533 TAGTTGCGCCCACACGTGT 62.449 57.895 17.22 17.22 34.88 4.49
2012 6587 2.663520 TAGTTGCGCCCACACGTG 60.664 61.111 15.48 15.48 34.88 4.49
2013 6588 2.653953 AAGTAGTTGCGCCCACACGT 62.654 55.000 4.18 0.00 34.88 4.49
2016 6591 1.666553 CGAAGTAGTTGCGCCCACA 60.667 57.895 4.18 0.00 0.00 4.17
2017 6592 1.666872 ACGAAGTAGTTGCGCCCAC 60.667 57.895 4.18 0.83 41.94 4.61
2018 6593 1.666553 CACGAAGTAGTTGCGCCCA 60.667 57.895 4.18 0.00 41.61 5.36
2019 6594 3.023591 GCACGAAGTAGTTGCGCCC 62.024 63.158 4.18 0.00 41.61 6.13
2020 6595 2.474712 GCACGAAGTAGTTGCGCC 59.525 61.111 4.18 0.00 41.61 6.53
2021 6596 2.314647 TGGCACGAAGTAGTTGCGC 61.315 57.895 0.00 0.00 41.61 6.09
2023 6598 0.234884 GTGTGGCACGAAGTAGTTGC 59.765 55.000 13.77 0.00 41.61 4.17
2036 6611 1.894756 TACTTGTTGGGCGTGTGGC 60.895 57.895 0.00 0.00 42.51 5.01
2037 6612 0.534203 AGTACTTGTTGGGCGTGTGG 60.534 55.000 0.00 0.00 0.00 4.17
2039 6614 1.690352 AGTAGTACTTGTTGGGCGTGT 59.310 47.619 0.00 0.00 0.00 4.49
2040 6615 2.288579 TGAGTAGTACTTGTTGGGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
2041 6616 1.965643 TGAGTAGTACTTGTTGGGCGT 59.034 47.619 0.00 0.00 0.00 5.68
2043 6618 3.532542 GGATGAGTAGTACTTGTTGGGC 58.467 50.000 0.00 0.00 0.00 5.36
2044 6619 3.118371 GGGGATGAGTAGTACTTGTTGGG 60.118 52.174 0.00 0.00 0.00 4.12
2045 6620 3.517901 TGGGGATGAGTAGTACTTGTTGG 59.482 47.826 0.00 0.00 0.00 3.77
2047 6622 3.518303 GGTGGGGATGAGTAGTACTTGTT 59.482 47.826 0.00 0.00 0.00 2.83
2048 6623 3.105283 GGTGGGGATGAGTAGTACTTGT 58.895 50.000 0.00 0.00 0.00 3.16
2049 6624 2.434702 GGGTGGGGATGAGTAGTACTTG 59.565 54.545 0.00 0.00 0.00 3.16
2050 6625 2.318207 AGGGTGGGGATGAGTAGTACTT 59.682 50.000 0.00 0.00 0.00 2.24
2051 6626 1.938069 AGGGTGGGGATGAGTAGTACT 59.062 52.381 1.37 1.37 0.00 2.73
2052 6627 2.317973 GAGGGTGGGGATGAGTAGTAC 58.682 57.143 0.00 0.00 0.00 2.73
2054 6629 0.397254 CGAGGGTGGGGATGAGTAGT 60.397 60.000 0.00 0.00 0.00 2.73
2057 6632 3.083997 GCGAGGGTGGGGATGAGT 61.084 66.667 0.00 0.00 0.00 3.41
2058 6633 4.227134 CGCGAGGGTGGGGATGAG 62.227 72.222 0.00 0.00 0.00 2.90
2060 6635 4.838152 CACGCGAGGGTGGGGATG 62.838 72.222 15.93 0.00 34.27 3.51
2076 6651 2.161410 GTCATATTTGCTTCGTGCCACA 59.839 45.455 0.00 0.00 42.00 4.17
2078 6653 1.742831 GGTCATATTTGCTTCGTGCCA 59.257 47.619 1.30 0.00 42.00 4.92
2079 6654 1.742831 TGGTCATATTTGCTTCGTGCC 59.257 47.619 1.30 0.00 42.00 5.01
2082 6657 2.415168 CGTGTGGTCATATTTGCTTCGT 59.585 45.455 0.00 0.00 0.00 3.85
2083 6658 2.415168 ACGTGTGGTCATATTTGCTTCG 59.585 45.455 0.00 0.00 0.00 3.79
2084 6659 4.154195 AGAACGTGTGGTCATATTTGCTTC 59.846 41.667 0.00 0.00 0.00 3.86
2085 6660 4.072131 AGAACGTGTGGTCATATTTGCTT 58.928 39.130 0.00 0.00 0.00 3.91
2086 6661 3.436704 CAGAACGTGTGGTCATATTTGCT 59.563 43.478 0.00 0.00 0.00 3.91
2087 6662 3.426159 CCAGAACGTGTGGTCATATTTGC 60.426 47.826 8.74 0.00 0.00 3.68
2088 6663 3.426159 GCCAGAACGTGTGGTCATATTTG 60.426 47.826 16.49 0.00 37.40 2.32
2089 6664 2.747446 GCCAGAACGTGTGGTCATATTT 59.253 45.455 16.49 0.00 37.40 1.40
2090 6665 2.356135 GCCAGAACGTGTGGTCATATT 58.644 47.619 16.49 0.00 37.40 1.28
2091 6666 1.739035 CGCCAGAACGTGTGGTCATAT 60.739 52.381 16.49 0.00 37.40 1.78
2092 6667 0.389296 CGCCAGAACGTGTGGTCATA 60.389 55.000 16.49 0.00 37.40 2.15
2094 6669 2.279851 CGCCAGAACGTGTGGTCA 60.280 61.111 16.49 0.00 37.40 4.02
2095 6670 3.712881 GCGCCAGAACGTGTGGTC 61.713 66.667 16.49 9.34 37.40 4.02
2096 6671 4.539083 TGCGCCAGAACGTGTGGT 62.539 61.111 16.49 0.00 37.40 4.16
2097 6672 3.276091 TTGCGCCAGAACGTGTGG 61.276 61.111 4.18 12.03 38.21 4.17
2100 7724 3.276091 TGGTTGCGCCAGAACGTG 61.276 61.111 4.18 0.00 43.61 4.49
2111 7735 1.283736 CGGATACCTAACGTGGTTGC 58.716 55.000 2.52 0.00 41.22 4.17
2119 7743 2.288030 CGTCATCCCACGGATACCTAAC 60.288 54.545 0.00 0.00 40.98 2.34
2120 7744 1.958579 CGTCATCCCACGGATACCTAA 59.041 52.381 0.00 0.00 40.98 2.69
2121 7745 1.143481 TCGTCATCCCACGGATACCTA 59.857 52.381 0.00 0.00 40.98 3.08
2122 7746 0.106369 TCGTCATCCCACGGATACCT 60.106 55.000 0.00 0.00 40.98 3.08
2123 7747 0.966920 ATCGTCATCCCACGGATACC 59.033 55.000 0.00 0.00 40.98 2.73
2125 7749 3.893200 ACTAAATCGTCATCCCACGGATA 59.107 43.478 0.00 0.00 40.98 2.59
2126 7750 2.698797 ACTAAATCGTCATCCCACGGAT 59.301 45.455 0.00 0.00 44.21 4.18
2127 7751 2.104967 ACTAAATCGTCATCCCACGGA 58.895 47.619 0.00 0.00 40.35 4.69
2129 7753 2.030457 GCAACTAAATCGTCATCCCACG 59.970 50.000 0.00 0.00 41.36 4.94
2130 7754 2.354821 GGCAACTAAATCGTCATCCCAC 59.645 50.000 0.00 0.00 0.00 4.61
2131 7755 2.026729 TGGCAACTAAATCGTCATCCCA 60.027 45.455 0.00 0.00 37.61 4.37
2132 7756 2.639065 TGGCAACTAAATCGTCATCCC 58.361 47.619 0.00 0.00 37.61 3.85
2133 7757 3.251004 GGATGGCAACTAAATCGTCATCC 59.749 47.826 6.50 6.50 41.24 3.51
2136 7760 2.276201 CGGATGGCAACTAAATCGTCA 58.724 47.619 0.00 0.00 37.61 4.35
2137 7761 1.597663 CCGGATGGCAACTAAATCGTC 59.402 52.381 0.00 0.00 37.61 4.20
2138 7762 1.663695 CCGGATGGCAACTAAATCGT 58.336 50.000 0.00 0.00 37.61 3.73
2140 7764 2.341846 TCCCGGATGGCAACTAAATC 57.658 50.000 0.73 0.00 37.61 2.17
2142 7766 2.051334 CATCCCGGATGGCAACTAAA 57.949 50.000 18.55 0.00 36.51 1.85
2143 7767 3.798794 CATCCCGGATGGCAACTAA 57.201 52.632 18.55 0.00 36.51 2.24
2151 7775 1.881973 CTACATTTGCCATCCCGGATG 59.118 52.381 19.26 19.26 39.52 3.51
2152 7776 1.819305 GCTACATTTGCCATCCCGGAT 60.819 52.381 0.73 0.00 36.56 4.18
2153 7777 0.465460 GCTACATTTGCCATCCCGGA 60.465 55.000 0.73 0.00 36.56 5.14
2154 7778 0.466189 AGCTACATTTGCCATCCCGG 60.466 55.000 0.00 0.00 38.11 5.73
2155 7779 0.664761 CAGCTACATTTGCCATCCCG 59.335 55.000 0.00 0.00 0.00 5.14
2157 7781 4.981806 TTTACAGCTACATTTGCCATCC 57.018 40.909 0.00 0.00 0.00 3.51
2158 7782 4.800471 GCTTTTACAGCTACATTTGCCATC 59.200 41.667 0.00 0.00 46.27 3.51
2159 7783 4.747810 GCTTTTACAGCTACATTTGCCAT 58.252 39.130 0.00 0.00 46.27 4.40
2172 7796 5.320549 AGAGAATTGCCATGCTTTTACAG 57.679 39.130 0.00 0.00 0.00 2.74
2173 7797 5.726980 AAGAGAATTGCCATGCTTTTACA 57.273 34.783 0.00 0.00 0.00 2.41
2174 7798 8.707938 AATAAAGAGAATTGCCATGCTTTTAC 57.292 30.769 0.00 0.00 0.00 2.01
2175 7799 9.723601 AAAATAAAGAGAATTGCCATGCTTTTA 57.276 25.926 0.00 0.08 0.00 1.52
2176 7800 8.508875 CAAAATAAAGAGAATTGCCATGCTTTT 58.491 29.630 0.00 0.00 0.00 2.27
2177 7801 7.120138 CCAAAATAAAGAGAATTGCCATGCTTT 59.880 33.333 0.00 0.00 0.00 3.51
2178 7802 6.596497 CCAAAATAAAGAGAATTGCCATGCTT 59.404 34.615 0.00 0.00 0.00 3.91
2180 7804 5.876460 ACCAAAATAAAGAGAATTGCCATGC 59.124 36.000 0.00 0.00 0.00 4.06
2181 7805 7.910441 AACCAAAATAAAGAGAATTGCCATG 57.090 32.000 0.00 0.00 0.00 3.66
2183 7807 8.646900 AGTTAACCAAAATAAAGAGAATTGCCA 58.353 29.630 0.88 0.00 0.00 4.92
2214 7863 8.673711 GCAACTACCATAAATTAGACATGACAA 58.326 33.333 0.00 0.00 0.00 3.18
2217 7866 6.481976 CGGCAACTACCATAAATTAGACATGA 59.518 38.462 0.00 0.00 0.00 3.07
2224 7873 5.247084 ACACACGGCAACTACCATAAATTA 58.753 37.500 0.00 0.00 0.00 1.40
2230 9772 2.843401 TTACACACGGCAACTACCAT 57.157 45.000 0.00 0.00 0.00 3.55
2234 9776 4.382291 AGTTTGATTACACACGGCAACTA 58.618 39.130 0.00 0.00 32.68 2.24
2238 9780 7.468441 CAATTATAGTTTGATTACACACGGCA 58.532 34.615 0.00 0.00 32.68 5.69
2240 9782 6.910433 GGCAATTATAGTTTGATTACACACGG 59.090 38.462 2.59 0.00 32.68 4.94
2246 9788 7.428183 CACACACGGCAATTATAGTTTGATTAC 59.572 37.037 2.59 0.00 0.00 1.89
2249 9791 5.645929 TCACACACGGCAATTATAGTTTGAT 59.354 36.000 2.59 0.00 0.00 2.57
2251 9793 5.289917 TCACACACGGCAATTATAGTTTG 57.710 39.130 0.00 0.00 0.00 2.93
2252 9794 6.509418 AATCACACACGGCAATTATAGTTT 57.491 33.333 0.00 0.00 0.00 2.66
2253 9795 7.335924 AGTTAATCACACACGGCAATTATAGTT 59.664 33.333 0.00 0.00 0.00 2.24
2254 9796 6.821665 AGTTAATCACACACGGCAATTATAGT 59.178 34.615 0.00 0.00 0.00 2.12
2255 9797 7.246674 AGTTAATCACACACGGCAATTATAG 57.753 36.000 0.00 0.00 0.00 1.31
2256 9798 7.982919 AGTAGTTAATCACACACGGCAATTATA 59.017 33.333 0.00 0.00 0.00 0.98
2257 9799 6.821665 AGTAGTTAATCACACACGGCAATTAT 59.178 34.615 0.00 0.00 0.00 1.28
2258 9800 6.167685 AGTAGTTAATCACACACGGCAATTA 58.832 36.000 0.00 0.00 0.00 1.40
2260 9802 4.575885 AGTAGTTAATCACACACGGCAAT 58.424 39.130 0.00 0.00 0.00 3.56
2261 9803 3.997762 AGTAGTTAATCACACACGGCAA 58.002 40.909 0.00 0.00 0.00 4.52
2262 9804 3.671008 AGTAGTTAATCACACACGGCA 57.329 42.857 0.00 0.00 0.00 5.69
2263 9805 3.424433 GCAAGTAGTTAATCACACACGGC 60.424 47.826 0.00 0.00 0.00 5.68
2264 9806 3.124636 GGCAAGTAGTTAATCACACACGG 59.875 47.826 0.00 0.00 0.00 4.94
2265 9807 3.743911 TGGCAAGTAGTTAATCACACACG 59.256 43.478 0.00 0.00 0.00 4.49
2266 9808 4.513692 TGTGGCAAGTAGTTAATCACACAC 59.486 41.667 0.00 0.00 32.12 3.82
2267 9809 4.709250 TGTGGCAAGTAGTTAATCACACA 58.291 39.130 0.00 0.00 34.37 3.72
2268 9810 5.880054 ATGTGGCAAGTAGTTAATCACAC 57.120 39.130 11.98 0.00 36.65 3.82
2269 9811 7.334858 TCATATGTGGCAAGTAGTTAATCACA 58.665 34.615 1.90 12.07 37.91 3.58
2270 9812 7.786178 TCATATGTGGCAAGTAGTTAATCAC 57.214 36.000 1.90 0.00 0.00 3.06
2272 9814 8.607441 TGATCATATGTGGCAAGTAGTTAATC 57.393 34.615 1.90 0.00 0.00 1.75
2274 9816 8.673711 GTTTGATCATATGTGGCAAGTAGTTAA 58.326 33.333 1.90 0.00 0.00 2.01
2275 9817 7.826744 TGTTTGATCATATGTGGCAAGTAGTTA 59.173 33.333 1.90 0.00 0.00 2.24
2276 9818 6.658816 TGTTTGATCATATGTGGCAAGTAGTT 59.341 34.615 1.90 0.00 0.00 2.24
2278 9820 6.682423 TGTTTGATCATATGTGGCAAGTAG 57.318 37.500 1.90 0.00 0.00 2.57
2280 9822 5.981088 TTGTTTGATCATATGTGGCAAGT 57.019 34.783 1.90 0.00 0.00 3.16
2281 9823 6.256975 CCAATTGTTTGATCATATGTGGCAAG 59.743 38.462 4.43 0.00 34.60 4.01
2282 9824 6.107343 CCAATTGTTTGATCATATGTGGCAA 58.893 36.000 4.43 3.44 34.60 4.52
2283 9825 5.187381 ACCAATTGTTTGATCATATGTGGCA 59.813 36.000 4.43 0.00 34.60 4.92
2284 9826 5.663456 ACCAATTGTTTGATCATATGTGGC 58.337 37.500 4.43 0.00 34.60 5.01
2291 9833 8.587608 ACTGTGATTAACCAATTGTTTGATCAT 58.412 29.630 20.81 7.54 38.95 2.45
2292 9834 7.950512 ACTGTGATTAACCAATTGTTTGATCA 58.049 30.769 16.07 16.07 38.42 2.92
2293 9835 8.702438 CAACTGTGATTAACCAATTGTTTGATC 58.298 33.333 11.96 11.96 38.42 2.92
2294 9836 8.203485 ACAACTGTGATTAACCAATTGTTTGAT 58.797 29.630 4.43 0.00 38.42 2.57
2295 9837 7.551585 ACAACTGTGATTAACCAATTGTTTGA 58.448 30.769 4.43 0.00 38.42 2.69
2296 9838 7.490725 TGACAACTGTGATTAACCAATTGTTTG 59.509 33.333 4.43 0.00 38.42 2.93
2297 9839 7.551585 TGACAACTGTGATTAACCAATTGTTT 58.448 30.769 4.43 0.00 38.42 2.83
2298 9840 7.106439 TGACAACTGTGATTAACCAATTGTT 57.894 32.000 4.43 1.94 41.11 2.83
2299 9841 6.707440 TGACAACTGTGATTAACCAATTGT 57.293 33.333 4.43 0.00 32.67 2.71
2300 9842 7.115236 CACATGACAACTGTGATTAACCAATTG 59.885 37.037 0.00 0.00 45.44 2.32
2305 10643 5.008613 ACACACATGACAACTGTGATTAACC 59.991 40.000 17.45 0.00 45.44 2.85
2306 10644 6.060028 ACACACATGACAACTGTGATTAAC 57.940 37.500 17.45 0.00 45.44 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.