Multiple sequence alignment - TraesCS7D01G502700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G502700 chr7D 100.000 3831 0 0 1 3831 608200057 608196227 0.000000e+00 7075.0
1 TraesCS7D01G502700 chr7D 85.339 3049 255 92 4 2920 514750508 514747520 0.000000e+00 2977.0
2 TraesCS7D01G502700 chr7D 80.059 2046 249 78 49 1988 600232070 600234062 0.000000e+00 1371.0
3 TraesCS7D01G502700 chr7D 87.780 1072 93 20 837 1878 610532297 610533360 0.000000e+00 1219.0
4 TraesCS7D01G502700 chr7D 85.009 1074 103 23 457 1513 609861941 609862973 0.000000e+00 1038.0
5 TraesCS7D01G502700 chr7D 90.364 467 23 13 2999 3444 610534742 610535207 9.160000e-166 593.0
6 TraesCS7D01G502700 chr7D 91.392 395 33 1 2918 3311 514747037 514746643 1.210000e-149 540.0
7 TraesCS7D01G502700 chr7D 83.647 532 39 17 207 705 610531533 610532049 1.250000e-124 457.0
8 TraesCS7D01G502700 chr7D 86.626 329 21 10 189 509 609821569 609821882 3.660000e-90 342.0
9 TraesCS7D01G502700 chr7D 90.984 122 11 0 3709 3830 610535427 610535548 8.510000e-37 165.0
10 TraesCS7D01G502700 chr7D 88.525 122 10 1 3709 3830 514746279 514746162 1.110000e-30 145.0
11 TraesCS7D01G502700 chr7D 93.421 76 4 1 3610 3685 514746352 514746278 1.130000e-20 111.0
12 TraesCS7D01G502700 chr7D 93.421 76 4 1 3610 3685 610535354 610535428 1.130000e-20 111.0
13 TraesCS7D01G502700 chr7B 89.315 3341 217 60 208 3450 694364960 694361662 0.000000e+00 4063.0
14 TraesCS7D01G502700 chr7B 89.176 3363 220 53 55 3311 699146122 699142798 0.000000e+00 4061.0
15 TraesCS7D01G502700 chr7B 89.147 3363 221 53 55 3311 698655812 698652488 0.000000e+00 4056.0
16 TraesCS7D01G502700 chr7B 90.692 2847 173 35 208 3003 696145855 696143050 0.000000e+00 3705.0
17 TraesCS7D01G502700 chr7B 89.203 2621 179 38 739 3311 699182593 699180029 0.000000e+00 3177.0
18 TraesCS7D01G502700 chr7B 89.830 2409 158 36 944 3311 699141473 699139111 0.000000e+00 3011.0
19 TraesCS7D01G502700 chr7B 87.483 1470 120 26 1873 3311 693621426 693619990 0.000000e+00 1637.0
20 TraesCS7D01G502700 chr7B 85.575 1227 111 33 567 1756 693314854 693316051 0.000000e+00 1225.0
21 TraesCS7D01G502700 chr7B 85.515 1077 113 21 449 1513 697024502 697025547 0.000000e+00 1085.0
22 TraesCS7D01G502700 chr7B 84.016 732 60 20 189 890 694189267 694189971 0.000000e+00 651.0
23 TraesCS7D01G502700 chr7B 87.654 405 39 6 2966 3359 12863412 12863816 9.700000e-126 460.0
24 TraesCS7D01G502700 chr7B 84.120 466 45 15 2999 3436 696142881 696142417 1.270000e-114 424.0
25 TraesCS7D01G502700 chr7B 84.389 442 46 13 151 569 699142700 699142259 2.750000e-111 412.0
26 TraesCS7D01G502700 chr7B 89.557 316 23 5 189 500 693313235 693313544 3.590000e-105 392.0
27 TraesCS7D01G502700 chr7B 85.841 339 31 9 245 569 699183216 699182881 1.020000e-90 344.0
28 TraesCS7D01G502700 chr7B 91.057 123 11 0 3709 3831 698652049 698651927 2.370000e-37 167.0
29 TraesCS7D01G502700 chr7B 83.230 161 11 7 3306 3450 699139086 699138926 2.400000e-27 134.0
30 TraesCS7D01G502700 chr7B 89.899 99 8 2 3353 3450 699180017 699179920 4.020000e-25 126.0
31 TraesCS7D01G502700 chr7B 78.733 221 21 15 3610 3830 696142283 696142089 1.450000e-24 124.0
32 TraesCS7D01G502700 chr7B 96.053 76 2 1 3610 3685 699138743 699138669 5.200000e-24 122.0
33 TraesCS7D01G502700 chr7B 84.706 85 7 2 626 710 699182816 699182738 3.170000e-11 80.5
34 TraesCS7D01G502700 chr7A 87.147 1805 147 40 1551 3311 700505023 700506786 0.000000e+00 1969.0
35 TraesCS7D01G502700 chr7A 89.012 1356 104 22 1987 3311 700208119 700206778 0.000000e+00 1637.0
36 TraesCS7D01G502700 chr7A 82.406 1222 140 44 208 1386 700503670 700504859 0.000000e+00 996.0
37 TraesCS7D01G502700 chr7A 92.683 123 9 0 3709 3831 700507193 700507315 1.090000e-40 178.0
38 TraesCS7D01G502700 chr7A 90.984 122 11 0 3709 3830 700206339 700206218 8.510000e-37 165.0
39 TraesCS7D01G502700 chr7A 98.765 81 1 0 3509 3589 669633496 669633416 1.110000e-30 145.0
40 TraesCS7D01G502700 chr7A 98.765 81 1 0 3509 3589 670561262 670561182 1.110000e-30 145.0
41 TraesCS7D01G502700 chr7A 94.737 76 3 1 3610 3685 700206412 700206338 2.420000e-22 117.0
42 TraesCS7D01G502700 chr4A 91.359 1111 66 6 1680 2778 661823500 661822408 0.000000e+00 1493.0
43 TraesCS7D01G502700 chr4A 93.133 830 36 1 874 1682 661826027 661825198 0.000000e+00 1197.0
44 TraesCS7D01G502700 chr4A 82.794 494 47 21 4 481 661826499 661826028 1.280000e-109 407.0
45 TraesCS7D01G502700 chr4A 92.405 79 3 1 3756 3831 661821484 661821406 4.050000e-20 110.0
46 TraesCS7D01G502700 chrUn 85.061 1071 102 23 460 1513 209380914 209379885 0.000000e+00 1038.0
47 TraesCS7D01G502700 chr2B 87.438 406 38 9 2966 3359 135994600 135995004 4.510000e-124 455.0
48 TraesCS7D01G502700 chr4B 84.424 321 21 11 567 880 55721733 55721435 4.840000e-74 289.0
49 TraesCS7D01G502700 chr6D 97.647 85 2 0 3509 3593 11067862 11067946 3.080000e-31 147.0
50 TraesCS7D01G502700 chr5A 97.647 85 2 0 3509 3593 580286855 580286939 3.080000e-31 147.0
51 TraesCS7D01G502700 chr5A 90.099 101 10 0 3509 3609 475328419 475328519 8.640000e-27 132.0
52 TraesCS7D01G502700 chr6B 98.765 81 1 0 3509 3589 12465840 12465760 1.110000e-30 145.0
53 TraesCS7D01G502700 chr5B 98.765 81 1 0 3509 3589 331307412 331307492 1.110000e-30 145.0
54 TraesCS7D01G502700 chr2A 100.000 78 0 0 3509 3586 686840787 686840864 1.110000e-30 145.0
55 TraesCS7D01G502700 chr1A 95.604 91 2 2 3509 3597 575557278 575557368 1.110000e-30 145.0
56 TraesCS7D01G502700 chr1A 97.590 83 2 0 3509 3591 584082821 584082903 3.990000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G502700 chr7D 608196227 608200057 3830 True 7075.000000 7075 100.000000 1 3831 1 chr7D.!!$R1 3830
1 TraesCS7D01G502700 chr7D 600232070 600234062 1992 False 1371.000000 1371 80.059000 49 1988 1 chr7D.!!$F1 1939
2 TraesCS7D01G502700 chr7D 609861941 609862973 1032 False 1038.000000 1038 85.009000 457 1513 1 chr7D.!!$F3 1056
3 TraesCS7D01G502700 chr7D 514746162 514750508 4346 True 943.250000 2977 89.669250 4 3830 4 chr7D.!!$R2 3826
4 TraesCS7D01G502700 chr7D 610531533 610535548 4015 False 509.000000 1219 89.239200 207 3830 5 chr7D.!!$F4 3623
5 TraesCS7D01G502700 chr7B 694361662 694364960 3298 True 4063.000000 4063 89.315000 208 3450 1 chr7B.!!$R2 3242
6 TraesCS7D01G502700 chr7B 698651927 698655812 3885 True 2111.500000 4056 90.102000 55 3831 2 chr7B.!!$R4 3776
7 TraesCS7D01G502700 chr7B 693619990 693621426 1436 True 1637.000000 1637 87.483000 1873 3311 1 chr7B.!!$R1 1438
8 TraesCS7D01G502700 chr7B 699138669 699146122 7453 True 1548.000000 4061 88.535600 55 3685 5 chr7B.!!$R5 3630
9 TraesCS7D01G502700 chr7B 696142089 696145855 3766 True 1417.666667 3705 84.515000 208 3830 3 chr7B.!!$R3 3622
10 TraesCS7D01G502700 chr7B 697024502 697025547 1045 False 1085.000000 1085 85.515000 449 1513 1 chr7B.!!$F3 1064
11 TraesCS7D01G502700 chr7B 699179920 699183216 3296 True 931.875000 3177 87.412250 245 3450 4 chr7B.!!$R6 3205
12 TraesCS7D01G502700 chr7B 693313235 693316051 2816 False 808.500000 1225 87.566000 189 1756 2 chr7B.!!$F4 1567
13 TraesCS7D01G502700 chr7B 694189267 694189971 704 False 651.000000 651 84.016000 189 890 1 chr7B.!!$F2 701
14 TraesCS7D01G502700 chr7A 700503670 700507315 3645 False 1047.666667 1969 87.412000 208 3831 3 chr7A.!!$F1 3623
15 TraesCS7D01G502700 chr7A 700206218 700208119 1901 True 639.666667 1637 91.577667 1987 3830 3 chr7A.!!$R3 1843
16 TraesCS7D01G502700 chr4A 661821406 661826499 5093 True 801.750000 1493 89.922750 4 3831 4 chr4A.!!$R1 3827
17 TraesCS7D01G502700 chrUn 209379885 209380914 1029 True 1038.000000 1038 85.061000 460 1513 1 chrUn.!!$R1 1053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 481 0.459237 ACGCCTCTTGCTGATTCTCG 60.459 55.000 0.0 0.0 38.05 4.04 F
413 509 1.354368 CTAAGGGAAGGCAAGGGAACA 59.646 52.381 0.0 0.0 0.00 3.18 F
1766 5111 1.301716 GAGCGTTTCCTGTGAGGCA 60.302 57.895 0.0 0.0 34.61 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 5066 1.493311 CACGAAGGAAAGCTCACGC 59.507 57.895 0.0 0.0 0.00 5.34 R
2262 5726 4.040706 TCCCGAAGTGGTTTAAGCTTTCTA 59.959 41.667 3.2 0.0 35.15 2.10 R
3398 11491 0.320421 GCTTGTACCTTGAGCGACCA 60.320 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 41 0.687354 AGTGCTGCCCCTAATATCGG 59.313 55.000 0.00 0.00 0.00 4.18
44 49 2.711542 CCCCTAATATCGGGATGCAAC 58.288 52.381 10.82 0.00 44.90 4.17
45 50 2.346803 CCCTAATATCGGGATGCAACG 58.653 52.381 4.38 0.00 44.90 4.10
46 51 2.346803 CCTAATATCGGGATGCAACGG 58.653 52.381 8.60 1.70 0.00 4.44
47 52 1.732259 CTAATATCGGGATGCAACGGC 59.268 52.381 8.60 0.00 41.68 5.68
123 144 2.040278 CACCCCTGCTCCTCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
257 313 3.312989 TTCCTCCTCCTCCCCGTCC 62.313 68.421 0.00 0.00 0.00 4.79
289 352 2.033602 GTACCCTGCCGCCTTTGT 59.966 61.111 0.00 0.00 0.00 2.83
391 481 0.459237 ACGCCTCTTGCTGATTCTCG 60.459 55.000 0.00 0.00 38.05 4.04
395 485 2.099921 GCCTCTTGCTGATTCTCGTCTA 59.900 50.000 0.00 0.00 36.87 2.59
413 509 1.354368 CTAAGGGAAGGCAAGGGAACA 59.646 52.381 0.00 0.00 0.00 3.18
481 601 6.024552 CAAATGTTTGGTGTTATGCCTAGT 57.975 37.500 0.00 0.00 34.59 2.57
502 629 2.650778 GGCTTTTGGCAGGAACCG 59.349 61.111 0.00 0.00 45.26 4.44
509 645 2.070399 TTGGCAGGAACCGGGCTTTA 62.070 55.000 6.32 2.42 37.55 1.85
542 683 5.968848 CGAAGAGTAATCAGTTGAGAGCTAC 59.031 44.000 0.00 0.00 0.00 3.58
681 2081 7.860918 ATATGGCTGCTGATATCTGTATTTG 57.139 36.000 10.85 0.00 0.00 2.32
709 2123 4.321718 CCTTACATGCATAGGATGACTGG 58.678 47.826 8.12 1.01 0.00 4.00
760 2290 4.054671 GAGCTAATCTTGCTAGCAATCGT 58.945 43.478 29.40 18.72 43.55 3.73
820 2352 4.948621 ACTCCTAGCATAGTTTACAGTCGT 59.051 41.667 0.00 0.00 36.82 4.34
835 2419 2.056577 AGTCGTGTTAAGTGTAAGCGC 58.943 47.619 0.00 0.00 0.00 5.92
984 2576 4.400529 TTGCTATGAACCGCTGATAAGA 57.599 40.909 0.00 0.00 0.00 2.10
1078 2684 7.807977 TCTGTTGGCTGGATTAAGATTTATC 57.192 36.000 0.00 0.00 0.00 1.75
1086 2692 9.521503 GGCTGGATTAAGATTTATCTTGTTTTC 57.478 33.333 13.83 6.35 46.01 2.29
1087 2693 9.521503 GCTGGATTAAGATTTATCTTGTTTTCC 57.478 33.333 13.83 13.19 46.01 3.13
1202 2811 4.047627 TCTCACTGTCACCTCAGGAATA 57.952 45.455 0.00 0.00 39.48 1.75
1256 2865 3.445008 TGAGCTATTCAGGAGTCCACTT 58.555 45.455 12.86 0.00 0.00 3.16
1332 2941 2.278013 GCCGCGACGAAGAGGTAG 60.278 66.667 8.23 0.00 33.40 3.18
1539 3163 6.044046 TGCGTATAATTCTGATGTACCGTTT 58.956 36.000 0.00 0.00 0.00 3.60
1633 3278 2.601367 TTTGCAAGCTCTGGGGCC 60.601 61.111 0.00 0.00 0.00 5.80
1721 5066 4.324267 ACAAGAAGAAACCCCTATGAACG 58.676 43.478 0.00 0.00 0.00 3.95
1766 5111 1.301716 GAGCGTTTCCTGTGAGGCA 60.302 57.895 0.00 0.00 34.61 4.75
1899 5251 6.365970 AAGACTTGGATCTATGTGTTCAGT 57.634 37.500 2.16 0.00 0.00 3.41
1997 5438 9.991906 TTCTAAGTACAGTACAGCAAATACTTT 57.008 29.630 13.37 0.00 35.21 2.66
2181 5626 7.748683 GCACTTTTGATTCAATATTGTACGTGA 59.251 33.333 14.97 0.00 0.00 4.35
2238 5702 6.826231 TCGGAATTGCTATTTTATTCACCAGA 59.174 34.615 0.00 0.00 31.47 3.86
2239 5703 7.012327 TCGGAATTGCTATTTTATTCACCAGAG 59.988 37.037 0.00 0.00 31.47 3.35
2244 5708 6.662755 TGCTATTTTATTCACCAGAGTCCAT 58.337 36.000 0.00 0.00 0.00 3.41
2262 5726 5.954150 AGTCCATTGAACAATTAGCCAATCT 59.046 36.000 0.00 0.00 0.00 2.40
2281 5745 7.530863 CCAATCTAGAAAGCTTAAACCACTTC 58.469 38.462 0.00 0.00 0.00 3.01
2302 5768 9.489084 CACTTCGGGATTACATGAGAAATAATA 57.511 33.333 0.00 0.00 0.00 0.98
2572 6051 4.077184 CCCACGAACAGCGGCCTA 62.077 66.667 0.00 0.00 46.49 3.93
2623 6102 4.037208 AGACAGGTAAAAGAAGTCGTCGAA 59.963 41.667 0.00 0.00 34.56 3.71
2625 6104 4.046462 CAGGTAAAAGAAGTCGTCGAACA 58.954 43.478 0.00 0.00 0.00 3.18
2662 6153 2.040278 TCTTTTCTGCATGGCACCTAGT 59.960 45.455 0.00 0.00 33.79 2.57
2731 9897 4.392940 ACAGCAGCTACAACTTCTTCATT 58.607 39.130 0.00 0.00 0.00 2.57
2816 9982 4.472470 AGAGGTCATTCATCATGTTCTCCA 59.528 41.667 0.00 0.00 35.49 3.86
2870 10036 4.860022 ACTTTCTTTGTATAGCCAGCCAT 58.140 39.130 0.00 0.00 0.00 4.40
2932 10593 9.778993 CGTGTATATATATAGCTGTTACGGTTT 57.221 33.333 2.53 0.00 0.00 3.27
2980 10641 5.528043 AACACACATTAGGCAATTGAACA 57.472 34.783 10.34 0.00 0.00 3.18
3151 11153 8.208224 TGGTATCCATTTCTAATTAAGCTCGAA 58.792 33.333 0.00 0.00 0.00 3.71
3155 11157 8.330466 TCCATTTCTAATTAAGCTCGAAAACA 57.670 30.769 0.00 0.00 0.00 2.83
3189 11192 9.326413 CGTCTATTAAAATCTTCAAGGGTACAT 57.674 33.333 0.00 0.00 0.00 2.29
3203 11206 6.884295 TCAAGGGTACATACTGAATTCCTTTG 59.116 38.462 2.27 0.00 31.77 2.77
3238 11241 1.742768 GGACGTATCCAGGCTCCAG 59.257 63.158 0.00 0.00 45.47 3.86
3284 11298 3.326747 AGAGACTATCGGTGCAAACAAC 58.673 45.455 0.00 0.00 0.00 3.32
3324 11398 2.297033 GACAGGATGCACAACAAACCAT 59.703 45.455 0.00 0.00 42.53 3.55
3346 11420 3.077359 ACCATACAGCAGCAAGAAAGAC 58.923 45.455 0.00 0.00 0.00 3.01
3423 11516 2.094700 CGCTCAAGGTACAAGCAGAGTA 60.095 50.000 0.00 0.00 35.76 2.59
3437 11530 3.007398 AGCAGAGTAGTGAAGAAACCTGG 59.993 47.826 0.00 0.00 0.00 4.45
3444 11537 2.092429 AGTGAAGAAACCTGGTGCTTGA 60.092 45.455 16.93 8.42 0.00 3.02
3447 11540 1.322442 AGAAACCTGGTGCTTGAAGC 58.678 50.000 10.84 10.84 42.82 3.86
3460 11553 2.886081 CTTGAAGCAGTGCTAGACGAT 58.114 47.619 20.09 0.09 38.25 3.73
3461 11554 3.735208 GCTTGAAGCAGTGCTAGACGATA 60.735 47.826 20.09 0.00 41.89 2.92
3463 11556 4.230314 TGAAGCAGTGCTAGACGATATC 57.770 45.455 20.09 10.13 38.25 1.63
3464 11557 3.632145 TGAAGCAGTGCTAGACGATATCA 59.368 43.478 20.09 12.82 38.25 2.15
3468 11561 6.332735 AGCAGTGCTAGACGATATCATTTA 57.667 37.500 18.11 0.00 36.99 1.40
3471 11564 6.400515 GCAGTGCTAGACGATATCATTTAAGC 60.401 42.308 8.18 5.49 0.00 3.09
3476 11688 7.382488 TGCTAGACGATATCATTTAAGCTTCAC 59.618 37.037 0.00 0.00 0.00 3.18
3478 11690 7.706281 AGACGATATCATTTAAGCTTCACAG 57.294 36.000 0.00 0.00 0.00 3.66
3480 11692 6.349300 ACGATATCATTTAAGCTTCACAGGT 58.651 36.000 0.00 0.00 0.00 4.00
3516 11728 4.901866 CAAAATGTGCCATTCCGTAAAC 57.098 40.909 1.57 0.00 0.00 2.01
3518 11730 5.704888 CAAAATGTGCCATTCCGTAAACTA 58.295 37.500 1.57 0.00 0.00 2.24
3519 11731 5.968528 AAATGTGCCATTCCGTAAACTAA 57.031 34.783 1.57 0.00 0.00 2.24
3520 11732 6.524101 AAATGTGCCATTCCGTAAACTAAT 57.476 33.333 1.57 0.00 0.00 1.73
3521 11733 7.633193 AAATGTGCCATTCCGTAAACTAATA 57.367 32.000 1.57 0.00 0.00 0.98
3522 11734 7.817418 AATGTGCCATTCCGTAAACTAATAT 57.183 32.000 0.00 0.00 0.00 1.28
3523 11735 8.911918 AATGTGCCATTCCGTAAACTAATATA 57.088 30.769 0.00 0.00 0.00 0.86
3524 11736 8.911918 ATGTGCCATTCCGTAAACTAATATAA 57.088 30.769 0.00 0.00 0.00 0.98
3525 11737 8.373048 TGTGCCATTCCGTAAACTAATATAAG 57.627 34.615 0.00 0.00 0.00 1.73
3526 11738 8.205512 TGTGCCATTCCGTAAACTAATATAAGA 58.794 33.333 0.00 0.00 0.00 2.10
3527 11739 8.709646 GTGCCATTCCGTAAACTAATATAAGAG 58.290 37.037 0.00 0.00 0.00 2.85
3528 11740 7.386848 TGCCATTCCGTAAACTAATATAAGAGC 59.613 37.037 0.00 0.00 0.00 4.09
3529 11741 7.411588 GCCATTCCGTAAACTAATATAAGAGCG 60.412 40.741 0.00 0.00 0.00 5.03
3530 11742 7.597743 CCATTCCGTAAACTAATATAAGAGCGT 59.402 37.037 0.00 0.00 0.00 5.07
3531 11743 8.975439 CATTCCGTAAACTAATATAAGAGCGTT 58.025 33.333 0.00 0.00 0.00 4.84
3532 11744 8.931385 TTCCGTAAACTAATATAAGAGCGTTT 57.069 30.769 0.00 0.00 0.00 3.60
3534 11746 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3535 11747 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3549 11761 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
3550 11762 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
3551 11763 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
3552 11764 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
3560 11772 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
3561 11773 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
3562 11774 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
3563 11775 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
3564 11776 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
3565 11777 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
3580 11792 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3581 11793 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3582 11794 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3583 11795 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3584 11796 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3590 11802 9.710818 ATATTAGTTTACAGAGGGAGTACTTCA 57.289 33.333 2.92 0.00 0.00 3.02
3591 11803 5.725325 AGTTTACAGAGGGAGTACTTCAC 57.275 43.478 2.92 0.00 0.00 3.18
3592 11804 5.145564 AGTTTACAGAGGGAGTACTTCACA 58.854 41.667 2.92 0.00 0.00 3.58
3593 11805 5.244178 AGTTTACAGAGGGAGTACTTCACAG 59.756 44.000 2.92 0.00 0.00 3.66
3594 11806 2.530701 ACAGAGGGAGTACTTCACAGG 58.469 52.381 2.92 0.00 0.00 4.00
3595 11807 2.158295 ACAGAGGGAGTACTTCACAGGT 60.158 50.000 2.92 0.00 0.00 4.00
3596 11808 2.494073 CAGAGGGAGTACTTCACAGGTC 59.506 54.545 2.92 0.00 0.00 3.85
3597 11809 2.380590 AGAGGGAGTACTTCACAGGTCT 59.619 50.000 2.92 0.00 0.00 3.85
3598 11810 2.494073 GAGGGAGTACTTCACAGGTCTG 59.506 54.545 2.92 0.00 0.00 3.51
3599 11811 2.158295 AGGGAGTACTTCACAGGTCTGT 60.158 50.000 2.92 0.00 46.17 3.41
3600 11812 3.075582 AGGGAGTACTTCACAGGTCTGTA 59.924 47.826 2.92 0.00 42.83 2.74
3601 11813 3.444388 GGGAGTACTTCACAGGTCTGTAG 59.556 52.174 2.92 1.74 42.83 2.74
3602 11814 3.119424 GGAGTACTTCACAGGTCTGTAGC 60.119 52.174 3.06 0.00 42.83 3.58
3603 11815 3.497332 AGTACTTCACAGGTCTGTAGCA 58.503 45.455 3.06 0.00 42.83 3.49
3604 11816 3.895656 AGTACTTCACAGGTCTGTAGCAA 59.104 43.478 3.06 0.00 42.83 3.91
3605 11817 3.838244 ACTTCACAGGTCTGTAGCAAA 57.162 42.857 3.06 0.00 42.83 3.68
3606 11818 4.150897 ACTTCACAGGTCTGTAGCAAAA 57.849 40.909 3.06 0.00 42.83 2.44
3607 11819 3.877508 ACTTCACAGGTCTGTAGCAAAAC 59.122 43.478 3.06 0.00 42.83 2.43
3608 11820 2.846193 TCACAGGTCTGTAGCAAAACC 58.154 47.619 3.06 0.00 42.83 3.27
3649 11861 0.951558 ACTGTAGCAAAACCGGCAAG 59.048 50.000 0.00 0.00 0.00 4.01
3658 11870 1.040339 AAACCGGCAAGGCAAACAGA 61.040 50.000 0.00 0.00 46.52 3.41
3685 11903 2.321213 GCGAGCGCTATTCCCATTT 58.679 52.632 11.50 0.00 38.26 2.32
3686 11904 0.235926 GCGAGCGCTATTCCCATTTC 59.764 55.000 11.50 0.00 38.26 2.17
3687 11905 1.581934 CGAGCGCTATTCCCATTTCA 58.418 50.000 11.50 0.00 0.00 2.69
3688 11906 2.146342 CGAGCGCTATTCCCATTTCAT 58.854 47.619 11.50 0.00 0.00 2.57
3689 11907 2.549754 CGAGCGCTATTCCCATTTCATT 59.450 45.455 11.50 0.00 0.00 2.57
3690 11908 3.745975 CGAGCGCTATTCCCATTTCATTA 59.254 43.478 11.50 0.00 0.00 1.90
3691 11909 4.213270 CGAGCGCTATTCCCATTTCATTAA 59.787 41.667 11.50 0.00 0.00 1.40
3692 11910 5.106555 CGAGCGCTATTCCCATTTCATTAAT 60.107 40.000 11.50 0.00 0.00 1.40
3693 11911 6.092122 CGAGCGCTATTCCCATTTCATTAATA 59.908 38.462 11.50 0.00 0.00 0.98
3694 11912 7.201644 CGAGCGCTATTCCCATTTCATTAATAT 60.202 37.037 11.50 0.00 0.00 1.28
3695 11913 9.109393 GAGCGCTATTCCCATTTCATTAATATA 57.891 33.333 11.50 0.00 0.00 0.86
3696 11914 9.113838 AGCGCTATTCCCATTTCATTAATATAG 57.886 33.333 8.99 0.00 0.00 1.31
3697 11915 8.893727 GCGCTATTCCCATTTCATTAATATAGT 58.106 33.333 0.00 0.00 0.00 2.12
3721 11939 4.473477 AATAGTACTTCACAGGGCAGTC 57.527 45.455 0.00 0.00 0.00 3.51
3736 11954 1.340889 GCAGTCAGGCAGGAGATAGAG 59.659 57.143 0.00 0.00 0.00 2.43
3747 11965 3.390639 CAGGAGATAGAGGCTGTTCCATT 59.609 47.826 0.00 0.00 37.29 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.847516 TCTTGCGCCGGTCGATCG 62.848 66.667 20.06 12.09 41.67 3.69
1 2 2.956964 CTCTTGCGCCGGTCGATC 60.957 66.667 20.06 5.86 41.67 3.69
2 3 3.760035 ACTCTTGCGCCGGTCGAT 61.760 61.111 20.06 0.00 41.67 3.59
139 160 5.702349 AGAGAAGGAAAGAAATGCTGTTG 57.298 39.130 0.00 0.00 0.00 3.33
142 163 4.157472 GGGAAGAGAAGGAAAGAAATGCTG 59.843 45.833 0.00 0.00 0.00 4.41
377 459 3.131223 CCCTTAGACGAGAATCAGCAAGA 59.869 47.826 0.00 0.00 33.17 3.02
380 466 2.735151 TCCCTTAGACGAGAATCAGCA 58.265 47.619 0.00 0.00 33.17 4.41
391 481 1.286248 TCCCTTGCCTTCCCTTAGAC 58.714 55.000 0.00 0.00 0.00 2.59
395 485 0.178961 GTGTTCCCTTGCCTTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
413 509 2.303163 TTCTAGCACACACACAACGT 57.697 45.000 0.00 0.00 0.00 3.99
481 601 3.140073 TTCCTGCCAAAAGCCCCGA 62.140 57.895 0.00 0.00 42.71 5.14
491 618 1.858739 ATAAAGCCCGGTTCCTGCCA 61.859 55.000 0.00 0.00 0.00 4.92
502 629 4.816925 ACTCTTCGAGCAAATATAAAGCCC 59.183 41.667 0.00 0.00 32.04 5.19
509 645 7.981789 TCAACTGATTACTCTTCGAGCAAATAT 59.018 33.333 0.00 0.00 32.04 1.28
542 683 6.701937 TGAAAATATCTGCTAAACTTACGCG 58.298 36.000 3.53 3.53 0.00 6.01
709 2123 9.471084 GAGAGTTAAATAGTGGAAGCTAGATTC 57.529 37.037 12.37 12.37 0.00 2.52
757 2287 0.522626 TCCGAAGCATACACGAACGA 59.477 50.000 0.14 0.00 0.00 3.85
760 2290 3.655486 TCTTTTCCGAAGCATACACGAA 58.345 40.909 0.00 0.00 0.00 3.85
820 2352 4.062293 ACATCAAGCGCTTACACTTAACA 58.938 39.130 24.55 0.00 0.00 2.41
835 2419 4.114058 CCAACCTTGGCATAACATCAAG 57.886 45.455 0.00 0.00 42.21 3.02
1078 2684 3.875134 ACACACGTAGAAGGGAAAACAAG 59.125 43.478 0.00 0.00 0.00 3.16
1086 2692 0.246635 CTGGGACACACGTAGAAGGG 59.753 60.000 0.00 0.00 0.00 3.95
1087 2693 0.246635 CCTGGGACACACGTAGAAGG 59.753 60.000 0.00 0.00 0.00 3.46
1202 2811 6.016777 CAGGCTTGAGTTCACTGTATTCTTTT 60.017 38.462 0.00 0.00 0.00 2.27
1332 2941 2.691011 AGAGTGAGGCGTCCTAGAAATC 59.309 50.000 3.56 0.00 31.76 2.17
1539 3163 5.335897 GCAACTGATTGGAACTGATAAAGCA 60.336 40.000 0.00 0.00 36.23 3.91
1633 3278 5.064452 GTCCAAAGCAATCACAGATGAGTAG 59.936 44.000 0.00 0.00 38.57 2.57
1721 5066 1.493311 CACGAAGGAAAGCTCACGC 59.507 57.895 0.00 0.00 0.00 5.34
1766 5111 7.172868 TGGATGTTGCAAGACATATTTTCAT 57.827 32.000 0.00 0.00 40.21 2.57
1882 5234 9.546428 CAATTACATACTGAACACATAGATCCA 57.454 33.333 0.00 0.00 0.00 3.41
1883 5235 9.764363 TCAATTACATACTGAACACATAGATCC 57.236 33.333 0.00 0.00 0.00 3.36
1911 5263 6.692849 AAGGGAGCAGATTATCACATATCA 57.307 37.500 0.00 0.00 0.00 2.15
1997 5438 5.184864 TGCAGAACCAAAAGAAGAAAACAGA 59.815 36.000 0.00 0.00 0.00 3.41
2238 5702 5.954150 AGATTGGCTAATTGTTCAATGGACT 59.046 36.000 0.00 0.00 30.97 3.85
2239 5703 6.212888 AGATTGGCTAATTGTTCAATGGAC 57.787 37.500 0.00 0.00 30.97 4.02
2244 5708 7.394359 AGCTTTCTAGATTGGCTAATTGTTCAA 59.606 33.333 11.29 0.00 0.00 2.69
2262 5726 4.040706 TCCCGAAGTGGTTTAAGCTTTCTA 59.959 41.667 3.20 0.00 35.15 2.10
2340 5806 9.578439 ACTAAACTATCGTGGTTGACTTTATAC 57.422 33.333 0.00 0.00 0.00 1.47
2623 6102 8.247562 CAGAAAAGAAGTAGTAGTGCTAGATGT 58.752 37.037 0.00 0.00 0.00 3.06
2625 6104 7.093727 TGCAGAAAAGAAGTAGTAGTGCTAGAT 60.094 37.037 0.00 0.00 0.00 1.98
2662 6153 1.273759 AGCAGAGAAGGTGCATCAGA 58.726 50.000 0.00 0.00 43.82 3.27
2731 9897 1.203237 AGGTCTTCCAGCTCTCCTTCA 60.203 52.381 0.00 0.00 35.89 3.02
2903 10072 7.121911 CGTAACAGCTATATATATACACGCGT 58.878 38.462 5.58 5.58 0.00 6.01
2904 10074 6.572621 CCGTAACAGCTATATATATACACGCG 59.427 42.308 3.53 3.53 0.00 6.01
2905 10077 7.412853 ACCGTAACAGCTATATATATACACGC 58.587 38.462 0.00 1.98 0.00 5.34
2932 10593 4.042809 AGTTACATTTCCACCACCTGATCA 59.957 41.667 0.00 0.00 0.00 2.92
2933 10594 4.589908 AGTTACATTTCCACCACCTGATC 58.410 43.478 0.00 0.00 0.00 2.92
2980 10641 4.458295 CAGAGTCAGAGACCATGCATTTTT 59.542 41.667 0.00 0.00 32.18 1.94
3049 11049 6.096695 ACAACACAATTGTTCAGGTGTAAAC 58.903 36.000 14.51 0.00 44.57 2.01
3151 11153 9.063615 AGATTTTAATAGACGTTCAGGTTGTTT 57.936 29.630 0.00 0.00 0.00 2.83
3155 11157 8.842358 TGAAGATTTTAATAGACGTTCAGGTT 57.158 30.769 0.00 0.00 0.00 3.50
3189 11192 9.035890 TGATCTTCTCTACAAAGGAATTCAGTA 57.964 33.333 7.93 3.85 0.00 2.74
3203 11206 3.949113 ACGTCCCTCTTGATCTTCTCTAC 59.051 47.826 0.00 0.00 0.00 2.59
3230 11233 2.071778 TTCTGCAAAAACTGGAGCCT 57.928 45.000 0.00 0.00 42.99 4.58
3238 11241 4.452114 GGGTTTCATCCATTCTGCAAAAAC 59.548 41.667 0.00 0.00 0.00 2.43
3284 11298 2.279069 ACTCACTCAGCCGGTCTGG 61.279 63.158 20.90 15.27 43.06 3.86
3324 11398 4.253685 GTCTTTCTTGCTGCTGTATGGTA 58.746 43.478 0.00 0.00 0.00 3.25
3396 11489 2.271800 CTTGTACCTTGAGCGACCATC 58.728 52.381 0.00 0.00 0.00 3.51
3398 11491 0.320421 GCTTGTACCTTGAGCGACCA 60.320 55.000 0.00 0.00 0.00 4.02
3423 11516 2.092429 TCAAGCACCAGGTTTCTTCACT 60.092 45.455 0.00 0.00 32.07 3.41
3444 11537 4.862902 ATGATATCGTCTAGCACTGCTT 57.137 40.909 9.30 0.00 40.44 3.91
3447 11540 6.865726 AGCTTAAATGATATCGTCTAGCACTG 59.134 38.462 19.61 2.23 0.00 3.66
3448 11541 6.987386 AGCTTAAATGATATCGTCTAGCACT 58.013 36.000 19.61 5.21 0.00 4.40
3449 11542 7.382488 TGAAGCTTAAATGATATCGTCTAGCAC 59.618 37.037 19.61 15.22 0.00 4.40
3450 11543 7.382488 GTGAAGCTTAAATGATATCGTCTAGCA 59.618 37.037 19.61 5.78 0.00 3.49
3451 11544 7.382488 TGTGAAGCTTAAATGATATCGTCTAGC 59.618 37.037 0.00 13.79 0.00 3.42
3452 11545 8.803201 TGTGAAGCTTAAATGATATCGTCTAG 57.197 34.615 0.00 0.00 0.00 2.43
3453 11546 7.867909 CCTGTGAAGCTTAAATGATATCGTCTA 59.132 37.037 0.00 0.00 0.00 2.59
3454 11547 6.703607 CCTGTGAAGCTTAAATGATATCGTCT 59.296 38.462 0.00 0.00 0.00 4.18
3455 11548 6.480320 ACCTGTGAAGCTTAAATGATATCGTC 59.520 38.462 0.00 0.00 0.00 4.20
3456 11549 6.349300 ACCTGTGAAGCTTAAATGATATCGT 58.651 36.000 0.00 0.00 0.00 3.73
3460 11553 6.061022 TGGACCTGTGAAGCTTAAATGATA 57.939 37.500 0.00 0.00 0.00 2.15
3461 11554 4.922206 TGGACCTGTGAAGCTTAAATGAT 58.078 39.130 0.00 0.00 0.00 2.45
3463 11556 6.678900 GCTTATGGACCTGTGAAGCTTAAATG 60.679 42.308 0.00 0.00 39.51 2.32
3464 11557 5.358160 GCTTATGGACCTGTGAAGCTTAAAT 59.642 40.000 0.00 0.00 39.51 1.40
3468 11561 2.716217 GCTTATGGACCTGTGAAGCTT 58.284 47.619 0.00 0.00 39.51 3.74
3471 11564 3.274288 GGAAGCTTATGGACCTGTGAAG 58.726 50.000 0.00 0.00 0.00 3.02
3509 11721 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3523 11735 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
3524 11736 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
3525 11737 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
3526 11738 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
3527 11739 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
3533 11745 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
3534 11746 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
3535 11747 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
3536 11748 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
3537 11749 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
3538 11750 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
3539 11751 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
3554 11766 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3555 11767 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3556 11768 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3557 11769 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3558 11770 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3564 11776 9.710818 TGAAGTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
3565 11777 8.964772 GTGAAGTACTCCCTCTGTAAACTAATA 58.035 37.037 0.00 0.00 0.00 0.98
3566 11778 7.453752 TGTGAAGTACTCCCTCTGTAAACTAAT 59.546 37.037 0.00 0.00 0.00 1.73
3567 11779 6.779049 TGTGAAGTACTCCCTCTGTAAACTAA 59.221 38.462 0.00 0.00 0.00 2.24
3568 11780 6.309357 TGTGAAGTACTCCCTCTGTAAACTA 58.691 40.000 0.00 0.00 0.00 2.24
3569 11781 5.145564 TGTGAAGTACTCCCTCTGTAAACT 58.854 41.667 0.00 0.00 0.00 2.66
3570 11782 5.464030 TGTGAAGTACTCCCTCTGTAAAC 57.536 43.478 0.00 0.00 0.00 2.01
3571 11783 4.527038 CCTGTGAAGTACTCCCTCTGTAAA 59.473 45.833 0.00 0.00 0.00 2.01
3572 11784 4.087182 CCTGTGAAGTACTCCCTCTGTAA 58.913 47.826 0.00 0.00 0.00 2.41
3573 11785 3.075582 ACCTGTGAAGTACTCCCTCTGTA 59.924 47.826 0.00 0.00 0.00 2.74
3574 11786 2.158295 ACCTGTGAAGTACTCCCTCTGT 60.158 50.000 0.00 0.00 0.00 3.41
3575 11787 2.494073 GACCTGTGAAGTACTCCCTCTG 59.506 54.545 0.00 0.00 0.00 3.35
3576 11788 2.380590 AGACCTGTGAAGTACTCCCTCT 59.619 50.000 0.00 0.00 0.00 3.69
3577 11789 2.494073 CAGACCTGTGAAGTACTCCCTC 59.506 54.545 0.00 0.00 0.00 4.30
3578 11790 2.158295 ACAGACCTGTGAAGTACTCCCT 60.158 50.000 1.31 0.00 43.11 4.20
3579 11791 2.249139 ACAGACCTGTGAAGTACTCCC 58.751 52.381 1.31 0.00 43.11 4.30
3580 11792 3.119424 GCTACAGACCTGTGAAGTACTCC 60.119 52.174 12.54 0.00 44.63 3.85
3581 11793 3.506455 TGCTACAGACCTGTGAAGTACTC 59.494 47.826 12.54 0.00 44.63 2.59
3582 11794 3.497332 TGCTACAGACCTGTGAAGTACT 58.503 45.455 12.54 0.00 44.63 2.73
3583 11795 3.936372 TGCTACAGACCTGTGAAGTAC 57.064 47.619 12.54 0.00 44.63 2.73
3584 11796 4.948341 TTTGCTACAGACCTGTGAAGTA 57.052 40.909 12.54 0.41 44.63 2.24
3585 11797 3.838244 TTTGCTACAGACCTGTGAAGT 57.162 42.857 12.54 0.00 44.63 3.01
3586 11798 3.251004 GGTTTTGCTACAGACCTGTGAAG 59.749 47.826 12.54 4.52 44.63 3.02
3587 11799 3.211045 GGTTTTGCTACAGACCTGTGAA 58.789 45.455 12.54 0.96 44.63 3.18
3588 11800 2.171659 TGGTTTTGCTACAGACCTGTGA 59.828 45.455 12.54 0.00 44.63 3.58
3589 11801 2.571212 TGGTTTTGCTACAGACCTGTG 58.429 47.619 12.54 4.51 44.63 3.66
3590 11802 3.290948 TTGGTTTTGCTACAGACCTGT 57.709 42.857 7.86 7.86 46.87 4.00
3591 11803 3.004734 CCTTTGGTTTTGCTACAGACCTG 59.995 47.826 0.00 0.00 33.33 4.00
3592 11804 3.222603 CCTTTGGTTTTGCTACAGACCT 58.777 45.455 0.00 0.00 33.33 3.85
3593 11805 2.956333 ACCTTTGGTTTTGCTACAGACC 59.044 45.455 0.00 0.00 27.29 3.85
3594 11806 3.630312 TGACCTTTGGTTTTGCTACAGAC 59.370 43.478 0.00 0.00 35.25 3.51
3595 11807 3.892284 TGACCTTTGGTTTTGCTACAGA 58.108 40.909 0.00 0.00 35.25 3.41
3596 11808 4.610945 CTTGACCTTTGGTTTTGCTACAG 58.389 43.478 0.00 0.00 35.25 2.74
3597 11809 3.181480 GCTTGACCTTTGGTTTTGCTACA 60.181 43.478 0.00 0.00 35.25 2.74
3598 11810 3.068165 AGCTTGACCTTTGGTTTTGCTAC 59.932 43.478 8.62 0.00 35.25 3.58
3599 11811 3.295973 AGCTTGACCTTTGGTTTTGCTA 58.704 40.909 8.62 0.00 35.25 3.49
3600 11812 2.110578 AGCTTGACCTTTGGTTTTGCT 58.889 42.857 0.00 0.00 35.25 3.91
3601 11813 2.602257 AGCTTGACCTTTGGTTTTGC 57.398 45.000 0.00 0.00 35.25 3.68
3602 11814 7.206687 TGTAATTAGCTTGACCTTTGGTTTTG 58.793 34.615 0.00 0.00 35.25 2.44
3603 11815 7.354751 TGTAATTAGCTTGACCTTTGGTTTT 57.645 32.000 0.00 0.00 35.25 2.43
3604 11816 6.516693 GCTGTAATTAGCTTGACCTTTGGTTT 60.517 38.462 0.00 0.00 40.52 3.27
3605 11817 5.048013 GCTGTAATTAGCTTGACCTTTGGTT 60.048 40.000 0.00 0.00 40.52 3.67
3606 11818 4.459337 GCTGTAATTAGCTTGACCTTTGGT 59.541 41.667 0.00 0.00 40.52 3.67
3607 11819 4.458989 TGCTGTAATTAGCTTGACCTTTGG 59.541 41.667 0.00 0.00 44.01 3.28
3608 11820 5.182001 AGTGCTGTAATTAGCTTGACCTTTG 59.818 40.000 0.00 0.00 44.01 2.77
3649 11861 1.092345 GCTCCTCCGATCTGTTTGCC 61.092 60.000 0.00 0.00 0.00 4.52
3692 11910 9.204337 TGCCCTGTGAAGTACTATTTTACTATA 57.796 33.333 0.00 0.00 31.73 1.31
3693 11911 8.086143 TGCCCTGTGAAGTACTATTTTACTAT 57.914 34.615 0.00 0.00 31.73 2.12
3694 11912 7.179694 ACTGCCCTGTGAAGTACTATTTTACTA 59.820 37.037 0.00 0.00 31.73 1.82
3695 11913 6.013639 ACTGCCCTGTGAAGTACTATTTTACT 60.014 38.462 0.00 0.00 33.48 2.24
3696 11914 6.171213 ACTGCCCTGTGAAGTACTATTTTAC 58.829 40.000 0.00 0.00 0.00 2.01
3697 11915 6.014070 TGACTGCCCTGTGAAGTACTATTTTA 60.014 38.462 0.00 0.00 0.00 1.52
3698 11916 5.221843 TGACTGCCCTGTGAAGTACTATTTT 60.222 40.000 0.00 0.00 0.00 1.82
3699 11917 4.286032 TGACTGCCCTGTGAAGTACTATTT 59.714 41.667 0.00 0.00 0.00 1.40
3700 11918 3.838317 TGACTGCCCTGTGAAGTACTATT 59.162 43.478 0.00 0.00 0.00 1.73
3701 11919 3.441101 TGACTGCCCTGTGAAGTACTAT 58.559 45.455 0.00 0.00 0.00 2.12
3702 11920 2.826128 CTGACTGCCCTGTGAAGTACTA 59.174 50.000 0.00 0.00 0.00 1.82
3703 11921 1.620819 CTGACTGCCCTGTGAAGTACT 59.379 52.381 0.00 0.00 0.00 2.73
3704 11922 1.338200 CCTGACTGCCCTGTGAAGTAC 60.338 57.143 0.00 0.00 0.00 2.73
3705 11923 0.976641 CCTGACTGCCCTGTGAAGTA 59.023 55.000 0.00 0.00 0.00 2.24
3706 11924 1.757306 CCTGACTGCCCTGTGAAGT 59.243 57.895 0.00 0.00 0.00 3.01
3707 11925 1.673665 GCCTGACTGCCCTGTGAAG 60.674 63.158 0.00 0.00 0.00 3.02
3708 11926 2.401699 CTGCCTGACTGCCCTGTGAA 62.402 60.000 0.00 0.00 0.00 3.18
3709 11927 2.848679 TGCCTGACTGCCCTGTGA 60.849 61.111 0.00 0.00 0.00 3.58
3721 11939 0.680618 CAGCCTCTATCTCCTGCCTG 59.319 60.000 0.00 0.00 0.00 4.85
3747 11965 5.186256 AGAGAGTAGACTGAACCATCTGA 57.814 43.478 0.00 0.00 0.00 3.27
3759 11977 4.563976 GTGTGTCGAGAGTAGAGAGTAGAC 59.436 50.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.